ID code: '2OIU' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' G P 1 beta 7 13 10 35 C1' G P 2 beta 30 36 33 58 C1' A P 3 beta 53 59 56 80 C1' C P 4 beta 75 81 78 100 C1' C P 5 beta 95 101 98 120 C1' U P 6 beta 115 121 118 140 C1' C P 7 beta 135 141 138 160 C1' G P 8 beta 155 161 158 183 C1' G P 9 beta 178 184 181 206 C1' C P 10 beta 201 207 204 226 C1' G P 11 beta 221 227 224 249 C1' A P 12 beta 244 250 247 271 C1' A P 13 beta 266 272 269 293 C1' A P 14 beta 288 294 291 315 C1' G P 15 beta 310 316 313 338 C1' C P 16 beta 333 339 336 358 C1' C P 17 beta 353 359 356 378 C1' G P 18 beta 373 379 376 401 C1' U P 19 beta 396 402 399 421 C1' U P 20 beta 416 422 419 441 C1' C P 21 beta 436 442 439 461 C1' G P 22 beta 456 462 459 484 C1' A P 23 beta 479 485 482 506 C1' C P 24 beta 501 507 504 526 C1' C P 25 beta 521 527 524 546 C1' A P 26 beta 541 547 544 568 C1' G P 27 beta 563 569 566 591 C1' C P 28 beta 586 592 589 611 C1' G P 29 beta 606 612 609 634 C1' A P 30 beta 629 635 632 656 C1' A P 31 beta 651 657 654 678 C1' A P 32 beta 673 679 676 700 C1' G P 33 beta 695 701 698 723 C1' C P 34 beta 718 724 721 743 C1' U P 35 beta 738 744 741 763 C1' C P 36 beta 758 764 761 783 C1' U P 37 beta 778 784 781 803 C1' U P 38 beta 798 804 801 823 C1' A P 39 beta 818 824 821 845 C1' G P 40 beta 840 846 843 868 C1' A P 41 beta 863 869 866 890 C1' C P 42 beta 885 891 888 910 C1' A P 43 beta 905 911 908 932 C1' G P 44 beta 927 933 930 955 C1' G P 45 beta 950 956 953 978 C1' A P 46 beta 973 979 976 1000 C1' G P 47 beta 995 1001 998 1023 C1' G P 48 beta 1018 1024 1021 1046 C1' U P 49 beta 1041 1047 1044 1066 C1' U P 50 beta 1061 1067 1064 1086 C1' A P 51 beta 1081 1087 1084 1108 C1' G P 52 beta 1103 1109 1106 1131 C1' G P 53 beta 1126 1132 1129 1154 C1' U P 54 beta 1149 1155 1152 1174 C1' G P 55 beta 1169 1175 1172 1197 C1' C P 56 beta 1192 1198 1195 1217 C1' U P 57 beta 1212 1218 1215 1237 C1' C P 58 beta 1232 1238 1235 1257 C1' C P 59 beta 1252 1258 1255 1277 C1' G P 60 beta 1272 1278 1275 1300 C1' A P 61 beta 1295 1301 1298 1322 C1' A P 62 beta 1317 1323 1320 1344 C1' A P 63 beta 1339 1345 1342 1366 C1' G P 64 beta 1361 1367 1364 1389 C1' G P 65 beta 1384 1390 1387 1412 C1' A P 66 beta 1407 1413 1410 1434 C1' G P 67 beta 1429 1435 1432 1457 C1' C P 68 beta 1452 1458 1455 1477 C1' A P 69 beta 1472 1478 1475 1499 C1' C P 70 beta 1494 1500 1497 1519 C1' U P 71 beta 1514 1520 1517 1540 C1' G Q 1 beta 1535 1541 1538 1563 C1' G Q 2 beta 1558 1564 1561 1586 C1' A Q 3 beta 1581 1587 1584 1608 C1' C Q 4 beta 1603 1609 1606 1628 C1' C Q 5 beta 1623 1629 1626 1648 C1' U Q 6 beta 1643 1649 1646 1668 C1' C Q 7 beta 1663 1669 1666 1688 C1' G Q 8 beta 1683 1689 1686 1711 C1' G Q 9 beta 1706 1712 1709 1734 C1' C Q 10 beta 1729 1735 1732 1754 C1' G Q 11 beta 1749 1755 1752 1777 C1' A Q 12 beta 1772 1778 1775 1799 C1' A Q 13 beta 1794 1800 1797 1821 C1' A Q 14 beta 1816 1822 1819 1843 C1' G Q 15 beta 1838 1844 1841 1866 C1' C Q 16 beta 1861 1867 1864 1886 C1' C Q 17 beta 1881 1887 1884 1906 C1' G Q 18 beta 1901 1907 1904 1929 C1' U Q 19 beta 1924 1930 1927 1949 C1' U Q 20 beta 1944 1950 1947 1969 C1' C Q 21 beta 1964 1970 1967 1989 C1' G Q 22 beta 1984 1990 1987 2012 C1' A Q 23 beta 2007 2013 2010 2034 C1' C Q 24 beta 2029 2035 2032 2054 C1' C Q 25 beta 2049 2055 2052 2074 C1' A Q 26 beta 2069 2075 2072 2096 C1' G Q 27 beta 2091 2097 2094 2119 C1' C Q 28 beta 2114 2120 2117 2139 C1' G Q 29 beta 2134 2140 2137 2162 C1' A Q 30 beta 2157 2163 2160 2184 C1' A Q 31 beta 2179 2185 2182 2206 C1' A Q 32 beta 2201 2207 2204 2228 C1' G Q 33 beta 2223 2229 2226 2251 C1' C Q 34 beta 2246 2252 2249 2271 C1' U Q 35 beta 2266 2272 2269 2291 C1' C Q 36 beta 2286 2292 2289 2311 C1' U Q 37 beta 2306 2312 2309 2331 C1' U Q 38 beta 2326 2332 2329 2351 C1' A Q 39 beta 2346 2352 2349 2373 C1' G Q 40 beta 2368 2374 2371 2396 C1' A Q 41 beta 2391 2397 2394 2418 C1' C Q 42 beta 2413 2419 2416 2438 C1' A Q 43 beta 2433 2439 2436 2460 C1' G Q 44 beta 2455 2461 2458 2483 C1' G Q 45 beta 2478 2484 2481 2506 C1' A Q 46 beta 2501 2507 2504 2528 C1' G Q 47 beta 2523 2529 2526 2551 C1' G Q 48 beta 2546 2552 2549 2574 C1' U Q 49 beta 2569 2575 2572 2594 C1' U Q 50 beta 2589 2595 2592 2614 C1' A Q 51 beta 2609 2615 2612 2636 C1' G Q 52 beta 2631 2637 2634 2659 C1' G Q 53 beta 2654 2660 2657 2682 C1' U Q 54 beta 2677 2683 2680 2702 C1' G Q 55 beta 2697 2703 2700 2725 C1' C Q 56 beta 2720 2726 2723 2745 C1' U Q 57 beta 2740 2746 2743 2765 C1' C Q 58 beta 2760 2766 2763 2785 C1' C Q 59 beta 2780 2786 2783 2805 C1' G Q 60 beta 2800 2806 2803 2828 C1' A Q 61 beta 2823 2829 2826 2850 C1' A Q 62 beta 2845 2851 2848 2872 C1' A Q 63 beta 2867 2873 2870 2894 C1' G Q 64 beta 2889 2895 2892 2917 C1' G Q 65 beta 2912 2918 2915 2940 C1' A Q 66 beta 2935 2941 2938 2962 C1' G Q 67 beta 2957 2963 2960 2985 C1' C Q 68 beta 2980 2986 2983 3005 C1' A Q 69 beta 3000 3006 3003 3027 C1' C Q 70 beta 3022 3028 3025 3047 C1' U Q 71 beta 3042 3048 3045 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' G P 1 OK 12 8 11 33 C2' G P 2 OK 35 31 34 56 C2' A P 3 OK 58 54 57 78 C2' C P 4 OK 80 76 79 98 C2' C P 5 OK 100 96 99 118 C2' U P 6 OK 120 116 119 138 C2' C P 7 OK 140 136 139 158 C2' G P 8 OK 160 156 159 181 C2' G P 9 OK 183 179 182 204 C2' C P 10 OK 206 202 205 224 C2' G P 11 OK 226 222 225 247 C2' A P 12 OK 249 245 248 269 C2' A P 13 OK 271 267 270 291 C2' A P 14 OK 293 289 292 313 C2' G P 15 OK 315 311 314 336 C2' C P 16 OK 338 334 337 356 C2' C P 17 OK 358 354 357 376 C2' G P 18 OK 378 374 377 399 C2' U P 19 OK 401 397 400 419 C2' U P 20 OK 421 417 420 439 C2' C P 21 OK 441 437 440 459 C2' G P 22 OK 461 457 460 482 C2' A P 23 OK 484 480 483 504 C2' C P 24 OK 506 502 505 524 C2' C P 25 OK 526 522 525 544 C2' A P 26 OK 546 542 545 566 C2' G P 27 OK 568 564 567 589 C2' C P 28 OK 591 587 590 609 C2' G P 29 OK 611 607 610 632 C2' A P 30 OK 634 630 633 654 C2' A P 31 OK 656 652 655 676 C2' A P 32 OK 678 674 677 698 C2' G P 33 OK 700 696 699 721 C2' C P 34 OK 723 719 722 741 C2' U P 35 OK 743 739 742 761 C2' C P 36 OK 763 759 762 781 C2' U P 37 OK 783 779 782 801 C2' U P 38 OK 803 799 802 821 C2' A P 39 OK 823 819 822 843 C2' G P 40 OK 845 841 844 866 C2' A P 41 OK 868 864 867 888 C2' C P 42 OK 890 886 889 908 C2' A P 43 OK 910 906 909 930 C2' G P 44 OK 932 928 931 953 C2' G P 45 OK 955 951 954 976 C2' A P 46 OK 978 974 977 998 C2' G P 47 OK 1000 996 999 1021 C2' G P 48 OK 1023 1019 1022 1044 C2' U P 49 OK 1046 1042 1045 1064 C2' U P 50 OK 1066 1062 1065 1084 C2' A P 51 OK 1086 1082 1085 1106 C2' G P 52 OK 1108 1104 1107 1129 C2' G P 53 OK 1131 1127 1130 1152 C2' U P 54 OK 1154 1150 1153 1172 C2' G P 55 OK 1174 1170 1173 1195 C2' C P 56 OK 1197 1193 1196 1215 C2' U P 57 OK 1217 1213 1216 1235 C2' C P 58 OK 1237 1233 1236 1255 C2' C P 59 OK 1257 1253 1256 1275 C2' G P 60 OK 1277 1273 1276 1298 C2' A P 61 OK 1300 1296 1299 1320 C2' A P 62 OK 1322 1318 1321 1342 C2' A P 63 OK 1344 1340 1343 1364 C2' G P 64 OK 1366 1362 1365 1387 C2' G P 65 OK 1389 1385 1388 1410 C2' A P 66 OK 1412 1408 1411 1432 C2' G P 67 OK 1434 1430 1433 1455 C2' C P 68 OK 1457 1453 1456 1475 C2' A P 69 OK 1477 1473 1476 1497 C2' C P 70 OK 1499 1495 1498 1517 C2' U P 71 OK 1519 1515 1518 1538 C2' G Q 1 OK 1540 1536 1539 1561 C2' G Q 2 OK 1563 1559 1562 1584 C2' A Q 3 OK 1586 1582 1585 1606 C2' C Q 4 OK 1608 1604 1607 1626 C2' C Q 5 OK 1628 1624 1627 1646 C2' U Q 6 OK 1648 1644 1647 1666 C2' C Q 7 OK 1668 1664 1667 1686 C2' G Q 8 OK 1688 1684 1687 1709 C2' G Q 9 OK 1711 1707 1710 1732 C2' C Q 10 OK 1734 1730 1733 1752 C2' G Q 11 OK 1754 1750 1753 1775 C2' A Q 12 OK 1777 1773 1776 1797 C2' A Q 13 OK 1799 1795 1798 1819 C2' A Q 14 OK 1821 1817 1820 1841 C2' G Q 15 OK 1843 1839 1842 1864 C2' C Q 16 OK 1866 1862 1865 1884 C2' C Q 17 OK 1886 1882 1885 1904 C2' G Q 18 OK 1906 1902 1905 1927 C2' U Q 19 OK 1929 1925 1928 1947 C2' U Q 20 OK 1949 1945 1948 1967 C2' C Q 21 OK 1969 1965 1968 1987 C2' G Q 22 OK 1989 1985 1988 2010 C2' A Q 23 OK 2012 2008 2011 2032 C2' C Q 24 OK 2034 2030 2033 2052 C2' C Q 25 OK 2054 2050 2053 2072 C2' A Q 26 OK 2074 2070 2073 2094 C2' G Q 27 OK 2096 2092 2095 2117 C2' C Q 28 OK 2119 2115 2118 2137 C2' G Q 29 OK 2139 2135 2138 2160 C2' A Q 30 OK 2162 2158 2161 2182 C2' A Q 31 OK 2184 2180 2183 2204 C2' A Q 32 OK 2206 2202 2205 2226 C2' G Q 33 OK 2228 2224 2227 2249 C2' C Q 34 OK 2251 2247 2250 2269 C2' U Q 35 OK 2271 2267 2270 2289 C2' C Q 36 OK 2291 2287 2290 2309 C2' U Q 37 OK 2311 2307 2310 2329 C2' U Q 38 OK 2331 2327 2330 2349 C2' A Q 39 OK 2351 2347 2350 2371 C2' G Q 40 OK 2373 2369 2372 2394 C2' A Q 41 OK 2396 2392 2395 2416 C2' C Q 42 OK 2418 2414 2417 2436 C2' A Q 43 OK 2438 2434 2437 2458 C2' G Q 44 OK 2460 2456 2459 2481 C2' G Q 45 OK 2483 2479 2482 2504 C2' A Q 46 OK 2506 2502 2505 2526 C2' G Q 47 OK 2528 2524 2527 2549 C2' G Q 48 OK 2551 2547 2550 2572 C2' U Q 49 OK 2574 2570 2573 2592 C2' U Q 50 OK 2594 2590 2593 2612 C2' A Q 51 OK 2614 2610 2613 2634 C2' G Q 52 OK 2636 2632 2635 2657 C2' G Q 53 OK 2659 2655 2658 2680 C2' U Q 54 OK 2682 2678 2681 2700 C2' G Q 55 OK 2702 2698 2701 2723 C2' C Q 56 OK 2725 2721 2724 2743 C2' U Q 57 OK 2745 2741 2744 2763 C2' C Q 58 OK 2765 2761 2764 2783 C2' C Q 59 OK 2785 2781 2784 2803 C2' G Q 60 OK 2805 2801 2804 2826 C2' A Q 61 OK 2828 2824 2827 2848 C2' A Q 62 OK 2850 2846 2849 2870 C2' A Q 63 OK 2872 2868 2871 2892 C2' G Q 64 OK 2894 2890 2893 2915 C2' G Q 65 OK 2917 2913 2916 2938 C2' A Q 66 OK 2940 2936 2939 2960 C2' G Q 67 OK 2962 2958 2961 2983 C2' C Q 68 OK 2985 2981 2984 3003 C2' A Q 69 OK 3005 3001 3004 3025 C2' C Q 70 OK 3027 3023 3026 3045 C2' U Q 71 OK 3047 3043 3046 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' G P 1 OK 6 9 10 31 C3' G P 2 OK 29 32 33 54 C3' A P 3 OK 52 55 56 76 C3' C P 4 OK 74 77 78 96 C3' C P 5 OK 94 97 98 116 C3' U P 6 OK 114 117 118 136 C3' C P 7 OK 134 137 138 156 C3' G P 8 OK 154 157 158 179 C3' G P 9 OK 177 180 181 202 C3' C P 10 OK 200 203 204 222 C3' G P 11 OK 220 223 224 245 C3' A P 12 OK 243 246 247 267 C3' A P 13 OK 265 268 269 289 C3' A P 14 OK 287 290 291 311 C3' G P 15 OK 309 312 313 334 C3' C P 16 OK 332 335 336 354 C3' C P 17 OK 352 355 356 374 C3' G P 18 OK 372 375 376 397 C3' U P 19 OK 395 398 399 417 C3' U P 20 OK 415 418 419 437 C3' C P 21 OK 435 438 439 457 C3' G P 22 OK 455 458 459 480 C3' A P 23 OK 478 481 482 502 C3' C P 24 OK 500 503 504 522 C3' C P 25 OK 520 523 524 542 C3' A P 26 OK 540 543 544 564 C3' G P 27 OK 562 565 566 587 C3' C P 28 OK 585 588 589 607 C3' G P 29 OK 605 608 609 630 C3' A P 30 OK 628 631 632 652 C3' A P 31 OK 650 653 654 674 C3' A P 32 OK 672 675 676 696 C3' G P 33 OK 694 697 698 719 C3' C P 34 OK 717 720 721 739 C3' U P 35 OK 737 740 741 759 C3' C P 36 OK 757 760 761 779 C3' U P 37 OK 777 780 781 799 C3' U P 38 OK 797 800 801 819 C3' A P 39 OK 817 820 821 841 C3' G P 40 OK 839 842 843 864 C3' A P 41 OK 862 865 866 886 C3' C P 42 OK 884 887 888 906 C3' A P 43 OK 904 907 908 928 C3' G P 44 OK 926 929 930 951 C3' G P 45 OK 949 952 953 974 C3' A P 46 OK 972 975 976 996 C3' G P 47 OK 994 997 998 1019 C3' G P 48 OK 1017 1020 1021 1042 C3' U P 49 OK 1040 1043 1044 1062 C3' U P 50 OK 1060 1063 1064 1082 C3' A P 51 OK 1080 1083 1084 1104 C3' G P 52 OK 1102 1105 1106 1127 C3' G P 53 OK 1125 1128 1129 1150 C3' U P 54 OK 1148 1151 1152 1170 C3' G P 55 OK 1168 1171 1172 1193 C3' C P 56 OK 1191 1194 1195 1213 C3' U P 57 OK 1211 1214 1215 1233 C3' C P 58 OK 1231 1234 1235 1253 C3' C P 59 OK 1251 1254 1255 1273 C3' G P 60 OK 1271 1274 1275 1296 C3' A P 61 OK 1294 1297 1298 1318 C3' A P 62 OK 1316 1319 1320 1340 C3' A P 63 OK 1338 1341 1342 1362 C3' G P 64 OK 1360 1363 1364 1385 C3' G P 65 OK 1383 1386 1387 1408 C3' A P 66 OK 1406 1409 1410 1430 C3' G P 67 OK 1428 1431 1432 1453 C3' C P 68 OK 1451 1454 1455 1473 C3' A P 69 OK 1471 1474 1475 1495 C3' C P 70 OK 1493 1496 1497 1515 C3' U P 71 OK 1513 1516 1517 1536 C3' G Q 1 OK 1534 1537 1538 1559 C3' G Q 2 OK 1557 1560 1561 1582 C3' A Q 3 OK 1580 1583 1584 1604 C3' C Q 4 OK 1602 1605 1606 1624 C3' C Q 5 OK 1622 1625 1626 1644 C3' U Q 6 OK 1642 1645 1646 1664 C3' C Q 7 OK 1662 1665 1666 1684 C3' G Q 8 OK 1682 1685 1686 1707 C3' G Q 9 OK 1705 1708 1709 1730 C3' C Q 10 OK 1728 1731 1732 1750 C3' G Q 11 OK 1748 1751 1752 1773 C3' A Q 12 OK 1771 1774 1775 1795 C3' A Q 13 OK 1793 1796 1797 1817 C3' A Q 14 OK 1815 1818 1819 1839 C3' G Q 15 OK 1837 1840 1841 1862 C3' C Q 16 OK 1860 1863 1864 1882 C3' C Q 17 OK 1880 1883 1884 1902 C3' G Q 18 OK 1900 1903 1904 1925 C3' U Q 19 OK 1923 1926 1927 1945 C3' U Q 20 OK 1943 1946 1947 1965 C3' C Q 21 OK 1963 1966 1967 1985 C3' G Q 22 OK 1983 1986 1987 2008 C3' A Q 23 OK 2006 2009 2010 2030 C3' C Q 24 OK 2028 2031 2032 2050 C3' C Q 25 OK 2048 2051 2052 2070 C3' A Q 26 OK 2068 2071 2072 2092 C3' G Q 27 OK 2090 2093 2094 2115 C3' C Q 28 OK 2113 2116 2117 2135 C3' G Q 29 OK 2133 2136 2137 2158 C3' A Q 30 OK 2156 2159 2160 2180 C3' A Q 31 OK 2178 2181 2182 2202 C3' A Q 32 OK 2200 2203 2204 2224 C3' G Q 33 OK 2222 2225 2226 2247 C3' C Q 34 OK 2245 2248 2249 2267 C3' U Q 35 OK 2265 2268 2269 2287 C3' C Q 36 OK 2285 2288 2289 2307 C3' U Q 37 OK 2305 2308 2309 2327 C3' U Q 38 OK 2325 2328 2329 2347 C3' A Q 39 OK 2345 2348 2349 2369 C3' G Q 40 OK 2367 2370 2371 2392 C3' A Q 41 OK 2390 2393 2394 2414 C3' C Q 42 OK 2412 2415 2416 2434 C3' A Q 43 OK 2432 2435 2436 2456 C3' G Q 44 OK 2454 2457 2458 2479 C3' G Q 45 OK 2477 2480 2481 2502 C3' A Q 46 OK 2500 2503 2504 2524 C3' G Q 47 OK 2522 2525 2526 2547 C3' G Q 48 OK 2545 2548 2549 2570 C3' U Q 49 OK 2568 2571 2572 2590 C3' U Q 50 OK 2588 2591 2592 2610 C3' A Q 51 OK 2608 2611 2612 2632 C3' G Q 52 OK 2630 2633 2634 2655 C3' G Q 53 OK 2653 2656 2657 2678 C3' U Q 54 OK 2676 2679 2680 2698 C3' G Q 55 OK 2696 2699 2700 2721 C3' C Q 56 OK 2719 2722 2723 2741 C3' U Q 57 OK 2739 2742 2743 2761 C3' C Q 58 OK 2759 2762 2763 2781 C3' C Q 59 OK 2779 2782 2783 2801 C3' G Q 60 OK 2799 2802 2803 2824 C3' A Q 61 OK 2822 2825 2826 2846 C3' A Q 62 OK 2844 2847 2848 2868 C3' A Q 63 OK 2866 2869 2870 2890 C3' G Q 64 OK 2888 2891 2892 2913 C3' G Q 65 OK 2911 2914 2915 2936 C3' A Q 66 OK 2934 2937 2938 2958 C3' G Q 67 OK 2956 2959 2960 2981 C3' C Q 68 OK 2979 2982 2983 3001 C3' A Q 69 OK 2999 3002 3003 3023 C3' C Q 70 OK 3021 3024 3025 3043 C3' U Q 71 OK 3041 3044 3045 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' G P 1 OK 8 5 7 29 C4' G P 2 OK 31 28 30 52 C4' A P 3 OK 54 51 53 74 C4' C P 4 OK 76 73 75 94 C4' C P 5 OK 96 93 95 114 C4' U P 6 OK 116 113 115 134 C4' C P 7 OK 136 133 135 154 C4' G P 8 OK 156 153 155 177 C4' G P 9 OK 179 176 178 200 C4' C P 10 OK 202 199 201 220 C4' G P 11 OK 222 219 221 243 C4' A P 12 OK 245 242 244 265 C4' A P 13 OK 267 264 266 287 C4' A P 14 OK 289 286 288 309 C4' G P 15 OK 311 308 310 332 C4' C P 16 OK 334 331 333 352 C4' C P 17 OK 354 351 353 372 C4' G P 18 OK 374 371 373 395 C4' U P 19 OK 397 394 396 415 C4' U P 20 OK 417 414 416 435 C4' C P 21 OK 437 434 436 455 C4' G P 22 OK 457 454 456 478 C4' A P 23 OK 480 477 479 500 C4' C P 24 OK 502 499 501 520 C4' C P 25 OK 522 519 521 540 C4' A P 26 OK 542 539 541 562 C4' G P 27 OK 564 561 563 585 C4' C P 28 OK 587 584 586 605 C4' G P 29 OK 607 604 606 628 C4' A P 30 OK 630 627 629 650 C4' A P 31 OK 652 649 651 672 C4' A P 32 OK 674 671 673 694 C4' G P 33 OK 696 693 695 717 C4' C P 34 OK 719 716 718 737 C4' U P 35 OK 739 736 738 757 C4' C P 36 OK 759 756 758 777 C4' U P 37 OK 779 776 778 797 C4' U P 38 OK 799 796 798 817 C4' A P 39 OK 819 816 818 839 C4' G P 40 OK 841 838 840 862 C4' A P 41 OK 864 861 863 884 C4' C P 42 OK 886 883 885 904 C4' A P 43 OK 906 903 905 926 C4' G P 44 OK 928 925 927 949 C4' G P 45 OK 951 948 950 972 C4' A P 46 OK 974 971 973 994 C4' G P 47 OK 996 993 995 1017 C4' G P 48 OK 1019 1016 1018 1040 C4' U P 49 OK 1042 1039 1041 1060 C4' U P 50 OK 1062 1059 1061 1080 C4' A P 51 OK 1082 1079 1081 1102 C4' G P 52 OK 1104 1101 1103 1125 C4' G P 53 OK 1127 1124 1126 1148 C4' U P 54 OK 1150 1147 1149 1168 C4' G P 55 OK 1170 1167 1169 1191 C4' C P 56 OK 1193 1190 1192 1211 C4' U P 57 OK 1213 1210 1212 1231 C4' C P 58 OK 1233 1230 1232 1251 C4' C P 59 OK 1253 1250 1252 1271 C4' G P 60 OK 1273 1270 1272 1294 C4' A P 61 OK 1296 1293 1295 1316 C4' A P 62 OK 1318 1315 1317 1338 C4' A P 63 OK 1340 1337 1339 1360 C4' G P 64 OK 1362 1359 1361 1383 C4' G P 65 OK 1385 1382 1384 1406 C4' A P 66 OK 1408 1405 1407 1428 C4' G P 67 OK 1430 1427 1429 1451 C4' C P 68 OK 1453 1450 1452 1471 C4' A P 69 OK 1473 1470 1472 1493 C4' C P 70 OK 1495 1492 1494 1513 C4' U P 71 OK 1515 1512 1514 1534 C4' G Q 1 OK 1536 1533 1535 1557 C4' G Q 2 OK 1559 1556 1558 1580 C4' A Q 3 OK 1582 1579 1581 1602 C4' C Q 4 OK 1604 1601 1603 1622 C4' C Q 5 OK 1624 1621 1623 1642 C4' U Q 6 OK 1644 1641 1643 1662 C4' C Q 7 OK 1664 1661 1663 1682 C4' G Q 8 OK 1684 1681 1683 1705 C4' G Q 9 OK 1707 1704 1706 1728 C4' C Q 10 OK 1730 1727 1729 1748 C4' G Q 11 OK 1750 1747 1749 1771 C4' A Q 12 OK 1773 1770 1772 1793 C4' A Q 13 OK 1795 1792 1794 1815 C4' A Q 14 OK 1817 1814 1816 1837 C4' G Q 15 OK 1839 1836 1838 1860 C4' C Q 16 OK 1862 1859 1861 1880 C4' C Q 17 OK 1882 1879 1881 1900 C4' G Q 18 OK 1902 1899 1901 1923 C4' U Q 19 OK 1925 1922 1924 1943 C4' U Q 20 OK 1945 1942 1944 1963 C4' C Q 21 OK 1965 1962 1964 1983 C4' G Q 22 OK 1985 1982 1984 2006 C4' A Q 23 OK 2008 2005 2007 2028 C4' C Q 24 OK 2030 2027 2029 2048 C4' C Q 25 OK 2050 2047 2049 2068 C4' A Q 26 OK 2070 2067 2069 2090 C4' G Q 27 OK 2092 2089 2091 2113 C4' C Q 28 OK 2115 2112 2114 2133 C4' G Q 29 OK 2135 2132 2134 2156 C4' A Q 30 OK 2158 2155 2157 2178 C4' A Q 31 OK 2180 2177 2179 2200 C4' A Q 32 OK 2202 2199 2201 2222 C4' G Q 33 OK 2224 2221 2223 2245 C4' C Q 34 OK 2247 2244 2246 2265 C4' U Q 35 OK 2267 2264 2266 2285 C4' C Q 36 OK 2287 2284 2286 2305 C4' U Q 37 OK 2307 2304 2306 2325 C4' U Q 38 OK 2327 2324 2326 2345 C4' A Q 39 OK 2347 2344 2346 2367 C4' G Q 40 OK 2369 2366 2368 2390 C4' A Q 41 OK 2392 2389 2391 2412 C4' C Q 42 OK 2414 2411 2413 2432 C4' A Q 43 OK 2434 2431 2433 2454 C4' G Q 44 OK 2456 2453 2455 2477 C4' G Q 45 OK 2479 2476 2478 2500 C4' A Q 46 OK 2502 2499 2501 2522 C4' G Q 47 OK 2524 2521 2523 2545 C4' G Q 48 OK 2547 2544 2546 2568 C4' U Q 49 OK 2570 2567 2569 2588 C4' U Q 50 OK 2590 2587 2589 2608 C4' A Q 51 OK 2610 2607 2609 2630 C4' G Q 52 OK 2632 2629 2631 2653 C4' G Q 53 OK 2655 2652 2654 2676 C4' U Q 54 OK 2678 2675 2677 2696 C4' G Q 55 OK 2698 2695 2697 2719 C4' C Q 56 OK 2721 2718 2720 2739 C4' U Q 57 OK 2741 2738 2740 2759 C4' C Q 58 OK 2761 2758 2760 2779 C4' C Q 59 OK 2781 2778 2780 2799 C4' G Q 60 OK 2801 2798 2800 2822 C4' A Q 61 OK 2824 2821 2823 2844 C4' A Q 62 OK 2846 2843 2845 2866 C4' A Q 63 OK 2868 2865 2867 2888 C4' G Q 64 OK 2890 2887 2889 2911 C4' G Q 65 OK 2913 2910 2912 2934 C4' A Q 66 OK 2936 2933 2935 2956 C4' G Q 67 OK 2958 2955 2957 2979 C4' C Q 68 OK 2981 2978 2980 2999 C4' A Q 69 OK 3001 2998 3000 3021 C4' C Q 70 OK 3023 3020 3022 3041 C4' U Q 71 OK 3043 3040 3042 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' G P 1 4 6 28 C5' G P 2 27 29 51 C5' A P 3 50 52 73 C5' C P 4 72 74 93 C5' C P 5 92 94 113 C5' U P 6 112 114 133 C5' C P 7 132 134 153 C5' G P 8 152 154 176 C5' G P 9 175 177 199 C5' C P 10 198 200 219 C5' G P 11 218 220 242 C5' A P 12 241 243 264 C5' A P 13 263 265 286 C5' A P 14 285 287 308 C5' G P 15 307 309 331 C5' C P 16 330 332 351 C5' C P 17 350 352 371 C5' G P 18 370 372 394 C5' U P 19 393 395 414 C5' U P 20 413 415 434 C5' C P 21 433 435 454 C5' G P 22 453 455 477 C5' A P 23 476 478 499 C5' C P 24 498 500 519 C5' C P 25 518 520 539 C5' A P 26 538 540 561 C5' G P 27 560 562 584 C5' C P 28 583 585 604 C5' G P 29 603 605 627 C5' A P 30 626 628 649 C5' A P 31 648 650 671 C5' A P 32 670 672 693 C5' G P 33 692 694 716 C5' C P 34 715 717 736 C5' U P 35 735 737 756 C5' C P 36 755 757 776 C5' U P 37 775 777 796 C5' U P 38 795 797 816 C5' A P 39 815 817 838 C5' G P 40 837 839 861 C5' A P 41 860 862 883 C5' C P 42 882 884 903 C5' A P 43 902 904 925 C5' G P 44 924 926 948 C5' G P 45 947 949 971 C5' A P 46 970 972 993 C5' G P 47 992 994 1016 C5' G P 48 1015 1017 1039 C5' U P 49 1038 1040 1059 C5' U P 50 1058 1060 1079 C5' A P 51 1078 1080 1101 C5' G P 52 1100 1102 1124 C5' G P 53 1123 1125 1147 C5' U P 54 1146 1148 1167 C5' G P 55 1166 1168 1190 C5' C P 56 1189 1191 1210 C5' U P 57 1209 1211 1230 C5' C P 58 1229 1231 1250 C5' C P 59 1249 1251 1270 C5' G P 60 1269 1271 1293 C5' A P 61 1292 1294 1315 C5' A P 62 1314 1316 1337 C5' A P 63 1336 1338 1359 C5' G P 64 1358 1360 1382 C5' G P 65 1381 1383 1405 C5' A P 66 1404 1406 1427 C5' G P 67 1426 1428 1450 C5' C P 68 1449 1451 1470 C5' A P 69 1469 1471 1492 C5' C P 70 1491 1493 1512 C5' U P 71 1511 1513 1533 C5' G Q 1 1532 1534 1556 C5' G Q 2 1555 1557 1579 C5' A Q 3 1578 1580 1601 C5' C Q 4 1600 1602 1621 C5' C Q 5 1620 1622 1641 C5' U Q 6 1640 1642 1661 C5' C Q 7 1660 1662 1681 C5' G Q 8 1680 1682 1704 C5' G Q 9 1703 1705 1727 C5' C Q 10 1726 1728 1747 C5' G Q 11 1746 1748 1770 C5' A Q 12 1769 1771 1792 C5' A Q 13 1791 1793 1814 C5' A Q 14 1813 1815 1836 C5' G Q 15 1835 1837 1859 C5' C Q 16 1858 1860 1879 C5' C Q 17 1878 1880 1899 C5' G Q 18 1898 1900 1922 C5' U Q 19 1921 1923 1942 C5' U Q 20 1941 1943 1962 C5' C Q 21 1961 1963 1982 C5' G Q 22 1981 1983 2005 C5' A Q 23 2004 2006 2027 C5' C Q 24 2026 2028 2047 C5' C Q 25 2046 2048 2067 C5' A Q 26 2066 2068 2089 C5' G Q 27 2088 2090 2112 C5' C Q 28 2111 2113 2132 C5' G Q 29 2131 2133 2155 C5' A Q 30 2154 2156 2177 C5' A Q 31 2176 2178 2199 C5' A Q 32 2198 2200 2221 C5' G Q 33 2220 2222 2244 C5' C Q 34 2243 2245 2264 C5' U Q 35 2263 2265 2284 C5' C Q 36 2283 2285 2304 C5' U Q 37 2303 2305 2324 C5' U Q 38 2323 2325 2344 C5' A Q 39 2343 2345 2366 C5' G Q 40 2365 2367 2389 C5' A Q 41 2388 2390 2411 C5' C Q 42 2410 2412 2431 C5' A Q 43 2430 2432 2453 C5' G Q 44 2452 2454 2476 C5' G Q 45 2475 2477 2499 C5' A Q 46 2498 2500 2521 C5' G Q 47 2520 2522 2544 C5' G Q 48 2543 2545 2567 C5' U Q 49 2566 2568 2587 C5' U Q 50 2586 2588 2607 C5' A Q 51 2606 2608 2629 C5' G Q 52 2628 2630 2652 C5' G Q 53 2651 2653 2675 C5' U Q 54 2674 2676 2695 C5' G Q 55 2694 2696 2718 C5' C Q 56 2717 2719 2738 C5' U Q 57 2737 2739 2758 C5' C Q 58 2757 2759 2778 C5' C Q 59 2777 2779 2798 C5' G Q 60 2797 2799 2821 C5' A Q 61 2820 2822 2843 C5' A Q 62 2842 2844 2865 C5' A Q 63 2864 2866 2887 C5' G Q 64 2886 2888 2910 C5' G Q 65 2909 2911 2933 C5' A Q 66 2932 2934 2955 C5' G Q 67 2954 2956 2978 C5' C Q 68 2977 2979 2998 C5' A Q 69 2997 2999 3020 C5' C Q 70 3019 3021 3040 C5' U Q 71 3039 3041 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P G P 1 distorted distorted 1516 2 3 4 24 P G P 2 distorted distorted 9 25 26 27 47 P A P 3 distorted distorted 32 48 49 50 69 P C P 4 distorted distorted 55 70 71 72 89 P C P 5 distorted distorted 77 90 91 92 109 P U P 6 distorted distorted 97 110 111 112 129 P C P 7 distorted distorted 117 130 131 132 149 P G P 8 distorted distorted 137 150 151 152 172 P G P 9 distorted distorted 157 173 174 175 195 P C P 10 distorted distorted 180 196 197 198 215 P G P 11 distorted distorted 203 216 217 218 238 P A P 12 distorted distorted 223 239 240 241 260 P A P 13 distorted distorted 246 261 262 263 282 P A P 14 distorted distorted 268 283 284 285 304 P G P 15 distorted distorted 290 305 306 307 327 P C P 16 distorted distorted 312 328 329 330 347 P C P 17 distorted distorted 335 348 349 350 367 P G P 18 distorted distorted 355 368 369 370 390 P U P 19 distorted distorted 375 391 392 393 410 P U P 20 distorted distorted 398 411 412 413 430 P C P 21 distorted distorted 418 431 432 433 450 P G P 22 distorted distorted 438 451 452 453 473 P A P 23 distorted distorted 458 474 475 476 495 P C P 24 distorted distorted 481 496 497 498 515 P C P 25 distorted distorted 503 516 517 518 535 P A P 26 distorted distorted 523 536 537 538 557 P G P 27 distorted distorted 543 558 559 560 580 P C P 28 distorted distorted 565 581 582 583 600 P G P 29 distorted distorted 588 601 602 603 623 P A P 30 distorted distorted 608 624 625 626 645 P A P 31 distorted distorted 631 646 647 648 667 P A P 32 distorted distorted 653 668 669 670 689 P G P 33 distorted distorted 675 690 691 692 712 P C P 34 distorted distorted 697 713 714 715 732 P U P 35 distorted distorted 720 733 734 735 752 P C P 36 distorted distorted 740 753 754 755 772 P U P 37 distorted distorted 760 773 774 775 792 P U P 38 distorted distorted 780 793 794 795 812 P A P 39 distorted distorted 800 813 814 815 834 P G P 40 distorted distorted 820 835 836 837 857 P A P 41 distorted distorted 842 858 859 860 879 P C P 42 distorted distorted 865 880 881 882 899 P A P 43 distorted distorted 887 900 901 902 921 P G P 44 distorted distorted 907 922 923 924 944 P G P 45 distorted distorted 929 945 946 947 967 P A P 46 distorted distorted 952 968 969 970 989 P G P 47 distorted distorted 975 990 991 992 1012 P G P 48 distorted distorted 997 1013 1014 1015 1035 P U P 49 distorted distorted 1020 1036 1037 1038 1055 P U P 50 distorted distorted 1043 1056 1057 1058 1075 P A P 51 distorted distorted 1063 1076 1077 1078 1097 P G P 52 distorted distorted 1083 1098 1099 1100 1120 P G P 53 distorted distorted 1105 1121 1122 1123 1143 P U P 54 distorted distorted 1128 1144 1145 1146 1163 P G P 55 distorted distorted 1151 1164 1165 1166 1186 P C P 56 distorted distorted 1171 1187 1188 1189 1206 P U P 57 distorted distorted 1194 1207 1208 1209 1226 P C P 58 distorted distorted 1214 1227 1228 1229 1246 P C P 59 distorted distorted 1234 1247 1248 1249 1266 P G P 60 distorted distorted 1254 1267 1268 1269 1289 P A P 61 distorted distorted 1274 1290 1291 1292 1311 P A P 62 distorted distorted 1297 1312 1313 1314 1333 P A P 63 distorted distorted 1319 1334 1335 1336 1355 P G P 64 distorted distorted 1341 1356 1357 1358 1378 P G P 65 distorted distorted 1363 1379 1380 1381 1401 P A P 66 distorted distorted 1386 1402 1403 1404 1423 P G P 67 distorted distorted 1409 1424 1425 1426 1446 P C P 68 distorted distorted 1431 1447 1448 1449 1466 P A P 69 distorted distorted 1454 1467 1468 1469 1488 P C P 70 distorted distorted 1474 1489 1490 1491 1508 P U P 71 distorted distorted 1496 1509 1510 1511 1529 P G Q 1 distorted distorted 3044 1530 1531 1532 1552 P G Q 2 distorted distorted 1537 1553 1554 1555 1575 P A Q 3 distorted distorted 1560 1576 1577 1578 1597 P C Q 4 distorted distorted 1583 1598 1599 1600 1617 P C Q 5 distorted distorted 1605 1618 1619 1620 1637 P U Q 6 distorted distorted 1625 1638 1639 1640 1657 P C Q 7 distorted distorted 1645 1658 1659 1660 1677 P G Q 8 distorted distorted 1665 1678 1679 1680 1700 P G Q 9 distorted distorted 1685 1701 1702 1703 1723 P C Q 10 distorted distorted 1708 1724 1725 1726 1743 P G Q 11 distorted distorted 1731 1744 1745 1746 1766 P A Q 12 distorted distorted 1751 1767 1768 1769 1788 P A Q 13 distorted distorted 1774 1789 1790 1791 1810 P A Q 14 distorted distorted 1796 1811 1812 1813 1832 P G Q 15 distorted distorted 1818 1833 1834 1835 1855 P C Q 16 distorted distorted 1840 1856 1857 1858 1875 P C Q 17 distorted distorted 1863 1876 1877 1878 1895 P G Q 18 distorted distorted 1883 1896 1897 1898 1918 P U Q 19 distorted distorted 1903 1919 1920 1921 1938 P U Q 20 distorted distorted 1926 1939 1940 1941 1958 P C Q 21 distorted distorted 1946 1959 1960 1961 1978 P G Q 22 distorted distorted 1966 1979 1980 1981 2001 P A Q 23 distorted distorted 1986 2002 2003 2004 2023 P C Q 24 distorted distorted 2009 2024 2025 2026 2043 P C Q 25 distorted distorted 2031 2044 2045 2046 2063 P A Q 26 distorted distorted 2051 2064 2065 2066 2085 P G Q 27 distorted distorted 2071 2086 2087 2088 2108 P C Q 28 distorted distorted 2093 2109 2110 2111 2128 P G Q 29 distorted distorted 2116 2129 2130 2131 2151 P A Q 30 distorted distorted 2136 2152 2153 2154 2173 P A Q 31 distorted distorted 2159 2174 2175 2176 2195 P A Q 32 distorted distorted 2181 2196 2197 2198 2217 P G Q 33 distorted distorted 2203 2218 2219 2220 2240 P C Q 34 distorted distorted 2225 2241 2242 2243 2260 P U Q 35 distorted distorted 2248 2261 2262 2263 2280 P C Q 36 distorted distorted 2268 2281 2282 2283 2300 P U Q 37 distorted distorted 2288 2301 2302 2303 2320 P U Q 38 distorted distorted 2308 2321 2322 2323 2340 P A Q 39 distorted distorted 2328 2341 2342 2343 2362 P G Q 40 distorted distorted 2348 2363 2364 2365 2385 P A Q 41 distorted distorted 2370 2386 2387 2388 2407 P C Q 42 distorted distorted 2393 2408 2409 2410 2427 P A Q 43 distorted distorted 2415 2428 2429 2430 2449 P G Q 44 distorted distorted 2435 2450 2451 2452 2472 P G Q 45 distorted distorted 2457 2473 2474 2475 2495 P A Q 46 distorted distorted 2480 2496 2497 2498 2517 P G Q 47 distorted distorted 2503 2518 2519 2520 2540 P G Q 48 distorted distorted 2525 2541 2542 2543 2563 P U Q 49 distorted distorted 2548 2564 2565 2566 2583 P U Q 50 distorted distorted 2571 2584 2585 2586 2603 P A Q 51 distorted distorted 2591 2604 2605 2606 2625 P G Q 52 distorted distorted 2611 2626 2627 2628 2648 P G Q 53 distorted distorted 2633 2649 2650 2651 2671 P U Q 54 distorted distorted 2656 2672 2673 2674 2691 P G Q 55 distorted distorted 2679 2692 2693 2694 2714 P C Q 56 distorted distorted 2699 2715 2716 2717 2734 P U Q 57 distorted distorted 2722 2735 2736 2737 2754 P C Q 58 distorted distorted 2742 2755 2756 2757 2774 P C Q 59 distorted distorted 2762 2775 2776 2777 2794 P G Q 60 distorted distorted 2782 2795 2796 2797 2817 P A Q 61 distorted distorted 2802 2818 2819 2820 2839 P A Q 62 distorted distorted 2825 2840 2841 2842 2861 P A Q 63 distorted distorted 2847 2862 2863 2864 2883 P G Q 64 distorted distorted 2869 2884 2885 2886 2906 P G Q 65 distorted distorted 2891 2907 2908 2909 2929 P A Q 66 distorted distorted 2914 2930 2931 2932 2951 P G Q 67 distorted distorted 2937 2952 2953 2954 2974 P C Q 68 distorted distorted 2959 2975 2976 2977 2994 P A Q 69 distorted distorted 2982 2995 2996 2997 3016 P C Q 70 distorted distorted 3002 3017 3018 3019 3036 P U Q 71 distorted distorted 3024 3037 3038 3039 ---------------------------------------------------------------------------------