ID code: '2MF0' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 5535 C1' U G 1 alpha beta 5530 5550 5536 5533 5566 C1' G G 2 alpha beta 5561 5584 5567 5564 5600 C1' U G 3 alpha beta 5595 5615 5601 5598 5630 C1' C G 4 alpha beta 5625 5645 5631 5628 5661 C1' G G 5 alpha beta 5656 5679 5662 5659 5695 C1' A G 6 alpha beta 5690 5712 5696 5693 5728 C1' C G 7 alpha beta 5723 5743 5729 5726 5759 C1' G G 8 alpha beta 5754 5777 5760 5757 5793 C1' G G 9 alpha beta 5788 5811 5794 5791 5827 C1' A G 10 alpha beta 5822 5844 5828 5825 5860 C1' U G 11 alpha beta 5855 5875 5861 5858 5890 C1' A G 12 alpha beta 5885 5907 5891 5888 5923 C1' G G 13 alpha beta 5918 5941 5924 5921 5957 C1' A G 14 alpha beta 5952 5974 5958 5955 5990 C1' C G 15 alpha beta 5985 6005 5991 5988 6021 C1' A G 16 alpha beta 6016 6038 6022 6019 6054 C1' C G 17 alpha beta 6049 6069 6055 6052 6085 C1' A G 18 alpha beta 6080 6102 6086 6083 6118 C1' G G 19 alpha beta 6113 6136 6119 6116 6152 C1' C G 20 alpha beta 6147 6167 6153 6150 6183 C1' C G 21 alpha beta 6178 6198 6184 6181 6214 C1' A G 22 alpha beta 6209 6231 6215 6212 6247 C1' U G 23 alpha beta 6242 6262 6248 6245 6277 C1' C G 24 alpha beta 6272 6292 6278 6275 6308 C1' A G 25 alpha beta 6303 6325 6309 6306 6341 C1' A G 26 alpha beta 6336 6358 6342 6339 6374 C1' G G 27 alpha beta 6369 6392 6375 6372 6408 C1' G G 28 alpha beta 6403 6426 6409 6406 6442 C1' A G 29 alpha beta 6437 6459 6443 6440 6475 C1' C G 30 alpha beta 6470 6490 6476 6473 6506 C1' G G 31 alpha beta 6501 6524 6507 6504 6540 C1' A G 32 alpha beta 6535 6557 6541 6538 6573 C1' U G 33 alpha beta 6568 6588 6574 6571 6603 C1' G G 34 alpha beta 6598 6621 6604 6601 6637 C1' G G 35 alpha beta 6632 6655 6638 6635 6671 C1' U G 36 alpha beta 6666 6686 6672 6669 6701 C1' C G 37 alpha beta 6696 6716 6702 6699 6732 C1' A G 38 alpha beta 6727 6749 6733 6730 6765 C1' G G 39 alpha beta 6760 6783 6766 6763 6799 C1' G G 40 alpha beta 6794 6817 6800 6797 6833 C1' A G 41 alpha beta 6828 6850 6834 6831 6866 C1' C G 42 alpha beta 6861 6881 6867 6864 6897 C1' A G 43 alpha beta 6892 6914 6898 6895 6930 C1' U G 44 alpha beta 6925 6945 6931 6928 6960 C1' C G 45 alpha beta 6955 6975 6961 6958 6991 C1' G G 46 alpha beta 6986 7009 6992 6989 7025 C1' C G 47 alpha beta 7020 7040 7026 7023 7056 C1' A G 48 alpha beta 7051 7073 7057 7054 7089 C1' G G 49 alpha beta 7084 7107 7090 7087 7123 C1' G G 50 alpha beta 7118 7141 7124 7121 7157 C1' A G 51 alpha beta 7152 7174 7158 7155 7190 C1' A G 52 alpha beta 7185 7207 7191 7188 7223 C1' G G 53 alpha beta 7218 7241 7224 7221 7257 C1' C G 54 alpha beta 7252 7272 7258 7255 7288 C1' G G 55 alpha beta 7283 7306 7289 7286 7322 C1' A G 56 alpha beta 7317 7339 7323 7320 7355 C1' U G 57 alpha beta 7350 7370 7356 7353 7385 C1' U G 58 alpha beta 7380 7400 7386 7383 7415 C1' C G 59 alpha beta 7410 7430 7416 7413 7446 C1' A G 60 alpha beta 7441 7463 7447 7444 7479 C1' U G 61 alpha beta 7474 7494 7480 7477 7509 C1' C G 62 alpha beta 7504 7524 7510 7507 7540 C1' A G 63 alpha beta 7535 7557 7541 7538 7573 C1' G G 64 alpha beta 7568 7591 7574 7571 7607 C1' G G 65 alpha beta 7602 7625 7608 7605 7641 C1' A G 66 alpha beta 7636 7658 7642 7639 7674 C1' C G 67 alpha beta 7669 7689 7675 7672 7705 C1' G G 68 alpha beta 7700 7723 7706 7703 7739 C1' A G 69 alpha beta 7734 7756 7740 7737 7772 C1' U G 70 alpha beta 7767 7787 7773 7770 7802 C1' G G 71 alpha beta 7797 7820 7803 7800 7836 C1' A G 72 alpha beta 7831 7854 7837 7834 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 5533 C2' U G 1 OK OK 5535 5531 5548 5534 5564 C2' G G 2 OK OK 5566 5562 5582 5565 5598 C2' U G 3 OK OK 5600 5596 5613 5599 5628 C2' C G 4 OK OK 5630 5626 5643 5629 5659 C2' G G 5 OK OK 5661 5657 5677 5660 5693 C2' A G 6 OK OK 5695 5691 5710 5694 5726 C2' C G 7 OK OK 5728 5724 5741 5727 5757 C2' G G 8 OK OK 5759 5755 5775 5758 5791 C2' G G 9 OK OK 5793 5789 5809 5792 5825 C2' A G 10 OK OK 5827 5823 5842 5826 5858 C2' U G 11 OK OK 5860 5856 5873 5859 5888 C2' A G 12 OK OK 5890 5886 5905 5889 5921 C2' G G 13 OK OK 5923 5919 5939 5922 5955 C2' A G 14 OK OK 5957 5953 5972 5956 5988 C2' C G 15 OK OK 5990 5986 6003 5989 6019 C2' A G 16 OK OK 6021 6017 6036 6020 6052 C2' C G 17 OK OK 6054 6050 6067 6053 6083 C2' A G 18 OK OK 6085 6081 6100 6084 6116 C2' G G 19 OK OK 6118 6114 6134 6117 6150 C2' C G 20 OK OK 6152 6148 6165 6151 6181 C2' C G 21 OK OK 6183 6179 6196 6182 6212 C2' A G 22 OK OK 6214 6210 6229 6213 6245 C2' U G 23 OK OK 6247 6243 6260 6246 6275 C2' C G 24 OK OK 6277 6273 6290 6276 6306 C2' A G 25 OK OK 6308 6304 6323 6307 6339 C2' A G 26 OK OK 6341 6337 6356 6340 6372 C2' G G 27 OK OK 6374 6370 6390 6373 6406 C2' G G 28 OK OK 6408 6404 6424 6407 6440 C2' A G 29 OK OK 6442 6438 6457 6441 6473 C2' C G 30 OK OK 6475 6471 6488 6474 6504 C2' G G 31 OK OK 6506 6502 6522 6505 6538 C2' A G 32 OK OK 6540 6536 6555 6539 6571 C2' U G 33 OK OK 6573 6569 6586 6572 6601 C2' G G 34 OK OK 6603 6599 6619 6602 6635 C2' G G 35 OK OK 6637 6633 6653 6636 6669 C2' U G 36 OK OK 6671 6667 6684 6670 6699 C2' C G 37 OK OK 6701 6697 6714 6700 6730 C2' A G 38 OK OK 6732 6728 6747 6731 6763 C2' G G 39 OK OK 6765 6761 6781 6764 6797 C2' G G 40 OK OK 6799 6795 6815 6798 6831 C2' A G 41 OK OK 6833 6829 6848 6832 6864 C2' C G 42 OK OK 6866 6862 6879 6865 6895 C2' A G 43 OK OK 6897 6893 6912 6896 6928 C2' U G 44 OK OK 6930 6926 6943 6929 6958 C2' C G 45 OK OK 6960 6956 6973 6959 6989 C2' G G 46 OK OK 6991 6987 7007 6990 7023 C2' C G 47 OK OK 7025 7021 7038 7024 7054 C2' A G 48 OK OK 7056 7052 7071 7055 7087 C2' G G 49 OK OK 7089 7085 7105 7088 7121 C2' G G 50 OK OK 7123 7119 7139 7122 7155 C2' A G 51 OK OK 7157 7153 7172 7156 7188 C2' A G 52 OK OK 7190 7186 7205 7189 7221 C2' G G 53 OK OK 7223 7219 7239 7222 7255 C2' C G 54 OK OK 7257 7253 7270 7256 7286 C2' G G 55 OK OK 7288 7284 7304 7287 7320 C2' A G 56 OK OK 7322 7318 7337 7321 7353 C2' U G 57 OK OK 7355 7351 7368 7354 7383 C2' U G 58 OK OK 7385 7381 7398 7384 7413 C2' C G 59 OK OK 7415 7411 7428 7414 7444 C2' A G 60 OK OK 7446 7442 7461 7445 7477 C2' U G 61 OK OK 7479 7475 7492 7478 7507 C2' C G 62 OK OK 7509 7505 7522 7508 7538 C2' A G 63 OK OK 7540 7536 7555 7539 7571 C2' G G 64 OK OK 7573 7569 7589 7572 7605 C2' G G 65 OK OK 7607 7603 7623 7606 7639 C2' A G 66 OK OK 7641 7637 7656 7640 7672 C2' C G 67 OK OK 7674 7670 7687 7673 7703 C2' G G 68 OK OK 7705 7701 7721 7704 7737 C2' A G 69 OK OK 7739 7735 7754 7738 7770 C2' U G 70 OK OK 7772 7768 7785 7771 7800 C2' G G 71 OK OK 7802 7798 7818 7801 7834 C2' A G 72 OK OK 7836 7832 7852 7835 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5531 C3' U G 1 OK OK 5529 5547 5532 5533 5562 C3' G G 2 OK OK 5560 5581 5563 5564 5596 C3' U G 3 OK OK 5594 5612 5597 5598 5626 C3' C G 4 OK OK 5624 5642 5627 5628 5657 C3' G G 5 OK OK 5655 5676 5658 5659 5691 C3' A G 6 OK OK 5689 5709 5692 5693 5724 C3' C G 7 OK OK 5722 5740 5725 5726 5755 C3' G G 8 OK OK 5753 5774 5756 5757 5789 C3' G G 9 OK OK 5787 5808 5790 5791 5823 C3' A G 10 OK OK 5821 5841 5824 5825 5856 C3' U G 11 OK OK 5854 5872 5857 5858 5886 C3' A G 12 OK OK 5884 5904 5887 5888 5919 C3' G G 13 OK OK 5917 5938 5920 5921 5953 C3' A G 14 OK OK 5951 5971 5954 5955 5986 C3' C G 15 OK OK 5984 6002 5987 5988 6017 C3' A G 16 OK OK 6015 6035 6018 6019 6050 C3' C G 17 OK OK 6048 6066 6051 6052 6081 C3' A G 18 OK OK 6079 6099 6082 6083 6114 C3' G G 19 OK OK 6112 6133 6115 6116 6148 C3' C G 20 OK OK 6146 6164 6149 6150 6179 C3' C G 21 OK OK 6177 6195 6180 6181 6210 C3' A G 22 OK OK 6208 6228 6211 6212 6243 C3' U G 23 OK OK 6241 6259 6244 6245 6273 C3' C G 24 OK OK 6271 6289 6274 6275 6304 C3' A G 25 OK OK 6302 6322 6305 6306 6337 C3' A G 26 OK OK 6335 6355 6338 6339 6370 C3' G G 27 OK OK 6368 6389 6371 6372 6404 C3' G G 28 OK OK 6402 6423 6405 6406 6438 C3' A G 29 OK OK 6436 6456 6439 6440 6471 C3' C G 30 OK OK 6469 6487 6472 6473 6502 C3' G G 31 OK OK 6500 6521 6503 6504 6536 C3' A G 32 OK OK 6534 6554 6537 6538 6569 C3' U G 33 OK OK 6567 6585 6570 6571 6599 C3' G G 34 OK OK 6597 6618 6600 6601 6633 C3' G G 35 OK OK 6631 6652 6634 6635 6667 C3' U G 36 OK OK 6665 6683 6668 6669 6697 C3' C G 37 OK OK 6695 6713 6698 6699 6728 C3' A G 38 OK OK 6726 6746 6729 6730 6761 C3' G G 39 OK OK 6759 6780 6762 6763 6795 C3' G G 40 OK OK 6793 6814 6796 6797 6829 C3' A G 41 OK OK 6827 6847 6830 6831 6862 C3' C G 42 OK OK 6860 6878 6863 6864 6893 C3' A G 43 OK OK 6891 6911 6894 6895 6926 C3' U G 44 OK OK 6924 6942 6927 6928 6956 C3' C G 45 OK OK 6954 6972 6957 6958 6987 C3' G G 46 OK OK 6985 7006 6988 6989 7021 C3' C G 47 OK OK 7019 7037 7022 7023 7052 C3' A G 48 OK OK 7050 7070 7053 7054 7085 C3' G G 49 OK OK 7083 7104 7086 7087 7119 C3' G G 50 OK OK 7117 7138 7120 7121 7153 C3' A G 51 OK OK 7151 7171 7154 7155 7186 C3' A G 52 OK OK 7184 7204 7187 7188 7219 C3' G G 53 OK OK 7217 7238 7220 7221 7253 C3' C G 54 OK OK 7251 7269 7254 7255 7284 C3' G G 55 OK OK 7282 7303 7285 7286 7318 C3' A G 56 OK OK 7316 7336 7319 7320 7351 C3' U G 57 OK OK 7349 7367 7352 7353 7381 C3' U G 58 OK OK 7379 7397 7382 7383 7411 C3' C G 59 OK OK 7409 7427 7412 7413 7442 C3' A G 60 OK OK 7440 7460 7443 7444 7475 C3' U G 61 OK OK 7473 7491 7476 7477 7505 C3' C G 62 OK OK 7503 7521 7506 7507 7536 C3' A G 63 OK OK 7534 7554 7537 7538 7569 C3' G G 64 OK OK 7567 7588 7570 7571 7603 C3' G G 65 OK OK 7601 7622 7604 7605 7637 C3' A G 66 OK OK 7635 7655 7638 7639 7670 C3' C G 67 OK OK 7668 7686 7671 7672 7701 C3' G G 68 OK OK 7699 7720 7702 7703 7735 C3' A G 69 OK OK 7733 7753 7736 7737 7768 C3' U G 70 OK OK 7766 7784 7769 7770 7798 C3' G G 71 OK OK 7796 7817 7799 7800 7832 C3' A G 72 OK OK 7830 7850 7833 7834 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 5529 C4' U G 1 OK OK 5531 5546 5528 5530 5560 C4' G G 2 OK OK 5562 5580 5559 5561 5594 C4' U G 3 OK OK 5596 5611 5593 5595 5624 C4' C G 4 OK OK 5626 5641 5623 5625 5655 C4' G G 5 OK OK 5657 5675 5654 5656 5689 C4' A G 6 OK OK 5691 5708 5688 5690 5722 C4' C G 7 OK OK 5724 5739 5721 5723 5753 C4' G G 8 OK OK 5755 5773 5752 5754 5787 C4' G G 9 OK OK 5789 5807 5786 5788 5821 C4' A G 10 OK OK 5823 5840 5820 5822 5854 C4' U G 11 OK OK 5856 5871 5853 5855 5884 C4' A G 12 OK OK 5886 5903 5883 5885 5917 C4' G G 13 OK OK 5919 5937 5916 5918 5951 C4' A G 14 OK OK 5953 5970 5950 5952 5984 C4' C G 15 OK OK 5986 6001 5983 5985 6015 C4' A G 16 OK OK 6017 6034 6014 6016 6048 C4' C G 17 OK OK 6050 6065 6047 6049 6079 C4' A G 18 OK OK 6081 6098 6078 6080 6112 C4' G G 19 OK OK 6114 6132 6111 6113 6146 C4' C G 20 OK OK 6148 6163 6145 6147 6177 C4' C G 21 OK OK 6179 6194 6176 6178 6208 C4' A G 22 OK OK 6210 6227 6207 6209 6241 C4' U G 23 OK OK 6243 6258 6240 6242 6271 C4' C G 24 OK OK 6273 6288 6270 6272 6302 C4' A G 25 OK OK 6304 6321 6301 6303 6335 C4' A G 26 OK OK 6337 6354 6334 6336 6368 C4' G G 27 OK OK 6370 6388 6367 6369 6402 C4' G G 28 OK OK 6404 6422 6401 6403 6436 C4' A G 29 OK OK 6438 6455 6435 6437 6469 C4' C G 30 OK OK 6471 6486 6468 6470 6500 C4' G G 31 OK OK 6502 6520 6499 6501 6534 C4' A G 32 OK OK 6536 6553 6533 6535 6567 C4' U G 33 OK OK 6569 6584 6566 6568 6597 C4' G G 34 OK OK 6599 6617 6596 6598 6631 C4' G G 35 OK OK 6633 6651 6630 6632 6665 C4' U G 36 OK OK 6667 6682 6664 6666 6695 C4' C G 37 OK OK 6697 6712 6694 6696 6726 C4' A G 38 OK OK 6728 6745 6725 6727 6759 C4' G G 39 OK OK 6761 6779 6758 6760 6793 C4' G G 40 OK OK 6795 6813 6792 6794 6827 C4' A G 41 OK OK 6829 6846 6826 6828 6860 C4' C G 42 OK OK 6862 6877 6859 6861 6891 C4' A G 43 OK OK 6893 6910 6890 6892 6924 C4' U G 44 OK OK 6926 6941 6923 6925 6954 C4' C G 45 OK OK 6956 6971 6953 6955 6985 C4' G G 46 OK OK 6987 7005 6984 6986 7019 C4' C G 47 OK OK 7021 7036 7018 7020 7050 C4' A G 48 OK OK 7052 7069 7049 7051 7083 C4' G G 49 OK OK 7085 7103 7082 7084 7117 C4' G G 50 OK OK 7119 7137 7116 7118 7151 C4' A G 51 OK OK 7153 7170 7150 7152 7184 C4' A G 52 OK OK 7186 7203 7183 7185 7217 C4' G G 53 OK OK 7219 7237 7216 7218 7251 C4' C G 54 OK OK 7253 7268 7250 7252 7282 C4' G G 55 OK OK 7284 7302 7281 7283 7316 C4' A G 56 OK OK 7318 7335 7315 7317 7349 C4' U G 57 OK OK 7351 7366 7348 7350 7379 C4' U G 58 OK OK 7381 7396 7378 7380 7409 C4' C G 59 OK OK 7411 7426 7408 7410 7440 C4' A G 60 OK OK 7442 7459 7439 7441 7473 C4' U G 61 OK OK 7475 7490 7472 7474 7503 C4' C G 62 OK OK 7505 7520 7502 7504 7534 C4' A G 63 OK OK 7536 7553 7533 7535 7567 C4' G G 64 OK OK 7569 7587 7566 7568 7601 C4' G G 65 OK OK 7603 7621 7600 7602 7635 C4' A G 66 OK OK 7637 7654 7634 7636 7668 C4' C G 67 OK OK 7670 7685 7667 7669 7699 C4' G G 68 OK OK 7701 7719 7698 7700 7733 C4' A G 69 OK OK 7735 7752 7732 7734 7766 C4' U G 70 OK OK 7768 7783 7765 7767 7796 C4' G G 71 OK OK 7798 7816 7795 7797 7830 C4' A G 72 OK OK 7832 7849 7829 7831 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5528 C5' U G 1 OK OK 5527 5544 5545 5529 5559 C5' G G 2 OK OK 5558 5578 5579 5560 5593 C5' U G 3 OK OK 5592 5609 5610 5594 5623 C5' C G 4 OK OK 5622 5639 5640 5624 5654 C5' G G 5 OK OK 5653 5673 5674 5655 5688 C5' A G 6 OK OK 5687 5706 5707 5689 5721 C5' C G 7 OK OK 5720 5737 5738 5722 5752 C5' G G 8 OK OK 5751 5771 5772 5753 5786 C5' G G 9 OK OK 5785 5805 5806 5787 5820 C5' A G 10 OK OK 5819 5838 5839 5821 5853 C5' U G 11 OK OK 5852 5869 5870 5854 5883 C5' A G 12 OK OK 5882 5901 5902 5884 5916 C5' G G 13 OK OK 5915 5935 5936 5917 5950 C5' A G 14 OK OK 5949 5968 5969 5951 5983 C5' C G 15 OK OK 5982 5999 6000 5984 6014 C5' A G 16 OK OK 6013 6032 6033 6015 6047 C5' C G 17 OK OK 6046 6063 6064 6048 6078 C5' A G 18 OK OK 6077 6096 6097 6079 6111 C5' G G 19 OK OK 6110 6130 6131 6112 6145 C5' C G 20 OK OK 6144 6161 6162 6146 6176 C5' C G 21 OK OK 6175 6192 6193 6177 6207 C5' A G 22 OK OK 6206 6225 6226 6208 6240 C5' U G 23 OK OK 6239 6256 6257 6241 6270 C5' C G 24 OK OK 6269 6286 6287 6271 6301 C5' A G 25 OK OK 6300 6319 6320 6302 6334 C5' A G 26 OK OK 6333 6352 6353 6335 6367 C5' G G 27 OK OK 6366 6386 6387 6368 6401 C5' G G 28 OK OK 6400 6420 6421 6402 6435 C5' A G 29 OK OK 6434 6453 6454 6436 6468 C5' C G 30 OK OK 6467 6484 6485 6469 6499 C5' G G 31 OK OK 6498 6518 6519 6500 6533 C5' A G 32 OK OK 6532 6551 6552 6534 6566 C5' U G 33 OK OK 6565 6582 6583 6567 6596 C5' G G 34 OK OK 6595 6615 6616 6597 6630 C5' G G 35 OK OK 6629 6649 6650 6631 6664 C5' U G 36 OK OK 6663 6680 6681 6665 6694 C5' C G 37 OK OK 6693 6710 6711 6695 6725 C5' A G 38 OK OK 6724 6743 6744 6726 6758 C5' G G 39 OK OK 6757 6777 6778 6759 6792 C5' G G 40 OK OK 6791 6811 6812 6793 6826 C5' A G 41 OK OK 6825 6844 6845 6827 6859 C5' C G 42 OK OK 6858 6875 6876 6860 6890 C5' A G 43 OK OK 6889 6908 6909 6891 6923 C5' U G 44 OK OK 6922 6939 6940 6924 6953 C5' C G 45 OK OK 6952 6969 6970 6954 6984 C5' G G 46 OK OK 6983 7003 7004 6985 7018 C5' C G 47 OK OK 7017 7034 7035 7019 7049 C5' A G 48 OK OK 7048 7067 7068 7050 7082 C5' G G 49 OK OK 7081 7101 7102 7083 7116 C5' G G 50 OK OK 7115 7135 7136 7117 7150 C5' A G 51 OK OK 7149 7168 7169 7151 7183 C5' A G 52 OK OK 7182 7201 7202 7184 7216 C5' G G 53 OK OK 7215 7235 7236 7217 7250 C5' C G 54 OK OK 7249 7266 7267 7251 7281 C5' G G 55 OK OK 7280 7300 7301 7282 7315 C5' A G 56 OK OK 7314 7333 7334 7316 7348 C5' U G 57 OK OK 7347 7364 7365 7349 7378 C5' U G 58 OK OK 7377 7394 7395 7379 7408 C5' C G 59 OK OK 7407 7424 7425 7409 7439 C5' A G 60 OK OK 7438 7457 7458 7440 7472 C5' U G 61 OK OK 7471 7488 7489 7473 7502 C5' C G 62 OK OK 7501 7518 7519 7503 7533 C5' A G 63 OK OK 7532 7551 7552 7534 7566 C5' G G 64 OK OK 7565 7585 7586 7567 7600 C5' G G 65 OK OK 7599 7619 7620 7601 7634 C5' A G 66 OK OK 7633 7652 7653 7635 7667 C5' C G 67 OK OK 7666 7683 7684 7668 7698 C5' G G 68 OK OK 7697 7717 7718 7699 7732 C5' A G 69 OK OK 7731 7750 7751 7733 7765 C5' U G 70 OK OK 7764 7781 7782 7766 7795 C5' G G 71 OK OK 7794 7814 7815 7796 7829 C5' A G 72 OK OK 7828 7847 7848 7830 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 5555 P G G 2 distorted distorted 5532 5556 5557 5558 5589 P U G 3 distorted distorted 5563 5590 5591 5592 5619 P C G 4 distorted distorted 5597 5620 5621 5622 5650 P G G 5 distorted distorted 5627 5651 5652 5653 5684 P A G 6 distorted distorted 5658 5685 5686 5687 5717 P C G 7 distorted distorted 5692 5718 5719 5720 5748 P G G 8 distorted distorted 5725 5749 5750 5751 5782 P G G 9 distorted distorted 5756 5783 5784 5785 5816 P A G 10 distorted distorted 5790 5817 5818 5819 5849 P U G 11 distorted distorted 5824 5850 5851 5852 5879 P A G 12 distorted distorted 5857 5880 5881 5882 5912 P G G 13 distorted distorted 5887 5913 5914 5915 5946 P A G 14 distorted distorted 5920 5947 5948 5949 5979 P C G 15 distorted distorted 5954 5980 5981 5982 6010 P A G 16 distorted distorted 5987 6011 6012 6013 6043 P C G 17 distorted distorted 6018 6044 6045 6046 6074 P A G 18 distorted distorted 6051 6075 6076 6077 6107 P G G 19 distorted distorted 6082 6108 6109 6110 6141 P C G 20 distorted distorted 6115 6142 6143 6144 6172 P C G 21 distorted distorted 6149 6173 6174 6175 6203 P A G 22 distorted distorted 6180 6204 6205 6206 6236 P U G 23 distorted distorted 6211 6237 6238 6239 6266 P C G 24 distorted distorted 6244 6267 6268 6269 6297 P A G 25 distorted distorted 6274 6298 6299 6300 6330 P A G 26 distorted distorted 6305 6331 6332 6333 6363 P G G 27 distorted distorted 6338 6364 6365 6366 6397 P G G 28 distorted distorted 6371 6398 6399 6400 6431 P A G 29 distorted distorted 6405 6432 6433 6434 6464 P C G 30 distorted distorted 6439 6465 6466 6467 6495 P G G 31 distorted distorted 6472 6496 6497 6498 6529 P A G 32 distorted distorted 6503 6530 6531 6532 6562 P U G 33 distorted distorted 6537 6563 6564 6565 6592 P G G 34 distorted distorted 6570 6593 6594 6595 6626 P G G 35 distorted distorted 6600 6627 6628 6629 6660 P U G 36 distorted distorted 6634 6661 6662 6663 6690 P C G 37 distorted distorted 6668 6691 6692 6693 6721 P A G 38 distorted distorted 6698 6722 6723 6724 6754 P G G 39 distorted distorted 6729 6755 6756 6757 6788 P G G 40 distorted distorted 6762 6789 6790 6791 6822 P A G 41 distorted distorted 6796 6823 6824 6825 6855 P C G 42 distorted distorted 6830 6856 6857 6858 6886 P A G 43 distorted distorted 6863 6887 6888 6889 6919 P U G 44 distorted distorted 6894 6920 6921 6922 6949 P C G 45 distorted distorted 6927 6950 6951 6952 6980 P G G 46 distorted distorted 6957 6981 6982 6983 7014 P C G 47 distorted distorted 6988 7015 7016 7017 7045 P A G 48 distorted distorted 7022 7046 7047 7048 7078 P G G 49 distorted distorted 7053 7079 7080 7081 7112 P G G 50 distorted distorted 7086 7113 7114 7115 7146 P A G 51 distorted distorted 7120 7147 7148 7149 7179 P A G 52 distorted distorted 7154 7180 7181 7182 7212 P G G 53 distorted distorted 7187 7213 7214 7215 7246 P C G 54 distorted distorted 7220 7247 7248 7249 7277 P G G 55 distorted distorted 7254 7278 7279 7280 7311 P A G 56 distorted distorted 7285 7312 7313 7314 7344 P U G 57 distorted distorted 7319 7345 7346 7347 7374 P U G 58 distorted distorted 7352 7375 7376 7377 7404 P C G 59 distorted distorted 7382 7405 7406 7407 7435 P A G 60 distorted distorted 7412 7436 7437 7438 7468 P U G 61 distorted distorted 7443 7469 7470 7471 7498 P C G 62 distorted distorted 7476 7499 7500 7501 7529 P A G 63 distorted distorted 7506 7530 7531 7532 7562 P G G 64 distorted distorted 7537 7563 7564 7565 7596 P G G 65 distorted distorted 7570 7597 7598 7599 7630 P A G 66 distorted distorted 7604 7631 7632 7633 7663 P C G 67 distorted distorted 7638 7664 7665 7666 7694 P G G 68 distorted distorted 7671 7695 7696 7697 7728 P A G 69 distorted distorted 7702 7729 7730 7731 7761 P U G 70 distorted distorted 7736 7762 7763 7764 7791 P G G 71 distorted distorted 7769 7792 7793 7794 7825 P A G 72 distorted distorted 7799 7826 7827 7828 ---------------------------------------------------------------------------------