ID code: '2GIS' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 beta 8 14 11 36 C1' G A 2 beta 31 37 34 59 C1' C A 3 beta 54 60 57 79 C1' U A 4 beta 74 80 77 99 C1' U A 5 beta 94 100 97 119 C1' A A 6 beta 114 120 117 141 C1' U A 7 beta 136 142 139 161 C1' C A 8 beta 156 162 159 181 C1' A A 9 beta 176 182 179 203 C1' A A 10 beta 198 204 201 225 C1' G A 11 beta 220 226 223 248 C1' A A 12 beta 243 249 246 270 C1' G A 13 beta 265 271 268 293 C1' A A 14 beta 288 294 291 315 C1' G A 15 beta 310 316 313 338 C1' G A 16 beta 333 339 336 361 C1' U A 17 beta 356 362 359 381 C1' G A 18 beta 376 382 379 404 C1' G A 19 beta 399 405 402 427 C1' A A 20 beta 422 428 425 449 C1' G A 21 beta 444 450 447 472 C1' G A 22 beta 467 473 470 495 C1' G A 23 beta 490 496 493 518 C1' A A 24 beta 513 519 516 540 C1' C A 25 beta 535 541 538 560 C1' U A 26 beta 555 561 558 580 C1' G A 27 beta 575 581 578 603 C1' G A 28 beta 598 604 601 626 C1' C A 29 beta 621 627 624 646 C1' C A 30 beta 641 647 644 666 C1' C A 31 beta 661 667 664 686 C1' G A 32 beta 681 687 684 709 C1' A A 33 beta 704 710 707 731 C1' U A 34 beta 726 732 729 751 C1' G A 35 beta 746 752 749 774 C1' A A 36 beta 769 775 772 796 C1' A A 37 beta 791 797 794 818 C1' A A 38 beta 813 819 816 840 C1' C A 39 beta 835 841 838 860 C1' C A 40 beta 855 861 858 880 C1' C A 41 beta 875 881 878 900 C1' G A 42 beta 895 901 898 923 C1' G A 43 beta 918 924 921 946 C1' C A 44 beta 941 947 944 966 C1' A A 45 beta 961 967 964 988 C1' A A 46 beta 983 989 986 1010 C1' C A 47 beta 1005 1011 1008 1030 C1' C A 48 beta 1025 1031 1028 1050 C1' A A 49 beta 1045 1051 1048 1072 C1' G A 50 beta 1067 1073 1070 1095 C1' A A 51 beta 1090 1096 1093 1117 C1' A A 52 beta 1112 1118 1115 1139 C1' A A 53 beta 1134 1140 1137 1161 C1' U A 54 beta 1156 1162 1159 1181 C1' G A 55 beta 1176 1182 1179 1204 C1' G A 56 beta 1199 1205 1202 1227 C1' U A 57 beta 1222 1228 1225 1247 C1' G A 58 beta 1242 1248 1245 1270 C1' C A 59 beta 1265 1271 1268 1290 C1' C A 60 beta 1285 1291 1288 1310 C1' A A 61 beta 1305 1311 1308 1332 C1' A A 62 beta 1327 1333 1330 1354 C1' U A 63 beta 1349 1355 1352 1374 C1' U A 64 beta 1369 1375 1372 1394 C1' C A 65 beta 1389 1395 1392 1414 C1' C A 66 beta 1409 1415 1412 1434 C1' U A 67 beta 1429 1435 1432 1454 C1' G A 68 beta 1449 1455 1452 1477 C1' C A 69 beta 1472 1478 1475 1497 C1' A A 70 beta 1492 1498 1495 1519 C1' G A 71 beta 1514 1520 1517 1542 C1' C A 72 beta 1537 1543 1540 1562 C1' G A 73 beta 1557 1563 1560 1585 C1' G A 74 beta 1580 1586 1583 1608 C1' A A 75 beta 1603 1609 1606 1630 C1' A A 76 beta 1625 1631 1628 1652 C1' A A 77 beta 1647 1653 1650 1674 C1' C A 78 beta 1669 1675 1672 1694 C1' G A 79 beta 1689 1695 1692 1717 C1' U A 80 beta 1712 1718 1715 1737 C1' U A 81 beta 1732 1738 1735 1757 C1' G A 82 beta 1752 1758 1755 1780 C1' A A 83 beta 1775 1781 1778 1802 C1' A A 84 beta 1797 1803 1800 1824 C1' A A 85 beta 1819 1825 1822 1846 C1' G A 86 beta 1841 1847 1844 1869 C1' A A 87 beta 1864 1870 1867 1891 C1' U A 88 beta 1886 1892 1889 1911 C1' G A 89 beta 1906 1912 1909 1934 C1' A A 90 beta 1929 1935 1932 1956 C1' G A 91 beta 1951 1957 1954 1979 C1' C A 92 beta 1974 1980 1977 1999 C1' C A 93 beta 1994 2000 1997 2019 C1' A A 94 beta 2014 2020 2017 2077 C1' SAM A 301 beta 2072 2078 2075 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK 13 9 12 34 C2' G A 2 OK 36 32 35 57 C2' C A 3 OK 59 55 58 77 C2' U A 4 OK 79 75 78 97 C2' U A 5 OK 99 95 98 117 C2' A A 6 OK 119 115 118 139 C2' U A 7 OK 141 137 140 159 C2' C A 8 OK 161 157 160 179 C2' A A 9 OK 181 177 180 201 C2' A A 10 OK 203 199 202 223 C2' G A 11 OK 225 221 224 246 C2' A A 12 OK 248 244 247 268 C2' G A 13 OK 270 266 269 291 C2' A A 14 OK 293 289 292 313 C2' G A 15 OK 315 311 314 336 C2' G A 16 OK 338 334 337 359 C2' U A 17 OK 361 357 360 379 C2' G A 18 OK 381 377 380 402 C2' G A 19 OK 404 400 403 425 C2' A A 20 OK 427 423 426 447 C2' G A 21 OK 449 445 448 470 C2' G A 22 OK 472 468 471 493 C2' G A 23 OK 495 491 494 516 C2' A A 24 OK 518 514 517 538 C2' C A 25 OK 540 536 539 558 C2' U A 26 OK 560 556 559 578 C2' G A 27 OK 580 576 579 601 C2' G A 28 OK 603 599 602 624 C2' C A 29 OK 626 622 625 644 C2' C A 30 OK 646 642 645 664 C2' C A 31 OK 666 662 665 684 C2' G A 32 OK 686 682 685 707 C2' A A 33 OK 709 705 708 729 C2' U A 34 OK 731 727 730 749 C2' G A 35 OK 751 747 750 772 C2' A A 36 OK 774 770 773 794 C2' A A 37 OK 796 792 795 816 C2' A A 38 OK 818 814 817 838 C2' C A 39 OK 840 836 839 858 C2' C A 40 OK 860 856 859 878 C2' C A 41 OK 880 876 879 898 C2' G A 42 OK 900 896 899 921 C2' G A 43 OK 923 919 922 944 C2' C A 44 OK 946 942 945 964 C2' A A 45 OK 966 962 965 986 C2' A A 46 OK 988 984 987 1008 C2' C A 47 OK 1010 1006 1009 1028 C2' C A 48 OK 1030 1026 1029 1048 C2' A A 49 OK 1050 1046 1049 1070 C2' G A 50 OK 1072 1068 1071 1093 C2' A A 51 OK 1095 1091 1094 1115 C2' A A 52 OK 1117 1113 1116 1137 C2' A A 53 OK 1139 1135 1138 1159 C2' U A 54 OK 1161 1157 1160 1179 C2' G A 55 OK 1181 1177 1180 1202 C2' G A 56 OK 1204 1200 1203 1225 C2' U A 57 OK 1227 1223 1226 1245 C2' G A 58 OK 1247 1243 1246 1268 C2' C A 59 OK 1270 1266 1269 1288 C2' C A 60 OK 1290 1286 1289 1308 C2' A A 61 OK 1310 1306 1309 1330 C2' A A 62 OK 1332 1328 1331 1352 C2' U A 63 OK 1354 1350 1353 1372 C2' U A 64 OK 1374 1370 1373 1392 C2' C A 65 OK 1394 1390 1393 1412 C2' C A 66 OK 1414 1410 1413 1432 C2' U A 67 OK 1434 1430 1433 1452 C2' G A 68 OK 1454 1450 1453 1475 C2' C A 69 OK 1477 1473 1476 1495 C2' A A 70 OK 1497 1493 1496 1517 C2' G A 71 OK 1519 1515 1518 1540 C2' C A 72 OK 1542 1538 1541 1560 C2' G A 73 OK 1562 1558 1561 1583 C2' G A 74 OK 1585 1581 1584 1606 C2' A A 75 OK 1608 1604 1607 1628 C2' A A 76 OK 1630 1626 1629 1650 C2' A A 77 OK 1652 1648 1651 1672 C2' C A 78 OK 1674 1670 1673 1692 C2' G A 79 OK 1694 1690 1693 1715 C2' U A 80 OK 1717 1713 1716 1735 C2' U A 81 OK 1737 1733 1736 1755 C2' G A 82 OK 1757 1753 1756 1778 C2' A A 83 OK 1780 1776 1779 1800 C2' A A 84 OK 1802 1798 1801 1822 C2' A A 85 OK 1824 1820 1823 1844 C2' G A 86 OK 1846 1842 1845 1867 C2' A A 87 OK 1869 1865 1868 1889 C2' U A 88 OK 1891 1887 1890 1909 C2' G A 89 OK 1911 1907 1910 1932 C2' A A 90 OK 1934 1930 1933 1954 C2' G A 91 OK 1956 1952 1955 1977 C2' C A 92 OK 1979 1975 1978 1997 C2' C A 93 OK 1999 1995 1998 2017 C2' A A 94 OK 2019 2015 2018 2075 C2' SAM A 301 OK 2077 2073 2076 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK 7 10 11 32 C3' G A 2 OK 30 33 34 55 C3' C A 3 OK 53 56 57 75 C3' U A 4 OK 73 76 77 95 C3' U A 5 OK 93 96 97 115 C3' A A 6 OK 113 116 117 137 C3' U A 7 OK 135 138 139 157 C3' C A 8 OK 155 158 159 177 C3' A A 9 OK 175 178 179 199 C3' A A 10 OK 197 200 201 221 C3' G A 11 OK 219 222 223 244 C3' A A 12 OK 242 245 246 266 C3' G A 13 OK 264 267 268 289 C3' A A 14 OK 287 290 291 311 C3' G A 15 OK 309 312 313 334 C3' G A 16 OK 332 335 336 357 C3' U A 17 OK 355 358 359 377 C3' G A 18 OK 375 378 379 400 C3' G A 19 OK 398 401 402 423 C3' A A 20 OK 421 424 425 445 C3' G A 21 OK 443 446 447 468 C3' G A 22 OK 466 469 470 491 C3' G A 23 OK 489 492 493 514 C3' A A 24 OK 512 515 516 536 C3' C A 25 OK 534 537 538 556 C3' U A 26 OK 554 557 558 576 C3' G A 27 OK 574 577 578 599 C3' G A 28 OK 597 600 601 622 C3' C A 29 OK 620 623 624 642 C3' C A 30 OK 640 643 644 662 C3' C A 31 OK 660 663 664 682 C3' G A 32 OK 680 683 684 705 C3' A A 33 OK 703 706 707 727 C3' U A 34 OK 725 728 729 747 C3' G A 35 OK 745 748 749 770 C3' A A 36 OK 768 771 772 792 C3' A A 37 OK 790 793 794 814 C3' A A 38 OK 812 815 816 836 C3' C A 39 OK 834 837 838 856 C3' C A 40 OK 854 857 858 876 C3' C A 41 OK 874 877 878 896 C3' G A 42 OK 894 897 898 919 C3' G A 43 OK 917 920 921 942 C3' C A 44 OK 940 943 944 962 C3' A A 45 OK 960 963 964 984 C3' A A 46 OK 982 985 986 1006 C3' C A 47 OK 1004 1007 1008 1026 C3' C A 48 OK 1024 1027 1028 1046 C3' A A 49 OK 1044 1047 1048 1068 C3' G A 50 OK 1066 1069 1070 1091 C3' A A 51 OK 1089 1092 1093 1113 C3' A A 52 OK 1111 1114 1115 1135 C3' A A 53 OK 1133 1136 1137 1157 C3' U A 54 OK 1155 1158 1159 1177 C3' G A 55 OK 1175 1178 1179 1200 C3' G A 56 OK 1198 1201 1202 1223 C3' U A 57 OK 1221 1224 1225 1243 C3' G A 58 OK 1241 1244 1245 1266 C3' C A 59 OK 1264 1267 1268 1286 C3' C A 60 OK 1284 1287 1288 1306 C3' A A 61 OK 1304 1307 1308 1328 C3' A A 62 OK 1326 1329 1330 1350 C3' U A 63 OK 1348 1351 1352 1370 C3' U A 64 OK 1368 1371 1372 1390 C3' C A 65 OK 1388 1391 1392 1410 C3' C A 66 OK 1408 1411 1412 1430 C3' U A 67 OK 1428 1431 1432 1450 C3' G A 68 OK 1448 1451 1452 1473 C3' C A 69 OK 1471 1474 1475 1493 C3' A A 70 OK 1491 1494 1495 1515 C3' G A 71 OK 1513 1516 1517 1538 C3' C A 72 OK 1536 1539 1540 1558 C3' G A 73 OK 1556 1559 1560 1581 C3' G A 74 OK 1579 1582 1583 1604 C3' A A 75 OK 1602 1605 1606 1626 C3' A A 76 OK 1624 1627 1628 1648 C3' A A 77 OK 1646 1649 1650 1670 C3' C A 78 OK 1668 1671 1672 1690 C3' G A 79 OK 1688 1691 1692 1713 C3' U A 80 OK 1711 1714 1715 1733 C3' U A 81 OK 1731 1734 1735 1753 C3' G A 82 OK 1751 1754 1755 1776 C3' A A 83 OK 1774 1777 1778 1798 C3' A A 84 OK 1796 1799 1800 1820 C3' A A 85 OK 1818 1821 1822 1842 C3' G A 86 OK 1840 1843 1844 1865 C3' A A 87 OK 1863 1866 1867 1887 C3' U A 88 OK 1885 1888 1889 1907 C3' G A 89 OK 1905 1908 1909 1930 C3' A A 90 OK 1928 1931 1932 1952 C3' G A 91 OK 1950 1953 1954 1975 C3' C A 92 OK 1973 1976 1977 1995 C3' C A 93 OK 1993 1996 1997 2015 C3' A A 94 OK 2013 2016 2017 2073 C3' SAM A 301 OK 2071 2074 2075 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK 9 6 8 30 C4' G A 2 OK 32 29 31 53 C4' C A 3 OK 55 52 54 73 C4' U A 4 OK 75 72 74 93 C4' U A 5 OK 95 92 94 113 C4' A A 6 OK 115 112 114 135 C4' U A 7 OK 137 134 136 155 C4' C A 8 OK 157 154 156 175 C4' A A 9 OK 177 174 176 197 C4' A A 10 OK 199 196 198 219 C4' G A 11 OK 221 218 220 242 C4' A A 12 OK 244 241 243 264 C4' G A 13 OK 266 263 265 287 C4' A A 14 OK 289 286 288 309 C4' G A 15 OK 311 308 310 332 C4' G A 16 OK 334 331 333 355 C4' U A 17 OK 357 354 356 375 C4' G A 18 OK 377 374 376 398 C4' G A 19 OK 400 397 399 421 C4' A A 20 OK 423 420 422 443 C4' G A 21 OK 445 442 444 466 C4' G A 22 OK 468 465 467 489 C4' G A 23 OK 491 488 490 512 C4' A A 24 OK 514 511 513 534 C4' C A 25 OK 536 533 535 554 C4' U A 26 OK 556 553 555 574 C4' G A 27 OK 576 573 575 597 C4' G A 28 OK 599 596 598 620 C4' C A 29 OK 622 619 621 640 C4' C A 30 OK 642 639 641 660 C4' C A 31 OK 662 659 661 680 C4' G A 32 OK 682 679 681 703 C4' A A 33 OK 705 702 704 725 C4' U A 34 OK 727 724 726 745 C4' G A 35 OK 747 744 746 768 C4' A A 36 OK 770 767 769 790 C4' A A 37 OK 792 789 791 812 C4' A A 38 OK 814 811 813 834 C4' C A 39 OK 836 833 835 854 C4' C A 40 OK 856 853 855 874 C4' C A 41 OK 876 873 875 894 C4' G A 42 OK 896 893 895 917 C4' G A 43 OK 919 916 918 940 C4' C A 44 OK 942 939 941 960 C4' A A 45 OK 962 959 961 982 C4' A A 46 OK 984 981 983 1004 C4' C A 47 OK 1006 1003 1005 1024 C4' C A 48 OK 1026 1023 1025 1044 C4' A A 49 OK 1046 1043 1045 1066 C4' G A 50 OK 1068 1065 1067 1089 C4' A A 51 OK 1091 1088 1090 1111 C4' A A 52 OK 1113 1110 1112 1133 C4' A A 53 OK 1135 1132 1134 1155 C4' U A 54 OK 1157 1154 1156 1175 C4' G A 55 OK 1177 1174 1176 1198 C4' G A 56 OK 1200 1197 1199 1221 C4' U A 57 OK 1223 1220 1222 1241 C4' G A 58 OK 1243 1240 1242 1264 C4' C A 59 OK 1266 1263 1265 1284 C4' C A 60 OK 1286 1283 1285 1304 C4' A A 61 OK 1306 1303 1305 1326 C4' A A 62 OK 1328 1325 1327 1348 C4' U A 63 OK 1350 1347 1349 1368 C4' U A 64 OK 1370 1367 1369 1388 C4' C A 65 OK 1390 1387 1389 1408 C4' C A 66 OK 1410 1407 1409 1428 C4' U A 67 OK 1430 1427 1429 1448 C4' G A 68 OK 1450 1447 1449 1471 C4' C A 69 OK 1473 1470 1472 1491 C4' A A 70 OK 1493 1490 1492 1513 C4' G A 71 OK 1515 1512 1514 1536 C4' C A 72 OK 1538 1535 1537 1556 C4' G A 73 OK 1558 1555 1557 1579 C4' G A 74 OK 1581 1578 1580 1602 C4' A A 75 OK 1604 1601 1603 1624 C4' A A 76 OK 1626 1623 1625 1646 C4' A A 77 OK 1648 1645 1647 1668 C4' C A 78 OK 1670 1667 1669 1688 C4' G A 79 OK 1690 1687 1689 1711 C4' U A 80 OK 1713 1710 1712 1731 C4' U A 81 OK 1733 1730 1732 1751 C4' G A 82 OK 1753 1750 1752 1774 C4' A A 83 OK 1776 1773 1775 1796 C4' A A 84 OK 1798 1795 1797 1818 C4' A A 85 OK 1820 1817 1819 1840 C4' G A 86 OK 1842 1839 1841 1863 C4' A A 87 OK 1865 1862 1864 1885 C4' U A 88 OK 1887 1884 1886 1905 C4' G A 89 OK 1907 1904 1906 1928 C4' A A 90 OK 1930 1927 1929 1950 C4' G A 91 OK 1952 1949 1951 1973 C4' C A 92 OK 1975 1972 1974 1993 C4' C A 93 OK 1995 1992 1994 2013 C4' A A 94 OK 2015 2012 2014 2071 C4' SAM A 301 OK 2073 2070 2072 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 5 7 29 C5' G A 2 28 30 52 C5' C A 3 51 53 72 C5' U A 4 71 73 92 C5' U A 5 91 93 112 C5' A A 6 111 113 134 C5' U A 7 133 135 154 C5' C A 8 153 155 174 C5' A A 9 173 175 196 C5' A A 10 195 197 218 C5' G A 11 217 219 241 C5' A A 12 240 242 263 C5' G A 13 262 264 286 C5' A A 14 285 287 308 C5' G A 15 307 309 331 C5' G A 16 330 332 354 C5' U A 17 353 355 374 C5' G A 18 373 375 397 C5' G A 19 396 398 420 C5' A A 20 419 421 442 C5' G A 21 441 443 465 C5' G A 22 464 466 488 C5' G A 23 487 489 511 C5' A A 24 510 512 533 C5' C A 25 532 534 553 C5' U A 26 552 554 573 C5' G A 27 572 574 596 C5' G A 28 595 597 619 C5' C A 29 618 620 639 C5' C A 30 638 640 659 C5' C A 31 658 660 679 C5' G A 32 678 680 702 C5' A A 33 701 703 724 C5' U A 34 723 725 744 C5' G A 35 743 745 767 C5' A A 36 766 768 789 C5' A A 37 788 790 811 C5' A A 38 810 812 833 C5' C A 39 832 834 853 C5' C A 40 852 854 873 C5' C A 41 872 874 893 C5' G A 42 892 894 916 C5' G A 43 915 917 939 C5' C A 44 938 940 959 C5' A A 45 958 960 981 C5' A A 46 980 982 1003 C5' C A 47 1002 1004 1023 C5' C A 48 1022 1024 1043 C5' A A 49 1042 1044 1065 C5' G A 50 1064 1066 1088 C5' A A 51 1087 1089 1110 C5' A A 52 1109 1111 1132 C5' A A 53 1131 1133 1154 C5' U A 54 1153 1155 1174 C5' G A 55 1173 1175 1197 C5' G A 56 1196 1198 1220 C5' U A 57 1219 1221 1240 C5' G A 58 1239 1241 1263 C5' C A 59 1262 1264 1283 C5' C A 60 1282 1284 1303 C5' A A 61 1302 1304 1325 C5' A A 62 1324 1326 1347 C5' U A 63 1346 1348 1367 C5' U A 64 1366 1368 1387 C5' C A 65 1386 1388 1407 C5' C A 66 1406 1408 1427 C5' U A 67 1426 1428 1447 C5' G A 68 1446 1448 1470 C5' C A 69 1469 1471 1490 C5' A A 70 1489 1491 1512 C5' G A 71 1511 1513 1535 C5' C A 72 1534 1536 1555 C5' G A 73 1554 1556 1578 C5' G A 74 1577 1579 1601 C5' A A 75 1600 1602 1623 C5' A A 76 1622 1624 1645 C5' A A 77 1644 1646 1667 C5' C A 78 1666 1668 1687 C5' G A 79 1686 1688 1710 C5' U A 80 1709 1711 1730 C5' U A 81 1729 1731 1750 C5' G A 82 1749 1751 1773 C5' A A 83 1772 1774 1795 C5' A A 84 1794 1796 1817 C5' A A 85 1816 1818 1839 C5' G A 86 1838 1840 1862 C5' A A 87 1861 1863 1884 C5' U A 88 1883 1885 1904 C5' G A 89 1903 1905 1927 C5' A A 90 1926 1928 1949 C5' G A 91 1948 1950 1972 C5' C A 92 1971 1973 1992 C5' C A 93 1991 1993 2012 C5' A A 94 2011 2013 2070 C5' SAM A 301 2071 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 OK OK 3 4 5 25 P G A 2 distorted distorted 10 26 27 28 48 P C A 3 distorted distorted 33 49 50 51 68 P U A 4 distorted distorted 56 69 70 71 88 P U A 5 distorted distorted 76 89 90 91 108 P A A 6 distorted distorted 96 109 110 111 130 P U A 7 distorted distorted 116 131 132 133 150 P C A 8 distorted distorted 138 151 152 153 170 P A A 9 distorted distorted 158 171 172 173 192 P A A 10 distorted distorted 178 193 194 195 214 P G A 11 distorted distorted 200 215 216 217 237 P A A 12 distorted distorted 222 238 239 240 259 P G A 13 distorted distorted 245 260 261 262 282 P A A 14 distorted distorted 267 283 284 285 304 P G A 15 distorted distorted 290 305 306 307 327 P G A 16 distorted distorted 312 328 329 330 350 P U A 17 distorted distorted 335 351 352 353 370 P G A 18 distorted distorted 358 371 372 373 393 P G A 19 distorted distorted 378 394 395 396 416 P A A 20 distorted distorted 401 417 418 419 438 P G A 21 distorted distorted 424 439 440 441 461 P G A 22 distorted distorted 446 462 463 464 484 P G A 23 distorted distorted 469 485 486 487 507 P A A 24 distorted distorted 492 508 509 510 529 P C A 25 distorted distorted 515 530 531 532 549 P U A 26 distorted distorted 537 550 551 552 569 P G A 27 distorted distorted 557 570 571 572 592 P G A 28 distorted distorted 577 593 594 595 615 P C A 29 distorted distorted 600 616 617 618 635 P C A 30 distorted distorted 623 636 637 638 655 P C A 31 distorted distorted 643 656 657 658 675 P G A 32 distorted distorted 663 676 677 678 698 P A A 33 distorted distorted 683 699 700 701 720 P U A 34 distorted distorted 706 721 722 723 740 P G A 35 distorted distorted 728 741 742 743 763 P A A 36 distorted distorted 748 764 765 766 785 P A A 37 distorted distorted 771 786 787 788 807 P A A 38 distorted distorted 793 808 809 810 829 P C A 39 distorted distorted 815 830 831 832 849 P C A 40 distorted distorted 837 850 851 852 869 P C A 41 distorted distorted 857 870 871 872 889 P G A 42 distorted distorted 877 890 891 892 912 P G A 43 distorted distorted 897 913 914 915 935 P C A 44 distorted distorted 920 936 937 938 955 P A A 45 distorted distorted 943 956 957 958 977 P A A 46 distorted distorted 963 978 979 980 999 P C A 47 distorted distorted 985 1000 1001 1002 1019 P C A 48 distorted distorted 1007 1020 1021 1022 1039 P A A 49 distorted distorted 1027 1040 1041 1042 1061 P G A 50 distorted distorted 1047 1062 1063 1064 1084 P A A 51 distorted distorted 1069 1085 1086 1087 1106 P A A 52 distorted distorted 1092 1107 1108 1109 1128 P A A 53 distorted distorted 1114 1129 1130 1131 1150 P U A 54 distorted distorted 1136 1151 1152 1153 1170 P G A 55 distorted distorted 1158 1171 1172 1173 1193 P G A 56 distorted distorted 1178 1194 1195 1196 1216 P U A 57 distorted distorted 1201 1217 1218 1219 1236 P G A 58 distorted distorted 1224 1237 1238 1239 1259 P C A 59 distorted distorted 1244 1260 1261 1262 1279 P C A 60 distorted distorted 1267 1280 1281 1282 1299 P A A 61 distorted distorted 1287 1300 1301 1302 1321 P A A 62 distorted distorted 1307 1322 1323 1324 1343 P U A 63 distorted distorted 1329 1344 1345 1346 1363 P U A 64 distorted distorted 1351 1364 1365 1366 1383 P C A 65 distorted distorted 1371 1384 1385 1386 1403 P C A 66 distorted distorted 1391 1404 1405 1406 1423 P U A 67 distorted distorted 1411 1424 1425 1426 1443 P G A 68 distorted distorted 1431 1444 1445 1446 1466 P C A 69 distorted distorted 1451 1467 1468 1469 1486 P A A 70 distorted distorted 1474 1487 1488 1489 1508 P G A 71 distorted distorted 1494 1509 1510 1511 1531 P C A 72 distorted distorted 1516 1532 1533 1534 1551 P G A 73 distorted distorted 1539 1552 1553 1554 1574 P G A 74 distorted distorted 1559 1575 1576 1577 1597 P A A 75 distorted distorted 1582 1598 1599 1600 1619 P A A 76 distorted distorted 1605 1620 1621 1622 1641 P A A 77 distorted distorted 1627 1642 1643 1644 1663 P C A 78 distorted distorted 1649 1664 1665 1666 1683 P G A 79 distorted distorted 1671 1684 1685 1686 1706 P U A 80 distorted distorted 1691 1707 1708 1709 1726 P U A 81 distorted distorted 1714 1727 1728 1729 1746 P G A 82 distorted distorted 1734 1747 1748 1749 1769 P A A 83 distorted distorted 1754 1770 1771 1772 1791 P A A 84 distorted distorted 1777 1792 1793 1794 1813 P A A 85 distorted distorted 1799 1814 1815 1816 1835 P G A 86 distorted distorted 1821 1836 1837 1838 1858 P A A 87 distorted distorted 1843 1859 1860 1861 1880 P U A 88 distorted distorted 1866 1881 1882 1883 1900 P G A 89 distorted distorted 1888 1901 1902 1903 1923 P A A 90 distorted distorted 1908 1924 1925 1926 1945 P G A 91 distorted distorted 1931 1946 1947 1948 1968 P C A 92 distorted distorted 1953 1969 1970 1971 1988 P C A 93 distorted distorted 1976 1989 1990 1991 2008 P A A 94 distorted distorted 1996 2009 2010 2011 ---------------------------------------------------------------------------------