ID code: '2Z74' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 8 C1' DA A -1 beta 4 9 7 30 C1' G A 1 beta 25 31 28 53 C1' C A 2 beta 48 54 51 73 C1' G A 3 beta 68 74 71 96 C1' C A 4 beta 91 97 94 116 C1' C A 5 beta 111 117 114 136 C1' U A 6 131 134 148 C1' G A 7 beta 143 149 146 171 C1' G A 8 beta 166 172 169 194 C1' A A 9 beta 189 195 192 216 C1' C A 10 beta 211 217 214 236 C1' U A 11 beta 231 237 234 256 C1' U A 12 beta 251 257 254 276 C1' A A 13 beta 271 277 274 298 C1' A A 14 beta 293 299 296 320 C1' A A 15 beta 315 321 318 342 C1' G A 16 beta 337 343 340 365 C1' C A 17 beta 360 366 363 385 C1' C A 18 beta 380 386 383 405 C1' A A 19 beta 400 406 403 427 C1' U A 20 beta 422 428 425 448 C1' G B 23 beta 443 449 446 471 C1' G B 24 beta 466 472 469 494 C1' C B 25 beta 489 495 492 514 C1' U B 26 beta 509 515 512 534 C1' U B 27 beta 529 535 532 554 C1' U B 28 beta 549 555 552 574 C1' A B 29 beta 569 575 572 596 C1' A B 30 beta 591 597 594 618 C1' G B 31 beta 613 619 616 641 C1' U B 32 beta 636 642 639 661 C1' U B 33 beta 656 662 659 681 C1' G B 34 beta 676 682 679 704 C1' A B 35 beta 699 705 702 726 C1' C B 36 beta 721 727 724 746 C1' G B 37 beta 741 747 744 769 C1' A B 38 beta 764 770 767 791 C1' G B 39 beta 786 792 789 814 C1' G B 40 beta 809 815 812 837 C1' G B 41 beta 832 838 835 860 C1' C B 42 beta 855 861 858 880 C1' A B 43 beta 875 881 878 902 C1' G B 44 beta 897 903 900 925 C1' G B 45 beta 920 926 923 948 C1' G B 46 beta 943 949 946 971 C1' U B 47 beta 966 972 969 991 C1' U B 48 beta 986 992 989 1011 C1' U B 49 1006 1009 1023 C1' A B 50 beta 1018 1024 1021 1045 C1' U B 51 beta 1040 1046 1043 1065 C1' C B 52 beta 1060 1066 1063 1085 C1' G B 53 beta 1080 1086 1083 1108 C1' A B 54 beta 1103 1109 1106 1130 C1' G B 55 beta 1125 1131 1128 1153 C1' A B 56 beta 1148 1154 1151 1175 C1' C B 57 beta 1170 1176 1173 1195 C1' A B 58 beta 1190 1196 1193 1217 C1' U B 59 beta 1212 1218 1215 1237 C1' C B 60 beta 1232 1238 1235 1257 C1' G B 61 beta 1252 1258 1255 1280 C1' G B 62 beta 1275 1281 1278 1303 C1' C B 63 beta 1298 1304 1301 1323 C1' G B 64 beta 1318 1324 1321 1346 C1' G B 65 beta 1341 1347 1344 1369 C1' G B 66 beta 1364 1370 1367 1392 C1' U B 67 beta 1387 1393 1390 1412 C1' G B 68 beta 1407 1413 1410 1435 C1' C B 69 beta 1430 1436 1433 1455 C1' C B 70 beta 1450 1456 1453 1475 C1' C B 71 beta 1470 1476 1473 1495 C1' U B 72 beta 1490 1496 1493 1515 C1' G B 73 beta 1510 1516 1513 1538 C1' C B 74 beta 1533 1539 1536 1558 C1' G B 75 beta 1553 1559 1556 1581 C1' G B 76 beta 1576 1582 1579 1604 C1' U B 77 beta 1599 1605 1602 1624 C1' C B 78 beta 1619 1625 1622 1644 C1' U B 79 beta 1639 1645 1642 1664 C1' U B 80 beta 1659 1665 1662 1684 C1' C B 81 beta 1679 1685 1682 1704 C1' C B 82 beta 1699 1705 1702 1724 C1' U B 83 beta 1719 1725 1722 1744 C1' G B 84 beta 1739 1745 1742 1767 C1' C B 85 beta 1762 1768 1765 1787 C1' G B 86 beta 1782 1788 1785 1810 C1' A B 87 beta 1805 1811 1808 1832 C1' C B 88 beta 1827 1833 1830 1852 C1' C B 89 beta 1847 1853 1850 1872 C1' G B 90 beta 1867 1873 1870 1895 C1' U B 91 beta 1890 1896 1893 1915 C1' U B 92 beta 1910 1916 1913 1935 C1' A B 93 beta 1930 1936 1933 1957 C1' G B 94 beta 1952 1958 1955 1980 C1' A B 95 beta 1975 1981 1978 2002 C1' G B 96 beta 1997 2003 2000 2025 C1' G B 97 beta 2020 2026 2023 2048 C1' A B 98 beta 2043 2049 2046 2070 C1' C B 99 beta 2065 2071 2068 2090 C1' U B 100 beta 2085 2091 2088 2110 C1' G B 101 beta 2105 2111 2108 2133 C1' G B 102 beta 2128 2134 2131 2156 C1' U B 103 2151 2154 2168 C1' A B 104 beta 2163 2169 2166 2190 C1' A B 105 beta 2185 2191 2188 2212 C1' A B 106 beta 2207 2213 2210 2234 C1' A B 107 beta 2229 2235 2232 2256 C1' C B 108 beta 2251 2257 2254 2276 C1' C B 109 beta 2271 2277 2274 2296 C1' A B 110 beta 2291 2297 2294 2318 C1' C B 111 beta 2313 2319 2316 2338 C1' A B 112 beta 2333 2339 2336 2360 C1' G B 113 beta 2355 2361 2358 2383 C1' G B 114 beta 2378 2384 2381 2406 C1' C B 115 beta 2401 2407 2404 2426 C1' G B 116 beta 2421 2427 2424 2449 C1' A B 117 beta 2444 2450 2447 2471 C1' C B 118 beta 2466 2472 2469 2491 C1' U B 119 beta 2486 2492 2489 2511 C1' G B 120 beta 2506 2512 2509 2534 C1' U B 121 beta 2529 2535 2532 2554 C1' G B 122 beta 2549 2555 2552 2577 C1' G B 123 beta 2572 2578 2575 2600 C1' C B 124 beta 2595 2601 2598 2620 C1' A B 125 beta 2615 2621 2618 2642 C1' U B 126 beta 2637 2643 2640 2662 C1' A B 127 beta 2657 2663 2660 2684 C1' G B 128 beta 2679 2685 2682 2707 C1' A B 129 beta 2702 2708 2705 2729 C1' G B 130 beta 2724 2730 2727 2752 C1' C B 131 beta 2747 2753 2750 2772 C1' A B 132 beta 2767 2773 2770 2794 C1' G B 133 beta 2789 2795 2792 2817 C1' U B 134 beta 2812 2818 2815 2837 C1' C B 135 beta 2832 2838 2835 2857 C1' C B 136 beta 2852 2858 2855 2877 C1' G B 137 beta 2872 2878 2875 2900 C1' G B 138 beta 2895 2901 2898 2923 C1' G B 139 beta 2918 2924 2921 2946 C1' C B 140 beta 2941 2947 2944 2966 C1' A B 141 beta 2961 2967 2964 2988 C1' G B 142 beta 2983 2989 2986 3011 C1' G B 143 beta 3006 3012 3009 3034 C1' A B 144 beta 3029 3035 3032 3056 C1' A B 145 beta 3051 3057 3054 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' DA A -1 8 5 28 C2' G A 1 OK 30 26 29 51 C2' C A 2 OK 53 49 52 71 C2' G A 3 OK 73 69 72 94 C2' C A 4 OK 96 92 95 114 C2' C A 5 OK 116 112 115 134 C2' U A 6 OK 136 132 135 146 C2' G A 7 OK 148 144 147 169 C2' G A 8 OK 171 167 170 192 C2' A A 9 OK 194 190 193 214 C2' C A 10 OK 216 212 215 234 C2' U A 11 OK 236 232 235 254 C2' U A 12 OK 256 252 255 274 C2' A A 13 OK 276 272 275 296 C2' A A 14 OK 298 294 297 318 C2' A A 15 OK 320 316 319 340 C2' G A 16 OK 342 338 341 363 C2' C A 17 OK 365 361 364 383 C2' C A 18 OK 385 381 384 403 C2' A A 19 OK 405 401 404 425 C2' U A 20 OK 427 423 426 446 C2' G B 23 OK 448 444 447 469 C2' G B 24 OK 471 467 470 492 C2' C B 25 OK 494 490 493 512 C2' U B 26 OK 514 510 513 532 C2' U B 27 OK 534 530 533 552 C2' U B 28 OK 554 550 553 572 C2' A B 29 OK 574 570 573 594 C2' A B 30 OK 596 592 595 616 C2' G B 31 OK 618 614 617 639 C2' U B 32 OK 641 637 640 659 C2' U B 33 OK 661 657 660 679 C2' G B 34 OK 681 677 680 702 C2' A B 35 OK 704 700 703 724 C2' C B 36 OK 726 722 725 744 C2' G B 37 OK 746 742 745 767 C2' A B 38 OK 769 765 768 789 C2' G B 39 OK 791 787 790 812 C2' G B 40 OK 814 810 813 835 C2' G B 41 OK 837 833 836 858 C2' C B 42 OK 860 856 859 878 C2' A B 43 OK 880 876 879 900 C2' G B 44 OK 902 898 901 923 C2' G B 45 OK 925 921 924 946 C2' G B 46 OK 948 944 947 969 C2' U B 47 OK 971 967 970 989 C2' U B 48 OK 991 987 990 1009 C2' U B 49 OK 1011 1007 1010 1021 C2' A B 50 OK 1023 1019 1022 1043 C2' U B 51 OK 1045 1041 1044 1063 C2' C B 52 OK 1065 1061 1064 1083 C2' G B 53 OK 1085 1081 1084 1106 C2' A B 54 OK 1108 1104 1107 1128 C2' G B 55 OK 1130 1126 1129 1151 C2' A B 56 OK 1153 1149 1152 1173 C2' C B 57 OK 1175 1171 1174 1193 C2' A B 58 OK 1195 1191 1194 1215 C2' U B 59 OK 1217 1213 1216 1235 C2' C B 60 OK 1237 1233 1236 1255 C2' G B 61 OK 1257 1253 1256 1278 C2' G B 62 OK 1280 1276 1279 1301 C2' C B 63 OK 1303 1299 1302 1321 C2' G B 64 OK 1323 1319 1322 1344 C2' G B 65 OK 1346 1342 1345 1367 C2' G B 66 OK 1369 1365 1368 1390 C2' U B 67 OK 1392 1388 1391 1410 C2' G B 68 OK 1412 1408 1411 1433 C2' C B 69 OK 1435 1431 1434 1453 C2' C B 70 OK 1455 1451 1454 1473 C2' C B 71 OK 1475 1471 1474 1493 C2' U B 72 OK 1495 1491 1494 1513 C2' G B 73 OK 1515 1511 1514 1536 C2' C B 74 OK 1538 1534 1537 1556 C2' G B 75 OK 1558 1554 1557 1579 C2' G B 76 OK 1581 1577 1580 1602 C2' U B 77 OK 1604 1600 1603 1622 C2' C B 78 OK 1624 1620 1623 1642 C2' U B 79 OK 1644 1640 1643 1662 C2' U B 80 OK 1664 1660 1663 1682 C2' C B 81 OK 1684 1680 1683 1702 C2' C B 82 OK 1704 1700 1703 1722 C2' U B 83 OK 1724 1720 1723 1742 C2' G B 84 OK 1744 1740 1743 1765 C2' C B 85 OK 1767 1763 1766 1785 C2' G B 86 OK 1787 1783 1786 1808 C2' A B 87 OK 1810 1806 1809 1830 C2' C B 88 OK 1832 1828 1831 1850 C2' C B 89 OK 1852 1848 1851 1870 C2' G B 90 OK 1872 1868 1871 1893 C2' U B 91 OK 1895 1891 1894 1913 C2' U B 92 OK 1915 1911 1914 1933 C2' A B 93 OK 1935 1931 1934 1955 C2' G B 94 OK 1957 1953 1956 1978 C2' A B 95 OK 1980 1976 1979 2000 C2' G B 96 OK 2002 1998 2001 2023 C2' G B 97 OK 2025 2021 2024 2046 C2' A B 98 OK 2048 2044 2047 2068 C2' C B 99 OK 2070 2066 2069 2088 C2' U B 100 OK 2090 2086 2089 2108 C2' G B 101 OK 2110 2106 2109 2131 C2' G B 102 OK 2133 2129 2132 2154 C2' U B 103 OK 2156 2152 2155 2166 C2' A B 104 OK 2168 2164 2167 2188 C2' A B 105 OK 2190 2186 2189 2210 C2' A B 106 OK 2212 2208 2211 2232 C2' A B 107 OK 2234 2230 2233 2254 C2' C B 108 OK 2256 2252 2255 2274 C2' C B 109 OK 2276 2272 2275 2294 C2' A B 110 OK 2296 2292 2295 2316 C2' C B 111 OK 2318 2314 2317 2336 C2' A B 112 OK 2338 2334 2337 2358 C2' G B 113 OK 2360 2356 2359 2381 C2' G B 114 OK 2383 2379 2382 2404 C2' C B 115 OK 2406 2402 2405 2424 C2' G B 116 OK 2426 2422 2425 2447 C2' A B 117 OK 2449 2445 2448 2469 C2' C B 118 OK 2471 2467 2470 2489 C2' U B 119 OK 2491 2487 2490 2509 C2' G B 120 OK 2511 2507 2510 2532 C2' U B 121 OK 2534 2530 2533 2552 C2' G B 122 OK 2554 2550 2553 2575 C2' G B 123 OK 2577 2573 2576 2598 C2' C B 124 OK 2600 2596 2599 2618 C2' A B 125 OK 2620 2616 2619 2640 C2' U B 126 OK 2642 2638 2641 2660 C2' A B 127 OK 2662 2658 2661 2682 C2' G B 128 OK 2684 2680 2683 2705 C2' A B 129 OK 2707 2703 2706 2727 C2' G B 130 OK 2729 2725 2728 2750 C2' C B 131 OK 2752 2748 2751 2770 C2' A B 132 OK 2772 2768 2771 2792 C2' G B 133 OK 2794 2790 2793 2815 C2' U B 134 OK 2817 2813 2816 2835 C2' C B 135 OK 2837 2833 2836 2855 C2' C B 136 OK 2857 2853 2856 2875 C2' G B 137 OK 2877 2873 2876 2898 C2' G B 138 OK 2900 2896 2899 2921 C2' G B 139 OK 2923 2919 2922 2944 C2' C B 140 OK 2946 2942 2945 2964 C2' A B 141 OK 2966 2962 2965 2986 C2' G B 142 OK 2988 2984 2987 3009 C2' G B 143 OK 3011 3007 3010 3032 C2' A B 144 OK 3034 3030 3033 3054 C2' A B 145 OK 3056 3052 3055 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' DA A -1 OK 3 6 7 26 C3' G A 1 OK 24 27 28 49 C3' C A 2 OK 47 50 51 69 C3' G A 3 OK 67 70 71 92 C3' C A 4 OK 90 93 94 112 C3' C A 5 OK 110 113 114 132 C3' U A 6 OK 130 133 134 144 C3' G A 7 OK 142 145 146 167 C3' G A 8 OK 165 168 169 190 C3' A A 9 OK 188 191 192 212 C3' C A 10 OK 210 213 214 232 C3' U A 11 OK 230 233 234 252 C3' U A 12 OK 250 253 254 272 C3' A A 13 OK 270 273 274 294 C3' A A 14 OK 292 295 296 316 C3' A A 15 OK 314 317 318 338 C3' G A 16 OK 336 339 340 361 C3' C A 17 OK 359 362 363 381 C3' C A 18 OK 379 382 383 401 C3' A A 19 OK 399 402 403 423 C3' U A 20 OK 421 424 425 444 C3' G B 23 OK 442 445 446 467 C3' G B 24 OK 465 468 469 490 C3' C B 25 OK 488 491 492 510 C3' U B 26 OK 508 511 512 530 C3' U B 27 OK 528 531 532 550 C3' U B 28 OK 548 551 552 570 C3' A B 29 OK 568 571 572 592 C3' A B 30 OK 590 593 594 614 C3' G B 31 OK 612 615 616 637 C3' U B 32 OK 635 638 639 657 C3' U B 33 OK 655 658 659 677 C3' G B 34 OK 675 678 679 700 C3' A B 35 OK 698 701 702 722 C3' C B 36 OK 720 723 724 742 C3' G B 37 OK 740 743 744 765 C3' A B 38 OK 763 766 767 787 C3' G B 39 OK 785 788 789 810 C3' G B 40 OK 808 811 812 833 C3' G B 41 OK 831 834 835 856 C3' C B 42 OK 854 857 858 876 C3' A B 43 OK 874 877 878 898 C3' G B 44 OK 896 899 900 921 C3' G B 45 OK 919 922 923 944 C3' G B 46 OK 942 945 946 967 C3' U B 47 OK 965 968 969 987 C3' U B 48 OK 985 988 989 1007 C3' U B 49 OK 1005 1008 1009 1019 C3' A B 50 OK 1017 1020 1021 1041 C3' U B 51 OK 1039 1042 1043 1061 C3' C B 52 OK 1059 1062 1063 1081 C3' G B 53 OK 1079 1082 1083 1104 C3' A B 54 OK 1102 1105 1106 1126 C3' G B 55 OK 1124 1127 1128 1149 C3' A B 56 OK 1147 1150 1151 1171 C3' C B 57 OK 1169 1172 1173 1191 C3' A B 58 OK 1189 1192 1193 1213 C3' U B 59 OK 1211 1214 1215 1233 C3' C B 60 OK 1231 1234 1235 1253 C3' G B 61 OK 1251 1254 1255 1276 C3' G B 62 OK 1274 1277 1278 1299 C3' C B 63 OK 1297 1300 1301 1319 C3' G B 64 OK 1317 1320 1321 1342 C3' G B 65 OK 1340 1343 1344 1365 C3' G B 66 OK 1363 1366 1367 1388 C3' U B 67 OK 1386 1389 1390 1408 C3' G B 68 OK 1406 1409 1410 1431 C3' C B 69 OK 1429 1432 1433 1451 C3' C B 70 OK 1449 1452 1453 1471 C3' C B 71 OK 1469 1472 1473 1491 C3' U B 72 OK 1489 1492 1493 1511 C3' G B 73 OK 1509 1512 1513 1534 C3' C B 74 OK 1532 1535 1536 1554 C3' G B 75 OK 1552 1555 1556 1577 C3' G B 76 OK 1575 1578 1579 1600 C3' U B 77 OK 1598 1601 1602 1620 C3' C B 78 OK 1618 1621 1622 1640 C3' U B 79 OK 1638 1641 1642 1660 C3' U B 80 OK 1658 1661 1662 1680 C3' C B 81 OK 1678 1681 1682 1700 C3' C B 82 OK 1698 1701 1702 1720 C3' U B 83 OK 1718 1721 1722 1740 C3' G B 84 OK 1738 1741 1742 1763 C3' C B 85 OK 1761 1764 1765 1783 C3' G B 86 OK 1781 1784 1785 1806 C3' A B 87 OK 1804 1807 1808 1828 C3' C B 88 OK 1826 1829 1830 1848 C3' C B 89 OK 1846 1849 1850 1868 C3' G B 90 OK 1866 1869 1870 1891 C3' U B 91 OK 1889 1892 1893 1911 C3' U B 92 OK 1909 1912 1913 1931 C3' A B 93 OK 1929 1932 1933 1953 C3' G B 94 OK 1951 1954 1955 1976 C3' A B 95 OK 1974 1977 1978 1998 C3' G B 96 OK 1996 1999 2000 2021 C3' G B 97 OK 2019 2022 2023 2044 C3' A B 98 OK 2042 2045 2046 2066 C3' C B 99 OK 2064 2067 2068 2086 C3' U B 100 OK 2084 2087 2088 2106 C3' G B 101 OK 2104 2107 2108 2129 C3' G B 102 OK 2127 2130 2131 2152 C3' U B 103 OK 2150 2153 2154 2164 C3' A B 104 OK 2162 2165 2166 2186 C3' A B 105 OK 2184 2187 2188 2208 C3' A B 106 OK 2206 2209 2210 2230 C3' A B 107 OK 2228 2231 2232 2252 C3' C B 108 OK 2250 2253 2254 2272 C3' C B 109 OK 2270 2273 2274 2292 C3' A B 110 OK 2290 2293 2294 2314 C3' C B 111 OK 2312 2315 2316 2334 C3' A B 112 OK 2332 2335 2336 2356 C3' G B 113 OK 2354 2357 2358 2379 C3' G B 114 OK 2377 2380 2381 2402 C3' C B 115 OK 2400 2403 2404 2422 C3' G B 116 OK 2420 2423 2424 2445 C3' A B 117 OK 2443 2446 2447 2467 C3' C B 118 OK 2465 2468 2469 2487 C3' U B 119 OK 2485 2488 2489 2507 C3' G B 120 OK 2505 2508 2509 2530 C3' U B 121 OK 2528 2531 2532 2550 C3' G B 122 OK 2548 2551 2552 2573 C3' G B 123 OK 2571 2574 2575 2596 C3' C B 124 OK 2594 2597 2598 2616 C3' A B 125 OK 2614 2617 2618 2638 C3' U B 126 OK 2636 2639 2640 2658 C3' A B 127 OK 2656 2659 2660 2680 C3' G B 128 OK 2678 2681 2682 2703 C3' A B 129 OK 2701 2704 2705 2725 C3' G B 130 OK 2723 2726 2727 2748 C3' C B 131 OK 2746 2749 2750 2768 C3' A B 132 OK 2766 2769 2770 2790 C3' G B 133 OK 2788 2791 2792 2813 C3' U B 134 OK 2811 2814 2815 2833 C3' C B 135 OK 2831 2834 2835 2853 C3' C B 136 OK 2851 2854 2855 2873 C3' G B 137 OK 2871 2874 2875 2896 C3' G B 138 OK 2894 2897 2898 2919 C3' G B 139 OK 2917 2920 2921 2942 C3' C B 140 OK 2940 2943 2944 2962 C3' A B 141 OK 2960 2963 2964 2984 C3' G B 142 OK 2982 2985 2986 3007 C3' G B 143 OK 3005 3008 3009 3030 C3' A B 144 OK 3028 3031 3032 3052 C3' A B 145 OK 3050 3053 3054 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' DA A -1 OK 5 2 4 24 C4' G A 1 OK 26 23 25 47 C4' C A 2 OK 49 46 48 67 C4' G A 3 OK 69 66 68 90 C4' C A 4 OK 92 89 91 110 C4' C A 5 OK 112 109 111 130 C4' U A 6 OK 132 129 131 142 C4' G A 7 OK 144 141 143 165 C4' G A 8 OK 167 164 166 188 C4' A A 9 OK 190 187 189 210 C4' C A 10 OK 212 209 211 230 C4' U A 11 OK 232 229 231 250 C4' U A 12 OK 252 249 251 270 C4' A A 13 OK 272 269 271 292 C4' A A 14 OK 294 291 293 314 C4' A A 15 OK 316 313 315 336 C4' G A 16 OK 338 335 337 359 C4' C A 17 OK 361 358 360 379 C4' C A 18 OK 381 378 380 399 C4' A A 19 OK 401 398 400 421 C4' U A 20 OK 423 420 422 442 C4' G B 23 OK 444 441 443 465 C4' G B 24 OK 467 464 466 488 C4' C B 25 OK 490 487 489 508 C4' U B 26 OK 510 507 509 528 C4' U B 27 OK 530 527 529 548 C4' U B 28 OK 550 547 549 568 C4' A B 29 OK 570 567 569 590 C4' A B 30 OK 592 589 591 612 C4' G B 31 OK 614 611 613 635 C4' U B 32 OK 637 634 636 655 C4' U B 33 OK 657 654 656 675 C4' G B 34 OK 677 674 676 698 C4' A B 35 OK 700 697 699 720 C4' C B 36 OK 722 719 721 740 C4' G B 37 OK 742 739 741 763 C4' A B 38 OK 765 762 764 785 C4' G B 39 OK 787 784 786 808 C4' G B 40 OK 810 807 809 831 C4' G B 41 OK 833 830 832 854 C4' C B 42 OK 856 853 855 874 C4' A B 43 OK 876 873 875 896 C4' G B 44 OK 898 895 897 919 C4' G B 45 OK 921 918 920 942 C4' G B 46 OK 944 941 943 965 C4' U B 47 OK 967 964 966 985 C4' U B 48 OK 987 984 986 1005 C4' U B 49 OK 1007 1004 1006 1017 C4' A B 50 OK 1019 1016 1018 1039 C4' U B 51 OK 1041 1038 1040 1059 C4' C B 52 OK 1061 1058 1060 1079 C4' G B 53 OK 1081 1078 1080 1102 C4' A B 54 OK 1104 1101 1103 1124 C4' G B 55 OK 1126 1123 1125 1147 C4' A B 56 OK 1149 1146 1148 1169 C4' C B 57 OK 1171 1168 1170 1189 C4' A B 58 OK 1191 1188 1190 1211 C4' U B 59 OK 1213 1210 1212 1231 C4' C B 60 OK 1233 1230 1232 1251 C4' G B 61 OK 1253 1250 1252 1274 C4' G B 62 OK 1276 1273 1275 1297 C4' C B 63 OK 1299 1296 1298 1317 C4' G B 64 OK 1319 1316 1318 1340 C4' G B 65 OK 1342 1339 1341 1363 C4' G B 66 OK 1365 1362 1364 1386 C4' U B 67 OK 1388 1385 1387 1406 C4' G B 68 OK 1408 1405 1407 1429 C4' C B 69 OK 1431 1428 1430 1449 C4' C B 70 OK 1451 1448 1450 1469 C4' C B 71 OK 1471 1468 1470 1489 C4' U B 72 OK 1491 1488 1490 1509 C4' G B 73 OK 1511 1508 1510 1532 C4' C B 74 OK 1534 1531 1533 1552 C4' G B 75 OK 1554 1551 1553 1575 C4' G B 76 OK 1577 1574 1576 1598 C4' U B 77 OK 1600 1597 1599 1618 C4' C B 78 OK 1620 1617 1619 1638 C4' U B 79 OK 1640 1637 1639 1658 C4' U B 80 OK 1660 1657 1659 1678 C4' C B 81 OK 1680 1677 1679 1698 C4' C B 82 OK 1700 1697 1699 1718 C4' U B 83 OK 1720 1717 1719 1738 C4' G B 84 OK 1740 1737 1739 1761 C4' C B 85 OK 1763 1760 1762 1781 C4' G B 86 OK 1783 1780 1782 1804 C4' A B 87 OK 1806 1803 1805 1826 C4' C B 88 OK 1828 1825 1827 1846 C4' C B 89 OK 1848 1845 1847 1866 C4' G B 90 OK 1868 1865 1867 1889 C4' U B 91 OK 1891 1888 1890 1909 C4' U B 92 OK 1911 1908 1910 1929 C4' A B 93 OK 1931 1928 1930 1951 C4' G B 94 OK 1953 1950 1952 1974 C4' A B 95 OK 1976 1973 1975 1996 C4' G B 96 OK 1998 1995 1997 2019 C4' G B 97 OK 2021 2018 2020 2042 C4' A B 98 OK 2044 2041 2043 2064 C4' C B 99 OK 2066 2063 2065 2084 C4' U B 100 OK 2086 2083 2085 2104 C4' G B 101 OK 2106 2103 2105 2127 C4' G B 102 OK 2129 2126 2128 2150 C4' U B 103 OK 2152 2149 2151 2162 C4' A B 104 OK 2164 2161 2163 2184 C4' A B 105 OK 2186 2183 2185 2206 C4' A B 106 OK 2208 2205 2207 2228 C4' A B 107 OK 2230 2227 2229 2250 C4' C B 108 OK 2252 2249 2251 2270 C4' C B 109 OK 2272 2269 2271 2290 C4' A B 110 OK 2292 2289 2291 2312 C4' C B 111 OK 2314 2311 2313 2332 C4' A B 112 OK 2334 2331 2333 2354 C4' G B 113 OK 2356 2353 2355 2377 C4' G B 114 OK 2379 2376 2378 2400 C4' C B 115 OK 2402 2399 2401 2420 C4' G B 116 OK 2422 2419 2421 2443 C4' A B 117 OK 2445 2442 2444 2465 C4' C B 118 OK 2467 2464 2466 2485 C4' U B 119 OK 2487 2484 2486 2505 C4' G B 120 OK 2507 2504 2506 2528 C4' U B 121 OK 2530 2527 2529 2548 C4' G B 122 OK 2550 2547 2549 2571 C4' G B 123 OK 2573 2570 2572 2594 C4' C B 124 OK 2596 2593 2595 2614 C4' A B 125 OK 2616 2613 2615 2636 C4' U B 126 OK 2638 2635 2637 2656 C4' A B 127 OK 2658 2655 2657 2678 C4' G B 128 OK 2680 2677 2679 2701 C4' A B 129 OK 2703 2700 2702 2723 C4' G B 130 OK 2725 2722 2724 2746 C4' C B 131 OK 2748 2745 2747 2766 C4' A B 132 OK 2768 2765 2767 2788 C4' G B 133 OK 2790 2787 2789 2811 C4' U B 134 OK 2813 2810 2812 2831 C4' C B 135 OK 2833 2830 2832 2851 C4' C B 136 OK 2853 2850 2852 2871 C4' G B 137 OK 2873 2870 2872 2894 C4' G B 138 OK 2896 2893 2895 2917 C4' G B 139 OK 2919 2916 2918 2940 C4' C B 140 OK 2942 2939 2941 2960 C4' A B 141 OK 2962 2959 2961 2982 C4' G B 142 OK 2984 2981 2983 3005 C4' G B 143 OK 3007 3004 3006 3028 C4' A B 144 OK 3030 3027 3029 3050 C4' A B 145 OK 3052 3049 3051 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' DA A -1 1 3 23 C5' G A 1 22 24 46 C5' C A 2 45 47 66 C5' G A 3 65 67 89 C5' C A 4 88 90 109 C5' C A 5 108 110 129 C5' U A 6 128 130 141 C5' G A 7 140 142 164 C5' G A 8 163 165 187 C5' A A 9 186 188 209 C5' C A 10 208 210 229 C5' U A 11 228 230 249 C5' U A 12 248 250 269 C5' A A 13 268 270 291 C5' A A 14 290 292 313 C5' A A 15 312 314 335 C5' G A 16 334 336 358 C5' C A 17 357 359 378 C5' C A 18 377 379 398 C5' A A 19 397 399 420 C5' U A 20 419 421 441 C5' G B 23 440 442 464 C5' G B 24 463 465 487 C5' C B 25 486 488 507 C5' U B 26 506 508 527 C5' U B 27 526 528 547 C5' U B 28 546 548 567 C5' A B 29 566 568 589 C5' A B 30 588 590 611 C5' G B 31 610 612 634 C5' U B 32 633 635 654 C5' U B 33 653 655 674 C5' G B 34 673 675 697 C5' A B 35 696 698 719 C5' C B 36 718 720 739 C5' G B 37 738 740 762 C5' A B 38 761 763 784 C5' G B 39 783 785 807 C5' G B 40 806 808 830 C5' G B 41 829 831 853 C5' C B 42 852 854 873 C5' A B 43 872 874 895 C5' G B 44 894 896 918 C5' G B 45 917 919 941 C5' G B 46 940 942 964 C5' U B 47 963 965 984 C5' U B 48 983 985 1004 C5' U B 49 1003 1005 1016 C5' A B 50 1015 1017 1038 C5' U B 51 1037 1039 1058 C5' C B 52 1057 1059 1078 C5' G B 53 1077 1079 1101 C5' A B 54 1100 1102 1123 C5' G B 55 1122 1124 1146 C5' A B 56 1145 1147 1168 C5' C B 57 1167 1169 1188 C5' A B 58 1187 1189 1210 C5' U B 59 1209 1211 1230 C5' C B 60 1229 1231 1250 C5' G B 61 1249 1251 1273 C5' G B 62 1272 1274 1296 C5' C B 63 1295 1297 1316 C5' G B 64 1315 1317 1339 C5' G B 65 1338 1340 1362 C5' G B 66 1361 1363 1385 C5' U B 67 1384 1386 1405 C5' G B 68 1404 1406 1428 C5' C B 69 1427 1429 1448 C5' C B 70 1447 1449 1468 C5' C B 71 1467 1469 1488 C5' U B 72 1487 1489 1508 C5' G B 73 1507 1509 1531 C5' C B 74 1530 1532 1551 C5' G B 75 1550 1552 1574 C5' G B 76 1573 1575 1597 C5' U B 77 1596 1598 1617 C5' C B 78 1616 1618 1637 C5' U B 79 1636 1638 1657 C5' U B 80 1656 1658 1677 C5' C B 81 1676 1678 1697 C5' C B 82 1696 1698 1717 C5' U B 83 1716 1718 1737 C5' G B 84 1736 1738 1760 C5' C B 85 1759 1761 1780 C5' G B 86 1779 1781 1803 C5' A B 87 1802 1804 1825 C5' C B 88 1824 1826 1845 C5' C B 89 1844 1846 1865 C5' G B 90 1864 1866 1888 C5' U B 91 1887 1889 1908 C5' U B 92 1907 1909 1928 C5' A B 93 1927 1929 1950 C5' G B 94 1949 1951 1973 C5' A B 95 1972 1974 1995 C5' G B 96 1994 1996 2018 C5' G B 97 2017 2019 2041 C5' A B 98 2040 2042 2063 C5' C B 99 2062 2064 2083 C5' U B 100 2082 2084 2103 C5' G B 101 2102 2104 2126 C5' G B 102 2125 2127 2149 C5' U B 103 2148 2150 2161 C5' A B 104 2160 2162 2183 C5' A B 105 2182 2184 2205 C5' A B 106 2204 2206 2227 C5' A B 107 2226 2228 2249 C5' C B 108 2248 2250 2269 C5' C B 109 2268 2270 2289 C5' A B 110 2288 2290 2311 C5' C B 111 2310 2312 2331 C5' A B 112 2330 2332 2353 C5' G B 113 2352 2354 2376 C5' G B 114 2375 2377 2399 C5' C B 115 2398 2400 2419 C5' G B 116 2418 2420 2442 C5' A B 117 2441 2443 2464 C5' C B 118 2463 2465 2484 C5' U B 119 2483 2485 2504 C5' G B 120 2503 2505 2527 C5' U B 121 2526 2528 2547 C5' G B 122 2546 2548 2570 C5' G B 123 2569 2571 2593 C5' C B 124 2592 2594 2613 C5' A B 125 2612 2614 2635 C5' U B 126 2634 2636 2655 C5' A B 127 2654 2656 2677 C5' G B 128 2676 2678 2700 C5' A B 129 2699 2701 2722 C5' G B 130 2721 2723 2745 C5' C B 131 2744 2746 2765 C5' A B 132 2764 2766 2787 C5' G B 133 2786 2788 2810 C5' U B 134 2809 2811 2830 C5' C B 135 2829 2831 2850 C5' C B 136 2849 2851 2870 C5' G B 137 2869 2871 2893 C5' G B 138 2892 2894 2916 C5' G B 139 2915 2917 2939 C5' C B 140 2938 2940 2959 C5' A B 141 2958 2960 2981 C5' G B 142 2980 2982 3004 C5' G B 143 3003 3005 3027 C5' A B 144 3026 3028 3049 C5' A B 145 3048 3050 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 19 P G A 1 distorted distorted 6 20 21 22 42 P C A 2 distorted distorted 27 43 44 45 62 P G A 3 distorted distorted 50 63 64 65 85 P C A 4 distorted distorted 70 86 87 88 105 P C A 5 distorted distorted 93 106 107 108 125 P U A 6 distorted distorted 113 126 127 128 137 P G A 7 distorted distorted 133 138 139 140 160 P G A 8 distorted distorted 145 161 162 163 183 P A A 9 distorted distorted 168 184 185 186 205 P C A 10 distorted distorted 191 206 207 208 225 P U A 11 distorted distorted 213 226 227 228 245 P U A 12 distorted distorted 233 246 247 248 265 P A A 13 distorted distorted 253 266 267 268 287 P A A 14 distorted distorted 273 288 289 290 309 P A A 15 distorted distorted 295 310 311 312 331 P G A 16 distorted distorted 317 332 333 334 354 P C A 17 distorted distorted 339 355 356 357 374 P C A 18 distorted distorted 362 375 376 377 394 P A A 19 distorted distorted 382 395 396 397 416 P U A 20 distorted distorted 402 417 418 419 437 P G B 23 distorted distorted 438 439 440 460 P G B 24 distorted distorted 445 461 462 463 483 P C B 25 distorted distorted 468 484 485 486 503 P U B 26 distorted distorted 491 504 505 506 523 P U B 27 distorted distorted 511 524 525 526 543 P U B 28 distorted distorted 531 544 545 546 563 P A B 29 distorted distorted 551 564 565 566 585 P A B 30 distorted distorted 571 586 587 588 607 P G B 31 distorted distorted 593 608 609 610 630 P U B 32 distorted distorted 615 631 632 633 650 P U B 33 distorted distorted 638 651 652 653 670 P G B 34 distorted distorted 658 671 672 673 693 P A B 35 distorted distorted 678 694 695 696 715 P C B 36 distorted distorted 701 716 717 718 735 P G B 37 distorted distorted 723 736 737 738 758 P A B 38 distorted distorted 743 759 760 761 780 P G B 39 distorted distorted 766 781 782 783 803 P G B 40 distorted distorted 788 804 805 806 826 P G B 41 distorted distorted 811 827 828 829 849 P C B 42 distorted distorted 834 850 851 852 869 P A B 43 distorted distorted 857 870 871 872 891 P G B 44 distorted distorted 877 892 893 894 914 P G B 45 distorted distorted 899 915 916 917 937 P G B 46 distorted distorted 922 938 939 940 960 P U B 47 distorted distorted 945 961 962 963 980 P U B 48 distorted distorted 968 981 982 983 1000 P U B 49 distorted distorted 988 1001 1002 1003 1012 P A B 50 OK OK 1008 1013 1014 1015 1034 P U B 51 distorted distorted 1020 1035 1036 1037 1054 P C B 52 distorted distorted 1042 1055 1056 1057 1074 P G B 53 distorted distorted 1062 1075 1076 1077 1097 P A B 54 distorted distorted 1082 1098 1099 1100 1119 P G B 55 distorted distorted 1105 1120 1121 1122 1142 P A B 56 distorted distorted 1127 1143 1144 1145 1164 P C B 57 distorted distorted 1150 1165 1166 1167 1184 P A B 58 distorted distorted 1172 1185 1186 1187 1206 P U B 59 distorted distorted 1192 1207 1208 1209 1226 P C B 60 distorted distorted 1214 1227 1228 1229 1246 P G B 61 distorted distorted 1234 1247 1248 1249 1269 P G B 62 distorted distorted 1254 1270 1271 1272 1292 P C B 63 distorted distorted 1277 1293 1294 1295 1312 P G B 64 distorted distorted 1300 1313 1314 1315 1335 P G B 65 distorted distorted 1320 1336 1337 1338 1358 P G B 66 distorted distorted 1343 1359 1360 1361 1381 P U B 67 distorted distorted 1366 1382 1383 1384 1401 P G B 68 distorted distorted 1389 1402 1403 1404 1424 P C B 69 distorted distorted 1409 1425 1426 1427 1444 P C B 70 distorted distorted 1432 1445 1446 1447 1464 P C B 71 distorted distorted 1452 1465 1466 1467 1484 P U B 72 distorted distorted 1472 1485 1486 1487 1504 P G B 73 distorted distorted 1492 1505 1506 1507 1527 P C B 74 distorted distorted 1512 1528 1529 1530 1547 P G B 75 distorted distorted 1535 1548 1549 1550 1570 P G B 76 distorted distorted 1555 1571 1572 1573 1593 P U B 77 distorted distorted 1578 1594 1595 1596 1613 P C B 78 distorted distorted 1601 1614 1615 1616 1633 P U B 79 distorted distorted 1621 1634 1635 1636 1653 P U B 80 distorted distorted 1641 1654 1655 1656 1673 P C B 81 distorted distorted 1661 1674 1675 1676 1693 P C B 82 distorted distorted 1681 1694 1695 1696 1713 P U B 83 distorted distorted 1701 1714 1715 1716 1733 P G B 84 distorted distorted 1721 1734 1735 1736 1756 P C B 85 distorted distorted 1741 1757 1758 1759 1776 P G B 86 distorted distorted 1764 1777 1778 1779 1799 P A B 87 distorted distorted 1784 1800 1801 1802 1821 P C B 88 distorted distorted 1807 1822 1823 1824 1841 P C B 89 distorted distorted 1829 1842 1843 1844 1861 P G B 90 distorted distorted 1849 1862 1863 1864 1884 P U B 91 distorted distorted 1869 1885 1886 1887 1904 P U B 92 distorted distorted 1892 1905 1906 1907 1924 P A B 93 distorted distorted 1912 1925 1926 1927 1946 P G B 94 distorted distorted 1932 1947 1948 1949 1969 P A B 95 distorted distorted 1954 1970 1971 1972 1991 P G B 96 distorted distorted 1977 1992 1993 1994 2014 P G B 97 distorted distorted 1999 2015 2016 2017 2037 P A B 98 distorted distorted 2022 2038 2039 2040 2059 P C B 99 distorted distorted 2045 2060 2061 2062 2079 P U B 100 distorted distorted 2067 2080 2081 2082 2099 P G B 101 distorted distorted 2087 2100 2101 2102 2122 P G B 102 distorted distorted 2107 2123 2124 2125 2145 P U B 103 distorted distorted 2130 2146 2147 2148 2157 P A B 104 distorted distorted 2153 2158 2159 2160 2179 P A B 105 distorted distorted 2165 2180 2181 2182 2201 P A B 106 distorted distorted 2187 2202 2203 2204 2223 P A B 107 distorted distorted 2209 2224 2225 2226 2245 P C B 108 distorted distorted 2231 2246 2247 2248 2265 P C B 109 distorted distorted 2253 2266 2267 2268 2285 P A B 110 distorted distorted 2273 2286 2287 2288 2307 P C B 111 distorted distorted 2293 2308 2309 2310 2327 P A B 112 distorted distorted 2315 2328 2329 2330 2349 P G B 113 distorted distorted 2335 2350 2351 2352 2372 P G B 114 distorted distorted 2357 2373 2374 2375 2395 P C B 115 distorted distorted 2380 2396 2397 2398 2415 P G B 116 distorted distorted 2403 2416 2417 2418 2438 P A B 117 distorted distorted 2423 2439 2440 2441 2460 P C B 118 distorted distorted 2446 2461 2462 2463 2480 P U B 119 distorted distorted 2468 2481 2482 2483 2500 P G B 120 distorted distorted 2488 2501 2502 2503 2523 P U B 121 distorted distorted 2508 2524 2525 2526 2543 P G B 122 distorted distorted 2531 2544 2545 2546 2566 P G B 123 distorted distorted 2551 2567 2568 2569 2589 P C B 124 distorted distorted 2574 2590 2591 2592 2609 P A B 125 distorted distorted 2597 2610 2611 2612 2631 P U B 126 distorted distorted 2617 2632 2633 2634 2651 P A B 127 distorted distorted 2639 2652 2653 2654 2673 P G B 128 distorted distorted 2659 2674 2675 2676 2696 P A B 129 distorted distorted 2681 2697 2698 2699 2718 P G B 130 distorted distorted 2704 2719 2720 2721 2741 P C B 131 distorted distorted 2726 2742 2743 2744 2761 P A B 132 distorted distorted 2749 2762 2763 2764 2783 P G B 133 distorted distorted 2769 2784 2785 2786 2806 P U B 134 distorted distorted 2791 2807 2808 2809 2826 P C B 135 distorted distorted 2814 2827 2828 2829 2846 P C B 136 distorted distorted 2834 2847 2848 2849 2866 P G B 137 distorted distorted 2854 2867 2868 2869 2889 P G B 138 distorted distorted 2874 2890 2891 2892 2912 P G B 139 distorted distorted 2897 2913 2914 2915 2935 P C B 140 distorted distorted 2920 2936 2937 2938 2955 P A B 141 distorted distorted 2943 2956 2957 2958 2977 P G B 142 distorted distorted 2963 2978 2979 2980 3000 P G B 143 distorted distorted 2985 3001 3002 3003 3023 P A B 144 distorted distorted 3008 3024 3025 3026 3045 P A B 145 distorted distorted 3031 3046 3047 3048 3080 P G6P A 201 3081 3082 ---------------------------------------------------------------------------------