ID code: '2HO7' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' A A 0 beta 4 10 7 31 C1' G A 1 beta 26 32 29 54 C1' C A 2 beta 49 55 52 74 C1' G A 3 beta 69 75 72 97 C1' C A 4 beta 92 98 95 117 C1' C A 5 beta 112 118 115 137 C1' U A 6 132 135 149 C1' G A 7 beta 144 150 147 172 C1' G A 8 beta 167 173 170 195 C1' A A 9 beta 190 196 193 217 C1' C A 10 beta 212 218 215 237 C1' U A 11 beta 232 238 235 257 C1' U A 12 beta 252 258 255 277 C1' A A 13 beta 272 278 275 299 C1' A A 14 beta 294 300 297 321 C1' A A 15 beta 316 322 319 343 C1' G A 16 beta 338 344 341 366 C1' C A 17 beta 361 367 364 386 C1' C A 18 beta 381 387 384 406 C1' A A 19 beta 401 407 404 428 C1' U A 20 beta 423 429 426 449 C1' G B 23 beta 444 450 447 472 C1' G B 24 beta 467 473 470 495 C1' C B 25 beta 490 496 493 515 C1' U B 26 beta 510 516 513 535 C1' U B 27 beta 530 536 533 555 C1' U B 28 beta 550 556 553 575 C1' A B 29 beta 570 576 573 597 C1' A B 30 beta 592 598 595 619 C1' G B 31 beta 614 620 617 642 C1' U B 32 beta 637 643 640 662 C1' U B 33 beta 657 663 660 682 C1' G B 34 beta 677 683 680 705 C1' A B 35 beta 700 706 703 727 C1' C B 36 beta 722 728 725 747 C1' G B 37 beta 742 748 745 770 C1' A B 38 beta 765 771 768 792 C1' G B 39 beta 787 793 790 815 C1' G B 40 beta 810 816 813 838 C1' G B 41 beta 833 839 836 861 C1' C B 42 beta 856 862 859 881 C1' A B 43 beta 876 882 879 903 C1' G B 44 beta 898 904 901 926 C1' G B 45 beta 921 927 924 949 C1' G B 46 beta 944 950 947 972 C1' U B 47 beta 967 973 970 992 C1' U B 48 beta 987 993 990 1012 C1' U B 49 beta 1007 1013 1010 1032 C1' A B 50 beta 1027 1033 1030 1054 C1' U B 51 beta 1049 1055 1052 1074 C1' C B 52 beta 1069 1075 1072 1094 C1' G B 53 beta 1089 1095 1092 1117 C1' A B 54 beta 1112 1118 1115 1139 C1' G B 55 beta 1134 1140 1137 1162 C1' A B 56 beta 1157 1163 1160 1184 C1' C B 57 beta 1179 1185 1182 1204 C1' A B 58 beta 1199 1205 1202 1226 C1' U B 59 beta 1221 1227 1224 1246 C1' C B 60 beta 1241 1247 1244 1266 C1' G B 61 beta 1261 1267 1264 1289 C1' G B 62 beta 1284 1290 1287 1312 C1' C B 63 beta 1307 1313 1310 1332 C1' G B 64 beta 1327 1333 1330 1355 C1' G B 65 beta 1350 1356 1353 1378 C1' G B 66 beta 1373 1379 1376 1401 C1' U B 67 beta 1396 1402 1399 1421 C1' G B 68 beta 1416 1422 1419 1444 C1' C B 69 beta 1439 1445 1442 1464 C1' C B 70 beta 1459 1465 1462 1484 C1' C B 71 beta 1479 1485 1482 1504 C1' U B 72 beta 1499 1505 1502 1524 C1' G B 73 beta 1519 1525 1522 1547 C1' C B 74 beta 1542 1548 1545 1567 C1' G B 75 beta 1562 1568 1565 1590 C1' G B 76 beta 1585 1591 1588 1613 C1' U B 77 beta 1608 1614 1611 1633 C1' C B 78 beta 1628 1634 1631 1653 C1' U B 79 beta 1648 1654 1651 1673 C1' U B 80 beta 1668 1674 1671 1693 C1' C B 81 beta 1688 1694 1691 1713 C1' C B 82 beta 1708 1714 1711 1733 C1' U B 83 beta 1728 1734 1731 1753 C1' G B 84 beta 1748 1754 1751 1776 C1' C B 85 beta 1771 1777 1774 1796 C1' G B 86 beta 1791 1797 1794 1819 C1' A B 87 beta 1814 1820 1817 1841 C1' C B 88 beta 1836 1842 1839 1861 C1' C B 89 beta 1856 1862 1859 1881 C1' G B 90 beta 1876 1882 1879 1904 C1' U B 91 beta 1899 1905 1902 1924 C1' U B 92 beta 1919 1925 1922 1944 C1' A B 93 beta 1939 1945 1942 1966 C1' G B 94 beta 1961 1967 1964 1989 C1' A B 95 beta 1984 1990 1987 2011 C1' G B 96 beta 2006 2012 2009 2034 C1' G B 97 beta 2029 2035 2032 2057 C1' A B 98 beta 2052 2058 2055 2079 C1' C B 99 beta 2074 2080 2077 2099 C1' U B 100 beta 2094 2100 2097 2119 C1' G B 101 beta 2114 2120 2117 2142 C1' G B 102 beta 2137 2143 2140 2165 C1' U B 103 2160 2163 2177 C1' A B 104 beta 2172 2178 2175 2199 C1' A B 105 beta 2194 2200 2197 2221 C1' A B 106 beta 2216 2222 2219 2243 C1' A B 107 beta 2238 2244 2241 2265 C1' C B 108 beta 2260 2266 2263 2285 C1' C B 109 beta 2280 2286 2283 2305 C1' A B 110 beta 2300 2306 2303 2327 C1' C B 111 beta 2322 2328 2325 2347 C1' A B 112 beta 2342 2348 2345 2369 C1' G B 113 beta 2364 2370 2367 2392 C1' G B 114 beta 2387 2393 2390 2415 C1' C B 115 beta 2410 2416 2413 2435 C1' G B 116 beta 2430 2436 2433 2458 C1' A B 117 beta 2453 2459 2456 2480 C1' C B 118 beta 2475 2481 2478 2500 C1' U B 119 beta 2495 2501 2498 2520 C1' G B 120 beta 2515 2521 2518 2543 C1' U B 121 beta 2538 2544 2541 2563 C1' G B 122 beta 2558 2564 2561 2586 C1' G B 123 beta 2581 2587 2584 2609 C1' C B 124 beta 2604 2610 2607 2629 C1' A B 125 beta 2624 2630 2627 2651 C1' U B 126 beta 2646 2652 2649 2671 C1' A B 127 beta 2666 2672 2669 2693 C1' G B 128 beta 2688 2694 2691 2716 C1' A B 129 beta 2711 2717 2714 2738 C1' G B 130 beta 2733 2739 2736 2761 C1' C B 131 beta 2756 2762 2759 2781 C1' A B 132 beta 2776 2782 2779 2803 C1' G B 133 beta 2798 2804 2801 2826 C1' U B 134 beta 2821 2827 2824 2846 C1' C B 135 beta 2841 2847 2844 2866 C1' C B 136 beta 2861 2867 2864 2886 C1' G B 137 beta 2881 2887 2884 2909 C1' G B 138 beta 2904 2910 2907 2932 C1' G B 139 beta 2927 2933 2930 2955 C1' C B 140 beta 2950 2956 2953 2975 C1' A B 141 beta 2970 2976 2973 2997 C1' G B 142 beta 2992 2998 2995 3020 C1' G B 143 beta 3015 3021 3018 3043 C1' A B 144 beta 3038 3044 3041 3068 C1' A23 B 145 beta 3063 3069 3066 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' A A 0 OK 9 5 8 29 C2' G A 1 OK 31 27 30 52 C2' C A 2 OK 54 50 53 72 C2' G A 3 OK 74 70 73 95 C2' C A 4 OK 97 93 96 115 C2' C A 5 OK 117 113 116 135 C2' U A 6 OK 137 133 136 147 C2' G A 7 OK 149 145 148 170 C2' G A 8 OK 172 168 171 193 C2' A A 9 OK 195 191 194 215 C2' C A 10 OK 217 213 216 235 C2' U A 11 OK 237 233 236 255 C2' U A 12 OK 257 253 256 275 C2' A A 13 OK 277 273 276 297 C2' A A 14 OK 299 295 298 319 C2' A A 15 OK 321 317 320 341 C2' G A 16 OK 343 339 342 364 C2' C A 17 OK 366 362 365 384 C2' C A 18 OK 386 382 385 404 C2' A A 19 OK 406 402 405 426 C2' U A 20 OK 428 424 427 447 C2' G B 23 OK 449 445 448 470 C2' G B 24 OK 472 468 471 493 C2' C B 25 OK 495 491 494 513 C2' U B 26 OK 515 511 514 533 C2' U B 27 OK 535 531 534 553 C2' U B 28 OK 555 551 554 573 C2' A B 29 OK 575 571 574 595 C2' A B 30 OK 597 593 596 617 C2' G B 31 OK 619 615 618 640 C2' U B 32 OK 642 638 641 660 C2' U B 33 OK 662 658 661 680 C2' G B 34 OK 682 678 681 703 C2' A B 35 OK 705 701 704 725 C2' C B 36 OK 727 723 726 745 C2' G B 37 OK 747 743 746 768 C2' A B 38 OK 770 766 769 790 C2' G B 39 OK 792 788 791 813 C2' G B 40 OK 815 811 814 836 C2' G B 41 OK 838 834 837 859 C2' C B 42 OK 861 857 860 879 C2' A B 43 OK 881 877 880 901 C2' G B 44 OK 903 899 902 924 C2' G B 45 OK 926 922 925 947 C2' G B 46 OK 949 945 948 970 C2' U B 47 OK 972 968 971 990 C2' U B 48 OK 992 988 991 1010 C2' U B 49 OK 1012 1008 1011 1030 C2' A B 50 OK 1032 1028 1031 1052 C2' U B 51 OK 1054 1050 1053 1072 C2' C B 52 OK 1074 1070 1073 1092 C2' G B 53 OK 1094 1090 1093 1115 C2' A B 54 OK 1117 1113 1116 1137 C2' G B 55 OK 1139 1135 1138 1160 C2' A B 56 OK 1162 1158 1161 1182 C2' C B 57 OK 1184 1180 1183 1202 C2' A B 58 OK 1204 1200 1203 1224 C2' U B 59 OK 1226 1222 1225 1244 C2' C B 60 OK 1246 1242 1245 1264 C2' G B 61 OK 1266 1262 1265 1287 C2' G B 62 OK 1289 1285 1288 1310 C2' C B 63 OK 1312 1308 1311 1330 C2' G B 64 OK 1332 1328 1331 1353 C2' G B 65 OK 1355 1351 1354 1376 C2' G B 66 OK 1378 1374 1377 1399 C2' U B 67 OK 1401 1397 1400 1419 C2' G B 68 OK 1421 1417 1420 1442 C2' C B 69 OK 1444 1440 1443 1462 C2' C B 70 OK 1464 1460 1463 1482 C2' C B 71 OK 1484 1480 1483 1502 C2' U B 72 OK 1504 1500 1503 1522 C2' G B 73 OK 1524 1520 1523 1545 C2' C B 74 OK 1547 1543 1546 1565 C2' G B 75 OK 1567 1563 1566 1588 C2' G B 76 OK 1590 1586 1589 1611 C2' U B 77 OK 1613 1609 1612 1631 C2' C B 78 OK 1633 1629 1632 1651 C2' U B 79 OK 1653 1649 1652 1671 C2' U B 80 OK 1673 1669 1672 1691 C2' C B 81 OK 1693 1689 1692 1711 C2' C B 82 OK 1713 1709 1712 1731 C2' U B 83 OK 1733 1729 1732 1751 C2' G B 84 OK 1753 1749 1752 1774 C2' C B 85 OK 1776 1772 1775 1794 C2' G B 86 OK 1796 1792 1795 1817 C2' A B 87 OK 1819 1815 1818 1839 C2' C B 88 OK 1841 1837 1840 1859 C2' C B 89 OK 1861 1857 1860 1879 C2' G B 90 OK 1881 1877 1880 1902 C2' U B 91 OK 1904 1900 1903 1922 C2' U B 92 OK 1924 1920 1923 1942 C2' A B 93 OK 1944 1940 1943 1964 C2' G B 94 OK 1966 1962 1965 1987 C2' A B 95 OK 1989 1985 1988 2009 C2' G B 96 OK 2011 2007 2010 2032 C2' G B 97 OK 2034 2030 2033 2055 C2' A B 98 OK 2057 2053 2056 2077 C2' C B 99 OK 2079 2075 2078 2097 C2' U B 100 OK 2099 2095 2098 2117 C2' G B 101 OK 2119 2115 2118 2140 C2' G B 102 OK 2142 2138 2141 2163 C2' U B 103 OK 2165 2161 2164 2175 C2' A B 104 OK 2177 2173 2176 2197 C2' A B 105 OK 2199 2195 2198 2219 C2' A B 106 OK 2221 2217 2220 2241 C2' A B 107 OK 2243 2239 2242 2263 C2' C B 108 OK 2265 2261 2264 2283 C2' C B 109 OK 2285 2281 2284 2303 C2' A B 110 OK 2305 2301 2304 2325 C2' C B 111 OK 2327 2323 2326 2345 C2' A B 112 OK 2347 2343 2346 2367 C2' G B 113 OK 2369 2365 2368 2390 C2' G B 114 OK 2392 2388 2391 2413 C2' C B 115 OK 2415 2411 2414 2433 C2' G B 116 OK 2435 2431 2434 2456 C2' A B 117 OK 2458 2454 2457 2478 C2' C B 118 OK 2480 2476 2479 2498 C2' U B 119 OK 2500 2496 2499 2518 C2' G B 120 OK 2520 2516 2519 2541 C2' U B 121 OK 2543 2539 2542 2561 C2' G B 122 OK 2563 2559 2562 2584 C2' G B 123 OK 2586 2582 2585 2607 C2' C B 124 OK 2609 2605 2608 2627 C2' A B 125 OK 2629 2625 2628 2649 C2' U B 126 OK 2651 2647 2650 2669 C2' A B 127 OK 2671 2667 2670 2691 C2' G B 128 OK 2693 2689 2692 2714 C2' A B 129 OK 2716 2712 2715 2736 C2' G B 130 OK 2738 2734 2737 2759 C2' C B 131 OK 2761 2757 2760 2779 C2' A B 132 OK 2781 2777 2780 2801 C2' G B 133 OK 2803 2799 2802 2824 C2' U B 134 OK 2826 2822 2825 2844 C2' C B 135 OK 2846 2842 2845 2864 C2' C B 136 OK 2866 2862 2865 2884 C2' G B 137 OK 2886 2882 2885 2907 C2' G B 138 OK 2909 2905 2908 2930 C2' G B 139 OK 2932 2928 2931 2953 C2' C B 140 OK 2955 2951 2954 2973 C2' A B 141 OK 2975 2971 2974 2995 C2' G B 142 OK 2997 2993 2996 3018 C2' G B 143 OK 3020 3016 3019 3041 C2' A B 144 OK 3043 3039 3042 3066 C2' A23 B 145 OK 3068 3064 3067 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' A A 0 OK 3 6 7 27 C3' G A 1 OK 25 28 29 50 C3' C A 2 OK 48 51 52 70 C3' G A 3 OK 68 71 72 93 C3' C A 4 OK 91 94 95 113 C3' C A 5 OK 111 114 115 133 C3' U A 6 OK 131 134 135 145 C3' G A 7 OK 143 146 147 168 C3' G A 8 OK 166 169 170 191 C3' A A 9 OK 189 192 193 213 C3' C A 10 OK 211 214 215 233 C3' U A 11 OK 231 234 235 253 C3' U A 12 OK 251 254 255 273 C3' A A 13 OK 271 274 275 295 C3' A A 14 OK 293 296 297 317 C3' A A 15 OK 315 318 319 339 C3' G A 16 OK 337 340 341 362 C3' C A 17 OK 360 363 364 382 C3' C A 18 OK 380 383 384 402 C3' A A 19 OK 400 403 404 424 C3' U A 20 OK 422 425 426 445 C3' G B 23 OK 443 446 447 468 C3' G B 24 OK 466 469 470 491 C3' C B 25 OK 489 492 493 511 C3' U B 26 OK 509 512 513 531 C3' U B 27 OK 529 532 533 551 C3' U B 28 OK 549 552 553 571 C3' A B 29 OK 569 572 573 593 C3' A B 30 OK 591 594 595 615 C3' G B 31 OK 613 616 617 638 C3' U B 32 OK 636 639 640 658 C3' U B 33 OK 656 659 660 678 C3' G B 34 OK 676 679 680 701 C3' A B 35 OK 699 702 703 723 C3' C B 36 OK 721 724 725 743 C3' G B 37 OK 741 744 745 766 C3' A B 38 OK 764 767 768 788 C3' G B 39 OK 786 789 790 811 C3' G B 40 OK 809 812 813 834 C3' G B 41 OK 832 835 836 857 C3' C B 42 OK 855 858 859 877 C3' A B 43 OK 875 878 879 899 C3' G B 44 OK 897 900 901 922 C3' G B 45 OK 920 923 924 945 C3' G B 46 OK 943 946 947 968 C3' U B 47 OK 966 969 970 988 C3' U B 48 OK 986 989 990 1008 C3' U B 49 OK 1006 1009 1010 1028 C3' A B 50 OK 1026 1029 1030 1050 C3' U B 51 OK 1048 1051 1052 1070 C3' C B 52 OK 1068 1071 1072 1090 C3' G B 53 OK 1088 1091 1092 1113 C3' A B 54 OK 1111 1114 1115 1135 C3' G B 55 OK 1133 1136 1137 1158 C3' A B 56 OK 1156 1159 1160 1180 C3' C B 57 OK 1178 1181 1182 1200 C3' A B 58 OK 1198 1201 1202 1222 C3' U B 59 OK 1220 1223 1224 1242 C3' C B 60 OK 1240 1243 1244 1262 C3' G B 61 OK 1260 1263 1264 1285 C3' G B 62 OK 1283 1286 1287 1308 C3' C B 63 OK 1306 1309 1310 1328 C3' G B 64 OK 1326 1329 1330 1351 C3' G B 65 OK 1349 1352 1353 1374 C3' G B 66 OK 1372 1375 1376 1397 C3' U B 67 OK 1395 1398 1399 1417 C3' G B 68 OK 1415 1418 1419 1440 C3' C B 69 OK 1438 1441 1442 1460 C3' C B 70 OK 1458 1461 1462 1480 C3' C B 71 OK 1478 1481 1482 1500 C3' U B 72 OK 1498 1501 1502 1520 C3' G B 73 OK 1518 1521 1522 1543 C3' C B 74 OK 1541 1544 1545 1563 C3' G B 75 OK 1561 1564 1565 1586 C3' G B 76 OK 1584 1587 1588 1609 C3' U B 77 OK 1607 1610 1611 1629 C3' C B 78 OK 1627 1630 1631 1649 C3' U B 79 OK 1647 1650 1651 1669 C3' U B 80 OK 1667 1670 1671 1689 C3' C B 81 OK 1687 1690 1691 1709 C3' C B 82 OK 1707 1710 1711 1729 C3' U B 83 OK 1727 1730 1731 1749 C3' G B 84 OK 1747 1750 1751 1772 C3' C B 85 OK 1770 1773 1774 1792 C3' G B 86 OK 1790 1793 1794 1815 C3' A B 87 OK 1813 1816 1817 1837 C3' C B 88 OK 1835 1838 1839 1857 C3' C B 89 OK 1855 1858 1859 1877 C3' G B 90 OK 1875 1878 1879 1900 C3' U B 91 OK 1898 1901 1902 1920 C3' U B 92 OK 1918 1921 1922 1940 C3' A B 93 OK 1938 1941 1942 1962 C3' G B 94 OK 1960 1963 1964 1985 C3' A B 95 OK 1983 1986 1987 2007 C3' G B 96 OK 2005 2008 2009 2030 C3' G B 97 OK 2028 2031 2032 2053 C3' A B 98 OK 2051 2054 2055 2075 C3' C B 99 OK 2073 2076 2077 2095 C3' U B 100 OK 2093 2096 2097 2115 C3' G B 101 OK 2113 2116 2117 2138 C3' G B 102 OK 2136 2139 2140 2161 C3' U B 103 OK 2159 2162 2163 2173 C3' A B 104 OK 2171 2174 2175 2195 C3' A B 105 OK 2193 2196 2197 2217 C3' A B 106 OK 2215 2218 2219 2239 C3' A B 107 OK 2237 2240 2241 2261 C3' C B 108 OK 2259 2262 2263 2281 C3' C B 109 OK 2279 2282 2283 2301 C3' A B 110 OK 2299 2302 2303 2323 C3' C B 111 OK 2321 2324 2325 2343 C3' A B 112 OK 2341 2344 2345 2365 C3' G B 113 OK 2363 2366 2367 2388 C3' G B 114 OK 2386 2389 2390 2411 C3' C B 115 OK 2409 2412 2413 2431 C3' G B 116 OK 2429 2432 2433 2454 C3' A B 117 OK 2452 2455 2456 2476 C3' C B 118 OK 2474 2477 2478 2496 C3' U B 119 OK 2494 2497 2498 2516 C3' G B 120 OK 2514 2517 2518 2539 C3' U B 121 OK 2537 2540 2541 2559 C3' G B 122 OK 2557 2560 2561 2582 C3' G B 123 OK 2580 2583 2584 2605 C3' C B 124 OK 2603 2606 2607 2625 C3' A B 125 OK 2623 2626 2627 2647 C3' U B 126 OK 2645 2648 2649 2667 C3' A B 127 OK 2665 2668 2669 2689 C3' G B 128 OK 2687 2690 2691 2712 C3' A B 129 OK 2710 2713 2714 2734 C3' G B 130 OK 2732 2735 2736 2757 C3' C B 131 OK 2755 2758 2759 2777 C3' A B 132 OK 2775 2778 2779 2799 C3' G B 133 OK 2797 2800 2801 2822 C3' U B 134 OK 2820 2823 2824 2842 C3' C B 135 OK 2840 2843 2844 2862 C3' C B 136 OK 2860 2863 2864 2882 C3' G B 137 OK 2880 2883 2884 2905 C3' G B 138 OK 2903 2906 2907 2928 C3' G B 139 OK 2926 2929 2930 2951 C3' C B 140 OK 2949 2952 2953 2971 C3' A B 141 OK 2969 2972 2973 2993 C3' G B 142 OK 2991 2994 2995 3016 C3' G B 143 OK 3014 3017 3018 3039 C3' A B 144 OK 3037 3040 3041 3064 C3' A23 B 145 OK 3062 3065 3066 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' A A 0 OK 5 2 4 25 C4' G A 1 OK 27 24 26 48 C4' C A 2 OK 50 47 49 68 C4' G A 3 OK 70 67 69 91 C4' C A 4 OK 93 90 92 111 C4' C A 5 OK 113 110 112 131 C4' U A 6 OK 133 130 132 143 C4' G A 7 OK 145 142 144 166 C4' G A 8 OK 168 165 167 189 C4' A A 9 OK 191 188 190 211 C4' C A 10 OK 213 210 212 231 C4' U A 11 OK 233 230 232 251 C4' U A 12 OK 253 250 252 271 C4' A A 13 OK 273 270 272 293 C4' A A 14 OK 295 292 294 315 C4' A A 15 OK 317 314 316 337 C4' G A 16 OK 339 336 338 360 C4' C A 17 OK 362 359 361 380 C4' C A 18 OK 382 379 381 400 C4' A A 19 OK 402 399 401 422 C4' U A 20 OK 424 421 423 443 C4' G B 23 OK 445 442 444 466 C4' G B 24 OK 468 465 467 489 C4' C B 25 OK 491 488 490 509 C4' U B 26 OK 511 508 510 529 C4' U B 27 OK 531 528 530 549 C4' U B 28 OK 551 548 550 569 C4' A B 29 OK 571 568 570 591 C4' A B 30 OK 593 590 592 613 C4' G B 31 OK 615 612 614 636 C4' U B 32 OK 638 635 637 656 C4' U B 33 OK 658 655 657 676 C4' G B 34 OK 678 675 677 699 C4' A B 35 OK 701 698 700 721 C4' C B 36 OK 723 720 722 741 C4' G B 37 OK 743 740 742 764 C4' A B 38 OK 766 763 765 786 C4' G B 39 OK 788 785 787 809 C4' G B 40 OK 811 808 810 832 C4' G B 41 OK 834 831 833 855 C4' C B 42 OK 857 854 856 875 C4' A B 43 OK 877 874 876 897 C4' G B 44 OK 899 896 898 920 C4' G B 45 OK 922 919 921 943 C4' G B 46 OK 945 942 944 966 C4' U B 47 OK 968 965 967 986 C4' U B 48 OK 988 985 987 1006 C4' U B 49 OK 1008 1005 1007 1026 C4' A B 50 OK 1028 1025 1027 1048 C4' U B 51 OK 1050 1047 1049 1068 C4' C B 52 OK 1070 1067 1069 1088 C4' G B 53 OK 1090 1087 1089 1111 C4' A B 54 OK 1113 1110 1112 1133 C4' G B 55 OK 1135 1132 1134 1156 C4' A B 56 OK 1158 1155 1157 1178 C4' C B 57 OK 1180 1177 1179 1198 C4' A B 58 OK 1200 1197 1199 1220 C4' U B 59 OK 1222 1219 1221 1240 C4' C B 60 OK 1242 1239 1241 1260 C4' G B 61 OK 1262 1259 1261 1283 C4' G B 62 OK 1285 1282 1284 1306 C4' C B 63 OK 1308 1305 1307 1326 C4' G B 64 OK 1328 1325 1327 1349 C4' G B 65 OK 1351 1348 1350 1372 C4' G B 66 OK 1374 1371 1373 1395 C4' U B 67 OK 1397 1394 1396 1415 C4' G B 68 OK 1417 1414 1416 1438 C4' C B 69 OK 1440 1437 1439 1458 C4' C B 70 OK 1460 1457 1459 1478 C4' C B 71 OK 1480 1477 1479 1498 C4' U B 72 OK 1500 1497 1499 1518 C4' G B 73 OK 1520 1517 1519 1541 C4' C B 74 OK 1543 1540 1542 1561 C4' G B 75 OK 1563 1560 1562 1584 C4' G B 76 OK 1586 1583 1585 1607 C4' U B 77 OK 1609 1606 1608 1627 C4' C B 78 OK 1629 1626 1628 1647 C4' U B 79 OK 1649 1646 1648 1667 C4' U B 80 OK 1669 1666 1668 1687 C4' C B 81 OK 1689 1686 1688 1707 C4' C B 82 OK 1709 1706 1708 1727 C4' U B 83 OK 1729 1726 1728 1747 C4' G B 84 OK 1749 1746 1748 1770 C4' C B 85 OK 1772 1769 1771 1790 C4' G B 86 OK 1792 1789 1791 1813 C4' A B 87 OK 1815 1812 1814 1835 C4' C B 88 OK 1837 1834 1836 1855 C4' C B 89 OK 1857 1854 1856 1875 C4' G B 90 OK 1877 1874 1876 1898 C4' U B 91 OK 1900 1897 1899 1918 C4' U B 92 OK 1920 1917 1919 1938 C4' A B 93 OK 1940 1937 1939 1960 C4' G B 94 OK 1962 1959 1961 1983 C4' A B 95 OK 1985 1982 1984 2005 C4' G B 96 OK 2007 2004 2006 2028 C4' G B 97 OK 2030 2027 2029 2051 C4' A B 98 OK 2053 2050 2052 2073 C4' C B 99 OK 2075 2072 2074 2093 C4' U B 100 OK 2095 2092 2094 2113 C4' G B 101 OK 2115 2112 2114 2136 C4' G B 102 OK 2138 2135 2137 2159 C4' U B 103 OK 2161 2158 2160 2171 C4' A B 104 OK 2173 2170 2172 2193 C4' A B 105 OK 2195 2192 2194 2215 C4' A B 106 OK 2217 2214 2216 2237 C4' A B 107 OK 2239 2236 2238 2259 C4' C B 108 OK 2261 2258 2260 2279 C4' C B 109 OK 2281 2278 2280 2299 C4' A B 110 OK 2301 2298 2300 2321 C4' C B 111 OK 2323 2320 2322 2341 C4' A B 112 OK 2343 2340 2342 2363 C4' G B 113 OK 2365 2362 2364 2386 C4' G B 114 OK 2388 2385 2387 2409 C4' C B 115 OK 2411 2408 2410 2429 C4' G B 116 OK 2431 2428 2430 2452 C4' A B 117 OK 2454 2451 2453 2474 C4' C B 118 OK 2476 2473 2475 2494 C4' U B 119 OK 2496 2493 2495 2514 C4' G B 120 OK 2516 2513 2515 2537 C4' U B 121 OK 2539 2536 2538 2557 C4' G B 122 OK 2559 2556 2558 2580 C4' G B 123 OK 2582 2579 2581 2603 C4' C B 124 OK 2605 2602 2604 2623 C4' A B 125 OK 2625 2622 2624 2645 C4' U B 126 OK 2647 2644 2646 2665 C4' A B 127 OK 2667 2664 2666 2687 C4' G B 128 OK 2689 2686 2688 2710 C4' A B 129 OK 2712 2709 2711 2732 C4' G B 130 OK 2734 2731 2733 2755 C4' C B 131 OK 2757 2754 2756 2775 C4' A B 132 OK 2777 2774 2776 2797 C4' G B 133 OK 2799 2796 2798 2820 C4' U B 134 OK 2822 2819 2821 2840 C4' C B 135 OK 2842 2839 2841 2860 C4' C B 136 OK 2862 2859 2861 2880 C4' G B 137 OK 2882 2879 2881 2903 C4' G B 138 OK 2905 2902 2904 2926 C4' G B 139 OK 2928 2925 2927 2949 C4' C B 140 OK 2951 2948 2950 2969 C4' A B 141 OK 2971 2968 2970 2991 C4' G B 142 OK 2993 2990 2992 3014 C4' G B 143 OK 3016 3013 3015 3037 C4' A B 144 OK 3039 3036 3038 3062 C4' A23 B 145 OK 3064 3061 3063 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' A A 0 1 3 24 C5' G A 1 23 25 47 C5' C A 2 46 48 67 C5' G A 3 66 68 90 C5' C A 4 89 91 110 C5' C A 5 109 111 130 C5' U A 6 129 131 142 C5' G A 7 141 143 165 C5' G A 8 164 166 188 C5' A A 9 187 189 210 C5' C A 10 209 211 230 C5' U A 11 229 231 250 C5' U A 12 249 251 270 C5' A A 13 269 271 292 C5' A A 14 291 293 314 C5' A A 15 313 315 336 C5' G A 16 335 337 359 C5' C A 17 358 360 379 C5' C A 18 378 380 399 C5' A A 19 398 400 421 C5' U A 20 420 422 442 C5' G B 23 441 443 465 C5' G B 24 464 466 488 C5' C B 25 487 489 508 C5' U B 26 507 509 528 C5' U B 27 527 529 548 C5' U B 28 547 549 568 C5' A B 29 567 569 590 C5' A B 30 589 591 612 C5' G B 31 611 613 635 C5' U B 32 634 636 655 C5' U B 33 654 656 675 C5' G B 34 674 676 698 C5' A B 35 697 699 720 C5' C B 36 719 721 740 C5' G B 37 739 741 763 C5' A B 38 762 764 785 C5' G B 39 784 786 808 C5' G B 40 807 809 831 C5' G B 41 830 832 854 C5' C B 42 853 855 874 C5' A B 43 873 875 896 C5' G B 44 895 897 919 C5' G B 45 918 920 942 C5' G B 46 941 943 965 C5' U B 47 964 966 985 C5' U B 48 984 986 1005 C5' U B 49 1004 1006 1025 C5' A B 50 1024 1026 1047 C5' U B 51 1046 1048 1067 C5' C B 52 1066 1068 1087 C5' G B 53 1086 1088 1110 C5' A B 54 1109 1111 1132 C5' G B 55 1131 1133 1155 C5' A B 56 1154 1156 1177 C5' C B 57 1176 1178 1197 C5' A B 58 1196 1198 1219 C5' U B 59 1218 1220 1239 C5' C B 60 1238 1240 1259 C5' G B 61 1258 1260 1282 C5' G B 62 1281 1283 1305 C5' C B 63 1304 1306 1325 C5' G B 64 1324 1326 1348 C5' G B 65 1347 1349 1371 C5' G B 66 1370 1372 1394 C5' U B 67 1393 1395 1414 C5' G B 68 1413 1415 1437 C5' C B 69 1436 1438 1457 C5' C B 70 1456 1458 1477 C5' C B 71 1476 1478 1497 C5' U B 72 1496 1498 1517 C5' G B 73 1516 1518 1540 C5' C B 74 1539 1541 1560 C5' G B 75 1559 1561 1583 C5' G B 76 1582 1584 1606 C5' U B 77 1605 1607 1626 C5' C B 78 1625 1627 1646 C5' U B 79 1645 1647 1666 C5' U B 80 1665 1667 1686 C5' C B 81 1685 1687 1706 C5' C B 82 1705 1707 1726 C5' U B 83 1725 1727 1746 C5' G B 84 1745 1747 1769 C5' C B 85 1768 1770 1789 C5' G B 86 1788 1790 1812 C5' A B 87 1811 1813 1834 C5' C B 88 1833 1835 1854 C5' C B 89 1853 1855 1874 C5' G B 90 1873 1875 1897 C5' U B 91 1896 1898 1917 C5' U B 92 1916 1918 1937 C5' A B 93 1936 1938 1959 C5' G B 94 1958 1960 1982 C5' A B 95 1981 1983 2004 C5' G B 96 2003 2005 2027 C5' G B 97 2026 2028 2050 C5' A B 98 2049 2051 2072 C5' C B 99 2071 2073 2092 C5' U B 100 2091 2093 2112 C5' G B 101 2111 2113 2135 C5' G B 102 2134 2136 2158 C5' U B 103 2157 2159 2170 C5' A B 104 2169 2171 2192 C5' A B 105 2191 2193 2214 C5' A B 106 2213 2215 2236 C5' A B 107 2235 2237 2258 C5' C B 108 2257 2259 2278 C5' C B 109 2277 2279 2298 C5' A B 110 2297 2299 2320 C5' C B 111 2319 2321 2340 C5' A B 112 2339 2341 2362 C5' G B 113 2361 2363 2385 C5' G B 114 2384 2386 2408 C5' C B 115 2407 2409 2428 C5' G B 116 2427 2429 2451 C5' A B 117 2450 2452 2473 C5' C B 118 2472 2474 2493 C5' U B 119 2492 2494 2513 C5' G B 120 2512 2514 2536 C5' U B 121 2535 2537 2556 C5' G B 122 2555 2557 2579 C5' G B 123 2578 2580 2602 C5' C B 124 2601 2603 2622 C5' A B 125 2621 2623 2644 C5' U B 126 2643 2645 2664 C5' A B 127 2663 2665 2686 C5' G B 128 2685 2687 2709 C5' A B 129 2708 2710 2731 C5' G B 130 2730 2732 2754 C5' C B 131 2753 2755 2774 C5' A B 132 2773 2775 2796 C5' G B 133 2795 2797 2819 C5' U B 134 2818 2820 2839 C5' C B 135 2838 2840 2859 C5' C B 136 2858 2860 2879 C5' G B 137 2878 2880 2902 C5' G B 138 2901 2903 2925 C5' G B 139 2924 2926 2948 C5' C B 140 2947 2949 2968 C5' A B 141 2967 2969 2990 C5' G B 142 2989 2991 3013 C5' G B 143 3012 3014 3036 C5' A B 144 3035 3037 3061 C5' A23 B 145 3060 3062 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 20 P G A 1 distorted distorted 6 21 22 23 43 P C A 2 distorted distorted 28 44 45 46 63 P G A 3 distorted distorted 51 64 65 66 86 P C A 4 distorted distorted 71 87 88 89 106 P C A 5 distorted distorted 94 107 108 109 126 P U A 6 distorted distorted 114 127 128 129 138 P G A 7 distorted distorted 134 139 140 141 161 P G A 8 distorted distorted 146 162 163 164 184 P A A 9 distorted distorted 169 185 186 187 206 P C A 10 distorted distorted 192 207 208 209 226 P U A 11 distorted distorted 214 227 228 229 246 P U A 12 distorted distorted 234 247 248 249 266 P A A 13 distorted distorted 254 267 268 269 288 P A A 14 distorted distorted 274 289 290 291 310 P A A 15 distorted distorted 296 311 312 313 332 P G A 16 distorted distorted 318 333 334 335 355 P C A 17 distorted distorted 340 356 357 358 375 P C A 18 distorted distorted 363 376 377 378 395 P A A 19 distorted distorted 383 396 397 398 417 P U A 20 distorted distorted 403 418 419 420 438 P G B 23 distorted distorted 439 440 441 461 P G B 24 distorted distorted 446 462 463 464 484 P C B 25 distorted distorted 469 485 486 487 504 P U B 26 distorted distorted 492 505 506 507 524 P U B 27 distorted distorted 512 525 526 527 544 P U B 28 distorted distorted 532 545 546 547 564 P A B 29 distorted distorted 552 565 566 567 586 P A B 30 distorted distorted 572 587 588 589 608 P G B 31 distorted distorted 594 609 610 611 631 P U B 32 distorted distorted 616 632 633 634 651 P U B 33 distorted distorted 639 652 653 654 671 P G B 34 distorted distorted 659 672 673 674 694 P A B 35 distorted distorted 679 695 696 697 716 P C B 36 distorted distorted 702 717 718 719 736 P G B 37 distorted distorted 724 737 738 739 759 P A B 38 distorted distorted 744 760 761 762 781 P G B 39 distorted distorted 767 782 783 784 804 P G B 40 distorted distorted 789 805 806 807 827 P G B 41 distorted distorted 812 828 829 830 850 P C B 42 distorted distorted 835 851 852 853 870 P A B 43 distorted distorted 858 871 872 873 892 P G B 44 distorted distorted 878 893 894 895 915 P G B 45 distorted distorted 900 916 917 918 938 P G B 46 distorted distorted 923 939 940 941 961 P U B 47 distorted distorted 946 962 963 964 981 P U B 48 distorted distorted 969 982 983 984 1001 P U B 49 distorted distorted 989 1002 1003 1004 1021 P A B 50 distorted distorted 1009 1022 1023 1024 1043 P U B 51 distorted distorted 1029 1044 1045 1046 1063 P C B 52 distorted distorted 1051 1064 1065 1066 1083 P G B 53 distorted distorted 1071 1084 1085 1086 1106 P A B 54 distorted distorted 1091 1107 1108 1109 1128 P G B 55 distorted distorted 1114 1129 1130 1131 1151 P A B 56 distorted distorted 1136 1152 1153 1154 1173 P C B 57 distorted distorted 1159 1174 1175 1176 1193 P A B 58 distorted distorted 1181 1194 1195 1196 1215 P U B 59 distorted distorted 1201 1216 1217 1218 1235 P C B 60 distorted distorted 1223 1236 1237 1238 1255 P G B 61 distorted distorted 1243 1256 1257 1258 1278 P G B 62 distorted distorted 1263 1279 1280 1281 1301 P C B 63 distorted distorted 1286 1302 1303 1304 1321 P G B 64 distorted distorted 1309 1322 1323 1324 1344 P G B 65 distorted distorted 1329 1345 1346 1347 1367 P G B 66 distorted distorted 1352 1368 1369 1370 1390 P U B 67 distorted distorted 1375 1391 1392 1393 1410 P G B 68 distorted distorted 1398 1411 1412 1413 1433 P C B 69 distorted distorted 1418 1434 1435 1436 1453 P C B 70 distorted distorted 1441 1454 1455 1456 1473 P C B 71 distorted distorted 1461 1474 1475 1476 1493 P U B 72 distorted distorted 1481 1494 1495 1496 1513 P G B 73 distorted distorted 1501 1514 1515 1516 1536 P C B 74 distorted distorted 1521 1537 1538 1539 1556 P G B 75 distorted distorted 1544 1557 1558 1559 1579 P G B 76 distorted distorted 1564 1580 1581 1582 1602 P U B 77 distorted distorted 1587 1603 1604 1605 1622 P C B 78 distorted distorted 1610 1623 1624 1625 1642 P U B 79 distorted distorted 1630 1643 1644 1645 1662 P U B 80 distorted distorted 1650 1663 1664 1665 1682 P C B 81 distorted distorted 1670 1683 1684 1685 1702 P C B 82 distorted distorted 1690 1703 1704 1705 1722 P U B 83 distorted distorted 1710 1723 1724 1725 1742 P G B 84 distorted distorted 1730 1743 1744 1745 1765 P C B 85 distorted distorted 1750 1766 1767 1768 1785 P G B 86 distorted distorted 1773 1786 1787 1788 1808 P A B 87 distorted distorted 1793 1809 1810 1811 1830 P C B 88 distorted distorted 1816 1831 1832 1833 1850 P C B 89 distorted distorted 1838 1851 1852 1853 1870 P G B 90 distorted distorted 1858 1871 1872 1873 1893 P U B 91 distorted distorted 1878 1894 1895 1896 1913 P U B 92 distorted distorted 1901 1914 1915 1916 1933 P A B 93 distorted distorted 1921 1934 1935 1936 1955 P G B 94 distorted distorted 1941 1956 1957 1958 1978 P A B 95 distorted distorted 1963 1979 1980 1981 2000 P G B 96 distorted distorted 1986 2001 2002 2003 2023 P G B 97 distorted distorted 2008 2024 2025 2026 2046 P A B 98 distorted distorted 2031 2047 2048 2049 2068 P C B 99 distorted distorted 2054 2069 2070 2071 2088 P U B 100 distorted distorted 2076 2089 2090 2091 2108 P G B 101 distorted distorted 2096 2109 2110 2111 2131 P G B 102 distorted distorted 2116 2132 2133 2134 2154 P U B 103 distorted distorted 2139 2155 2156 2157 2166 P A B 104 distorted distorted 2162 2167 2168 2169 2188 P A B 105 distorted distorted 2174 2189 2190 2191 2210 P A B 106 distorted distorted 2196 2211 2212 2213 2232 P A B 107 distorted distorted 2218 2233 2234 2235 2254 P C B 108 distorted distorted 2240 2255 2256 2257 2274 P C B 109 distorted distorted 2262 2275 2276 2277 2294 P A B 110 distorted distorted 2282 2295 2296 2297 2316 P C B 111 distorted distorted 2302 2317 2318 2319 2336 P A B 112 distorted distorted 2324 2337 2338 2339 2358 P G B 113 distorted distorted 2344 2359 2360 2361 2381 P G B 114 distorted distorted 2366 2382 2383 2384 2404 P C B 115 distorted distorted 2389 2405 2406 2407 2424 P G B 116 distorted distorted 2412 2425 2426 2427 2447 P A B 117 distorted distorted 2432 2448 2449 2450 2469 P C B 118 distorted distorted 2455 2470 2471 2472 2489 P U B 119 distorted distorted 2477 2490 2491 2492 2509 P G B 120 distorted distorted 2497 2510 2511 2512 2532 P U B 121 distorted distorted 2517 2533 2534 2535 2552 P G B 122 distorted distorted 2540 2553 2554 2555 2575 P G B 123 distorted distorted 2560 2576 2577 2578 2598 P C B 124 distorted distorted 2583 2599 2600 2601 2618 P A B 125 distorted distorted 2606 2619 2620 2621 2640 P U B 126 distorted distorted 2626 2641 2642 2643 2660 P A B 127 distorted distorted 2648 2661 2662 2663 2682 P G B 128 distorted distorted 2668 2683 2684 2685 2705 P A B 129 distorted distorted 2690 2706 2707 2708 2727 P G B 130 distorted distorted 2713 2728 2729 2730 2750 P C B 131 distorted distorted 2735 2751 2752 2753 2770 P A B 132 distorted distorted 2758 2771 2772 2773 2792 P G B 133 distorted distorted 2778 2793 2794 2795 2815 P U B 134 distorted distorted 2800 2816 2817 2818 2835 P C B 135 distorted distorted 2823 2836 2837 2838 2855 P C B 136 distorted distorted 2843 2856 2857 2858 2875 P G B 137 distorted distorted 2863 2876 2877 2878 2898 P G B 138 distorted distorted 2883 2899 2900 2901 2921 P G B 139 distorted distorted 2906 2922 2923 2924 2944 P C B 140 distorted distorted 2929 2945 2946 2947 2964 P A B 141 distorted distorted 2952 2965 2966 2967 2986 P G B 142 distorted distorted 2972 2987 2988 2989 3009 P G B 143 distorted distorted 2994 3010 3011 3012 3032 P A B 144 distorted distorted 3017 3033 3034 3035 3057 P A23 B 145 distorted distorted 3040 3058 3059 3060 3092 P G6P A 401 3093 3094 ---------------------------------------------------------------------------------