ID code: '2L3J' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 3261 C1' G B 237 alpha beta 3256 3279 3262 3259 3296 C1' G B 238 alpha beta 3291 3314 3297 3294 3330 C1' C B 239 alpha beta 3325 3345 3331 3328 3361 C1' A B 240 alpha beta 3356 3378 3362 3359 3394 C1' U B 241 alpha beta 3389 3409 3395 3392 3424 C1' U B 242 alpha beta 3419 3439 3425 3422 3454 C1' A B 243 alpha beta 3449 3471 3455 3452 3487 C1' A B 244 alpha beta 3482 3504 3488 3485 3520 C1' G B 245 alpha beta 3515 3538 3521 3518 3554 C1' G B 246 alpha beta 3549 3572 3555 3552 3588 C1' U B 247 alpha beta 3583 3603 3589 3586 3618 C1' G B 248 alpha beta 3613 3636 3619 3616 3652 C1' G B 249 alpha beta 3647 3670 3653 3650 3686 C1' G B 250 alpha beta 3681 3704 3687 3684 3720 C1' U B 251 alpha beta 3715 3735 3721 3718 3750 C1' G B 252 alpha beta 3745 3768 3751 3748 3784 C1' G B 253 alpha beta 3779 3802 3785 3782 3818 C1' A B 254 alpha beta 3813 3835 3819 3816 3851 C1' A B 255 alpha beta 3846 3868 3852 3849 3884 C1' U B 256 alpha beta 3879 3899 3885 3882 3914 C1' A B 257 alpha beta 3909 3931 3915 3912 3947 C1' G B 258 alpha beta 3942 3965 3948 3945 3981 C1' U B 259 alpha beta 3976 3996 3982 3979 4011 C1' A B 260 alpha beta 4006 4028 4012 4009 4044 C1' U B 261 alpha beta 4039 4059 4045 4042 4074 C1' A B 262 alpha beta 4069 4091 4075 4072 4107 C1' A B 263 alpha beta 4102 4124 4108 4105 4140 C1' C B 264 alpha beta 4135 4155 4141 4138 4171 C1' A B 265 alpha beta 4166 4188 4172 4169 4204 C1' A B 266 alpha beta 4199 4221 4205 4202 4237 C1' U B 267 alpha beta 4232 4252 4238 4235 4267 C1' A B 268 alpha beta 4262 4284 4268 4265 4300 C1' U B 269 alpha beta 4295 4315 4301 4298 4330 C1' G B 270 alpha beta 4325 4348 4331 4328 4364 C1' C B 271 alpha beta 4359 4379 4365 4362 4395 C1' U B 272 alpha beta 4390 4410 4396 4393 4425 C1' A B 273 alpha beta 4420 4442 4426 4423 4458 C1' A B 274 alpha beta 4453 4475 4459 4456 4491 C1' A B 275 alpha beta 4486 4508 4492 4489 4524 C1' U B 276 alpha beta 4519 4539 4525 4522 4554 C1' G B 277 alpha beta 4549 4572 4555 4552 4588 C1' U B 278 alpha beta 4583 4603 4589 4586 4618 C1' U B 279 alpha beta 4613 4633 4619 4616 4648 C1' G B 280 alpha beta 4643 4666 4649 4646 4682 C1' U B 281 alpha beta 4677 4697 4683 4680 4712 C1' U B 282 alpha beta 4707 4727 4713 4710 4742 C1' A B 283 alpha beta 4737 4759 4743 4740 4775 C1' U B 284 alpha beta 4770 4790 4776 4773 4805 C1' A B 285 alpha beta 4800 4822 4806 4803 4838 C1' G B 286 alpha beta 4833 4856 4839 4836 4872 C1' U B 287 alpha beta 4867 4887 4873 4870 4902 C1' A B 288 alpha beta 4897 4919 4903 4900 4935 C1' U B 289 alpha beta 4930 4950 4936 4933 4965 C1' C B 290 alpha beta 4960 4980 4966 4963 4996 C1' C B 291 alpha beta 4991 5011 4997 4994 5027 C1' C B 292 alpha beta 5022 5042 5028 5025 5058 C1' A B 293 alpha beta 5053 5075 5059 5056 5091 C1' C B 294 alpha beta 5086 5106 5092 5089 5122 C1' C B 295 alpha beta 5117 5137 5123 5120 5153 C1' U B 296 alpha beta 5148 5168 5154 5151 5183 C1' A B 297 alpha beta 5178 5200 5184 5181 5216 C1' C B 298 alpha beta 5211 5231 5217 5214 5247 C1' C B 299 alpha beta 5242 5262 5248 5245 5278 C1' C B 300 alpha beta 5273 5293 5279 5276 5309 C1' U B 301 alpha beta 5304 5324 5310 5307 5339 C1' G B 302 alpha beta 5334 5357 5340 5337 5373 C1' A B 303 alpha beta 5368 5390 5374 5371 5406 C1' U B 304 alpha beta 5401 5421 5407 5404 5436 C1' G B 305 alpha beta 5431 5454 5437 5434 5470 C1' C B 306 alpha beta 5465 5485 5471 5468 5501 C1' C B 307 alpha beta 5496 5517 5502 5499 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 3259 C2' G B 237 OK OK 3261 3257 3277 3260 3294 C2' G B 238 OK OK 3296 3292 3312 3295 3328 C2' C B 239 OK OK 3330 3326 3343 3329 3359 C2' A B 240 OK OK 3361 3357 3376 3360 3392 C2' U B 241 OK OK 3394 3390 3407 3393 3422 C2' U B 242 OK OK 3424 3420 3437 3423 3452 C2' A B 243 OK OK 3454 3450 3469 3453 3485 C2' A B 244 OK OK 3487 3483 3502 3486 3518 C2' G B 245 OK OK 3520 3516 3536 3519 3552 C2' G B 246 OK OK 3554 3550 3570 3553 3586 C2' U B 247 OK OK 3588 3584 3601 3587 3616 C2' G B 248 OK OK 3618 3614 3634 3617 3650 C2' G B 249 OK OK 3652 3648 3668 3651 3684 C2' G B 250 OK OK 3686 3682 3702 3685 3718 C2' U B 251 OK OK 3720 3716 3733 3719 3748 C2' G B 252 OK OK 3750 3746 3766 3749 3782 C2' G B 253 OK OK 3784 3780 3800 3783 3816 C2' A B 254 OK OK 3818 3814 3833 3817 3849 C2' A B 255 OK OK 3851 3847 3866 3850 3882 C2' U B 256 OK OK 3884 3880 3897 3883 3912 C2' A B 257 OK OK 3914 3910 3929 3913 3945 C2' G B 258 OK OK 3947 3943 3963 3946 3979 C2' U B 259 OK OK 3981 3977 3994 3980 4009 C2' A B 260 OK OK 4011 4007 4026 4010 4042 C2' U B 261 OK OK 4044 4040 4057 4043 4072 C2' A B 262 OK OK 4074 4070 4089 4073 4105 C2' A B 263 OK OK 4107 4103 4122 4106 4138 C2' C B 264 OK OK 4140 4136 4153 4139 4169 C2' A B 265 OK OK 4171 4167 4186 4170 4202 C2' A B 266 OK OK 4204 4200 4219 4203 4235 C2' U B 267 OK OK 4237 4233 4250 4236 4265 C2' A B 268 OK OK 4267 4263 4282 4266 4298 C2' U B 269 OK OK 4300 4296 4313 4299 4328 C2' G B 270 OK OK 4330 4326 4346 4329 4362 C2' C B 271 OK OK 4364 4360 4377 4363 4393 C2' U B 272 OK OK 4395 4391 4408 4394 4423 C2' A B 273 OK OK 4425 4421 4440 4424 4456 C2' A B 274 OK OK 4458 4454 4473 4457 4489 C2' A B 275 OK OK 4491 4487 4506 4490 4522 C2' U B 276 OK OK 4524 4520 4537 4523 4552 C2' G B 277 OK OK 4554 4550 4570 4553 4586 C2' U B 278 OK OK 4588 4584 4601 4587 4616 C2' U B 279 OK OK 4618 4614 4631 4617 4646 C2' G B 280 OK OK 4648 4644 4664 4647 4680 C2' U B 281 OK OK 4682 4678 4695 4681 4710 C2' U B 282 OK OK 4712 4708 4725 4711 4740 C2' A B 283 OK OK 4742 4738 4757 4741 4773 C2' U B 284 OK OK 4775 4771 4788 4774 4803 C2' A B 285 OK OK 4805 4801 4820 4804 4836 C2' G B 286 OK OK 4838 4834 4854 4837 4870 C2' U B 287 OK OK 4872 4868 4885 4871 4900 C2' A B 288 OK OK 4902 4898 4917 4901 4933 C2' U B 289 OK OK 4935 4931 4948 4934 4963 C2' C B 290 OK OK 4965 4961 4978 4964 4994 C2' C B 291 OK OK 4996 4992 5009 4995 5025 C2' C B 292 OK OK 5027 5023 5040 5026 5056 C2' A B 293 OK OK 5058 5054 5073 5057 5089 C2' C B 294 OK OK 5091 5087 5104 5090 5120 C2' C B 295 OK OK 5122 5118 5135 5121 5151 C2' U B 296 OK OK 5153 5149 5166 5152 5181 C2' A B 297 OK OK 5183 5179 5198 5182 5214 C2' C B 298 OK OK 5216 5212 5229 5215 5245 C2' C B 299 OK OK 5247 5243 5260 5246 5276 C2' C B 300 OK OK 5278 5274 5291 5277 5307 C2' U B 301 OK OK 5309 5305 5322 5308 5337 C2' G B 302 OK OK 5339 5335 5355 5338 5371 C2' A B 303 OK OK 5373 5369 5388 5372 5404 C2' U B 304 OK OK 5406 5402 5419 5405 5434 C2' G B 305 OK OK 5436 5432 5452 5435 5468 C2' C B 306 OK OK 5470 5466 5483 5469 5499 C2' C B 307 OK OK 5501 5497 5515 5500 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 3257 C3' G B 237 OK OK 3255 3276 3258 3259 3292 C3' G B 238 OK OK 3290 3311 3293 3294 3326 C3' C B 239 OK OK 3324 3342 3327 3328 3357 C3' A B 240 OK OK 3355 3375 3358 3359 3390 C3' U B 241 OK OK 3388 3406 3391 3392 3420 C3' U B 242 OK OK 3418 3436 3421 3422 3450 C3' A B 243 OK OK 3448 3468 3451 3452 3483 C3' A B 244 OK OK 3481 3501 3484 3485 3516 C3' G B 245 OK OK 3514 3535 3517 3518 3550 C3' G B 246 OK OK 3548 3569 3551 3552 3584 C3' U B 247 OK OK 3582 3600 3585 3586 3614 C3' G B 248 OK OK 3612 3633 3615 3616 3648 C3' G B 249 OK OK 3646 3667 3649 3650 3682 C3' G B 250 OK OK 3680 3701 3683 3684 3716 C3' U B 251 OK OK 3714 3732 3717 3718 3746 C3' G B 252 OK OK 3744 3765 3747 3748 3780 C3' G B 253 OK OK 3778 3799 3781 3782 3814 C3' A B 254 OK OK 3812 3832 3815 3816 3847 C3' A B 255 OK OK 3845 3865 3848 3849 3880 C3' U B 256 OK OK 3878 3896 3881 3882 3910 C3' A B 257 OK OK 3908 3928 3911 3912 3943 C3' G B 258 OK OK 3941 3962 3944 3945 3977 C3' U B 259 OK OK 3975 3993 3978 3979 4007 C3' A B 260 OK OK 4005 4025 4008 4009 4040 C3' U B 261 OK OK 4038 4056 4041 4042 4070 C3' A B 262 OK OK 4068 4088 4071 4072 4103 C3' A B 263 OK OK 4101 4121 4104 4105 4136 C3' C B 264 OK OK 4134 4152 4137 4138 4167 C3' A B 265 OK OK 4165 4185 4168 4169 4200 C3' A B 266 OK OK 4198 4218 4201 4202 4233 C3' U B 267 OK OK 4231 4249 4234 4235 4263 C3' A B 268 OK OK 4261 4281 4264 4265 4296 C3' U B 269 OK OK 4294 4312 4297 4298 4326 C3' G B 270 OK OK 4324 4345 4327 4328 4360 C3' C B 271 OK OK 4358 4376 4361 4362 4391 C3' U B 272 OK OK 4389 4407 4392 4393 4421 C3' A B 273 OK OK 4419 4439 4422 4423 4454 C3' A B 274 OK OK 4452 4472 4455 4456 4487 C3' A B 275 OK OK 4485 4505 4488 4489 4520 C3' U B 276 OK OK 4518 4536 4521 4522 4550 C3' G B 277 OK OK 4548 4569 4551 4552 4584 C3' U B 278 OK OK 4582 4600 4585 4586 4614 C3' U B 279 OK OK 4612 4630 4615 4616 4644 C3' G B 280 OK OK 4642 4663 4645 4646 4678 C3' U B 281 OK OK 4676 4694 4679 4680 4708 C3' U B 282 OK OK 4706 4724 4709 4710 4738 C3' A B 283 OK OK 4736 4756 4739 4740 4771 C3' U B 284 OK OK 4769 4787 4772 4773 4801 C3' A B 285 OK OK 4799 4819 4802 4803 4834 C3' G B 286 OK OK 4832 4853 4835 4836 4868 C3' U B 287 OK OK 4866 4884 4869 4870 4898 C3' A B 288 OK OK 4896 4916 4899 4900 4931 C3' U B 289 OK OK 4929 4947 4932 4933 4961 C3' C B 290 OK OK 4959 4977 4962 4963 4992 C3' C B 291 OK OK 4990 5008 4993 4994 5023 C3' C B 292 OK OK 5021 5039 5024 5025 5054 C3' A B 293 OK OK 5052 5072 5055 5056 5087 C3' C B 294 OK OK 5085 5103 5088 5089 5118 C3' C B 295 OK OK 5116 5134 5119 5120 5149 C3' U B 296 OK OK 5147 5165 5150 5151 5179 C3' A B 297 OK OK 5177 5197 5180 5181 5212 C3' C B 298 OK OK 5210 5228 5213 5214 5243 C3' C B 299 OK OK 5241 5259 5244 5245 5274 C3' C B 300 OK OK 5272 5290 5275 5276 5305 C3' U B 301 OK OK 5303 5321 5306 5307 5335 C3' G B 302 OK OK 5333 5354 5336 5337 5369 C3' A B 303 OK OK 5367 5387 5370 5371 5402 C3' U B 304 OK OK 5400 5418 5403 5404 5432 C3' G B 305 OK OK 5430 5451 5433 5434 5466 C3' C B 306 OK OK 5464 5482 5467 5468 5497 C3' C B 307 OK OK 5495 5513 5498 5499 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3255 C4' G B 237 OK OK 3257 3275 3254 3256 3290 C4' G B 238 OK OK 3292 3310 3289 3291 3324 C4' C B 239 OK OK 3326 3341 3323 3325 3355 C4' A B 240 OK OK 3357 3374 3354 3356 3388 C4' U B 241 OK OK 3390 3405 3387 3389 3418 C4' U B 242 OK OK 3420 3435 3417 3419 3448 C4' A B 243 OK OK 3450 3467 3447 3449 3481 C4' A B 244 OK OK 3483 3500 3480 3482 3514 C4' G B 245 OK OK 3516 3534 3513 3515 3548 C4' G B 246 OK OK 3550 3568 3547 3549 3582 C4' U B 247 OK OK 3584 3599 3581 3583 3612 C4' G B 248 OK OK 3614 3632 3611 3613 3646 C4' G B 249 OK OK 3648 3666 3645 3647 3680 C4' G B 250 OK OK 3682 3700 3679 3681 3714 C4' U B 251 OK OK 3716 3731 3713 3715 3744 C4' G B 252 OK OK 3746 3764 3743 3745 3778 C4' G B 253 OK OK 3780 3798 3777 3779 3812 C4' A B 254 OK OK 3814 3831 3811 3813 3845 C4' A B 255 OK OK 3847 3864 3844 3846 3878 C4' U B 256 OK OK 3880 3895 3877 3879 3908 C4' A B 257 OK OK 3910 3927 3907 3909 3941 C4' G B 258 OK OK 3943 3961 3940 3942 3975 C4' U B 259 OK OK 3977 3992 3974 3976 4005 C4' A B 260 OK OK 4007 4024 4004 4006 4038 C4' U B 261 OK OK 4040 4055 4037 4039 4068 C4' A B 262 OK OK 4070 4087 4067 4069 4101 C4' A B 263 OK OK 4103 4120 4100 4102 4134 C4' C B 264 OK OK 4136 4151 4133 4135 4165 C4' A B 265 OK OK 4167 4184 4164 4166 4198 C4' A B 266 OK OK 4200 4217 4197 4199 4231 C4' U B 267 OK OK 4233 4248 4230 4232 4261 C4' A B 268 OK OK 4263 4280 4260 4262 4294 C4' U B 269 OK OK 4296 4311 4293 4295 4324 C4' G B 270 OK OK 4326 4344 4323 4325 4358 C4' C B 271 OK OK 4360 4375 4357 4359 4389 C4' U B 272 OK OK 4391 4406 4388 4390 4419 C4' A B 273 OK OK 4421 4438 4418 4420 4452 C4' A B 274 OK OK 4454 4471 4451 4453 4485 C4' A B 275 OK OK 4487 4504 4484 4486 4518 C4' U B 276 OK OK 4520 4535 4517 4519 4548 C4' G B 277 OK OK 4550 4568 4547 4549 4582 C4' U B 278 OK OK 4584 4599 4581 4583 4612 C4' U B 279 OK OK 4614 4629 4611 4613 4642 C4' G B 280 OK OK 4644 4662 4641 4643 4676 C4' U B 281 OK OK 4678 4693 4675 4677 4706 C4' U B 282 OK OK 4708 4723 4705 4707 4736 C4' A B 283 OK OK 4738 4755 4735 4737 4769 C4' U B 284 OK OK 4771 4786 4768 4770 4799 C4' A B 285 OK OK 4801 4818 4798 4800 4832 C4' G B 286 OK OK 4834 4852 4831 4833 4866 C4' U B 287 OK OK 4868 4883 4865 4867 4896 C4' A B 288 OK OK 4898 4915 4895 4897 4929 C4' U B 289 OK OK 4931 4946 4928 4930 4959 C4' C B 290 OK OK 4961 4976 4958 4960 4990 C4' C B 291 OK OK 4992 5007 4989 4991 5021 C4' C B 292 OK OK 5023 5038 5020 5022 5052 C4' A B 293 OK OK 5054 5071 5051 5053 5085 C4' C B 294 OK OK 5087 5102 5084 5086 5116 C4' C B 295 OK OK 5118 5133 5115 5117 5147 C4' U B 296 OK OK 5149 5164 5146 5148 5177 C4' A B 297 OK OK 5179 5196 5176 5178 5210 C4' C B 298 OK OK 5212 5227 5209 5211 5241 C4' C B 299 OK OK 5243 5258 5240 5242 5272 C4' C B 300 OK OK 5274 5289 5271 5273 5303 C4' U B 301 OK OK 5305 5320 5302 5304 5333 C4' G B 302 OK OK 5335 5353 5332 5334 5367 C4' A B 303 OK OK 5369 5386 5366 5368 5400 C4' U B 304 OK OK 5402 5417 5399 5401 5430 C4' G B 305 OK OK 5432 5450 5429 5431 5464 C4' C B 306 OK OK 5466 5481 5463 5465 5495 C4' C B 307 OK OK 5497 5512 5494 5496 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 3254 C5' G B 237 OK OK 3253 3273 3274 3255 3289 C5' G B 238 OK OK 3288 3308 3309 3290 3323 C5' C B 239 OK OK 3322 3339 3340 3324 3354 C5' A B 240 OK OK 3353 3372 3373 3355 3387 C5' U B 241 OK OK 3386 3403 3404 3388 3417 C5' U B 242 OK OK 3416 3433 3434 3418 3447 C5' A B 243 OK OK 3446 3465 3466 3448 3480 C5' A B 244 OK OK 3479 3498 3499 3481 3513 C5' G B 245 OK OK 3512 3532 3533 3514 3547 C5' G B 246 OK OK 3546 3566 3567 3548 3581 C5' U B 247 OK OK 3580 3597 3598 3582 3611 C5' G B 248 OK OK 3610 3630 3631 3612 3645 C5' G B 249 OK OK 3644 3664 3665 3646 3679 C5' G B 250 OK OK 3678 3698 3699 3680 3713 C5' U B 251 OK OK 3712 3729 3730 3714 3743 C5' G B 252 OK OK 3742 3762 3763 3744 3777 C5' G B 253 OK OK 3776 3796 3797 3778 3811 C5' A B 254 OK OK 3810 3829 3830 3812 3844 C5' A B 255 OK OK 3843 3862 3863 3845 3877 C5' U B 256 OK OK 3876 3893 3894 3878 3907 C5' A B 257 OK OK 3906 3925 3926 3908 3940 C5' G B 258 OK OK 3939 3959 3960 3941 3974 C5' U B 259 OK OK 3973 3990 3991 3975 4004 C5' A B 260 OK OK 4003 4022 4023 4005 4037 C5' U B 261 OK OK 4036 4053 4054 4038 4067 C5' A B 262 OK OK 4066 4085 4086 4068 4100 C5' A B 263 OK OK 4099 4118 4119 4101 4133 C5' C B 264 OK OK 4132 4149 4150 4134 4164 C5' A B 265 OK OK 4163 4182 4183 4165 4197 C5' A B 266 OK OK 4196 4215 4216 4198 4230 C5' U B 267 OK OK 4229 4246 4247 4231 4260 C5' A B 268 OK OK 4259 4278 4279 4261 4293 C5' U B 269 OK OK 4292 4309 4310 4294 4323 C5' G B 270 OK OK 4322 4342 4343 4324 4357 C5' C B 271 OK OK 4356 4373 4374 4358 4388 C5' U B 272 OK OK 4387 4404 4405 4389 4418 C5' A B 273 OK OK 4417 4436 4437 4419 4451 C5' A B 274 OK OK 4450 4469 4470 4452 4484 C5' A B 275 OK OK 4483 4502 4503 4485 4517 C5' U B 276 OK OK 4516 4533 4534 4518 4547 C5' G B 277 OK OK 4546 4566 4567 4548 4581 C5' U B 278 OK OK 4580 4597 4598 4582 4611 C5' U B 279 OK OK 4610 4627 4628 4612 4641 C5' G B 280 OK OK 4640 4660 4661 4642 4675 C5' U B 281 OK OK 4674 4691 4692 4676 4705 C5' U B 282 OK OK 4704 4721 4722 4706 4735 C5' A B 283 OK OK 4734 4753 4754 4736 4768 C5' U B 284 OK OK 4767 4784 4785 4769 4798 C5' A B 285 OK OK 4797 4816 4817 4799 4831 C5' G B 286 OK OK 4830 4850 4851 4832 4865 C5' U B 287 OK OK 4864 4881 4882 4866 4895 C5' A B 288 OK OK 4894 4913 4914 4896 4928 C5' U B 289 OK OK 4927 4944 4945 4929 4958 C5' C B 290 OK OK 4957 4974 4975 4959 4989 C5' C B 291 OK OK 4988 5005 5006 4990 5020 C5' C B 292 OK OK 5019 5036 5037 5021 5051 C5' A B 293 OK OK 5050 5069 5070 5052 5084 C5' C B 294 OK OK 5083 5100 5101 5085 5115 C5' C B 295 OK OK 5114 5131 5132 5116 5146 C5' U B 296 OK OK 5145 5162 5163 5147 5176 C5' A B 297 OK OK 5175 5194 5195 5177 5209 C5' C B 298 OK OK 5208 5225 5226 5210 5240 C5' C B 299 OK OK 5239 5256 5257 5241 5271 C5' C B 300 OK OK 5270 5287 5288 5272 5302 C5' U B 301 OK OK 5301 5318 5319 5303 5332 C5' G B 302 OK OK 5331 5351 5352 5333 5366 C5' A B 303 OK OK 5365 5384 5385 5367 5399 C5' U B 304 OK OK 5398 5415 5416 5400 5429 C5' G B 305 OK OK 5428 5448 5449 5430 5463 C5' C B 306 OK OK 5462 5479 5480 5464 5494 C5' C B 307 OK OK 5493 5510 5511 5495 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 3285 P G B 238 distorted distorted 3258 3286 3287 3288 3319 P C B 239 distorted distorted 3293 3320 3321 3322 3350 P A B 240 distorted distorted 3327 3351 3352 3353 3383 P U B 241 distorted distorted 3358 3384 3385 3386 3413 P U B 242 distorted distorted 3391 3414 3415 3416 3443 P A B 243 distorted distorted 3421 3444 3445 3446 3476 P A B 244 distorted distorted 3451 3477 3478 3479 3509 P G B 245 distorted distorted 3484 3510 3511 3512 3543 P G B 246 distorted distorted 3517 3544 3545 3546 3577 P U B 247 distorted distorted 3551 3578 3579 3580 3607 P G B 248 distorted distorted 3585 3608 3609 3610 3641 P G B 249 distorted distorted 3615 3642 3643 3644 3675 P G B 250 distorted distorted 3649 3676 3677 3678 3709 P U B 251 distorted distorted 3683 3710 3711 3712 3739 P G B 252 distorted distorted 3717 3740 3741 3742 3773 P G B 253 distorted distorted 3747 3774 3775 3776 3807 P A B 254 distorted distorted 3781 3808 3809 3810 3840 P A B 255 distorted distorted 3815 3841 3842 3843 3873 P U B 256 distorted distorted 3848 3874 3875 3876 3903 P A B 257 distorted distorted 3881 3904 3905 3906 3936 P G B 258 distorted distorted 3911 3937 3938 3939 3970 P U B 259 distorted distorted 3944 3971 3972 3973 4000 P A B 260 distorted distorted 3978 4001 4002 4003 4033 P U B 261 distorted distorted 4008 4034 4035 4036 4063 P A B 262 distorted distorted 4041 4064 4065 4066 4096 P A B 263 distorted distorted 4071 4097 4098 4099 4129 P C B 264 distorted distorted 4104 4130 4131 4132 4160 P A B 265 distorted distorted 4137 4161 4162 4163 4193 P A B 266 distorted distorted 4168 4194 4195 4196 4226 P U B 267 distorted distorted 4201 4227 4228 4229 4256 P A B 268 distorted distorted 4234 4257 4258 4259 4289 P U B 269 distorted distorted 4264 4290 4291 4292 4319 P G B 270 distorted distorted 4297 4320 4321 4322 4353 P C B 271 distorted distorted 4327 4354 4355 4356 4384 P U B 272 distorted distorted 4361 4385 4386 4387 4414 P A B 273 distorted distorted 4392 4415 4416 4417 4447 P A B 274 distorted distorted 4422 4448 4449 4450 4480 P A B 275 distorted distorted 4455 4481 4482 4483 4513 P U B 276 distorted distorted 4488 4514 4515 4516 4543 P G B 277 distorted distorted 4521 4544 4545 4546 4577 P U B 278 distorted distorted 4551 4578 4579 4580 4607 P U B 279 distorted distorted 4585 4608 4609 4610 4637 P G B 280 distorted distorted 4615 4638 4639 4640 4671 P U B 281 distorted distorted 4645 4672 4673 4674 4701 P U B 282 distorted distorted 4679 4702 4703 4704 4731 P A B 283 distorted distorted 4709 4732 4733 4734 4764 P U B 284 distorted distorted 4739 4765 4766 4767 4794 P A B 285 distorted distorted 4772 4795 4796 4797 4827 P G B 286 distorted distorted 4802 4828 4829 4830 4861 P U B 287 distorted distorted 4835 4862 4863 4864 4891 P A B 288 distorted distorted 4869 4892 4893 4894 4924 P U B 289 distorted distorted 4899 4925 4926 4927 4954 P C B 290 distorted distorted 4932 4955 4956 4957 4985 P C B 291 distorted distorted 4962 4986 4987 4988 5016 P C B 292 distorted distorted 4993 5017 5018 5019 5047 P A B 293 distorted distorted 5024 5048 5049 5050 5080 P C B 294 distorted distorted 5055 5081 5082 5083 5111 P C B 295 distorted distorted 5088 5112 5113 5114 5142 P U B 296 distorted distorted 5119 5143 5144 5145 5172 P A B 297 distorted distorted 5150 5173 5174 5175 5205 P C B 298 distorted distorted 5180 5206 5207 5208 5236 P C B 299 distorted distorted 5213 5237 5238 5239 5267 P C B 300 distorted distorted 5244 5268 5269 5270 5298 P U B 301 distorted distorted 5275 5299 5300 5301 5328 P G B 302 distorted distorted 5306 5329 5330 5331 5362 P A B 303 distorted distorted 5336 5363 5364 5365 5395 P U B 304 distorted distorted 5370 5396 5397 5398 5425 P G B 305 distorted distorted 5403 5426 5427 5428 5459 P C B 306 distorted distorted 5433 5460 5461 5462 5490 P C B 307 distorted distorted 5467 5491 5492 5493 ---------------------------------------------------------------------------------