ID code: '2MS1' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 881 C1' G B 1 alpha beta 876 899 882 879 916 C1' G B 2 alpha beta 911 934 917 914 950 C1' C B 3 alpha beta 945 965 951 948 981 C1' U B 4 alpha beta 976 996 982 979 1011 C1' C B 5 alpha beta 1006 1026 1012 1009 1042 C1' G B 6 alpha beta 1037 1060 1043 1040 1076 C1' U B 7 alpha beta 1071 1091 1077 1074 1106 C1' U B 8 alpha beta 1101 1121 1107 1104 1136 C1' G B 9 alpha beta 1131 1154 1137 1134 1170 C1' G B 10 alpha beta 1165 1188 1171 1168 1204 C1' U B 11 alpha beta 1199 1219 1205 1202 1234 C1' C B 12 alpha beta 1229 1249 1235 1232 1265 C1' U B 13 alpha beta 1260 1280 1266 1263 1295 C1' A B 14 alpha beta 1290 1312 1296 1293 1328 C1' G B 15 alpha beta 1323 1346 1329 1326 1362 C1' G B 16 alpha beta 1357 1380 1363 1360 1396 C1' G B 18 alpha beta 1391 1414 1397 1394 1430 C1' G B 19 alpha beta 1425 1448 1431 1428 1464 C1' U B 20 alpha beta 1459 1479 1465 1462 1494 C1' A B 21 alpha beta 1489 1511 1495 1492 1527 C1' U B 22 alpha beta 1522 1542 1528 1525 1557 C1' G B 23 alpha beta 1552 1575 1558 1555 1591 C1' A B 24 alpha beta 1586 1608 1592 1589 1624 C1' U B 25 alpha beta 1619 1639 1625 1622 1654 C1' U B 26 alpha beta 1649 1669 1655 1652 1684 C1' C B 27 alpha beta 1679 1699 1685 1682 1715 C1' U B 28 alpha beta 1710 1730 1716 1713 1745 C1' C B 29 alpha beta 1740 1760 1746 1743 1776 C1' G B 30 alpha beta 1771 1794 1777 1774 1810 C1' C B 31 alpha beta 1805 1825 1811 1808 1841 C1' U B 32 alpha beta 1836 1856 1842 1839 1871 C1' U B 33 alpha beta 1866 1886 1872 1869 1901 C1' A B 34 alpha beta 1896 1918 1902 1899 1934 C1' G B 35 alpha beta 1929 1952 1935 1932 1968 C1' G B 36 alpha beta 1963 1986 1969 1966 2002 C1' G B 37 alpha beta 1997 2020 2003 2000 2036 C1' U B 38 alpha beta 2031 2051 2037 2034 2066 C1' G B 39 alpha beta 2061 2084 2067 2064 2100 C1' C B 40 alpha beta 2095 2115 2101 2098 2131 C1' G B 41 alpha beta 2126 2149 2132 2129 2165 C1' A B 42 alpha beta 2160 2182 2166 2163 2198 C1' G B 43 alpha beta 2193 2216 2199 2196 2232 C1' A B 44 alpha beta 2227 2249 2233 2230 2265 C1' G B 45 alpha beta 2260 2283 2266 2263 2299 C1' G B 46 alpha beta 2294 2317 2300 2297 2333 C1' U B 47 alpha beta 2328 2348 2334 2331 2363 C1' C B 48 alpha beta 2358 2378 2364 2361 2394 C1' C B 49 alpha beta 2389 2409 2395 2392 2425 C1' C B 50 alpha beta 2420 2440 2426 2423 2456 C1' G B 51 alpha beta 2451 2474 2457 2454 2490 C1' G B 52 alpha beta 2485 2508 2491 2488 2524 C1' G B 53 alpha beta 2519 2542 2525 2522 2558 C1' U B 54 alpha beta 2553 2573 2559 2556 2588 C1' U B 55 alpha beta 2583 2603 2589 2586 2618 C1' C B 56 alpha beta 2613 2633 2619 2616 2649 C1' A B 57 alpha beta 2644 2666 2650 2647 2682 C1' A B 58 alpha beta 2677 2699 2683 2680 2715 C1' A B 59 alpha beta 2710 2732 2716 2713 2748 C1' U B 60 alpha beta 2743 2763 2749 2746 2778 C1' C B 61 alpha beta 2773 2793 2779 2776 2809 C1' C B 62 alpha beta 2804 2824 2810 2807 2840 C1' C B 63 alpha beta 2835 2855 2841 2838 2871 C1' G B 64 alpha beta 2866 2889 2872 2869 2905 C1' G B 65 alpha beta 2900 2923 2906 2903 2939 C1' A B 66 alpha beta 2934 2956 2940 2937 2972 C1' C B 67 alpha beta 2967 2987 2973 2970 3003 C1' G B 68 alpha beta 2998 3021 3004 3001 3037 C1' A B 69 alpha beta 3032 3054 3038 3035 3070 C1' G B 70 alpha beta 3065 3088 3071 3068 3104 C1' C B 71 alpha beta 3099 3119 3105 3102 3135 C1' C B 72 alpha beta 3130 3151 3136 3133 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 879 C2' G B 1 OK OK 881 877 897 880 914 C2' G B 2 OK OK 916 912 932 915 948 C2' C B 3 OK OK 950 946 963 949 979 C2' U B 4 OK OK 981 977 994 980 1009 C2' C B 5 OK OK 1011 1007 1024 1010 1040 C2' G B 6 OK OK 1042 1038 1058 1041 1074 C2' U B 7 OK OK 1076 1072 1089 1075 1104 C2' U B 8 OK OK 1106 1102 1119 1105 1134 C2' G B 9 OK OK 1136 1132 1152 1135 1168 C2' G B 10 OK OK 1170 1166 1186 1169 1202 C2' U B 11 OK OK 1204 1200 1217 1203 1232 C2' C B 12 OK OK 1234 1230 1247 1233 1263 C2' U B 13 OK OK 1265 1261 1278 1264 1293 C2' A B 14 OK OK 1295 1291 1310 1294 1326 C2' G B 15 OK OK 1328 1324 1344 1327 1360 C2' G B 16 OK OK 1362 1358 1378 1361 1394 C2' G B 18 OK OK 1396 1392 1412 1395 1428 C2' G B 19 OK OK 1430 1426 1446 1429 1462 C2' U B 20 OK OK 1464 1460 1477 1463 1492 C2' A B 21 OK OK 1494 1490 1509 1493 1525 C2' U B 22 OK OK 1527 1523 1540 1526 1555 C2' G B 23 OK OK 1557 1553 1573 1556 1589 C2' A B 24 OK OK 1591 1587 1606 1590 1622 C2' U B 25 OK OK 1624 1620 1637 1623 1652 C2' U B 26 OK OK 1654 1650 1667 1653 1682 C2' C B 27 OK OK 1684 1680 1697 1683 1713 C2' U B 28 OK OK 1715 1711 1728 1714 1743 C2' C B 29 OK OK 1745 1741 1758 1744 1774 C2' G B 30 OK OK 1776 1772 1792 1775 1808 C2' C B 31 OK OK 1810 1806 1823 1809 1839 C2' U B 32 OK OK 1841 1837 1854 1840 1869 C2' U B 33 OK OK 1871 1867 1884 1870 1899 C2' A B 34 OK OK 1901 1897 1916 1900 1932 C2' G B 35 OK OK 1934 1930 1950 1933 1966 C2' G B 36 OK OK 1968 1964 1984 1967 2000 C2' G B 37 OK OK 2002 1998 2018 2001 2034 C2' U B 38 OK OK 2036 2032 2049 2035 2064 C2' G B 39 OK OK 2066 2062 2082 2065 2098 C2' C B 40 OK OK 2100 2096 2113 2099 2129 C2' G B 41 OK OK 2131 2127 2147 2130 2163 C2' A B 42 OK OK 2165 2161 2180 2164 2196 C2' G B 43 OK OK 2198 2194 2214 2197 2230 C2' A B 44 OK OK 2232 2228 2247 2231 2263 C2' G B 45 OK OK 2265 2261 2281 2264 2297 C2' G B 46 OK OK 2299 2295 2315 2298 2331 C2' U B 47 OK OK 2333 2329 2346 2332 2361 C2' C B 48 OK OK 2363 2359 2376 2362 2392 C2' C B 49 OK OK 2394 2390 2407 2393 2423 C2' C B 50 OK OK 2425 2421 2438 2424 2454 C2' G B 51 OK OK 2456 2452 2472 2455 2488 C2' G B 52 OK OK 2490 2486 2506 2489 2522 C2' G B 53 OK OK 2524 2520 2540 2523 2556 C2' U B 54 OK OK 2558 2554 2571 2557 2586 C2' U B 55 OK OK 2588 2584 2601 2587 2616 C2' C B 56 OK OK 2618 2614 2631 2617 2647 C2' A B 57 OK OK 2649 2645 2664 2648 2680 C2' A B 58 OK OK 2682 2678 2697 2681 2713 C2' A B 59 OK OK 2715 2711 2730 2714 2746 C2' U B 60 OK OK 2748 2744 2761 2747 2776 C2' C B 61 OK OK 2778 2774 2791 2777 2807 C2' C B 62 OK OK 2809 2805 2822 2808 2838 C2' C B 63 OK OK 2840 2836 2853 2839 2869 C2' G B 64 OK OK 2871 2867 2887 2870 2903 C2' G B 65 OK OK 2905 2901 2921 2904 2937 C2' A B 66 OK OK 2939 2935 2954 2938 2970 C2' C B 67 OK OK 2972 2968 2985 2971 3001 C2' G B 68 OK OK 3003 2999 3019 3002 3035 C2' A B 69 OK OK 3037 3033 3052 3036 3068 C2' G B 70 OK OK 3070 3066 3086 3069 3102 C2' C B 71 OK OK 3104 3100 3117 3103 3133 C2' C B 72 OK OK 3135 3131 3149 3134 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 877 C3' G B 1 OK OK 875 896 878 879 912 C3' G B 2 OK OK 910 931 913 914 946 C3' C B 3 OK OK 944 962 947 948 977 C3' U B 4 OK OK 975 993 978 979 1007 C3' C B 5 OK OK 1005 1023 1008 1009 1038 C3' G B 6 OK OK 1036 1057 1039 1040 1072 C3' U B 7 OK OK 1070 1088 1073 1074 1102 C3' U B 8 OK OK 1100 1118 1103 1104 1132 C3' G B 9 OK OK 1130 1151 1133 1134 1166 C3' G B 10 OK OK 1164 1185 1167 1168 1200 C3' U B 11 OK OK 1198 1216 1201 1202 1230 C3' C B 12 OK OK 1228 1246 1231 1232 1261 C3' U B 13 OK OK 1259 1277 1262 1263 1291 C3' A B 14 OK OK 1289 1309 1292 1293 1324 C3' G B 15 OK OK 1322 1343 1325 1326 1358 C3' G B 16 OK OK 1356 1377 1359 1360 1392 C3' G B 18 OK OK 1390 1411 1393 1394 1426 C3' G B 19 OK OK 1424 1445 1427 1428 1460 C3' U B 20 OK OK 1458 1476 1461 1462 1490 C3' A B 21 OK OK 1488 1508 1491 1492 1523 C3' U B 22 OK OK 1521 1539 1524 1525 1553 C3' G B 23 OK OK 1551 1572 1554 1555 1587 C3' A B 24 OK OK 1585 1605 1588 1589 1620 C3' U B 25 OK OK 1618 1636 1621 1622 1650 C3' U B 26 OK OK 1648 1666 1651 1652 1680 C3' C B 27 OK OK 1678 1696 1681 1682 1711 C3' U B 28 OK OK 1709 1727 1712 1713 1741 C3' C B 29 OK OK 1739 1757 1742 1743 1772 C3' G B 30 OK OK 1770 1791 1773 1774 1806 C3' C B 31 OK OK 1804 1822 1807 1808 1837 C3' U B 32 OK OK 1835 1853 1838 1839 1867 C3' U B 33 OK OK 1865 1883 1868 1869 1897 C3' A B 34 OK OK 1895 1915 1898 1899 1930 C3' G B 35 OK OK 1928 1949 1931 1932 1964 C3' G B 36 OK OK 1962 1983 1965 1966 1998 C3' G B 37 OK OK 1996 2017 1999 2000 2032 C3' U B 38 OK OK 2030 2048 2033 2034 2062 C3' G B 39 OK OK 2060 2081 2063 2064 2096 C3' C B 40 OK OK 2094 2112 2097 2098 2127 C3' G B 41 OK OK 2125 2146 2128 2129 2161 C3' A B 42 OK OK 2159 2179 2162 2163 2194 C3' G B 43 OK OK 2192 2213 2195 2196 2228 C3' A B 44 OK OK 2226 2246 2229 2230 2261 C3' G B 45 OK OK 2259 2280 2262 2263 2295 C3' G B 46 OK OK 2293 2314 2296 2297 2329 C3' U B 47 OK OK 2327 2345 2330 2331 2359 C3' C B 48 OK OK 2357 2375 2360 2361 2390 C3' C B 49 OK OK 2388 2406 2391 2392 2421 C3' C B 50 OK OK 2419 2437 2422 2423 2452 C3' G B 51 OK OK 2450 2471 2453 2454 2486 C3' G B 52 OK OK 2484 2505 2487 2488 2520 C3' G B 53 OK OK 2518 2539 2521 2522 2554 C3' U B 54 OK OK 2552 2570 2555 2556 2584 C3' U B 55 OK OK 2582 2600 2585 2586 2614 C3' C B 56 OK OK 2612 2630 2615 2616 2645 C3' A B 57 OK OK 2643 2663 2646 2647 2678 C3' A B 58 OK OK 2676 2696 2679 2680 2711 C3' A B 59 OK OK 2709 2729 2712 2713 2744 C3' U B 60 OK OK 2742 2760 2745 2746 2774 C3' C B 61 OK OK 2772 2790 2775 2776 2805 C3' C B 62 OK OK 2803 2821 2806 2807 2836 C3' C B 63 OK OK 2834 2852 2837 2838 2867 C3' G B 64 OK OK 2865 2886 2868 2869 2901 C3' G B 65 OK OK 2899 2920 2902 2903 2935 C3' A B 66 OK OK 2933 2953 2936 2937 2968 C3' C B 67 OK OK 2966 2984 2969 2970 2999 C3' G B 68 OK OK 2997 3018 3000 3001 3033 C3' A B 69 OK OK 3031 3051 3034 3035 3066 C3' G B 70 OK OK 3064 3085 3067 3068 3100 C3' C B 71 OK OK 3098 3116 3101 3102 3131 C3' C B 72 OK OK 3129 3147 3132 3133 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 875 C4' G B 1 OK OK 877 895 874 876 910 C4' G B 2 OK OK 912 930 909 911 944 C4' C B 3 OK OK 946 961 943 945 975 C4' U B 4 OK OK 977 992 974 976 1005 C4' C B 5 OK OK 1007 1022 1004 1006 1036 C4' G B 6 OK OK 1038 1056 1035 1037 1070 C4' U B 7 OK OK 1072 1087 1069 1071 1100 C4' U B 8 OK OK 1102 1117 1099 1101 1130 C4' G B 9 OK OK 1132 1150 1129 1131 1164 C4' G B 10 OK OK 1166 1184 1163 1165 1198 C4' U B 11 OK OK 1200 1215 1197 1199 1228 C4' C B 12 OK OK 1230 1245 1227 1229 1259 C4' U B 13 OK OK 1261 1276 1258 1260 1289 C4' A B 14 OK OK 1291 1308 1288 1290 1322 C4' G B 15 OK OK 1324 1342 1321 1323 1356 C4' G B 16 OK OK 1358 1376 1355 1357 1390 C4' G B 18 OK OK 1392 1410 1389 1391 1424 C4' G B 19 OK OK 1426 1444 1423 1425 1458 C4' U B 20 OK OK 1460 1475 1457 1459 1488 C4' A B 21 OK OK 1490 1507 1487 1489 1521 C4' U B 22 OK OK 1523 1538 1520 1522 1551 C4' G B 23 OK OK 1553 1571 1550 1552 1585 C4' A B 24 OK OK 1587 1604 1584 1586 1618 C4' U B 25 OK OK 1620 1635 1617 1619 1648 C4' U B 26 OK OK 1650 1665 1647 1649 1678 C4' C B 27 OK OK 1680 1695 1677 1679 1709 C4' U B 28 OK OK 1711 1726 1708 1710 1739 C4' C B 29 OK OK 1741 1756 1738 1740 1770 C4' G B 30 OK OK 1772 1790 1769 1771 1804 C4' C B 31 OK OK 1806 1821 1803 1805 1835 C4' U B 32 OK OK 1837 1852 1834 1836 1865 C4' U B 33 OK OK 1867 1882 1864 1866 1895 C4' A B 34 OK OK 1897 1914 1894 1896 1928 C4' G B 35 OK OK 1930 1948 1927 1929 1962 C4' G B 36 OK OK 1964 1982 1961 1963 1996 C4' G B 37 OK OK 1998 2016 1995 1997 2030 C4' U B 38 OK OK 2032 2047 2029 2031 2060 C4' G B 39 OK OK 2062 2080 2059 2061 2094 C4' C B 40 OK OK 2096 2111 2093 2095 2125 C4' G B 41 OK OK 2127 2145 2124 2126 2159 C4' A B 42 OK OK 2161 2178 2158 2160 2192 C4' G B 43 OK OK 2194 2212 2191 2193 2226 C4' A B 44 OK OK 2228 2245 2225 2227 2259 C4' G B 45 OK OK 2261 2279 2258 2260 2293 C4' G B 46 OK OK 2295 2313 2292 2294 2327 C4' U B 47 OK OK 2329 2344 2326 2328 2357 C4' C B 48 OK OK 2359 2374 2356 2358 2388 C4' C B 49 OK OK 2390 2405 2387 2389 2419 C4' C B 50 OK OK 2421 2436 2418 2420 2450 C4' G B 51 OK OK 2452 2470 2449 2451 2484 C4' G B 52 OK OK 2486 2504 2483 2485 2518 C4' G B 53 OK OK 2520 2538 2517 2519 2552 C4' U B 54 OK OK 2554 2569 2551 2553 2582 C4' U B 55 OK OK 2584 2599 2581 2583 2612 C4' C B 56 OK OK 2614 2629 2611 2613 2643 C4' A B 57 OK OK 2645 2662 2642 2644 2676 C4' A B 58 OK OK 2678 2695 2675 2677 2709 C4' A B 59 OK OK 2711 2728 2708 2710 2742 C4' U B 60 OK OK 2744 2759 2741 2743 2772 C4' C B 61 OK OK 2774 2789 2771 2773 2803 C4' C B 62 OK OK 2805 2820 2802 2804 2834 C4' C B 63 OK OK 2836 2851 2833 2835 2865 C4' G B 64 OK OK 2867 2885 2864 2866 2899 C4' G B 65 OK OK 2901 2919 2898 2900 2933 C4' A B 66 OK OK 2935 2952 2932 2934 2966 C4' C B 67 OK OK 2968 2983 2965 2967 2997 C4' G B 68 OK OK 2999 3017 2996 2998 3031 C4' A B 69 OK OK 3033 3050 3030 3032 3064 C4' G B 70 OK OK 3066 3084 3063 3065 3098 C4' C B 71 OK OK 3100 3115 3097 3099 3129 C4' C B 72 OK OK 3131 3146 3128 3130 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 874 C5' G B 1 OK OK 873 893 894 875 909 C5' G B 2 OK OK 908 928 929 910 943 C5' C B 3 OK OK 942 959 960 944 974 C5' U B 4 OK OK 973 990 991 975 1004 C5' C B 5 OK OK 1003 1020 1021 1005 1035 C5' G B 6 OK OK 1034 1054 1055 1036 1069 C5' U B 7 OK OK 1068 1085 1086 1070 1099 C5' U B 8 OK OK 1098 1115 1116 1100 1129 C5' G B 9 OK OK 1128 1148 1149 1130 1163 C5' G B 10 OK OK 1162 1182 1183 1164 1197 C5' U B 11 OK OK 1196 1213 1214 1198 1227 C5' C B 12 OK OK 1226 1243 1244 1228 1258 C5' U B 13 OK OK 1257 1274 1275 1259 1288 C5' A B 14 OK OK 1287 1306 1307 1289 1321 C5' G B 15 OK OK 1320 1340 1341 1322 1355 C5' G B 16 OK OK 1354 1374 1375 1356 1389 C5' G B 18 OK OK 1388 1408 1409 1390 1423 C5' G B 19 OK OK 1422 1442 1443 1424 1457 C5' U B 20 OK OK 1456 1473 1474 1458 1487 C5' A B 21 OK OK 1486 1505 1506 1488 1520 C5' U B 22 OK OK 1519 1536 1537 1521 1550 C5' G B 23 OK OK 1549 1569 1570 1551 1584 C5' A B 24 OK OK 1583 1602 1603 1585 1617 C5' U B 25 OK OK 1616 1633 1634 1618 1647 C5' U B 26 OK OK 1646 1663 1664 1648 1677 C5' C B 27 OK OK 1676 1693 1694 1678 1708 C5' U B 28 OK OK 1707 1724 1725 1709 1738 C5' C B 29 OK OK 1737 1754 1755 1739 1769 C5' G B 30 OK OK 1768 1788 1789 1770 1803 C5' C B 31 OK OK 1802 1819 1820 1804 1834 C5' U B 32 OK OK 1833 1850 1851 1835 1864 C5' U B 33 OK OK 1863 1880 1881 1865 1894 C5' A B 34 OK OK 1893 1912 1913 1895 1927 C5' G B 35 OK OK 1926 1946 1947 1928 1961 C5' G B 36 OK OK 1960 1980 1981 1962 1995 C5' G B 37 OK OK 1994 2014 2015 1996 2029 C5' U B 38 OK OK 2028 2045 2046 2030 2059 C5' G B 39 OK OK 2058 2078 2079 2060 2093 C5' C B 40 OK OK 2092 2109 2110 2094 2124 C5' G B 41 OK OK 2123 2143 2144 2125 2158 C5' A B 42 OK OK 2157 2176 2177 2159 2191 C5' G B 43 OK OK 2190 2210 2211 2192 2225 C5' A B 44 OK OK 2224 2243 2244 2226 2258 C5' G B 45 OK OK 2257 2277 2278 2259 2292 C5' G B 46 OK OK 2291 2311 2312 2293 2326 C5' U B 47 OK OK 2325 2342 2343 2327 2356 C5' C B 48 OK OK 2355 2372 2373 2357 2387 C5' C B 49 OK OK 2386 2403 2404 2388 2418 C5' C B 50 OK OK 2417 2434 2435 2419 2449 C5' G B 51 OK OK 2448 2468 2469 2450 2483 C5' G B 52 OK OK 2482 2502 2503 2484 2517 C5' G B 53 OK OK 2516 2536 2537 2518 2551 C5' U B 54 OK OK 2550 2567 2568 2552 2581 C5' U B 55 OK OK 2580 2597 2598 2582 2611 C5' C B 56 OK OK 2610 2627 2628 2612 2642 C5' A B 57 OK OK 2641 2660 2661 2643 2675 C5' A B 58 OK OK 2674 2693 2694 2676 2708 C5' A B 59 OK OK 2707 2726 2727 2709 2741 C5' U B 60 OK OK 2740 2757 2758 2742 2771 C5' C B 61 OK OK 2770 2787 2788 2772 2802 C5' C B 62 OK OK 2801 2818 2819 2803 2833 C5' C B 63 OK OK 2832 2849 2850 2834 2864 C5' G B 64 OK OK 2863 2883 2884 2865 2898 C5' G B 65 OK OK 2897 2917 2918 2899 2932 C5' A B 66 OK OK 2931 2950 2951 2933 2965 C5' C B 67 OK OK 2964 2981 2982 2966 2996 C5' G B 68 OK OK 2995 3015 3016 2997 3030 C5' A B 69 OK OK 3029 3048 3049 3031 3063 C5' G B 70 OK OK 3062 3082 3083 3064 3097 C5' C B 71 OK OK 3096 3113 3114 3098 3128 C5' C B 72 OK OK 3127 3144 3145 3129 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 905 P G B 2 distorted distorted 878 906 907 908 939 P C B 3 distorted distorted 913 940 941 942 970 P U B 4 distorted distorted 947 971 972 973 1000 P C B 5 distorted distorted 978 1001 1002 1003 1031 P G B 6 distorted distorted 1008 1032 1033 1034 1065 P U B 7 distorted distorted 1039 1066 1067 1068 1095 P U B 8 distorted distorted 1073 1096 1097 1098 1125 P G B 9 distorted distorted 1103 1126 1127 1128 1159 P G B 10 distorted distorted 1133 1160 1161 1162 1193 P U B 11 distorted distorted 1167 1194 1195 1196 1223 P C B 12 distorted distorted 1201 1224 1225 1226 1254 P U B 13 distorted distorted 1231 1255 1256 1257 1284 P A B 14 distorted distorted 1262 1285 1286 1287 1317 P G B 15 distorted distorted 1292 1318 1319 1320 1351 P G B 16 distorted distorted 1325 1352 1353 1354 1385 P G B 18 distorted distorted 1359 1386 1387 1388 1419 P G B 19 distorted distorted 1393 1420 1421 1422 1453 P U B 20 distorted distorted 1427 1454 1455 1456 1483 P A B 21 distorted distorted 1461 1484 1485 1486 1516 P U B 22 distorted distorted 1491 1517 1518 1519 1546 P G B 23 distorted distorted 1524 1547 1548 1549 1580 P A B 24 distorted distorted 1554 1581 1582 1583 1613 P U B 25 distorted distorted 1588 1614 1615 1616 1643 P U B 26 distorted distorted 1621 1644 1645 1646 1673 P C B 27 distorted distorted 1651 1674 1675 1676 1704 P U B 28 distorted distorted 1681 1705 1706 1707 1734 P C B 29 distorted distorted 1712 1735 1736 1737 1765 P G B 30 distorted distorted 1742 1766 1767 1768 1799 P C B 31 distorted distorted 1773 1800 1801 1802 1830 P U B 32 distorted distorted 1807 1831 1832 1833 1860 P U B 33 distorted distorted 1838 1861 1862 1863 1890 P A B 34 distorted distorted 1868 1891 1892 1893 1923 P G B 35 distorted distorted 1898 1924 1925 1926 1957 P G B 36 distorted distorted 1931 1958 1959 1960 1991 P G B 37 distorted distorted 1965 1992 1993 1994 2025 P U B 38 distorted distorted 1999 2026 2027 2028 2055 P G B 39 distorted distorted 2033 2056 2057 2058 2089 P C B 40 distorted distorted 2063 2090 2091 2092 2120 P G B 41 distorted distorted 2097 2121 2122 2123 2154 P A B 42 distorted distorted 2128 2155 2156 2157 2187 P G B 43 distorted distorted 2162 2188 2189 2190 2221 P A B 44 distorted distorted 2195 2222 2223 2224 2254 P G B 45 distorted distorted 2229 2255 2256 2257 2288 P G B 46 distorted distorted 2262 2289 2290 2291 2322 P U B 47 distorted distorted 2296 2323 2324 2325 2352 P C B 48 distorted distorted 2330 2353 2354 2355 2383 P C B 49 distorted distorted 2360 2384 2385 2386 2414 P C B 50 distorted distorted 2391 2415 2416 2417 2445 P G B 51 distorted distorted 2422 2446 2447 2448 2479 P G B 52 distorted distorted 2453 2480 2481 2482 2513 P G B 53 distorted distorted 2487 2514 2515 2516 2547 P U B 54 distorted distorted 2521 2548 2549 2550 2577 P U B 55 distorted distorted 2555 2578 2579 2580 2607 P C B 56 distorted distorted 2585 2608 2609 2610 2638 P A B 57 distorted distorted 2615 2639 2640 2641 2671 P A B 58 distorted distorted 2646 2672 2673 2674 2704 P A B 59 distorted distorted 2679 2705 2706 2707 2737 P U B 60 distorted distorted 2712 2738 2739 2740 2767 P C B 61 distorted distorted 2745 2768 2769 2770 2798 P C B 62 distorted distorted 2775 2799 2800 2801 2829 P C B 63 distorted distorted 2806 2830 2831 2832 2860 P G B 64 distorted distorted 2837 2861 2862 2863 2894 P G B 65 distorted distorted 2868 2895 2896 2897 2928 P A B 66 distorted distorted 2902 2929 2930 2931 2961 P C B 67 distorted distorted 2936 2962 2963 2964 2992 P G B 68 distorted distorted 2969 2993 2994 2995 3026 P A B 69 distorted distorted 3000 3027 3028 3029 3059 P G B 70 distorted distorted 3034 3060 3061 3062 3093 P C B 71 distorted distorted 3067 3094 3095 3096 3124 P C B 72 distorted distorted 3101 3125 3126 3127 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