ID code: '2LKR' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 1 alpha beta 4 27 10 7 43 C1' G A 2 alpha beta 38 61 44 41 77 C1' C A 3 alpha beta 72 92 78 75 108 C1' A A 4 alpha beta 103 125 109 106 141 C1' A A 5 alpha beta 136 158 142 139 174 C1' U A 6 alpha beta 169 189 175 172 204 C1' A A 7 alpha beta 199 221 205 202 237 C1' C A 8 alpha beta 232 252 238 235 268 C1' A A 9 alpha beta 263 285 269 266 301 C1' G A 10 alpha beta 296 319 302 299 335 C1' A A 11 alpha beta 330 352 336 333 368 C1' G A 12 alpha beta 363 386 369 366 402 C1' A A 13 alpha beta 397 419 403 400 435 C1' U A 14 alpha beta 430 450 436 433 465 C1' G A 15 alpha beta 460 483 466 463 499 C1' A A 16 alpha beta 494 516 500 497 532 C1' U A 17 alpha beta 527 547 533 530 562 C1' C A 18 alpha beta 557 577 563 560 593 C1' A A 19 alpha beta 588 610 594 591 626 C1' G A 20 alpha beta 621 644 627 624 660 C1' C A 21 alpha beta 655 675 661 658 691 C1' A A 22 alpha beta 686 708 692 689 724 C1' G A 23 alpha beta 719 742 725 722 758 C1' U A 24 alpha beta 753 773 759 756 788 C1' U A 25 alpha beta 783 803 789 786 818 C1' C A 26 alpha beta 813 833 819 816 849 C1' C A 27 alpha beta 844 864 850 847 880 C1' C A 28 alpha beta 875 895 881 878 911 C1' C A 29 alpha beta 906 926 912 909 942 C1' U A 30 alpha beta 937 957 943 940 972 C1' G A 31 alpha beta 967 990 973 970 1006 C1' C A 32 alpha beta 1001 1021 1007 1004 1037 C1' A A 33 alpha beta 1032 1054 1038 1035 1070 C1' U A 34 alpha beta 1065 1085 1071 1068 1100 C1' A A 35 alpha beta 1095 1117 1101 1098 1133 C1' A A 36 alpha beta 1128 1150 1134 1131 1166 C1' G A 37 alpha beta 1161 1184 1167 1164 1200 C1' G A 38 alpha beta 1195 1218 1201 1198 1234 C1' A A 39 alpha beta 1229 1251 1235 1232 1267 C1' U A 40 alpha beta 1262 1282 1268 1265 1297 C1' G A 41 alpha beta 1292 1315 1298 1295 1331 C1' A A 42 alpha beta 1326 1348 1332 1329 1364 C1' A A 43 alpha beta 1359 1381 1365 1362 1397 C1' C A 44 alpha beta 1392 1412 1398 1395 1428 C1' C A 45 alpha beta 1423 1443 1429 1426 1459 C1' G A 46 alpha beta 1454 1477 1460 1457 1493 C1' U A 47 alpha beta 1488 1508 1494 1491 1523 C1' U A 48 alpha beta 1518 1538 1524 1521 1553 C1' U A 49 alpha beta 1548 1568 1554 1551 1583 C1' U A 50 alpha beta 1578 1598 1584 1581 1613 C1' A A 51 alpha beta 1608 1630 1614 1611 1646 C1' C A 52 alpha beta 1641 1661 1647 1644 1677 C1' A A 53 alpha beta 1672 1694 1678 1675 1710 C1' A A 54 alpha beta 1705 1727 1711 1708 1743 C1' A A 55 alpha beta 1738 1760 1744 1741 1776 C1' G A 56 alpha beta 1771 1794 1777 1774 1810 C1' A A 57 alpha beta 1805 1827 1811 1808 1843 C1' G A 58 alpha beta 1838 1861 1844 1841 1877 C1' A A 59 alpha beta 1872 1894 1878 1875 1910 C1' U A 60 alpha beta 1905 1925 1911 1908 1940 C1' U A 61 alpha beta 1935 1955 1941 1938 1970 C1' U A 62 alpha beta 1965 1985 1971 1968 2000 C1' C A 63 alpha beta 1995 2015 2001 1998 2031 C1' U A 64 alpha beta 2026 2046 2032 2029 2061 C1' U A 65 alpha beta 2056 2076 2062 2059 2091 C1' C A 66 alpha beta 2086 2106 2092 2089 2122 C1' G A 67 alpha beta 2117 2140 2123 2120 2156 C1' G A 68 alpha beta 2151 2174 2157 2154 2190 C1' G A 69 alpha beta 2185 2208 2191 2188 2224 C1' A A 70 alpha beta 2219 2241 2225 2222 2257 C1' A A 71 alpha beta 2252 2274 2258 2255 2290 C1' U A 72 alpha beta 2285 2305 2291 2288 2320 C1' C A 73 alpha beta 2315 2335 2321 2318 2351 C1' U A 74 alpha beta 2346 2366 2352 2349 2381 C1' C A 75 alpha beta 2376 2396 2382 2379 2412 C1' U A 76 alpha beta 2407 2427 2413 2410 2442 C1' U A 77 alpha beta 2437 2457 2443 2440 2472 C1' U A 78 alpha beta 2467 2487 2473 2470 2502 C1' G A 79 alpha beta 2497 2520 2503 2500 2536 C1' C A 80 alpha beta 2531 2551 2537 2534 2567 C1' C A 81 alpha beta 2562 2582 2568 2565 2598 C1' U A 82 alpha beta 2593 2613 2599 2596 2628 C1' U A 83 alpha beta 2623 2643 2629 2626 2658 C1' U A 84 alpha beta 2653 2673 2659 2656 2688 C1' U A 85 alpha beta 2683 2703 2689 2686 2718 C1' G A 86 alpha beta 2713 2736 2719 2716 2752 C1' G A 87 alpha beta 2747 2770 2753 2750 2786 C1' C A 88 alpha beta 2781 2801 2787 2784 2817 C1' U A 89 alpha beta 2812 2832 2818 2815 2847 C1' U A 90 alpha beta 2842 2862 2848 2845 2877 C1' A A 91 alpha beta 2872 2894 2878 2875 2910 C1' G A 92 alpha beta 2905 2928 2911 2908 2944 C1' A A 93 alpha beta 2939 2961 2945 2942 2977 C1' U A 94 alpha beta 2972 2992 2978 2975 3007 C1' C A 95 alpha beta 3002 3022 3008 3005 3038 C1' A A 96 alpha beta 3033 3055 3039 3036 3071 C1' A A 97 alpha beta 3066 3088 3072 3069 3104 C1' G A 98 alpha beta 3099 3122 3105 3102 3138 C1' U A 99 alpha beta 3133 3153 3139 3136 3168 C1' G A 100 alpha beta 3163 3186 3169 3166 3202 C1' U A 101 alpha beta 3197 3217 3203 3200 3232 C1' A A 102 alpha beta 3227 3249 3233 3230 3265 C1' G A 103 alpha beta 3260 3283 3266 3263 3299 C1' U A 104 alpha beta 3294 3314 3300 3297 3329 C1' A A 105 alpha beta 3324 3346 3330 3327 3362 C1' U A 106 alpha beta 3357 3377 3363 3360 3392 C1' C A 107 alpha beta 3387 3407 3393 3390 3423 C1' U A 108 alpha beta 3418 3438 3424 3421 3453 C1' G A 109 alpha beta 3448 3471 3454 3451 3487 C1' U A 110 alpha beta 3482 3502 3488 3485 3517 C1' C A 111 alpha beta 3512 3532 3518 3515 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 1 OK OK 9 5 25 8 41 C2' G A 2 OK OK 43 39 59 42 75 C2' C A 3 OK OK 77 73 90 76 106 C2' A A 4 OK OK 108 104 123 107 139 C2' A A 5 OK OK 141 137 156 140 172 C2' U A 6 OK OK 174 170 187 173 202 C2' A A 7 OK OK 204 200 219 203 235 C2' C A 8 OK OK 237 233 250 236 266 C2' A A 9 OK OK 268 264 283 267 299 C2' G A 10 OK OK 301 297 317 300 333 C2' A A 11 OK OK 335 331 350 334 366 C2' G A 12 OK OK 368 364 384 367 400 C2' A A 13 OK OK 402 398 417 401 433 C2' U A 14 OK OK 435 431 448 434 463 C2' G A 15 OK OK 465 461 481 464 497 C2' A A 16 OK OK 499 495 514 498 530 C2' U A 17 OK OK 532 528 545 531 560 C2' C A 18 OK OK 562 558 575 561 591 C2' A A 19 OK OK 593 589 608 592 624 C2' G A 20 OK OK 626 622 642 625 658 C2' C A 21 OK OK 660 656 673 659 689 C2' A A 22 OK OK 691 687 706 690 722 C2' G A 23 OK OK 724 720 740 723 756 C2' U A 24 OK OK 758 754 771 757 786 C2' U A 25 OK OK 788 784 801 787 816 C2' C A 26 OK OK 818 814 831 817 847 C2' C A 27 OK OK 849 845 862 848 878 C2' C A 28 OK OK 880 876 893 879 909 C2' C A 29 OK OK 911 907 924 910 940 C2' U A 30 OK OK 942 938 955 941 970 C2' G A 31 OK OK 972 968 988 971 1004 C2' C A 32 OK OK 1006 1002 1019 1005 1035 C2' A A 33 OK OK 1037 1033 1052 1036 1068 C2' U A 34 OK OK 1070 1066 1083 1069 1098 C2' A A 35 OK OK 1100 1096 1115 1099 1131 C2' A A 36 OK OK 1133 1129 1148 1132 1164 C2' G A 37 OK OK 1166 1162 1182 1165 1198 C2' G A 38 OK OK 1200 1196 1216 1199 1232 C2' A A 39 OK OK 1234 1230 1249 1233 1265 C2' U A 40 OK OK 1267 1263 1280 1266 1295 C2' G A 41 OK OK 1297 1293 1313 1296 1329 C2' A A 42 OK OK 1331 1327 1346 1330 1362 C2' A A 43 OK OK 1364 1360 1379 1363 1395 C2' C A 44 OK OK 1397 1393 1410 1396 1426 C2' C A 45 OK OK 1428 1424 1441 1427 1457 C2' G A 46 OK OK 1459 1455 1475 1458 1491 C2' U A 47 OK OK 1493 1489 1506 1492 1521 C2' U A 48 OK OK 1523 1519 1536 1522 1551 C2' U A 49 OK OK 1553 1549 1566 1552 1581 C2' U A 50 OK OK 1583 1579 1596 1582 1611 C2' A A 51 OK OK 1613 1609 1628 1612 1644 C2' C A 52 OK OK 1646 1642 1659 1645 1675 C2' A A 53 OK OK 1677 1673 1692 1676 1708 C2' A A 54 OK OK 1710 1706 1725 1709 1741 C2' A A 55 OK OK 1743 1739 1758 1742 1774 C2' G A 56 OK OK 1776 1772 1792 1775 1808 C2' A A 57 OK OK 1810 1806 1825 1809 1841 C2' G A 58 OK OK 1843 1839 1859 1842 1875 C2' A A 59 OK OK 1877 1873 1892 1876 1908 C2' U A 60 OK OK 1910 1906 1923 1909 1938 C2' U A 61 OK OK 1940 1936 1953 1939 1968 C2' U A 62 OK OK 1970 1966 1983 1969 1998 C2' C A 63 OK OK 2000 1996 2013 1999 2029 C2' U A 64 OK OK 2031 2027 2044 2030 2059 C2' U A 65 OK OK 2061 2057 2074 2060 2089 C2' C A 66 OK OK 2091 2087 2104 2090 2120 C2' G A 67 OK OK 2122 2118 2138 2121 2154 C2' G A 68 OK OK 2156 2152 2172 2155 2188 C2' G A 69 OK OK 2190 2186 2206 2189 2222 C2' A A 70 OK OK 2224 2220 2239 2223 2255 C2' A A 71 OK OK 2257 2253 2272 2256 2288 C2' U A 72 OK OK 2290 2286 2303 2289 2318 C2' C A 73 OK OK 2320 2316 2333 2319 2349 C2' U A 74 OK OK 2351 2347 2364 2350 2379 C2' C A 75 OK OK 2381 2377 2394 2380 2410 C2' U A 76 OK OK 2412 2408 2425 2411 2440 C2' U A 77 OK OK 2442 2438 2455 2441 2470 C2' U A 78 OK OK 2472 2468 2485 2471 2500 C2' G A 79 OK OK 2502 2498 2518 2501 2534 C2' C A 80 OK OK 2536 2532 2549 2535 2565 C2' C A 81 OK OK 2567 2563 2580 2566 2596 C2' U A 82 OK OK 2598 2594 2611 2597 2626 C2' U A 83 OK OK 2628 2624 2641 2627 2656 C2' U A 84 OK OK 2658 2654 2671 2657 2686 C2' U A 85 OK OK 2688 2684 2701 2687 2716 C2' G A 86 OK OK 2718 2714 2734 2717 2750 C2' G A 87 OK OK 2752 2748 2768 2751 2784 C2' C A 88 OK OK 2786 2782 2799 2785 2815 C2' U A 89 OK OK 2817 2813 2830 2816 2845 C2' U A 90 OK OK 2847 2843 2860 2846 2875 C2' A A 91 OK OK 2877 2873 2892 2876 2908 C2' G A 92 OK OK 2910 2906 2926 2909 2942 C2' A A 93 OK OK 2944 2940 2959 2943 2975 C2' U A 94 OK OK 2977 2973 2990 2976 3005 C2' C A 95 OK OK 3007 3003 3020 3006 3036 C2' A A 96 OK OK 3038 3034 3053 3037 3069 C2' A A 97 OK OK 3071 3067 3086 3070 3102 C2' G A 98 OK OK 3104 3100 3120 3103 3136 C2' U A 99 OK OK 3138 3134 3151 3137 3166 C2' G A 100 OK OK 3168 3164 3184 3167 3200 C2' U A 101 OK OK 3202 3198 3215 3201 3230 C2' A A 102 OK OK 3232 3228 3247 3231 3263 C2' G A 103 OK OK 3265 3261 3281 3264 3297 C2' U A 104 OK OK 3299 3295 3312 3298 3327 C2' A A 105 OK OK 3329 3325 3344 3328 3360 C2' U A 106 OK OK 3362 3358 3375 3361 3390 C2' C A 107 OK OK 3392 3388 3405 3391 3421 C2' U A 108 OK OK 3423 3419 3436 3422 3451 C2' G A 109 OK OK 3453 3449 3469 3452 3485 C2' U A 110 OK OK 3487 3483 3500 3486 3515 C2' C A 111 OK OK 3517 3513 3530 3516 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 1 OK OK 3 24 6 7 39 C3' G A 2 OK OK 37 58 40 41 73 C3' C A 3 OK OK 71 89 74 75 104 C3' A A 4 OK OK 102 122 105 106 137 C3' A A 5 OK OK 135 155 138 139 170 C3' U A 6 OK OK 168 186 171 172 200 C3' A A 7 OK OK 198 218 201 202 233 C3' C A 8 OK OK 231 249 234 235 264 C3' A A 9 OK OK 262 282 265 266 297 C3' G A 10 OK OK 295 316 298 299 331 C3' A A 11 OK OK 329 349 332 333 364 C3' G A 12 OK OK 362 383 365 366 398 C3' A A 13 OK OK 396 416 399 400 431 C3' U A 14 OK OK 429 447 432 433 461 C3' G A 15 OK OK 459 480 462 463 495 C3' A A 16 OK OK 493 513 496 497 528 C3' U A 17 OK OK 526 544 529 530 558 C3' C A 18 OK OK 556 574 559 560 589 C3' A A 19 OK OK 587 607 590 591 622 C3' G A 20 OK OK 620 641 623 624 656 C3' C A 21 OK OK 654 672 657 658 687 C3' A A 22 OK OK 685 705 688 689 720 C3' G A 23 OK OK 718 739 721 722 754 C3' U A 24 OK OK 752 770 755 756 784 C3' U A 25 OK OK 782 800 785 786 814 C3' C A 26 OK OK 812 830 815 816 845 C3' C A 27 OK OK 843 861 846 847 876 C3' C A 28 OK OK 874 892 877 878 907 C3' C A 29 OK OK 905 923 908 909 938 C3' U A 30 OK OK 936 954 939 940 968 C3' G A 31 OK OK 966 987 969 970 1002 C3' C A 32 OK OK 1000 1018 1003 1004 1033 C3' A A 33 OK OK 1031 1051 1034 1035 1066 C3' U A 34 OK OK 1064 1082 1067 1068 1096 C3' A A 35 OK OK 1094 1114 1097 1098 1129 C3' A A 36 OK OK 1127 1147 1130 1131 1162 C3' G A 37 OK OK 1160 1181 1163 1164 1196 C3' G A 38 OK OK 1194 1215 1197 1198 1230 C3' A A 39 OK OK 1228 1248 1231 1232 1263 C3' U A 40 OK OK 1261 1279 1264 1265 1293 C3' G A 41 OK OK 1291 1312 1294 1295 1327 C3' A A 42 OK OK 1325 1345 1328 1329 1360 C3' A A 43 OK OK 1358 1378 1361 1362 1393 C3' C A 44 OK OK 1391 1409 1394 1395 1424 C3' C A 45 OK OK 1422 1440 1425 1426 1455 C3' G A 46 OK OK 1453 1474 1456 1457 1489 C3' U A 47 OK OK 1487 1505 1490 1491 1519 C3' U A 48 OK OK 1517 1535 1520 1521 1549 C3' U A 49 OK OK 1547 1565 1550 1551 1579 C3' U A 50 OK OK 1577 1595 1580 1581 1609 C3' A A 51 OK OK 1607 1627 1610 1611 1642 C3' C A 52 OK OK 1640 1658 1643 1644 1673 C3' A A 53 OK OK 1671 1691 1674 1675 1706 C3' A A 54 OK OK 1704 1724 1707 1708 1739 C3' A A 55 OK OK 1737 1757 1740 1741 1772 C3' G A 56 OK OK 1770 1791 1773 1774 1806 C3' A A 57 OK OK 1804 1824 1807 1808 1839 C3' G A 58 OK OK 1837 1858 1840 1841 1873 C3' A A 59 OK OK 1871 1891 1874 1875 1906 C3' U A 60 OK OK 1904 1922 1907 1908 1936 C3' U A 61 OK OK 1934 1952 1937 1938 1966 C3' U A 62 OK OK 1964 1982 1967 1968 1996 C3' C A 63 OK OK 1994 2012 1997 1998 2027 C3' U A 64 OK OK 2025 2043 2028 2029 2057 C3' U A 65 OK OK 2055 2073 2058 2059 2087 C3' C A 66 OK OK 2085 2103 2088 2089 2118 C3' G A 67 OK OK 2116 2137 2119 2120 2152 C3' G A 68 OK OK 2150 2171 2153 2154 2186 C3' G A 69 OK OK 2184 2205 2187 2188 2220 C3' A A 70 OK OK 2218 2238 2221 2222 2253 C3' A A 71 OK OK 2251 2271 2254 2255 2286 C3' U A 72 OK OK 2284 2302 2287 2288 2316 C3' C A 73 OK OK 2314 2332 2317 2318 2347 C3' U A 74 OK OK 2345 2363 2348 2349 2377 C3' C A 75 OK OK 2375 2393 2378 2379 2408 C3' U A 76 OK OK 2406 2424 2409 2410 2438 C3' U A 77 OK OK 2436 2454 2439 2440 2468 C3' U A 78 OK OK 2466 2484 2469 2470 2498 C3' G A 79 OK OK 2496 2517 2499 2500 2532 C3' C A 80 OK OK 2530 2548 2533 2534 2563 C3' C A 81 OK OK 2561 2579 2564 2565 2594 C3' U A 82 OK OK 2592 2610 2595 2596 2624 C3' U A 83 OK OK 2622 2640 2625 2626 2654 C3' U A 84 OK OK 2652 2670 2655 2656 2684 C3' U A 85 OK OK 2682 2700 2685 2686 2714 C3' G A 86 OK OK 2712 2733 2715 2716 2748 C3' G A 87 OK OK 2746 2767 2749 2750 2782 C3' C A 88 OK OK 2780 2798 2783 2784 2813 C3' U A 89 OK OK 2811 2829 2814 2815 2843 C3' U A 90 OK OK 2841 2859 2844 2845 2873 C3' A A 91 OK OK 2871 2891 2874 2875 2906 C3' G A 92 OK OK 2904 2925 2907 2908 2940 C3' A A 93 OK OK 2938 2958 2941 2942 2973 C3' U A 94 OK OK 2971 2989 2974 2975 3003 C3' C A 95 OK OK 3001 3019 3004 3005 3034 C3' A A 96 OK OK 3032 3052 3035 3036 3067 C3' A A 97 OK OK 3065 3085 3068 3069 3100 C3' G A 98 OK OK 3098 3119 3101 3102 3134 C3' U A 99 OK OK 3132 3150 3135 3136 3164 C3' G A 100 OK OK 3162 3183 3165 3166 3198 C3' U A 101 OK OK 3196 3214 3199 3200 3228 C3' A A 102 OK OK 3226 3246 3229 3230 3261 C3' G A 103 OK OK 3259 3280 3262 3263 3295 C3' U A 104 OK OK 3293 3311 3296 3297 3325 C3' A A 105 OK OK 3323 3343 3326 3327 3358 C3' U A 106 OK OK 3356 3374 3359 3360 3388 C3' C A 107 OK OK 3386 3404 3389 3390 3419 C3' U A 108 OK OK 3417 3435 3420 3421 3449 C3' G A 109 OK OK 3447 3468 3450 3451 3483 C3' U A 110 OK OK 3481 3499 3484 3485 3513 C3' C A 111 OK OK 3511 3529 3514 3515 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 1 OK OK 5 23 2 4 37 C4' G A 2 OK OK 39 57 36 38 71 C4' C A 3 OK OK 73 88 70 72 102 C4' A A 4 OK OK 104 121 101 103 135 C4' A A 5 OK OK 137 154 134 136 168 C4' U A 6 OK OK 170 185 167 169 198 C4' A A 7 OK OK 200 217 197 199 231 C4' C A 8 OK OK 233 248 230 232 262 C4' A A 9 OK OK 264 281 261 263 295 C4' G A 10 OK OK 297 315 294 296 329 C4' A A 11 OK OK 331 348 328 330 362 C4' G A 12 OK OK 364 382 361 363 396 C4' A A 13 OK OK 398 415 395 397 429 C4' U A 14 OK OK 431 446 428 430 459 C4' G A 15 OK OK 461 479 458 460 493 C4' A A 16 OK OK 495 512 492 494 526 C4' U A 17 OK OK 528 543 525 527 556 C4' C A 18 OK OK 558 573 555 557 587 C4' A A 19 OK OK 589 606 586 588 620 C4' G A 20 OK OK 622 640 619 621 654 C4' C A 21 OK OK 656 671 653 655 685 C4' A A 22 OK OK 687 704 684 686 718 C4' G A 23 OK OK 720 738 717 719 752 C4' U A 24 OK OK 754 769 751 753 782 C4' U A 25 OK OK 784 799 781 783 812 C4' C A 26 OK OK 814 829 811 813 843 C4' C A 27 OK OK 845 860 842 844 874 C4' C A 28 OK OK 876 891 873 875 905 C4' C A 29 OK OK 907 922 904 906 936 C4' U A 30 OK OK 938 953 935 937 966 C4' G A 31 OK OK 968 986 965 967 1000 C4' C A 32 OK OK 1002 1017 999 1001 1031 C4' A A 33 OK OK 1033 1050 1030 1032 1064 C4' U A 34 OK OK 1066 1081 1063 1065 1094 C4' A A 35 OK OK 1096 1113 1093 1095 1127 C4' A A 36 OK OK 1129 1146 1126 1128 1160 C4' G A 37 OK OK 1162 1180 1159 1161 1194 C4' G A 38 OK OK 1196 1214 1193 1195 1228 C4' A A 39 OK OK 1230 1247 1227 1229 1261 C4' U A 40 OK OK 1263 1278 1260 1262 1291 C4' G A 41 OK OK 1293 1311 1290 1292 1325 C4' A A 42 OK OK 1327 1344 1324 1326 1358 C4' A A 43 OK OK 1360 1377 1357 1359 1391 C4' C A 44 OK OK 1393 1408 1390 1392 1422 C4' C A 45 OK OK 1424 1439 1421 1423 1453 C4' G A 46 OK OK 1455 1473 1452 1454 1487 C4' U A 47 OK OK 1489 1504 1486 1488 1517 C4' U A 48 OK OK 1519 1534 1516 1518 1547 C4' U A 49 OK OK 1549 1564 1546 1548 1577 C4' U A 50 OK OK 1579 1594 1576 1578 1607 C4' A A 51 OK OK 1609 1626 1606 1608 1640 C4' C A 52 OK OK 1642 1657 1639 1641 1671 C4' A A 53 OK OK 1673 1690 1670 1672 1704 C4' A A 54 OK OK 1706 1723 1703 1705 1737 C4' A A 55 OK OK 1739 1756 1736 1738 1770 C4' G A 56 OK OK 1772 1790 1769 1771 1804 C4' A A 57 OK OK 1806 1823 1803 1805 1837 C4' G A 58 OK OK 1839 1857 1836 1838 1871 C4' A A 59 OK OK 1873 1890 1870 1872 1904 C4' U A 60 OK OK 1906 1921 1903 1905 1934 C4' U A 61 OK OK 1936 1951 1933 1935 1964 C4' U A 62 OK OK 1966 1981 1963 1965 1994 C4' C A 63 OK OK 1996 2011 1993 1995 2025 C4' U A 64 OK OK 2027 2042 2024 2026 2055 C4' U A 65 OK OK 2057 2072 2054 2056 2085 C4' C A 66 OK OK 2087 2102 2084 2086 2116 C4' G A 67 OK OK 2118 2136 2115 2117 2150 C4' G A 68 OK OK 2152 2170 2149 2151 2184 C4' G A 69 OK OK 2186 2204 2183 2185 2218 C4' A A 70 OK OK 2220 2237 2217 2219 2251 C4' A A 71 OK OK 2253 2270 2250 2252 2284 C4' U A 72 OK OK 2286 2301 2283 2285 2314 C4' C A 73 OK OK 2316 2331 2313 2315 2345 C4' U A 74 OK OK 2347 2362 2344 2346 2375 C4' C A 75 OK OK 2377 2392 2374 2376 2406 C4' U A 76 OK OK 2408 2423 2405 2407 2436 C4' U A 77 OK OK 2438 2453 2435 2437 2466 C4' U A 78 OK OK 2468 2483 2465 2467 2496 C4' G A 79 OK OK 2498 2516 2495 2497 2530 C4' C A 80 OK OK 2532 2547 2529 2531 2561 C4' C A 81 OK OK 2563 2578 2560 2562 2592 C4' U A 82 OK OK 2594 2609 2591 2593 2622 C4' U A 83 OK OK 2624 2639 2621 2623 2652 C4' U A 84 OK OK 2654 2669 2651 2653 2682 C4' U A 85 OK OK 2684 2699 2681 2683 2712 C4' G A 86 OK OK 2714 2732 2711 2713 2746 C4' G A 87 OK OK 2748 2766 2745 2747 2780 C4' C A 88 OK OK 2782 2797 2779 2781 2811 C4' U A 89 OK OK 2813 2828 2810 2812 2841 C4' U A 90 OK OK 2843 2858 2840 2842 2871 C4' A A 91 OK OK 2873 2890 2870 2872 2904 C4' G A 92 OK OK 2906 2924 2903 2905 2938 C4' A A 93 OK OK 2940 2957 2937 2939 2971 C4' U A 94 OK OK 2973 2988 2970 2972 3001 C4' C A 95 OK OK 3003 3018 3000 3002 3032 C4' A A 96 OK OK 3034 3051 3031 3033 3065 C4' A A 97 OK OK 3067 3084 3064 3066 3098 C4' G A 98 OK OK 3100 3118 3097 3099 3132 C4' U A 99 OK OK 3134 3149 3131 3133 3162 C4' G A 100 OK OK 3164 3182 3161 3163 3196 C4' U A 101 OK OK 3198 3213 3195 3197 3226 C4' A A 102 OK OK 3228 3245 3225 3227 3259 C4' G A 103 OK OK 3261 3279 3258 3260 3293 C4' U A 104 OK OK 3295 3310 3292 3294 3323 C4' A A 105 OK OK 3325 3342 3322 3324 3356 C4' U A 106 OK OK 3358 3373 3355 3357 3386 C4' C A 107 OK OK 3388 3403 3385 3387 3417 C4' U A 108 OK OK 3419 3434 3416 3418 3447 C4' G A 109 OK OK 3449 3467 3446 3448 3481 C4' U A 110 OK OK 3483 3498 3480 3482 3511 C4' C A 111 OK OK 3513 3528 3510 3512 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 1 OK OK 1 21 22 3 36 C5' G A 2 OK OK 35 55 56 37 70 C5' C A 3 OK OK 69 86 87 71 101 C5' A A 4 OK OK 100 119 120 102 134 C5' A A 5 OK OK 133 152 153 135 167 C5' U A 6 OK OK 166 183 184 168 197 C5' A A 7 OK OK 196 215 216 198 230 C5' C A 8 OK OK 229 246 247 231 261 C5' A A 9 OK OK 260 279 280 262 294 C5' G A 10 OK OK 293 313 314 295 328 C5' A A 11 OK OK 327 346 347 329 361 C5' G A 12 OK OK 360 380 381 362 395 C5' A A 13 OK OK 394 413 414 396 428 C5' U A 14 OK OK 427 444 445 429 458 C5' G A 15 OK OK 457 477 478 459 492 C5' A A 16 OK OK 491 510 511 493 525 C5' U A 17 OK OK 524 541 542 526 555 C5' C A 18 OK OK 554 571 572 556 586 C5' A A 19 OK OK 585 604 605 587 619 C5' G A 20 OK OK 618 638 639 620 653 C5' C A 21 OK OK 652 669 670 654 684 C5' A A 22 OK OK 683 702 703 685 717 C5' G A 23 OK OK 716 736 737 718 751 C5' U A 24 OK OK 750 767 768 752 781 C5' U A 25 OK OK 780 797 798 782 811 C5' C A 26 OK OK 810 827 828 812 842 C5' C A 27 OK OK 841 858 859 843 873 C5' C A 28 OK OK 872 889 890 874 904 C5' C A 29 OK OK 903 920 921 905 935 C5' U A 30 OK OK 934 951 952 936 965 C5' G A 31 OK OK 964 984 985 966 999 C5' C A 32 OK OK 998 1015 1016 1000 1030 C5' A A 33 OK OK 1029 1048 1049 1031 1063 C5' U A 34 OK OK 1062 1079 1080 1064 1093 C5' A A 35 OK OK 1092 1111 1112 1094 1126 C5' A A 36 OK OK 1125 1144 1145 1127 1159 C5' G A 37 OK OK 1158 1178 1179 1160 1193 C5' G A 38 OK OK 1192 1212 1213 1194 1227 C5' A A 39 OK OK 1226 1245 1246 1228 1260 C5' U A 40 OK OK 1259 1276 1277 1261 1290 C5' G A 41 OK OK 1289 1309 1310 1291 1324 C5' A A 42 OK OK 1323 1342 1343 1325 1357 C5' A A 43 OK OK 1356 1375 1376 1358 1390 C5' C A 44 OK OK 1389 1406 1407 1391 1421 C5' C A 45 OK OK 1420 1437 1438 1422 1452 C5' G A 46 OK OK 1451 1471 1472 1453 1486 C5' U A 47 OK OK 1485 1502 1503 1487 1516 C5' U A 48 OK OK 1515 1532 1533 1517 1546 C5' U A 49 OK OK 1545 1562 1563 1547 1576 C5' U A 50 OK OK 1575 1592 1593 1577 1606 C5' A A 51 OK OK 1605 1624 1625 1607 1639 C5' C A 52 OK OK 1638 1655 1656 1640 1670 C5' A A 53 OK OK 1669 1688 1689 1671 1703 C5' A A 54 OK OK 1702 1721 1722 1704 1736 C5' A A 55 OK OK 1735 1754 1755 1737 1769 C5' G A 56 OK OK 1768 1788 1789 1770 1803 C5' A A 57 OK OK 1802 1821 1822 1804 1836 C5' G A 58 OK OK 1835 1855 1856 1837 1870 C5' A A 59 OK OK 1869 1888 1889 1871 1903 C5' U A 60 OK OK 1902 1919 1920 1904 1933 C5' U A 61 OK OK 1932 1949 1950 1934 1963 C5' U A 62 OK OK 1962 1979 1980 1964 1993 C5' C A 63 OK OK 1992 2009 2010 1994 2024 C5' U A 64 OK OK 2023 2040 2041 2025 2054 C5' U A 65 OK OK 2053 2070 2071 2055 2084 C5' C A 66 OK OK 2083 2100 2101 2085 2115 C5' G A 67 OK OK 2114 2134 2135 2116 2149 C5' G A 68 OK OK 2148 2168 2169 2150 2183 C5' G A 69 OK OK 2182 2202 2203 2184 2217 C5' A A 70 OK OK 2216 2235 2236 2218 2250 C5' A A 71 OK OK 2249 2268 2269 2251 2283 C5' U A 72 OK OK 2282 2299 2300 2284 2313 C5' C A 73 OK OK 2312 2329 2330 2314 2344 C5' U A 74 OK OK 2343 2360 2361 2345 2374 C5' C A 75 OK OK 2373 2390 2391 2375 2405 C5' U A 76 OK OK 2404 2421 2422 2406 2435 C5' U A 77 OK OK 2434 2451 2452 2436 2465 C5' U A 78 OK OK 2464 2481 2482 2466 2495 C5' G A 79 OK OK 2494 2514 2515 2496 2529 C5' C A 80 OK OK 2528 2545 2546 2530 2560 C5' C A 81 OK OK 2559 2576 2577 2561 2591 C5' U A 82 OK OK 2590 2607 2608 2592 2621 C5' U A 83 OK OK 2620 2637 2638 2622 2651 C5' U A 84 OK OK 2650 2667 2668 2652 2681 C5' U A 85 OK OK 2680 2697 2698 2682 2711 C5' G A 86 OK OK 2710 2730 2731 2712 2745 C5' G A 87 OK OK 2744 2764 2765 2746 2779 C5' C A 88 OK OK 2778 2795 2796 2780 2810 C5' U A 89 OK OK 2809 2826 2827 2811 2840 C5' U A 90 OK OK 2839 2856 2857 2841 2870 C5' A A 91 OK OK 2869 2888 2889 2871 2903 C5' G A 92 OK OK 2902 2922 2923 2904 2937 C5' A A 93 OK OK 2936 2955 2956 2938 2970 C5' U A 94 OK OK 2969 2986 2987 2971 3000 C5' C A 95 OK OK 2999 3016 3017 3001 3031 C5' A A 96 OK OK 3030 3049 3050 3032 3064 C5' A A 97 OK OK 3063 3082 3083 3065 3097 C5' G A 98 OK OK 3096 3116 3117 3098 3131 C5' U A 99 OK OK 3130 3147 3148 3132 3161 C5' G A 100 OK OK 3160 3180 3181 3162 3195 C5' U A 101 OK OK 3194 3211 3212 3196 3225 C5' A A 102 OK OK 3224 3243 3244 3226 3258 C5' G A 103 OK OK 3257 3277 3278 3259 3292 C5' U A 104 OK OK 3291 3308 3309 3293 3322 C5' A A 105 OK OK 3321 3340 3341 3323 3355 C5' U A 106 OK OK 3354 3371 3372 3356 3385 C5' C A 107 OK OK 3384 3401 3402 3386 3416 C5' U A 108 OK OK 3415 3432 3433 3417 3446 C5' G A 109 OK OK 3445 3465 3466 3447 3480 C5' U A 110 OK OK 3479 3496 3497 3481 3510 C5' C A 111 OK OK 3509 3526 3527 3511 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 32 P G A 2 distorted distorted 6 33 34 35 66 P C A 3 distorted distorted 40 67 68 69 97 P A A 4 distorted distorted 74 98 99 100 130 P A A 5 distorted distorted 105 131 132 133 163 P U A 6 distorted distorted 138 164 165 166 193 P A A 7 distorted distorted 171 194 195 196 226 P C A 8 distorted distorted 201 227 228 229 257 P A A 9 distorted distorted 234 258 259 260 290 P G A 10 distorted distorted 265 291 292 293 324 P A A 11 distorted distorted 298 325 326 327 357 P G A 12 distorted distorted 332 358 359 360 391 P A A 13 distorted distorted 365 392 393 394 424 P U A 14 distorted distorted 399 425 426 427 454 P G A 15 distorted distorted 432 455 456 457 488 P A A 16 distorted distorted 462 489 490 491 521 P U A 17 distorted distorted 496 522 523 524 551 P C A 18 distorted distorted 529 552 553 554 582 P A A 19 distorted distorted 559 583 584 585 615 P G A 20 distorted distorted 590 616 617 618 649 P C A 21 distorted distorted 623 650 651 652 680 P A A 22 distorted distorted 657 681 682 683 713 P G A 23 distorted distorted 688 714 715 716 747 P U A 24 distorted distorted 721 748 749 750 777 P U A 25 distorted distorted 755 778 779 780 807 P C A 26 distorted distorted 785 808 809 810 838 P C A 27 distorted distorted 815 839 840 841 869 P C A 28 distorted distorted 846 870 871 872 900 P C A 29 distorted distorted 877 901 902 903 931 P U A 30 distorted distorted 908 932 933 934 961 P G A 31 distorted distorted 939 962 963 964 995 P C A 32 distorted distorted 969 996 997 998 1026 P A A 33 distorted distorted 1003 1027 1028 1029 1059 P U A 34 distorted distorted 1034 1060 1061 1062 1089 P A A 35 distorted distorted 1067 1090 1091 1092 1122 P A A 36 distorted distorted 1097 1123 1124 1125 1155 P G A 37 distorted distorted 1130 1156 1157 1158 1189 P G A 38 distorted distorted 1163 1190 1191 1192 1223 P A A 39 distorted distorted 1197 1224 1225 1226 1256 P U A 40 distorted distorted 1231 1257 1258 1259 1286 P G A 41 distorted distorted 1264 1287 1288 1289 1320 P A A 42 distorted distorted 1294 1321 1322 1323 1353 P A A 43 distorted distorted 1328 1354 1355 1356 1386 P C A 44 distorted distorted 1361 1387 1388 1389 1417 P C A 45 distorted distorted 1394 1418 1419 1420 1448 P G A 46 distorted distorted 1425 1449 1450 1451 1482 P U A 47 distorted distorted 1456 1483 1484 1485 1512 P U A 48 distorted distorted 1490 1513 1514 1515 1542 P U A 49 distorted distorted 1520 1543 1544 1545 1572 P U A 50 distorted distorted 1550 1573 1574 1575 1602 P A A 51 distorted distorted 1580 1603 1604 1605 1635 P C A 52 distorted distorted 1610 1636 1637 1638 1666 P A A 53 distorted distorted 1643 1667 1668 1669 1699 P A A 54 distorted distorted 1674 1700 1701 1702 1732 P A A 55 distorted distorted 1707 1733 1734 1735 1765 P G A 56 distorted distorted 1740 1766 1767 1768 1799 P A A 57 distorted distorted 1773 1800 1801 1802 1832 P G A 58 distorted distorted 1807 1833 1834 1835 1866 P A A 59 distorted distorted 1840 1867 1868 1869 1899 P U A 60 distorted distorted 1874 1900 1901 1902 1929 P U A 61 distorted distorted 1907 1930 1931 1932 1959 P U A 62 distorted distorted 1937 1960 1961 1962 1989 P C A 63 distorted distorted 1967 1990 1991 1992 2020 P U A 64 distorted distorted 1997 2021 2022 2023 2050 P U A 65 distorted distorted 2028 2051 2052 2053 2080 P C A 66 distorted distorted 2058 2081 2082 2083 2111 P G A 67 distorted distorted 2088 2112 2113 2114 2145 P G A 68 distorted distorted 2119 2146 2147 2148 2179 P G A 69 distorted distorted 2153 2180 2181 2182 2213 P A A 70 distorted distorted 2187 2214 2215 2216 2246 P A A 71 distorted distorted 2221 2247 2248 2249 2279 P U A 72 distorted distorted 2254 2280 2281 2282 2309 P C A 73 distorted distorted 2287 2310 2311 2312 2340 P U A 74 distorted distorted 2317 2341 2342 2343 2370 P C A 75 distorted distorted 2348 2371 2372 2373 2401 P U A 76 distorted distorted 2378 2402 2403 2404 2431 P U A 77 distorted distorted 2409 2432 2433 2434 2461 P U A 78 distorted distorted 2439 2462 2463 2464 2491 P G A 79 distorted distorted 2469 2492 2493 2494 2525 P C A 80 distorted distorted 2499 2526 2527 2528 2556 P C A 81 distorted distorted 2533 2557 2558 2559 2587 P U A 82 distorted distorted 2564 2588 2589 2590 2617 P U A 83 distorted distorted 2595 2618 2619 2620 2647 P U A 84 distorted distorted 2625 2648 2649 2650 2677 P U A 85 distorted distorted 2655 2678 2679 2680 2707 P G A 86 distorted distorted 2685 2708 2709 2710 2741 P G A 87 distorted distorted 2715 2742 2743 2744 2775 P C A 88 distorted distorted 2749 2776 2777 2778 2806 P U A 89 distorted distorted 2783 2807 2808 2809 2836 P U A 90 distorted distorted 2814 2837 2838 2839 2866 P A A 91 distorted distorted 2844 2867 2868 2869 2899 P G A 92 distorted distorted 2874 2900 2901 2902 2933 P A A 93 distorted distorted 2907 2934 2935 2936 2966 P U A 94 distorted distorted 2941 2967 2968 2969 2996 P C A 95 distorted distorted 2974 2997 2998 2999 3027 P A A 96 distorted distorted 3004 3028 3029 3030 3060 P A A 97 distorted distorted 3035 3061 3062 3063 3093 P G A 98 distorted distorted 3068 3094 3095 3096 3127 P U A 99 distorted distorted 3101 3128 3129 3130 3157 P G A 100 distorted distorted 3135 3158 3159 3160 3191 P U A 101 distorted distorted 3165 3192 3193 3194 3221 P A A 102 distorted distorted 3199 3222 3223 3224 3254 P G A 103 distorted distorted 3229 3255 3256 3257 3288 P U A 104 distorted distorted 3262 3289 3290 3291 3318 P A A 105 distorted distorted 3296 3319 3320 3321 3351 P U A 106 distorted distorted 3326 3352 3353 3354 3381 P C A 107 distorted distorted 3359 3382 3383 3384 3412 P U A 108 distorted distorted 3389 3413 3414 3415 3442 P G A 109 distorted distorted 3420 3443 3444 3445 3476 P U A 110 distorted distorted 3450 3477 3478 3479 3506 P C A 111 distorted distorted 3484 3507 3508 3509 ---------------------------------------------------------------------------------