ID code: '2H0Z' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 8 C1' DA A 0 beta 4 9 7 30 C1' G A 1 beta 25 31 28 53 C1' C A 2 beta 48 54 51 73 C1' G A 3 beta 68 74 71 96 C1' C A 4 beta 91 97 94 116 C1' C A 5 beta 111 117 114 136 C1' U A 6 131 134 148 C1' G A 7 beta 143 149 146 171 C1' G A 8 beta 166 172 169 194 C1' A A 9 beta 189 195 192 216 C1' C A 10 beta 211 217 214 236 C1' U A 11 beta 231 237 234 256 C1' U A 12 beta 251 257 254 276 C1' A A 13 beta 271 277 274 298 C1' A A 14 beta 293 299 296 320 C1' A A 15 beta 315 321 318 342 C1' G A 16 beta 337 343 340 365 C1' C A 17 beta 360 366 363 385 C1' C A 18 beta 380 386 383 405 C1' A A 19 beta 400 406 403 427 C1' U A 20 beta 422 428 425 448 C1' G B 23 beta 443 449 446 471 C1' G B 24 beta 466 472 469 494 C1' C B 25 beta 489 495 492 514 C1' U B 26 beta 509 515 512 534 C1' U B 27 beta 529 535 532 554 C1' U B 28 beta 549 555 552 574 C1' A B 29 beta 569 575 572 596 C1' A B 30 beta 591 597 594 618 C1' G B 31 beta 613 619 616 641 C1' U B 32 beta 636 642 639 661 C1' U B 33 beta 656 662 659 681 C1' G B 34 beta 676 682 679 704 C1' A B 35 beta 699 705 702 726 C1' C B 36 beta 721 727 724 746 C1' G B 37 beta 741 747 744 769 C1' A B 38 beta 764 770 767 791 C1' G B 39 beta 786 792 789 814 C1' G B 40 beta 809 815 812 837 C1' G B 41 beta 832 838 835 860 C1' C B 42 beta 855 861 858 880 C1' A B 43 beta 875 881 878 902 C1' G B 44 beta 897 903 900 925 C1' G B 45 beta 920 926 923 948 C1' G B 46 beta 943 949 946 971 C1' U B 47 beta 966 972 969 991 C1' U B 48 beta 986 992 989 1011 C1' U B 49 beta 1006 1012 1009 1031 C1' A B 50 beta 1026 1032 1029 1053 C1' U B 51 beta 1048 1054 1051 1073 C1' C B 52 beta 1068 1074 1071 1093 C1' G B 53 beta 1088 1094 1091 1116 C1' A B 54 beta 1111 1117 1114 1138 C1' G B 55 beta 1133 1139 1136 1161 C1' A B 56 beta 1156 1162 1159 1183 C1' C B 57 beta 1178 1184 1181 1203 C1' A B 58 beta 1198 1204 1201 1225 C1' U B 59 beta 1220 1226 1223 1245 C1' C B 60 beta 1240 1246 1243 1265 C1' G B 61 beta 1260 1266 1263 1288 C1' G B 62 beta 1283 1289 1286 1311 C1' C B 63 beta 1306 1312 1309 1331 C1' G B 64 beta 1326 1332 1329 1354 C1' G B 65 beta 1349 1355 1352 1377 C1' G B 66 beta 1372 1378 1375 1400 C1' U B 67 beta 1395 1401 1398 1420 C1' G B 68 beta 1415 1421 1418 1443 C1' C B 69 beta 1438 1444 1441 1463 C1' C B 70 beta 1458 1464 1461 1483 C1' C B 71 beta 1478 1484 1481 1503 C1' U B 72 beta 1498 1504 1501 1523 C1' G B 73 beta 1518 1524 1521 1546 C1' C B 74 beta 1541 1547 1544 1566 C1' G B 75 beta 1561 1567 1564 1589 C1' G B 76 beta 1584 1590 1587 1612 C1' U B 77 beta 1607 1613 1610 1632 C1' C B 78 beta 1627 1633 1630 1652 C1' U B 79 beta 1647 1653 1650 1672 C1' U B 80 beta 1667 1673 1670 1692 C1' C B 81 beta 1687 1693 1690 1712 C1' C B 82 beta 1707 1713 1710 1732 C1' U B 83 beta 1727 1733 1730 1752 C1' G B 84 beta 1747 1753 1750 1775 C1' C B 85 beta 1770 1776 1773 1795 C1' G B 86 beta 1790 1796 1793 1818 C1' A B 87 beta 1813 1819 1816 1840 C1' C B 88 beta 1835 1841 1838 1860 C1' C B 89 beta 1855 1861 1858 1880 C1' G B 90 beta 1875 1881 1878 1903 C1' U B 91 beta 1898 1904 1901 1923 C1' U B 92 beta 1918 1924 1921 1943 C1' A B 93 beta 1938 1944 1941 1965 C1' G B 94 beta 1960 1966 1963 1988 C1' A B 95 beta 1983 1989 1986 2010 C1' G B 96 beta 2005 2011 2008 2033 C1' G B 97 beta 2028 2034 2031 2056 C1' A B 98 beta 2051 2057 2054 2078 C1' C B 99 beta 2073 2079 2076 2098 C1' U B 100 beta 2093 2099 2096 2118 C1' G B 101 beta 2113 2119 2116 2141 C1' G B 102 beta 2136 2142 2139 2164 C1' U B 103 2159 2162 2176 C1' A B 104 beta 2171 2177 2174 2198 C1' A B 105 beta 2193 2199 2196 2220 C1' A B 106 beta 2215 2221 2218 2242 C1' A B 107 beta 2237 2243 2240 2264 C1' C B 108 beta 2259 2265 2262 2284 C1' C B 109 beta 2279 2285 2282 2304 C1' A B 110 beta 2299 2305 2302 2326 C1' C B 111 beta 2321 2327 2324 2346 C1' A B 112 beta 2341 2347 2344 2368 C1' G B 113 beta 2363 2369 2366 2391 C1' G B 114 beta 2386 2392 2389 2414 C1' C B 115 beta 2409 2415 2412 2434 C1' G B 116 beta 2429 2435 2432 2457 C1' A B 117 beta 2452 2458 2455 2479 C1' C B 118 beta 2474 2480 2477 2499 C1' U B 119 beta 2494 2500 2497 2519 C1' G B 120 beta 2514 2520 2517 2542 C1' U B 121 beta 2537 2543 2540 2562 C1' G B 122 beta 2557 2563 2560 2585 C1' G B 123 beta 2580 2586 2583 2608 C1' C B 124 beta 2603 2609 2606 2628 C1' A B 125 beta 2623 2629 2626 2650 C1' U B 126 beta 2645 2651 2648 2670 C1' A B 127 beta 2665 2671 2668 2692 C1' G B 128 beta 2687 2693 2690 2715 C1' A B 129 beta 2710 2716 2713 2737 C1' G B 130 beta 2732 2738 2735 2760 C1' C B 131 beta 2755 2761 2758 2780 C1' A B 132 beta 2775 2781 2778 2802 C1' G B 133 beta 2797 2803 2800 2825 C1' U B 134 beta 2820 2826 2823 2845 C1' C B 135 beta 2840 2846 2843 2865 C1' C B 136 beta 2860 2866 2863 2885 C1' G B 137 beta 2880 2886 2883 2908 C1' G B 138 beta 2903 2909 2906 2931 C1' G B 139 beta 2926 2932 2929 2954 C1' C B 140 beta 2949 2955 2952 2974 C1' A B 141 beta 2969 2975 2972 2996 C1' G B 142 beta 2991 2997 2994 3019 C1' G B 143 beta 3014 3020 3017 3042 C1' A B 144 beta 3037 3043 3040 3064 C1' A B 145 beta 3059 3065 3062 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' DA A 0 8 5 28 C2' G A 1 OK 30 26 29 51 C2' C A 2 OK 53 49 52 71 C2' G A 3 OK 73 69 72 94 C2' C A 4 OK 96 92 95 114 C2' C A 5 OK 116 112 115 134 C2' U A 6 OK 136 132 135 146 C2' G A 7 OK 148 144 147 169 C2' G A 8 OK 171 167 170 192 C2' A A 9 OK 194 190 193 214 C2' C A 10 OK 216 212 215 234 C2' U A 11 OK 236 232 235 254 C2' U A 12 OK 256 252 255 274 C2' A A 13 OK 276 272 275 296 C2' A A 14 OK 298 294 297 318 C2' A A 15 OK 320 316 319 340 C2' G A 16 OK 342 338 341 363 C2' C A 17 OK 365 361 364 383 C2' C A 18 OK 385 381 384 403 C2' A A 19 OK 405 401 404 425 C2' U A 20 OK 427 423 426 446 C2' G B 23 OK 448 444 447 469 C2' G B 24 OK 471 467 470 492 C2' C B 25 OK 494 490 493 512 C2' U B 26 OK 514 510 513 532 C2' U B 27 OK 534 530 533 552 C2' U B 28 OK 554 550 553 572 C2' A B 29 OK 574 570 573 594 C2' A B 30 OK 596 592 595 616 C2' G B 31 OK 618 614 617 639 C2' U B 32 OK 641 637 640 659 C2' U B 33 OK 661 657 660 679 C2' G B 34 OK 681 677 680 702 C2' A B 35 OK 704 700 703 724 C2' C B 36 OK 726 722 725 744 C2' G B 37 OK 746 742 745 767 C2' A B 38 OK 769 765 768 789 C2' G B 39 OK 791 787 790 812 C2' G B 40 OK 814 810 813 835 C2' G B 41 OK 837 833 836 858 C2' C B 42 OK 860 856 859 878 C2' A B 43 OK 880 876 879 900 C2' G B 44 OK 902 898 901 923 C2' G B 45 OK 925 921 924 946 C2' G B 46 OK 948 944 947 969 C2' U B 47 OK 971 967 970 989 C2' U B 48 OK 991 987 990 1009 C2' U B 49 OK 1011 1007 1010 1029 C2' A B 50 OK 1031 1027 1030 1051 C2' U B 51 OK 1053 1049 1052 1071 C2' C B 52 OK 1073 1069 1072 1091 C2' G B 53 OK 1093 1089 1092 1114 C2' A B 54 OK 1116 1112 1115 1136 C2' G B 55 OK 1138 1134 1137 1159 C2' A B 56 OK 1161 1157 1160 1181 C2' C B 57 OK 1183 1179 1182 1201 C2' A B 58 OK 1203 1199 1202 1223 C2' U B 59 OK 1225 1221 1224 1243 C2' C B 60 OK 1245 1241 1244 1263 C2' G B 61 OK 1265 1261 1264 1286 C2' G B 62 OK 1288 1284 1287 1309 C2' C B 63 OK 1311 1307 1310 1329 C2' G B 64 OK 1331 1327 1330 1352 C2' G B 65 OK 1354 1350 1353 1375 C2' G B 66 OK 1377 1373 1376 1398 C2' U B 67 OK 1400 1396 1399 1418 C2' G B 68 OK 1420 1416 1419 1441 C2' C B 69 OK 1443 1439 1442 1461 C2' C B 70 OK 1463 1459 1462 1481 C2' C B 71 OK 1483 1479 1482 1501 C2' U B 72 OK 1503 1499 1502 1521 C2' G B 73 OK 1523 1519 1522 1544 C2' C B 74 OK 1546 1542 1545 1564 C2' G B 75 OK 1566 1562 1565 1587 C2' G B 76 OK 1589 1585 1588 1610 C2' U B 77 OK 1612 1608 1611 1630 C2' C B 78 OK 1632 1628 1631 1650 C2' U B 79 OK 1652 1648 1651 1670 C2' U B 80 OK 1672 1668 1671 1690 C2' C B 81 OK 1692 1688 1691 1710 C2' C B 82 OK 1712 1708 1711 1730 C2' U B 83 OK 1732 1728 1731 1750 C2' G B 84 OK 1752 1748 1751 1773 C2' C B 85 OK 1775 1771 1774 1793 C2' G B 86 OK 1795 1791 1794 1816 C2' A B 87 OK 1818 1814 1817 1838 C2' C B 88 OK 1840 1836 1839 1858 C2' C B 89 OK 1860 1856 1859 1878 C2' G B 90 OK 1880 1876 1879 1901 C2' U B 91 OK 1903 1899 1902 1921 C2' U B 92 OK 1923 1919 1922 1941 C2' A B 93 OK 1943 1939 1942 1963 C2' G B 94 OK 1965 1961 1964 1986 C2' A B 95 OK 1988 1984 1987 2008 C2' G B 96 OK 2010 2006 2009 2031 C2' G B 97 OK 2033 2029 2032 2054 C2' A B 98 OK 2056 2052 2055 2076 C2' C B 99 OK 2078 2074 2077 2096 C2' U B 100 OK 2098 2094 2097 2116 C2' G B 101 OK 2118 2114 2117 2139 C2' G B 102 OK 2141 2137 2140 2162 C2' U B 103 OK 2164 2160 2163 2174 C2' A B 104 OK 2176 2172 2175 2196 C2' A B 105 OK 2198 2194 2197 2218 C2' A B 106 OK 2220 2216 2219 2240 C2' A B 107 OK 2242 2238 2241 2262 C2' C B 108 OK 2264 2260 2263 2282 C2' C B 109 OK 2284 2280 2283 2302 C2' A B 110 OK 2304 2300 2303 2324 C2' C B 111 OK 2326 2322 2325 2344 C2' A B 112 OK 2346 2342 2345 2366 C2' G B 113 OK 2368 2364 2367 2389 C2' G B 114 OK 2391 2387 2390 2412 C2' C B 115 OK 2414 2410 2413 2432 C2' G B 116 OK 2434 2430 2433 2455 C2' A B 117 OK 2457 2453 2456 2477 C2' C B 118 OK 2479 2475 2478 2497 C2' U B 119 OK 2499 2495 2498 2517 C2' G B 120 OK 2519 2515 2518 2540 C2' U B 121 OK 2542 2538 2541 2560 C2' G B 122 OK 2562 2558 2561 2583 C2' G B 123 OK 2585 2581 2584 2606 C2' C B 124 OK 2608 2604 2607 2626 C2' A B 125 OK 2628 2624 2627 2648 C2' U B 126 OK 2650 2646 2649 2668 C2' A B 127 OK 2670 2666 2669 2690 C2' G B 128 OK 2692 2688 2691 2713 C2' A B 129 OK 2715 2711 2714 2735 C2' G B 130 OK 2737 2733 2736 2758 C2' C B 131 OK 2760 2756 2759 2778 C2' A B 132 OK 2780 2776 2779 2800 C2' G B 133 OK 2802 2798 2801 2823 C2' U B 134 OK 2825 2821 2824 2843 C2' C B 135 OK 2845 2841 2844 2863 C2' C B 136 OK 2865 2861 2864 2883 C2' G B 137 OK 2885 2881 2884 2906 C2' G B 138 OK 2908 2904 2907 2929 C2' G B 139 OK 2931 2927 2930 2952 C2' C B 140 OK 2954 2950 2953 2972 C2' A B 141 OK 2974 2970 2973 2994 C2' G B 142 OK 2996 2992 2995 3017 C2' G B 143 OK 3019 3015 3018 3040 C2' A B 144 OK 3042 3038 3041 3062 C2' A B 145 OK 3064 3060 3063 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' DA A 0 OK 3 6 7 26 C3' G A 1 OK 24 27 28 49 C3' C A 2 OK 47 50 51 69 C3' G A 3 OK 67 70 71 92 C3' C A 4 OK 90 93 94 112 C3' C A 5 OK 110 113 114 132 C3' U A 6 OK 130 133 134 144 C3' G A 7 OK 142 145 146 167 C3' G A 8 OK 165 168 169 190 C3' A A 9 OK 188 191 192 212 C3' C A 10 OK 210 213 214 232 C3' U A 11 OK 230 233 234 252 C3' U A 12 OK 250 253 254 272 C3' A A 13 OK 270 273 274 294 C3' A A 14 OK 292 295 296 316 C3' A A 15 OK 314 317 318 338 C3' G A 16 OK 336 339 340 361 C3' C A 17 OK 359 362 363 381 C3' C A 18 OK 379 382 383 401 C3' A A 19 OK 399 402 403 423 C3' U A 20 OK 421 424 425 444 C3' G B 23 OK 442 445 446 467 C3' G B 24 OK 465 468 469 490 C3' C B 25 OK 488 491 492 510 C3' U B 26 OK 508 511 512 530 C3' U B 27 OK 528 531 532 550 C3' U B 28 OK 548 551 552 570 C3' A B 29 OK 568 571 572 592 C3' A B 30 OK 590 593 594 614 C3' G B 31 OK 612 615 616 637 C3' U B 32 OK 635 638 639 657 C3' U B 33 OK 655 658 659 677 C3' G B 34 OK 675 678 679 700 C3' A B 35 OK 698 701 702 722 C3' C B 36 OK 720 723 724 742 C3' G B 37 OK 740 743 744 765 C3' A B 38 OK 763 766 767 787 C3' G B 39 OK 785 788 789 810 C3' G B 40 OK 808 811 812 833 C3' G B 41 OK 831 834 835 856 C3' C B 42 OK 854 857 858 876 C3' A B 43 OK 874 877 878 898 C3' G B 44 OK 896 899 900 921 C3' G B 45 OK 919 922 923 944 C3' G B 46 OK 942 945 946 967 C3' U B 47 OK 965 968 969 987 C3' U B 48 OK 985 988 989 1007 C3' U B 49 OK 1005 1008 1009 1027 C3' A B 50 OK 1025 1028 1029 1049 C3' U B 51 OK 1047 1050 1051 1069 C3' C B 52 OK 1067 1070 1071 1089 C3' G B 53 OK 1087 1090 1091 1112 C3' A B 54 OK 1110 1113 1114 1134 C3' G B 55 OK 1132 1135 1136 1157 C3' A B 56 OK 1155 1158 1159 1179 C3' C B 57 OK 1177 1180 1181 1199 C3' A B 58 OK 1197 1200 1201 1221 C3' U B 59 OK 1219 1222 1223 1241 C3' C B 60 OK 1239 1242 1243 1261 C3' G B 61 OK 1259 1262 1263 1284 C3' G B 62 OK 1282 1285 1286 1307 C3' C B 63 OK 1305 1308 1309 1327 C3' G B 64 OK 1325 1328 1329 1350 C3' G B 65 OK 1348 1351 1352 1373 C3' G B 66 OK 1371 1374 1375 1396 C3' U B 67 OK 1394 1397 1398 1416 C3' G B 68 OK 1414 1417 1418 1439 C3' C B 69 OK 1437 1440 1441 1459 C3' C B 70 OK 1457 1460 1461 1479 C3' C B 71 OK 1477 1480 1481 1499 C3' U B 72 OK 1497 1500 1501 1519 C3' G B 73 OK 1517 1520 1521 1542 C3' C B 74 OK 1540 1543 1544 1562 C3' G B 75 OK 1560 1563 1564 1585 C3' G B 76 OK 1583 1586 1587 1608 C3' U B 77 OK 1606 1609 1610 1628 C3' C B 78 OK 1626 1629 1630 1648 C3' U B 79 OK 1646 1649 1650 1668 C3' U B 80 OK 1666 1669 1670 1688 C3' C B 81 OK 1686 1689 1690 1708 C3' C B 82 OK 1706 1709 1710 1728 C3' U B 83 OK 1726 1729 1730 1748 C3' G B 84 OK 1746 1749 1750 1771 C3' C B 85 OK 1769 1772 1773 1791 C3' G B 86 OK 1789 1792 1793 1814 C3' A B 87 OK 1812 1815 1816 1836 C3' C B 88 OK 1834 1837 1838 1856 C3' C B 89 OK 1854 1857 1858 1876 C3' G B 90 OK 1874 1877 1878 1899 C3' U B 91 OK 1897 1900 1901 1919 C3' U B 92 OK 1917 1920 1921 1939 C3' A B 93 OK 1937 1940 1941 1961 C3' G B 94 OK 1959 1962 1963 1984 C3' A B 95 OK 1982 1985 1986 2006 C3' G B 96 OK 2004 2007 2008 2029 C3' G B 97 OK 2027 2030 2031 2052 C3' A B 98 OK 2050 2053 2054 2074 C3' C B 99 OK 2072 2075 2076 2094 C3' U B 100 OK 2092 2095 2096 2114 C3' G B 101 OK 2112 2115 2116 2137 C3' G B 102 OK 2135 2138 2139 2160 C3' U B 103 OK 2158 2161 2162 2172 C3' A B 104 OK 2170 2173 2174 2194 C3' A B 105 OK 2192 2195 2196 2216 C3' A B 106 OK 2214 2217 2218 2238 C3' A B 107 OK 2236 2239 2240 2260 C3' C B 108 OK 2258 2261 2262 2280 C3' C B 109 OK 2278 2281 2282 2300 C3' A B 110 OK 2298 2301 2302 2322 C3' C B 111 OK 2320 2323 2324 2342 C3' A B 112 OK 2340 2343 2344 2364 C3' G B 113 OK 2362 2365 2366 2387 C3' G B 114 OK 2385 2388 2389 2410 C3' C B 115 OK 2408 2411 2412 2430 C3' G B 116 OK 2428 2431 2432 2453 C3' A B 117 OK 2451 2454 2455 2475 C3' C B 118 OK 2473 2476 2477 2495 C3' U B 119 OK 2493 2496 2497 2515 C3' G B 120 OK 2513 2516 2517 2538 C3' U B 121 OK 2536 2539 2540 2558 C3' G B 122 OK 2556 2559 2560 2581 C3' G B 123 OK 2579 2582 2583 2604 C3' C B 124 OK 2602 2605 2606 2624 C3' A B 125 OK 2622 2625 2626 2646 C3' U B 126 OK 2644 2647 2648 2666 C3' A B 127 OK 2664 2667 2668 2688 C3' G B 128 OK 2686 2689 2690 2711 C3' A B 129 OK 2709 2712 2713 2733 C3' G B 130 OK 2731 2734 2735 2756 C3' C B 131 OK 2754 2757 2758 2776 C3' A B 132 OK 2774 2777 2778 2798 C3' G B 133 OK 2796 2799 2800 2821 C3' U B 134 OK 2819 2822 2823 2841 C3' C B 135 OK 2839 2842 2843 2861 C3' C B 136 OK 2859 2862 2863 2881 C3' G B 137 OK 2879 2882 2883 2904 C3' G B 138 OK 2902 2905 2906 2927 C3' G B 139 OK 2925 2928 2929 2950 C3' C B 140 OK 2948 2951 2952 2970 C3' A B 141 OK 2968 2971 2972 2992 C3' G B 142 OK 2990 2993 2994 3015 C3' G B 143 OK 3013 3016 3017 3038 C3' A B 144 OK 3036 3039 3040 3060 C3' A B 145 OK 3058 3061 3062 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' DA A 0 OK 5 2 4 24 C4' G A 1 OK 26 23 25 47 C4' C A 2 OK 49 46 48 67 C4' G A 3 OK 69 66 68 90 C4' C A 4 OK 92 89 91 110 C4' C A 5 OK 112 109 111 130 C4' U A 6 OK 132 129 131 142 C4' G A 7 OK 144 141 143 165 C4' G A 8 OK 167 164 166 188 C4' A A 9 OK 190 187 189 210 C4' C A 10 OK 212 209 211 230 C4' U A 11 OK 232 229 231 250 C4' U A 12 OK 252 249 251 270 C4' A A 13 OK 272 269 271 292 C4' A A 14 OK 294 291 293 314 C4' A A 15 OK 316 313 315 336 C4' G A 16 OK 338 335 337 359 C4' C A 17 OK 361 358 360 379 C4' C A 18 OK 381 378 380 399 C4' A A 19 OK 401 398 400 421 C4' U A 20 OK 423 420 422 442 C4' G B 23 OK 444 441 443 465 C4' G B 24 OK 467 464 466 488 C4' C B 25 OK 490 487 489 508 C4' U B 26 OK 510 507 509 528 C4' U B 27 OK 530 527 529 548 C4' U B 28 OK 550 547 549 568 C4' A B 29 OK 570 567 569 590 C4' A B 30 OK 592 589 591 612 C4' G B 31 OK 614 611 613 635 C4' U B 32 OK 637 634 636 655 C4' U B 33 OK 657 654 656 675 C4' G B 34 OK 677 674 676 698 C4' A B 35 OK 700 697 699 720 C4' C B 36 OK 722 719 721 740 C4' G B 37 OK 742 739 741 763 C4' A B 38 OK 765 762 764 785 C4' G B 39 OK 787 784 786 808 C4' G B 40 OK 810 807 809 831 C4' G B 41 OK 833 830 832 854 C4' C B 42 OK 856 853 855 874 C4' A B 43 OK 876 873 875 896 C4' G B 44 OK 898 895 897 919 C4' G B 45 OK 921 918 920 942 C4' G B 46 OK 944 941 943 965 C4' U B 47 OK 967 964 966 985 C4' U B 48 OK 987 984 986 1005 C4' U B 49 OK 1007 1004 1006 1025 C4' A B 50 OK 1027 1024 1026 1047 C4' U B 51 OK 1049 1046 1048 1067 C4' C B 52 OK 1069 1066 1068 1087 C4' G B 53 OK 1089 1086 1088 1110 C4' A B 54 OK 1112 1109 1111 1132 C4' G B 55 OK 1134 1131 1133 1155 C4' A B 56 OK 1157 1154 1156 1177 C4' C B 57 OK 1179 1176 1178 1197 C4' A B 58 OK 1199 1196 1198 1219 C4' U B 59 OK 1221 1218 1220 1239 C4' C B 60 OK 1241 1238 1240 1259 C4' G B 61 OK 1261 1258 1260 1282 C4' G B 62 OK 1284 1281 1283 1305 C4' C B 63 OK 1307 1304 1306 1325 C4' G B 64 OK 1327 1324 1326 1348 C4' G B 65 OK 1350 1347 1349 1371 C4' G B 66 OK 1373 1370 1372 1394 C4' U B 67 OK 1396 1393 1395 1414 C4' G B 68 OK 1416 1413 1415 1437 C4' C B 69 OK 1439 1436 1438 1457 C4' C B 70 OK 1459 1456 1458 1477 C4' C B 71 OK 1479 1476 1478 1497 C4' U B 72 OK 1499 1496 1498 1517 C4' G B 73 OK 1519 1516 1518 1540 C4' C B 74 OK 1542 1539 1541 1560 C4' G B 75 OK 1562 1559 1561 1583 C4' G B 76 OK 1585 1582 1584 1606 C4' U B 77 OK 1608 1605 1607 1626 C4' C B 78 OK 1628 1625 1627 1646 C4' U B 79 OK 1648 1645 1647 1666 C4' U B 80 OK 1668 1665 1667 1686 C4' C B 81 OK 1688 1685 1687 1706 C4' C B 82 OK 1708 1705 1707 1726 C4' U B 83 OK 1728 1725 1727 1746 C4' G B 84 OK 1748 1745 1747 1769 C4' C B 85 OK 1771 1768 1770 1789 C4' G B 86 OK 1791 1788 1790 1812 C4' A B 87 OK 1814 1811 1813 1834 C4' C B 88 OK 1836 1833 1835 1854 C4' C B 89 OK 1856 1853 1855 1874 C4' G B 90 OK 1876 1873 1875 1897 C4' U B 91 OK 1899 1896 1898 1917 C4' U B 92 OK 1919 1916 1918 1937 C4' A B 93 OK 1939 1936 1938 1959 C4' G B 94 OK 1961 1958 1960 1982 C4' A B 95 OK 1984 1981 1983 2004 C4' G B 96 OK 2006 2003 2005 2027 C4' G B 97 OK 2029 2026 2028 2050 C4' A B 98 OK 2052 2049 2051 2072 C4' C B 99 OK 2074 2071 2073 2092 C4' U B 100 OK 2094 2091 2093 2112 C4' G B 101 OK 2114 2111 2113 2135 C4' G B 102 OK 2137 2134 2136 2158 C4' U B 103 OK 2160 2157 2159 2170 C4' A B 104 OK 2172 2169 2171 2192 C4' A B 105 OK 2194 2191 2193 2214 C4' A B 106 OK 2216 2213 2215 2236 C4' A B 107 OK 2238 2235 2237 2258 C4' C B 108 OK 2260 2257 2259 2278 C4' C B 109 OK 2280 2277 2279 2298 C4' A B 110 OK 2300 2297 2299 2320 C4' C B 111 OK 2322 2319 2321 2340 C4' A B 112 OK 2342 2339 2341 2362 C4' G B 113 OK 2364 2361 2363 2385 C4' G B 114 OK 2387 2384 2386 2408 C4' C B 115 OK 2410 2407 2409 2428 C4' G B 116 OK 2430 2427 2429 2451 C4' A B 117 OK 2453 2450 2452 2473 C4' C B 118 OK 2475 2472 2474 2493 C4' U B 119 OK 2495 2492 2494 2513 C4' G B 120 OK 2515 2512 2514 2536 C4' U B 121 OK 2538 2535 2537 2556 C4' G B 122 OK 2558 2555 2557 2579 C4' G B 123 OK 2581 2578 2580 2602 C4' C B 124 OK 2604 2601 2603 2622 C4' A B 125 OK 2624 2621 2623 2644 C4' U B 126 OK 2646 2643 2645 2664 C4' A B 127 OK 2666 2663 2665 2686 C4' G B 128 OK 2688 2685 2687 2709 C4' A B 129 OK 2711 2708 2710 2731 C4' G B 130 OK 2733 2730 2732 2754 C4' C B 131 OK 2756 2753 2755 2774 C4' A B 132 OK 2776 2773 2775 2796 C4' G B 133 OK 2798 2795 2797 2819 C4' U B 134 OK 2821 2818 2820 2839 C4' C B 135 OK 2841 2838 2840 2859 C4' C B 136 OK 2861 2858 2860 2879 C4' G B 137 OK 2881 2878 2880 2902 C4' G B 138 OK 2904 2901 2903 2925 C4' G B 139 OK 2927 2924 2926 2948 C4' C B 140 OK 2950 2947 2949 2968 C4' A B 141 OK 2970 2967 2969 2990 C4' G B 142 OK 2992 2989 2991 3013 C4' G B 143 OK 3015 3012 3014 3036 C4' A B 144 OK 3038 3035 3037 3058 C4' A B 145 OK 3060 3057 3059 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' DA A 0 1 3 23 C5' G A 1 22 24 46 C5' C A 2 45 47 66 C5' G A 3 65 67 89 C5' C A 4 88 90 109 C5' C A 5 108 110 129 C5' U A 6 128 130 141 C5' G A 7 140 142 164 C5' G A 8 163 165 187 C5' A A 9 186 188 209 C5' C A 10 208 210 229 C5' U A 11 228 230 249 C5' U A 12 248 250 269 C5' A A 13 268 270 291 C5' A A 14 290 292 313 C5' A A 15 312 314 335 C5' G A 16 334 336 358 C5' C A 17 357 359 378 C5' C A 18 377 379 398 C5' A A 19 397 399 420 C5' U A 20 419 421 441 C5' G B 23 440 442 464 C5' G B 24 463 465 487 C5' C B 25 486 488 507 C5' U B 26 506 508 527 C5' U B 27 526 528 547 C5' U B 28 546 548 567 C5' A B 29 566 568 589 C5' A B 30 588 590 611 C5' G B 31 610 612 634 C5' U B 32 633 635 654 C5' U B 33 653 655 674 C5' G B 34 673 675 697 C5' A B 35 696 698 719 C5' C B 36 718 720 739 C5' G B 37 738 740 762 C5' A B 38 761 763 784 C5' G B 39 783 785 807 C5' G B 40 806 808 830 C5' G B 41 829 831 853 C5' C B 42 852 854 873 C5' A B 43 872 874 895 C5' G B 44 894 896 918 C5' G B 45 917 919 941 C5' G B 46 940 942 964 C5' U B 47 963 965 984 C5' U B 48 983 985 1004 C5' U B 49 1003 1005 1024 C5' A B 50 1023 1025 1046 C5' U B 51 1045 1047 1066 C5' C B 52 1065 1067 1086 C5' G B 53 1085 1087 1109 C5' A B 54 1108 1110 1131 C5' G B 55 1130 1132 1154 C5' A B 56 1153 1155 1176 C5' C B 57 1175 1177 1196 C5' A B 58 1195 1197 1218 C5' U B 59 1217 1219 1238 C5' C B 60 1237 1239 1258 C5' G B 61 1257 1259 1281 C5' G B 62 1280 1282 1304 C5' C B 63 1303 1305 1324 C5' G B 64 1323 1325 1347 C5' G B 65 1346 1348 1370 C5' G B 66 1369 1371 1393 C5' U B 67 1392 1394 1413 C5' G B 68 1412 1414 1436 C5' C B 69 1435 1437 1456 C5' C B 70 1455 1457 1476 C5' C B 71 1475 1477 1496 C5' U B 72 1495 1497 1516 C5' G B 73 1515 1517 1539 C5' C B 74 1538 1540 1559 C5' G B 75 1558 1560 1582 C5' G B 76 1581 1583 1605 C5' U B 77 1604 1606 1625 C5' C B 78 1624 1626 1645 C5' U B 79 1644 1646 1665 C5' U B 80 1664 1666 1685 C5' C B 81 1684 1686 1705 C5' C B 82 1704 1706 1725 C5' U B 83 1724 1726 1745 C5' G B 84 1744 1746 1768 C5' C B 85 1767 1769 1788 C5' G B 86 1787 1789 1811 C5' A B 87 1810 1812 1833 C5' C B 88 1832 1834 1853 C5' C B 89 1852 1854 1873 C5' G B 90 1872 1874 1896 C5' U B 91 1895 1897 1916 C5' U B 92 1915 1917 1936 C5' A B 93 1935 1937 1958 C5' G B 94 1957 1959 1981 C5' A B 95 1980 1982 2003 C5' G B 96 2002 2004 2026 C5' G B 97 2025 2027 2049 C5' A B 98 2048 2050 2071 C5' C B 99 2070 2072 2091 C5' U B 100 2090 2092 2111 C5' G B 101 2110 2112 2134 C5' G B 102 2133 2135 2157 C5' U B 103 2156 2158 2169 C5' A B 104 2168 2170 2191 C5' A B 105 2190 2192 2213 C5' A B 106 2212 2214 2235 C5' A B 107 2234 2236 2257 C5' C B 108 2256 2258 2277 C5' C B 109 2276 2278 2297 C5' A B 110 2296 2298 2319 C5' C B 111 2318 2320 2339 C5' A B 112 2338 2340 2361 C5' G B 113 2360 2362 2384 C5' G B 114 2383 2385 2407 C5' C B 115 2406 2408 2427 C5' G B 116 2426 2428 2450 C5' A B 117 2449 2451 2472 C5' C B 118 2471 2473 2492 C5' U B 119 2491 2493 2512 C5' G B 120 2511 2513 2535 C5' U B 121 2534 2536 2555 C5' G B 122 2554 2556 2578 C5' G B 123 2577 2579 2601 C5' C B 124 2600 2602 2621 C5' A B 125 2620 2622 2643 C5' U B 126 2642 2644 2663 C5' A B 127 2662 2664 2685 C5' G B 128 2684 2686 2708 C5' A B 129 2707 2709 2730 C5' G B 130 2729 2731 2753 C5' C B 131 2752 2754 2773 C5' A B 132 2772 2774 2795 C5' G B 133 2794 2796 2818 C5' U B 134 2817 2819 2838 C5' C B 135 2837 2839 2858 C5' C B 136 2857 2859 2878 C5' G B 137 2877 2879 2901 C5' G B 138 2900 2902 2924 C5' G B 139 2923 2925 2947 C5' C B 140 2946 2948 2967 C5' A B 141 2966 2968 2989 C5' G B 142 2988 2990 3012 C5' G B 143 3011 3013 3035 C5' A B 144 3034 3036 3057 C5' A B 145 3056 3058 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 19 P G A 1 distorted distorted 6 20 21 22 42 P C A 2 distorted distorted 27 43 44 45 62 P G A 3 distorted distorted 50 63 64 65 85 P C A 4 distorted distorted 70 86 87 88 105 P C A 5 distorted distorted 93 106 107 108 125 P U A 6 distorted distorted 113 126 127 128 137 P G A 7 distorted distorted 133 138 139 140 160 P G A 8 distorted distorted 145 161 162 163 183 P A A 9 distorted distorted 168 184 185 186 205 P C A 10 distorted distorted 191 206 207 208 225 P U A 11 distorted distorted 213 226 227 228 245 P U A 12 distorted distorted 233 246 247 248 265 P A A 13 distorted distorted 253 266 267 268 287 P A A 14 distorted distorted 273 288 289 290 309 P A A 15 distorted distorted 295 310 311 312 331 P G A 16 distorted distorted 317 332 333 334 354 P C A 17 distorted distorted 339 355 356 357 374 P C A 18 distorted distorted 362 375 376 377 394 P A A 19 distorted distorted 382 395 396 397 416 P U A 20 distorted distorted 402 417 418 419 437 P G B 23 distorted distorted 438 439 440 460 P G B 24 distorted distorted 445 461 462 463 483 P C B 25 distorted distorted 468 484 485 486 503 P U B 26 distorted distorted 491 504 505 506 523 P U B 27 distorted distorted 511 524 525 526 543 P U B 28 distorted distorted 531 544 545 546 563 P A B 29 distorted distorted 551 564 565 566 585 P A B 30 distorted distorted 571 586 587 588 607 P G B 31 distorted distorted 593 608 609 610 630 P U B 32 distorted distorted 615 631 632 633 650 P U B 33 distorted distorted 638 651 652 653 670 P G B 34 distorted distorted 658 671 672 673 693 P A B 35 distorted distorted 678 694 695 696 715 P C B 36 distorted distorted 701 716 717 718 735 P G B 37 distorted distorted 723 736 737 738 758 P A B 38 distorted distorted 743 759 760 761 780 P G B 39 distorted distorted 766 781 782 783 803 P G B 40 distorted distorted 788 804 805 806 826 P G B 41 distorted distorted 811 827 828 829 849 P C B 42 distorted distorted 834 850 851 852 869 P A B 43 distorted distorted 857 870 871 872 891 P G B 44 distorted distorted 877 892 893 894 914 P G B 45 distorted distorted 899 915 916 917 937 P G B 46 distorted distorted 922 938 939 940 960 P U B 47 distorted distorted 945 961 962 963 980 P U B 48 distorted distorted 968 981 982 983 1000 P U B 49 distorted distorted 988 1001 1002 1003 1020 P A B 50 distorted distorted 1008 1021 1022 1023 1042 P U B 51 distorted distorted 1028 1043 1044 1045 1062 P C B 52 distorted distorted 1050 1063 1064 1065 1082 P G B 53 distorted distorted 1070 1083 1084 1085 1105 P A B 54 distorted distorted 1090 1106 1107 1108 1127 P G B 55 distorted distorted 1113 1128 1129 1130 1150 P A B 56 distorted distorted 1135 1151 1152 1153 1172 P C B 57 distorted distorted 1158 1173 1174 1175 1192 P A B 58 distorted distorted 1180 1193 1194 1195 1214 P U B 59 distorted distorted 1200 1215 1216 1217 1234 P C B 60 distorted distorted 1222 1235 1236 1237 1254 P G B 61 distorted distorted 1242 1255 1256 1257 1277 P G B 62 distorted distorted 1262 1278 1279 1280 1300 P C B 63 distorted distorted 1285 1301 1302 1303 1320 P G B 64 distorted distorted 1308 1321 1322 1323 1343 P G B 65 distorted distorted 1328 1344 1345 1346 1366 P G B 66 distorted distorted 1351 1367 1368 1369 1389 P U B 67 distorted distorted 1374 1390 1391 1392 1409 P G B 68 distorted distorted 1397 1410 1411 1412 1432 P C B 69 distorted distorted 1417 1433 1434 1435 1452 P C B 70 distorted distorted 1440 1453 1454 1455 1472 P C B 71 distorted distorted 1460 1473 1474 1475 1492 P U B 72 distorted distorted 1480 1493 1494 1495 1512 P G B 73 distorted distorted 1500 1513 1514 1515 1535 P C B 74 distorted distorted 1520 1536 1537 1538 1555 P G B 75 distorted distorted 1543 1556 1557 1558 1578 P G B 76 distorted distorted 1563 1579 1580 1581 1601 P U B 77 distorted distorted 1586 1602 1603 1604 1621 P C B 78 distorted distorted 1609 1622 1623 1624 1641 P U B 79 distorted distorted 1629 1642 1643 1644 1661 P U B 80 distorted distorted 1649 1662 1663 1664 1681 P C B 81 distorted distorted 1669 1682 1683 1684 1701 P C B 82 distorted distorted 1689 1702 1703 1704 1721 P U B 83 distorted distorted 1709 1722 1723 1724 1741 P G B 84 distorted distorted 1729 1742 1743 1744 1764 P C B 85 distorted distorted 1749 1765 1766 1767 1784 P G B 86 distorted distorted 1772 1785 1786 1787 1807 P A B 87 distorted distorted 1792 1808 1809 1810 1829 P C B 88 distorted distorted 1815 1830 1831 1832 1849 P C B 89 distorted distorted 1837 1850 1851 1852 1869 P G B 90 distorted distorted 1857 1870 1871 1872 1892 P U B 91 distorted distorted 1877 1893 1894 1895 1912 P U B 92 distorted distorted 1900 1913 1914 1915 1932 P A B 93 distorted distorted 1920 1933 1934 1935 1954 P G B 94 distorted distorted 1940 1955 1956 1957 1977 P A B 95 distorted distorted 1962 1978 1979 1980 1999 P G B 96 distorted distorted 1985 2000 2001 2002 2022 P G B 97 distorted distorted 2007 2023 2024 2025 2045 P A B 98 distorted distorted 2030 2046 2047 2048 2067 P C B 99 distorted distorted 2053 2068 2069 2070 2087 P U B 100 distorted distorted 2075 2088 2089 2090 2107 P G B 101 distorted distorted 2095 2108 2109 2110 2130 P G B 102 distorted distorted 2115 2131 2132 2133 2153 P U B 103 distorted distorted 2138 2154 2155 2156 2165 P A B 104 distorted distorted 2161 2166 2167 2168 2187 P A B 105 distorted distorted 2173 2188 2189 2190 2209 P A B 106 distorted distorted 2195 2210 2211 2212 2231 P A B 107 distorted distorted 2217 2232 2233 2234 2253 P C B 108 distorted distorted 2239 2254 2255 2256 2273 P C B 109 distorted distorted 2261 2274 2275 2276 2293 P A B 110 distorted distorted 2281 2294 2295 2296 2315 P C B 111 distorted distorted 2301 2316 2317 2318 2335 P A B 112 distorted distorted 2323 2336 2337 2338 2357 P G B 113 distorted distorted 2343 2358 2359 2360 2380 P G B 114 distorted distorted 2365 2381 2382 2383 2403 P C B 115 distorted distorted 2388 2404 2405 2406 2423 P G B 116 distorted distorted 2411 2424 2425 2426 2446 P A B 117 distorted distorted 2431 2447 2448 2449 2468 P C B 118 distorted distorted 2454 2469 2470 2471 2488 P U B 119 distorted distorted 2476 2489 2490 2491 2508 P G B 120 distorted distorted 2496 2509 2510 2511 2531 P U B 121 distorted distorted 2516 2532 2533 2534 2551 P G B 122 distorted distorted 2539 2552 2553 2554 2574 P G B 123 distorted distorted 2559 2575 2576 2577 2597 P C B 124 distorted distorted 2582 2598 2599 2600 2617 P A B 125 distorted distorted 2605 2618 2619 2620 2639 P U B 126 distorted distorted 2625 2640 2641 2642 2659 P A B 127 distorted distorted 2647 2660 2661 2662 2681 P G B 128 distorted distorted 2667 2682 2683 2684 2704 P A B 129 distorted distorted 2689 2705 2706 2707 2726 P G B 130 distorted distorted 2712 2727 2728 2729 2749 P C B 131 distorted distorted 2734 2750 2751 2752 2769 P A B 132 distorted distorted 2757 2770 2771 2772 2791 P G B 133 distorted distorted 2777 2792 2793 2794 2814 P U B 134 distorted distorted 2799 2815 2816 2817 2834 P C B 135 distorted distorted 2822 2835 2836 2837 2854 P C B 136 distorted distorted 2842 2855 2856 2857 2874 P G B 137 distorted distorted 2862 2875 2876 2877 2897 P G B 138 distorted distorted 2882 2898 2899 2900 2920 P G B 139 distorted distorted 2905 2921 2922 2923 2943 P C B 140 distorted distorted 2928 2944 2945 2946 2963 P A B 141 distorted distorted 2951 2964 2965 2966 2985 P G B 142 distorted distorted 2971 2986 2987 2988 3008 P G B 143 distorted distorted 2993 3009 3010 3011 3031 P A B 144 distorted distorted 3016 3032 3033 3034 3053 P A B 145 distorted distorted 3039 3054 3055 3056 3088 P G6P A 301 3089 3090 ---------------------------------------------------------------------------------