ID code: '2N7M' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G X 0 alpha beta 4 27 10 7 44 C1' G X 1 alpha beta 39 62 45 42 78 C1' C X 2 alpha beta 73 93 79 76 109 C1' C X 3 alpha beta 104 124 110 107 140 C1' U X 4 alpha beta 135 155 141 138 170 C1' U X 5 alpha beta 165 185 171 168 200 C1' A X 6 alpha beta 195 217 201 198 233 C1' U X 7 alpha beta 228 248 234 231 263 C1' G X 8 alpha beta 258 281 264 261 297 C1' C X 9 alpha beta 292 312 298 295 328 C1' A X 10 alpha beta 323 345 329 326 361 C1' C X 11 alpha beta 356 376 362 359 392 C1' G X 12 alpha beta 387 410 393 390 426 C1' G X 13 alpha beta 421 444 427 424 460 C1' G X 14 alpha beta 455 478 461 458 494 C1' A X 15 alpha beta 489 511 495 492 527 C1' A X 16 alpha beta 522 544 528 525 560 C1' A X 17 alpha beta 555 577 561 558 593 C1' U X 18 alpha beta 588 608 594 591 623 C1' A X 19 alpha beta 618 640 624 621 656 C1' C X 20 alpha beta 651 671 657 654 687 C1' G X 21 alpha beta 682 705 688 685 721 C1' C X 22 alpha beta 716 736 722 719 752 C1' A X 23 alpha beta 747 769 753 750 785 C1' U X 24 alpha beta 780 800 786 783 815 C1' A X 25 alpha beta 810 832 816 813 848 C1' U X 26 alpha beta 843 863 849 846 878 C1' C X 27 alpha beta 873 893 879 876 909 C1' A X 28 alpha beta 904 926 910 907 942 C1' G X 29 alpha beta 937 960 943 940 976 C1' U X 30 alpha beta 971 991 977 974 1006 C1' G X 31 alpha beta 1001 1024 1007 1004 1040 C1' A X 32 alpha beta 1035 1057 1041 1038 1073 C1' G X 33 alpha beta 1068 1091 1074 1071 1107 C1' G X 34 alpha beta 1102 1125 1108 1105 1141 C1' A X 35 alpha beta 1136 1158 1142 1139 1174 C1' U X 36 alpha beta 1169 1189 1175 1172 1204 C1' U X 37 alpha beta 1199 1219 1205 1202 1234 C1' C X 38 alpha beta 1229 1249 1235 1232 1265 C1' G X 39 alpha beta 1260 1283 1266 1263 1299 C1' U X 40 alpha beta 1294 1314 1300 1297 1329 C1' C X 41 alpha beta 1324 1344 1330 1327 1360 C1' C X 42 alpha beta 1355 1375 1361 1358 1391 C1' G X 43 alpha beta 1386 1409 1392 1389 1425 C1' A X 44 alpha beta 1420 1442 1426 1423 1458 C1' G X 45 alpha beta 1453 1476 1459 1456 1492 C1' A X 46 alpha beta 1487 1509 1493 1490 1525 C1' U X 47 alpha beta 1520 1540 1526 1523 1555 C1' U X 48 alpha beta 1550 1570 1556 1553 1585 C1' G X 49 alpha beta 1580 1603 1586 1583 1619 C1' U X 50 alpha beta 1614 1634 1620 1617 1649 C1' G X 51 alpha beta 1644 1667 1650 1647 1683 C1' U X 52 alpha beta 1678 1698 1684 1681 1713 C1' U X 53 alpha beta 1708 1728 1714 1711 1743 C1' U X 54 alpha beta 1738 1758 1744 1741 1773 C1' U X 55 alpha beta 1768 1788 1774 1771 1803 C1' U X 56 alpha beta 1798 1818 1804 1801 1833 C1' G X 57 alpha beta 1828 1851 1834 1831 1867 C1' C X 58 alpha beta 1862 1882 1868 1865 1898 C1' U X 59 alpha beta 1893 1913 1899 1896 1928 C1' G X 60 alpha beta 1923 1946 1929 1926 1962 C1' G X 61 alpha beta 1957 1980 1963 1960 1996 C1' U X 62 alpha beta 1991 2011 1997 1994 2026 C1' G X 63 alpha beta 2021 2044 2027 2024 2060 C1' U X 64 alpha beta 2055 2075 2061 2058 2090 C1' A X 65 alpha beta 2085 2107 2091 2088 2123 C1' A X 66 alpha beta 2118 2140 2124 2121 2156 C1' A X 67 alpha beta 2151 2173 2157 2154 2189 C1' U X 68 alpha beta 2184 2204 2190 2187 2219 C1' C X 69 alpha beta 2214 2234 2220 2217 2250 C1' A X 70 alpha beta 2245 2267 2251 2248 2283 C1' G X 71 alpha beta 2278 2301 2284 2281 2317 C1' C X 72 alpha beta 2312 2332 2318 2315 2348 C1' A X 73 alpha beta 2343 2365 2349 2346 2381 C1' G X 74 alpha beta 2376 2399 2382 2379 2415 C1' U X 75 alpha beta 2410 2430 2416 2413 2445 C1' U X 76 alpha beta 2440 2460 2446 2443 2475 C1' C X 77 alpha beta 2470 2490 2476 2473 2506 C1' C X 78 alpha beta 2501 2521 2507 2504 2537 C1' C X 79 alpha beta 2532 2552 2538 2535 2568 C1' C X 80 alpha beta 2563 2583 2569 2566 2599 C1' U X 81 alpha beta 2594 2614 2600 2597 2629 C1' G X 82 alpha beta 2624 2647 2630 2627 2663 C1' C X 83 alpha beta 2658 2678 2664 2661 2694 C1' A X 84 alpha beta 2689 2711 2695 2692 2727 C1' U X 85 alpha beta 2722 2742 2728 2725 2757 C1' A X 86 alpha beta 2752 2774 2758 2755 2790 C1' A X 87 alpha beta 2785 2807 2791 2788 2823 C1' G X 88 alpha beta 2818 2841 2824 2821 2857 C1' G X 89 alpha beta 2852 2875 2858 2855 2891 C1' C X 90 alpha beta 2886 2906 2892 2889 2922 C1' U X 91 alpha beta 2917 2938 2923 2920 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G X 0 OK OK 9 5 25 8 42 C2' G X 1 OK OK 44 40 60 43 76 C2' C X 2 OK OK 78 74 91 77 107 C2' C X 3 OK OK 109 105 122 108 138 C2' U X 4 OK OK 140 136 153 139 168 C2' U X 5 OK OK 170 166 183 169 198 C2' A X 6 OK OK 200 196 215 199 231 C2' U X 7 OK OK 233 229 246 232 261 C2' G X 8 OK OK 263 259 279 262 295 C2' C X 9 OK OK 297 293 310 296 326 C2' A X 10 OK OK 328 324 343 327 359 C2' C X 11 OK OK 361 357 374 360 390 C2' G X 12 OK OK 392 388 408 391 424 C2' G X 13 OK OK 426 422 442 425 458 C2' G X 14 OK OK 460 456 476 459 492 C2' A X 15 OK OK 494 490 509 493 525 C2' A X 16 OK OK 527 523 542 526 558 C2' A X 17 OK OK 560 556 575 559 591 C2' U X 18 OK OK 593 589 606 592 621 C2' A X 19 OK OK 623 619 638 622 654 C2' C X 20 OK OK 656 652 669 655 685 C2' G X 21 OK OK 687 683 703 686 719 C2' C X 22 OK OK 721 717 734 720 750 C2' A X 23 OK OK 752 748 767 751 783 C2' U X 24 OK OK 785 781 798 784 813 C2' A X 25 OK OK 815 811 830 814 846 C2' U X 26 OK OK 848 844 861 847 876 C2' C X 27 OK OK 878 874 891 877 907 C2' A X 28 OK OK 909 905 924 908 940 C2' G X 29 OK OK 942 938 958 941 974 C2' U X 30 OK OK 976 972 989 975 1004 C2' G X 31 OK OK 1006 1002 1022 1005 1038 C2' A X 32 OK OK 1040 1036 1055 1039 1071 C2' G X 33 OK OK 1073 1069 1089 1072 1105 C2' G X 34 OK OK 1107 1103 1123 1106 1139 C2' A X 35 OK OK 1141 1137 1156 1140 1172 C2' U X 36 OK OK 1174 1170 1187 1173 1202 C2' U X 37 OK OK 1204 1200 1217 1203 1232 C2' C X 38 OK OK 1234 1230 1247 1233 1263 C2' G X 39 OK OK 1265 1261 1281 1264 1297 C2' U X 40 OK OK 1299 1295 1312 1298 1327 C2' C X 41 OK OK 1329 1325 1342 1328 1358 C2' C X 42 OK OK 1360 1356 1373 1359 1389 C2' G X 43 OK OK 1391 1387 1407 1390 1423 C2' A X 44 OK OK 1425 1421 1440 1424 1456 C2' G X 45 OK OK 1458 1454 1474 1457 1490 C2' A X 46 OK OK 1492 1488 1507 1491 1523 C2' U X 47 OK OK 1525 1521 1538 1524 1553 C2' U X 48 OK OK 1555 1551 1568 1554 1583 C2' G X 49 OK OK 1585 1581 1601 1584 1617 C2' U X 50 OK OK 1619 1615 1632 1618 1647 C2' G X 51 OK OK 1649 1645 1665 1648 1681 C2' U X 52 OK OK 1683 1679 1696 1682 1711 C2' U X 53 OK OK 1713 1709 1726 1712 1741 C2' U X 54 OK OK 1743 1739 1756 1742 1771 C2' U X 55 OK OK 1773 1769 1786 1772 1801 C2' U X 56 OK OK 1803 1799 1816 1802 1831 C2' G X 57 OK OK 1833 1829 1849 1832 1865 C2' C X 58 OK OK 1867 1863 1880 1866 1896 C2' U X 59 OK OK 1898 1894 1911 1897 1926 C2' G X 60 OK OK 1928 1924 1944 1927 1960 C2' G X 61 OK OK 1962 1958 1978 1961 1994 C2' U X 62 OK OK 1996 1992 2009 1995 2024 C2' G X 63 OK OK 2026 2022 2042 2025 2058 C2' U X 64 OK OK 2060 2056 2073 2059 2088 C2' A X 65 OK OK 2090 2086 2105 2089 2121 C2' A X 66 OK OK 2123 2119 2138 2122 2154 C2' A X 67 OK OK 2156 2152 2171 2155 2187 C2' U X 68 OK OK 2189 2185 2202 2188 2217 C2' C X 69 OK OK 2219 2215 2232 2218 2248 C2' A X 70 OK OK 2250 2246 2265 2249 2281 C2' G X 71 OK OK 2283 2279 2299 2282 2315 C2' C X 72 OK OK 2317 2313 2330 2316 2346 C2' A X 73 OK OK 2348 2344 2363 2347 2379 C2' G X 74 OK OK 2381 2377 2397 2380 2413 C2' U X 75 OK OK 2415 2411 2428 2414 2443 C2' U X 76 OK OK 2445 2441 2458 2444 2473 C2' C X 77 OK OK 2475 2471 2488 2474 2504 C2' C X 78 OK OK 2506 2502 2519 2505 2535 C2' C X 79 OK OK 2537 2533 2550 2536 2566 C2' C X 80 OK OK 2568 2564 2581 2567 2597 C2' U X 81 OK OK 2599 2595 2612 2598 2627 C2' G X 82 OK OK 2629 2625 2645 2628 2661 C2' C X 83 OK OK 2663 2659 2676 2662 2692 C2' A X 84 OK OK 2694 2690 2709 2693 2725 C2' U X 85 OK OK 2727 2723 2740 2726 2755 C2' A X 86 OK OK 2757 2753 2772 2756 2788 C2' A X 87 OK OK 2790 2786 2805 2789 2821 C2' G X 88 OK OK 2823 2819 2839 2822 2855 C2' G X 89 OK OK 2857 2853 2873 2856 2889 C2' C X 90 OK OK 2891 2887 2904 2890 2920 C2' U X 91 OK OK 2922 2918 2936 2921 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G X 0 OK OK 3 24 6 7 40 C3' G X 1 OK OK 38 59 41 42 74 C3' C X 2 OK OK 72 90 75 76 105 C3' C X 3 OK OK 103 121 106 107 136 C3' U X 4 OK OK 134 152 137 138 166 C3' U X 5 OK OK 164 182 167 168 196 C3' A X 6 OK OK 194 214 197 198 229 C3' U X 7 OK OK 227 245 230 231 259 C3' G X 8 OK OK 257 278 260 261 293 C3' C X 9 OK OK 291 309 294 295 324 C3' A X 10 OK OK 322 342 325 326 357 C3' C X 11 OK OK 355 373 358 359 388 C3' G X 12 OK OK 386 407 389 390 422 C3' G X 13 OK OK 420 441 423 424 456 C3' G X 14 OK OK 454 475 457 458 490 C3' A X 15 OK OK 488 508 491 492 523 C3' A X 16 OK OK 521 541 524 525 556 C3' A X 17 OK OK 554 574 557 558 589 C3' U X 18 OK OK 587 605 590 591 619 C3' A X 19 OK OK 617 637 620 621 652 C3' C X 20 OK OK 650 668 653 654 683 C3' G X 21 OK OK 681 702 684 685 717 C3' C X 22 OK OK 715 733 718 719 748 C3' A X 23 OK OK 746 766 749 750 781 C3' U X 24 OK OK 779 797 782 783 811 C3' A X 25 OK OK 809 829 812 813 844 C3' U X 26 OK OK 842 860 845 846 874 C3' C X 27 OK OK 872 890 875 876 905 C3' A X 28 OK OK 903 923 906 907 938 C3' G X 29 OK OK 936 957 939 940 972 C3' U X 30 OK OK 970 988 973 974 1002 C3' G X 31 OK OK 1000 1021 1003 1004 1036 C3' A X 32 OK OK 1034 1054 1037 1038 1069 C3' G X 33 OK OK 1067 1088 1070 1071 1103 C3' G X 34 OK OK 1101 1122 1104 1105 1137 C3' A X 35 OK OK 1135 1155 1138 1139 1170 C3' U X 36 OK OK 1168 1186 1171 1172 1200 C3' U X 37 OK OK 1198 1216 1201 1202 1230 C3' C X 38 OK OK 1228 1246 1231 1232 1261 C3' G X 39 OK OK 1259 1280 1262 1263 1295 C3' U X 40 OK OK 1293 1311 1296 1297 1325 C3' C X 41 OK OK 1323 1341 1326 1327 1356 C3' C X 42 OK OK 1354 1372 1357 1358 1387 C3' G X 43 OK OK 1385 1406 1388 1389 1421 C3' A X 44 OK OK 1419 1439 1422 1423 1454 C3' G X 45 OK OK 1452 1473 1455 1456 1488 C3' A X 46 OK OK 1486 1506 1489 1490 1521 C3' U X 47 OK OK 1519 1537 1522 1523 1551 C3' U X 48 OK OK 1549 1567 1552 1553 1581 C3' G X 49 OK OK 1579 1600 1582 1583 1615 C3' U X 50 OK OK 1613 1631 1616 1617 1645 C3' G X 51 OK OK 1643 1664 1646 1647 1679 C3' U X 52 OK OK 1677 1695 1680 1681 1709 C3' U X 53 OK OK 1707 1725 1710 1711 1739 C3' U X 54 OK OK 1737 1755 1740 1741 1769 C3' U X 55 OK OK 1767 1785 1770 1771 1799 C3' U X 56 OK OK 1797 1815 1800 1801 1829 C3' G X 57 OK OK 1827 1848 1830 1831 1863 C3' C X 58 OK OK 1861 1879 1864 1865 1894 C3' U X 59 OK OK 1892 1910 1895 1896 1924 C3' G X 60 OK OK 1922 1943 1925 1926 1958 C3' G X 61 OK OK 1956 1977 1959 1960 1992 C3' U X 62 OK OK 1990 2008 1993 1994 2022 C3' G X 63 OK OK 2020 2041 2023 2024 2056 C3' U X 64 OK OK 2054 2072 2057 2058 2086 C3' A X 65 OK OK 2084 2104 2087 2088 2119 C3' A X 66 OK OK 2117 2137 2120 2121 2152 C3' A X 67 OK OK 2150 2170 2153 2154 2185 C3' U X 68 OK OK 2183 2201 2186 2187 2215 C3' C X 69 OK OK 2213 2231 2216 2217 2246 C3' A X 70 OK OK 2244 2264 2247 2248 2279 C3' G X 71 OK OK 2277 2298 2280 2281 2313 C3' C X 72 OK OK 2311 2329 2314 2315 2344 C3' A X 73 OK OK 2342 2362 2345 2346 2377 C3' G X 74 OK OK 2375 2396 2378 2379 2411 C3' U X 75 OK OK 2409 2427 2412 2413 2441 C3' U X 76 OK OK 2439 2457 2442 2443 2471 C3' C X 77 OK OK 2469 2487 2472 2473 2502 C3' C X 78 OK OK 2500 2518 2503 2504 2533 C3' C X 79 OK OK 2531 2549 2534 2535 2564 C3' C X 80 OK OK 2562 2580 2565 2566 2595 C3' U X 81 OK OK 2593 2611 2596 2597 2625 C3' G X 82 OK OK 2623 2644 2626 2627 2659 C3' C X 83 OK OK 2657 2675 2660 2661 2690 C3' A X 84 OK OK 2688 2708 2691 2692 2723 C3' U X 85 OK OK 2721 2739 2724 2725 2753 C3' A X 86 OK OK 2751 2771 2754 2755 2786 C3' A X 87 OK OK 2784 2804 2787 2788 2819 C3' G X 88 OK OK 2817 2838 2820 2821 2853 C3' G X 89 OK OK 2851 2872 2854 2855 2887 C3' C X 90 OK OK 2885 2903 2888 2889 2918 C3' U X 91 OK OK 2916 2934 2919 2920 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G X 0 OK OK 5 23 2 4 38 C4' G X 1 OK OK 40 58 37 39 72 C4' C X 2 OK OK 74 89 71 73 103 C4' C X 3 OK OK 105 120 102 104 134 C4' U X 4 OK OK 136 151 133 135 164 C4' U X 5 OK OK 166 181 163 165 194 C4' A X 6 OK OK 196 213 193 195 227 C4' U X 7 OK OK 229 244 226 228 257 C4' G X 8 OK OK 259 277 256 258 291 C4' C X 9 OK OK 293 308 290 292 322 C4' A X 10 OK OK 324 341 321 323 355 C4' C X 11 OK OK 357 372 354 356 386 C4' G X 12 OK OK 388 406 385 387 420 C4' G X 13 OK OK 422 440 419 421 454 C4' G X 14 OK OK 456 474 453 455 488 C4' A X 15 OK OK 490 507 487 489 521 C4' A X 16 OK OK 523 540 520 522 554 C4' A X 17 OK OK 556 573 553 555 587 C4' U X 18 OK OK 589 604 586 588 617 C4' A X 19 OK OK 619 636 616 618 650 C4' C X 20 OK OK 652 667 649 651 681 C4' G X 21 OK OK 683 701 680 682 715 C4' C X 22 OK OK 717 732 714 716 746 C4' A X 23 OK OK 748 765 745 747 779 C4' U X 24 OK OK 781 796 778 780 809 C4' A X 25 OK OK 811 828 808 810 842 C4' U X 26 OK OK 844 859 841 843 872 C4' C X 27 OK OK 874 889 871 873 903 C4' A X 28 OK OK 905 922 902 904 936 C4' G X 29 OK OK 938 956 935 937 970 C4' U X 30 OK OK 972 987 969 971 1000 C4' G X 31 OK OK 1002 1020 999 1001 1034 C4' A X 32 OK OK 1036 1053 1033 1035 1067 C4' G X 33 OK OK 1069 1087 1066 1068 1101 C4' G X 34 OK OK 1103 1121 1100 1102 1135 C4' A X 35 OK OK 1137 1154 1134 1136 1168 C4' U X 36 OK OK 1170 1185 1167 1169 1198 C4' U X 37 OK OK 1200 1215 1197 1199 1228 C4' C X 38 OK OK 1230 1245 1227 1229 1259 C4' G X 39 OK OK 1261 1279 1258 1260 1293 C4' U X 40 OK OK 1295 1310 1292 1294 1323 C4' C X 41 OK OK 1325 1340 1322 1324 1354 C4' C X 42 OK OK 1356 1371 1353 1355 1385 C4' G X 43 OK OK 1387 1405 1384 1386 1419 C4' A X 44 OK OK 1421 1438 1418 1420 1452 C4' G X 45 OK OK 1454 1472 1451 1453 1486 C4' A X 46 OK OK 1488 1505 1485 1487 1519 C4' U X 47 OK OK 1521 1536 1518 1520 1549 C4' U X 48 OK OK 1551 1566 1548 1550 1579 C4' G X 49 OK OK 1581 1599 1578 1580 1613 C4' U X 50 OK OK 1615 1630 1612 1614 1643 C4' G X 51 OK OK 1645 1663 1642 1644 1677 C4' U X 52 OK OK 1679 1694 1676 1678 1707 C4' U X 53 OK OK 1709 1724 1706 1708 1737 C4' U X 54 OK OK 1739 1754 1736 1738 1767 C4' U X 55 OK OK 1769 1784 1766 1768 1797 C4' U X 56 OK OK 1799 1814 1796 1798 1827 C4' G X 57 OK OK 1829 1847 1826 1828 1861 C4' C X 58 OK OK 1863 1878 1860 1862 1892 C4' U X 59 OK OK 1894 1909 1891 1893 1922 C4' G X 60 OK OK 1924 1942 1921 1923 1956 C4' G X 61 OK OK 1958 1976 1955 1957 1990 C4' U X 62 OK OK 1992 2007 1989 1991 2020 C4' G X 63 OK OK 2022 2040 2019 2021 2054 C4' U X 64 OK OK 2056 2071 2053 2055 2084 C4' A X 65 OK OK 2086 2103 2083 2085 2117 C4' A X 66 OK OK 2119 2136 2116 2118 2150 C4' A X 67 OK OK 2152 2169 2149 2151 2183 C4' U X 68 OK OK 2185 2200 2182 2184 2213 C4' C X 69 OK OK 2215 2230 2212 2214 2244 C4' A X 70 OK OK 2246 2263 2243 2245 2277 C4' G X 71 OK OK 2279 2297 2276 2278 2311 C4' C X 72 OK OK 2313 2328 2310 2312 2342 C4' A X 73 OK OK 2344 2361 2341 2343 2375 C4' G X 74 OK OK 2377 2395 2374 2376 2409 C4' U X 75 OK OK 2411 2426 2408 2410 2439 C4' U X 76 OK OK 2441 2456 2438 2440 2469 C4' C X 77 OK OK 2471 2486 2468 2470 2500 C4' C X 78 OK OK 2502 2517 2499 2501 2531 C4' C X 79 OK OK 2533 2548 2530 2532 2562 C4' C X 80 OK OK 2564 2579 2561 2563 2593 C4' U X 81 OK OK 2595 2610 2592 2594 2623 C4' G X 82 OK OK 2625 2643 2622 2624 2657 C4' C X 83 OK OK 2659 2674 2656 2658 2688 C4' A X 84 OK OK 2690 2707 2687 2689 2721 C4' U X 85 OK OK 2723 2738 2720 2722 2751 C4' A X 86 OK OK 2753 2770 2750 2752 2784 C4' A X 87 OK OK 2786 2803 2783 2785 2817 C4' G X 88 OK OK 2819 2837 2816 2818 2851 C4' G X 89 OK OK 2853 2871 2850 2852 2885 C4' C X 90 OK OK 2887 2902 2884 2886 2916 C4' U X 91 OK OK 2918 2933 2915 2917 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G X 0 OK OK 1 21 22 3 37 C5' G X 1 OK OK 36 56 57 38 71 C5' C X 2 OK OK 70 87 88 72 102 C5' C X 3 OK OK 101 118 119 103 133 C5' U X 4 OK OK 132 149 150 134 163 C5' U X 5 OK OK 162 179 180 164 193 C5' A X 6 OK OK 192 211 212 194 226 C5' U X 7 OK OK 225 242 243 227 256 C5' G X 8 OK OK 255 275 276 257 290 C5' C X 9 OK OK 289 306 307 291 321 C5' A X 10 OK OK 320 339 340 322 354 C5' C X 11 OK OK 353 370 371 355 385 C5' G X 12 OK OK 384 404 405 386 419 C5' G X 13 OK OK 418 438 439 420 453 C5' G X 14 OK OK 452 472 473 454 487 C5' A X 15 OK OK 486 505 506 488 520 C5' A X 16 OK OK 519 538 539 521 553 C5' A X 17 OK OK 552 571 572 554 586 C5' U X 18 OK OK 585 602 603 587 616 C5' A X 19 OK OK 615 634 635 617 649 C5' C X 20 OK OK 648 665 666 650 680 C5' G X 21 OK OK 679 699 700 681 714 C5' C X 22 OK OK 713 730 731 715 745 C5' A X 23 OK OK 744 763 764 746 778 C5' U X 24 OK OK 777 794 795 779 808 C5' A X 25 OK OK 807 826 827 809 841 C5' U X 26 OK OK 840 857 858 842 871 C5' C X 27 OK OK 870 887 888 872 902 C5' A X 28 OK OK 901 920 921 903 935 C5' G X 29 OK OK 934 954 955 936 969 C5' U X 30 OK OK 968 985 986 970 999 C5' G X 31 OK OK 998 1018 1019 1000 1033 C5' A X 32 OK OK 1032 1051 1052 1034 1066 C5' G X 33 OK OK 1065 1085 1086 1067 1100 C5' G X 34 OK OK 1099 1119 1120 1101 1134 C5' A X 35 OK OK 1133 1152 1153 1135 1167 C5' U X 36 OK OK 1166 1183 1184 1168 1197 C5' U X 37 OK OK 1196 1213 1214 1198 1227 C5' C X 38 OK OK 1226 1243 1244 1228 1258 C5' G X 39 OK OK 1257 1277 1278 1259 1292 C5' U X 40 OK OK 1291 1308 1309 1293 1322 C5' C X 41 OK OK 1321 1338 1339 1323 1353 C5' C X 42 OK OK 1352 1369 1370 1354 1384 C5' G X 43 OK OK 1383 1403 1404 1385 1418 C5' A X 44 OK OK 1417 1436 1437 1419 1451 C5' G X 45 OK OK 1450 1470 1471 1452 1485 C5' A X 46 OK OK 1484 1503 1504 1486 1518 C5' U X 47 OK OK 1517 1534 1535 1519 1548 C5' U X 48 OK OK 1547 1564 1565 1549 1578 C5' G X 49 OK OK 1577 1597 1598 1579 1612 C5' U X 50 OK OK 1611 1628 1629 1613 1642 C5' G X 51 OK OK 1641 1661 1662 1643 1676 C5' U X 52 OK OK 1675 1692 1693 1677 1706 C5' U X 53 OK OK 1705 1722 1723 1707 1736 C5' U X 54 OK OK 1735 1752 1753 1737 1766 C5' U X 55 OK OK 1765 1782 1783 1767 1796 C5' U X 56 OK OK 1795 1812 1813 1797 1826 C5' G X 57 OK OK 1825 1845 1846 1827 1860 C5' C X 58 OK OK 1859 1876 1877 1861 1891 C5' U X 59 OK OK 1890 1907 1908 1892 1921 C5' G X 60 OK OK 1920 1940 1941 1922 1955 C5' G X 61 OK OK 1954 1974 1975 1956 1989 C5' U X 62 OK OK 1988 2005 2006 1990 2019 C5' G X 63 OK OK 2018 2038 2039 2020 2053 C5' U X 64 OK OK 2052 2069 2070 2054 2083 C5' A X 65 OK OK 2082 2101 2102 2084 2116 C5' A X 66 OK OK 2115 2134 2135 2117 2149 C5' A X 67 OK OK 2148 2167 2168 2150 2182 C5' U X 68 OK OK 2181 2198 2199 2183 2212 C5' C X 69 OK OK 2211 2228 2229 2213 2243 C5' A X 70 OK OK 2242 2261 2262 2244 2276 C5' G X 71 OK OK 2275 2295 2296 2277 2310 C5' C X 72 OK OK 2309 2326 2327 2311 2341 C5' A X 73 OK OK 2340 2359 2360 2342 2374 C5' G X 74 OK OK 2373 2393 2394 2375 2408 C5' U X 75 OK OK 2407 2424 2425 2409 2438 C5' U X 76 OK OK 2437 2454 2455 2439 2468 C5' C X 77 OK OK 2467 2484 2485 2469 2499 C5' C X 78 OK OK 2498 2515 2516 2500 2530 C5' C X 79 OK OK 2529 2546 2547 2531 2561 C5' C X 80 OK OK 2560 2577 2578 2562 2592 C5' U X 81 OK OK 2591 2608 2609 2593 2622 C5' G X 82 OK OK 2621 2641 2642 2623 2656 C5' C X 83 OK OK 2655 2672 2673 2657 2687 C5' A X 84 OK OK 2686 2705 2706 2688 2720 C5' U X 85 OK OK 2719 2736 2737 2721 2750 C5' A X 86 OK OK 2749 2768 2769 2751 2783 C5' A X 87 OK OK 2782 2801 2802 2784 2816 C5' G X 88 OK OK 2815 2835 2836 2817 2850 C5' G X 89 OK OK 2849 2869 2870 2851 2884 C5' C X 90 OK OK 2883 2900 2901 2885 2915 C5' U X 91 OK OK 2914 2931 2932 2916 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 33 P G X 1 distorted distorted 6 34 35 36 67 P C X 2 distorted distorted 41 68 69 70 98 P C X 3 distorted distorted 75 99 100 101 129 P U X 4 distorted distorted 106 130 131 132 159 P U X 5 distorted distorted 137 160 161 162 189 P A X 6 distorted distorted 167 190 191 192 222 P U X 7 distorted distorted 197 223 224 225 252 P G X 8 distorted distorted 230 253 254 255 286 P C X 9 distorted distorted 260 287 288 289 317 P A X 10 distorted distorted 294 318 319 320 350 P C X 11 distorted distorted 325 351 352 353 381 P G X 12 distorted distorted 358 382 383 384 415 P G X 13 distorted distorted 389 416 417 418 449 P G X 14 distorted distorted 423 450 451 452 483 P A X 15 distorted distorted 457 484 485 486 516 P A X 16 distorted distorted 491 517 518 519 549 P A X 17 distorted distorted 524 550 551 552 582 P U X 18 distorted distorted 557 583 584 585 612 P A X 19 distorted distorted 590 613 614 615 645 P C X 20 distorted distorted 620 646 647 648 676 P G X 21 distorted distorted 653 677 678 679 710 P C X 22 distorted distorted 684 711 712 713 741 P A X 23 distorted distorted 718 742 743 744 774 P U X 24 distorted distorted 749 775 776 777 804 P A X 25 distorted distorted 782 805 806 807 837 P U X 26 distorted distorted 812 838 839 840 867 P C X 27 distorted distorted 845 868 869 870 898 P A X 28 distorted distorted 875 899 900 901 931 P G X 29 distorted distorted 906 932 933 934 965 P U X 30 distorted distorted 939 966 967 968 995 P G X 31 distorted distorted 973 996 997 998 1029 P A X 32 distorted distorted 1003 1030 1031 1032 1062 P G X 33 distorted distorted 1037 1063 1064 1065 1096 P G X 34 distorted distorted 1070 1097 1098 1099 1130 P A X 35 distorted distorted 1104 1131 1132 1133 1163 P U X 36 distorted distorted 1138 1164 1165 1166 1193 P U X 37 distorted distorted 1171 1194 1195 1196 1223 P C X 38 distorted distorted 1201 1224 1225 1226 1254 P G X 39 distorted distorted 1231 1255 1256 1257 1288 P U X 40 distorted distorted 1262 1289 1290 1291 1318 P C X 41 distorted distorted 1296 1319 1320 1321 1349 P C X 42 distorted distorted 1326 1350 1351 1352 1380 P G X 43 distorted distorted 1357 1381 1382 1383 1414 P A X 44 distorted distorted 1388 1415 1416 1417 1447 P G X 45 distorted distorted 1422 1448 1449 1450 1481 P A X 46 distorted distorted 1455 1482 1483 1484 1514 P U X 47 distorted distorted 1489 1515 1516 1517 1544 P U X 48 distorted distorted 1522 1545 1546 1547 1574 P G X 49 distorted distorted 1552 1575 1576 1577 1608 P U X 50 distorted distorted 1582 1609 1610 1611 1638 P G X 51 distorted distorted 1616 1639 1640 1641 1672 P U X 52 distorted distorted 1646 1673 1674 1675 1702 P U X 53 distorted distorted 1680 1703 1704 1705 1732 P U X 54 distorted distorted 1710 1733 1734 1735 1762 P U X 55 distorted distorted 1740 1763 1764 1765 1792 P U X 56 distorted distorted 1770 1793 1794 1795 1822 P G X 57 distorted distorted 1800 1823 1824 1825 1856 P C X 58 distorted distorted 1830 1857 1858 1859 1887 P U X 59 distorted distorted 1864 1888 1889 1890 1917 P G X 60 distorted distorted 1895 1918 1919 1920 1951 P G X 61 distorted distorted 1925 1952 1953 1954 1985 P U X 62 distorted distorted 1959 1986 1987 1988 2015 P G X 63 distorted distorted 1993 2016 2017 2018 2049 P U X 64 distorted distorted 2023 2050 2051 2052 2079 P A X 65 distorted distorted 2057 2080 2081 2082 2112 P A X 66 distorted distorted 2087 2113 2114 2115 2145 P A X 67 distorted distorted 2120 2146 2147 2148 2178 P U X 68 distorted distorted 2153 2179 2180 2181 2208 P C X 69 distorted distorted 2186 2209 2210 2211 2239 P A X 70 distorted distorted 2216 2240 2241 2242 2272 P G X 71 distorted distorted 2247 2273 2274 2275 2306 P C X 72 distorted distorted 2280 2307 2308 2309 2337 P A X 73 distorted distorted 2314 2338 2339 2340 2370 P G X 74 distorted distorted 2345 2371 2372 2373 2404 P U X 75 distorted distorted 2378 2405 2406 2407 2434 P U X 76 distorted distorted 2412 2435 2436 2437 2464 P C X 77 distorted distorted 2442 2465 2466 2467 2495 P C X 78 distorted distorted 2472 2496 2497 2498 2526 P C X 79 distorted distorted 2503 2527 2528 2529 2557 P C X 80 distorted distorted 2534 2558 2559 2560 2588 P U X 81 distorted distorted 2565 2589 2590 2591 2618 P G X 82 distorted distorted 2596 2619 2620 2621 2652 P C X 83 distorted distorted 2626 2653 2654 2655 2683 P A X 84 distorted distorted 2660 2684 2685 2686 2716 P U X 85 distorted distorted 2691 2717 2718 2719 2746 P A X 86 distorted distorted 2724 2747 2748 2749 2779 P A X 87 distorted distorted 2754 2780 2781 2782 2812 P G X 88 distorted distorted 2787 2813 2814 2815 2846 P G X 89 distorted distorted 2820 2847 2848 2849 2880 P C X 90 distorted distorted 2854 2881 2882 2883 2911 P U X 91 distorted distorted 2888 2912 2913 2914 ---------------------------------------------------------------------------------