ID code: '2DEU' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G C 1 beta 8 14 11 36 C1' U C 2 beta 31 37 34 56 C1' C C 3 beta 51 57 54 76 C1' C C 4 beta 71 77 74 96 C1' C C 5 beta 91 97 94 116 C1' C C 6 beta 111 117 114 136 C1' U C 7 beta 131 137 134 156 C1' U C 8 beta 151 157 154 176 C1' C C 9 beta 171 177 174 196 C1' G C 10 beta 191 197 194 219 C1' U C 11 beta 214 220 217 239 C1' C C 12 beta 234 240 237 259 C1' U C 13 beta 254 260 257 279 C1' A C 14 beta 274 280 277 301 C1' G C 15 beta 296 302 299 324 C1' A C 16 beta 319 325 322 346 C1' G C 17 beta 341 347 344 369 C1' G C 18 beta 364 370 367 392 C1' C C 19 beta 387 393 390 412 C1' C C 20 beta 407 413 410 432 C1' C C 20 beta 427 433 430 452 C1' A C 21 beta 447 453 450 474 C1' G C 22 beta 469 475 472 497 C1' G C 23 beta 492 498 495 520 C1' A C 24 beta 515 521 518 542 C1' C C 25 beta 537 543 540 562 C1' A C 26 beta 557 563 560 584 C1' C C 27 beta 579 585 582 604 C1' C C 28 beta 599 605 602 624 C1' G C 29 beta 619 625 622 647 C1' C C 30 beta 642 648 645 667 C1' C C 31 beta 662 668 665 687 C1' C C 32 beta 682 688 685 707 C1' U C 33 beta 702 708 705 727 C1' U C 34 beta 722 728 725 747 C1' U C 35 beta 742 748 745 767 C1' C C 36 beta 762 768 765 787 C1' A C 37 beta 782 788 785 809 C1' C C 38 beta 804 810 807 829 C1' G C 39 beta 824 830 827 852 C1' G C 40 beta 847 853 850 875 C1' C C 41 beta 870 876 873 895 C1' G C 42 beta 890 896 893 918 C1' G C 43 beta 913 919 916 941 C1' U C 44 beta 936 942 939 961 C1' A C 45 beta 956 962 959 983 C1' A C 46 beta 978 984 981 1005 C1' C C 47 beta 1000 1006 1003 1025 C1' A C 49 beta 1020 1026 1023 1047 C1' G C 50 beta 1042 1048 1045 1070 C1' G C 51 beta 1065 1071 1068 1093 C1' G C 52 beta 1088 1094 1091 1116 C1' G C 53 beta 1111 1117 1114 1139 C1' U C 54 beta 1134 1140 1137 1159 C1' U C 55 beta 1154 1160 1157 1179 C1' C C 56 beta 1174 1180 1177 1199 C1' G C 57 beta 1194 1200 1197 1222 C1' A C 58 beta 1217 1223 1220 1244 C1' A C 59 beta 1239 1245 1242 1266 C1' U C 60 beta 1261 1267 1264 1286 C1' C C 61 beta 1281 1287 1284 1306 C1' C C 62 beta 1301 1307 1304 1326 C1' C C 63 beta 1321 1327 1324 1346 C1' C C 64 beta 1341 1347 1344 1366 C1' U C 65 beta 1361 1367 1364 1386 C1' A C 66 beta 1381 1387 1384 1408 C1' G C 67 beta 1403 1409 1406 1431 C1' G C 68 beta 1426 1432 1429 1454 C1' G C 69 beta 1449 1455 1452 1477 C1' G C 70 beta 1472 1478 1475 1500 C1' A C 71 beta 1495 1501 1498 1522 C1' C C 72 beta 1517 1523 1520 1542 C1' G C 73 beta 1537 1543 1540 1565 C1' C C 74 beta 1560 1566 1563 1587 C1' G D 1 beta 1582 1588 1585 1610 C1' U D 2 beta 1605 1611 1608 1630 C1' C D 3 beta 1625 1631 1628 1650 C1' C D 4 beta 1645 1651 1648 1670 C1' C D 5 beta 1665 1671 1668 1690 C1' C D 6 beta 1685 1691 1688 1710 C1' U D 7 beta 1705 1711 1708 1730 C1' U D 8 beta 1725 1731 1728 1750 C1' C D 9 beta 1745 1751 1748 1770 C1' G D 10 beta 1765 1771 1768 1793 C1' U D 11 beta 1788 1794 1791 1813 C1' C D 12 beta 1808 1814 1811 1833 C1' U D 13 beta 1828 1834 1831 1853 C1' A D 14 beta 1848 1854 1851 1875 C1' G D 15 beta 1870 1876 1873 1898 C1' A D 16 beta 1893 1899 1896 1920 C1' G D 17 beta 1915 1921 1918 1943 C1' G D 18 beta 1938 1944 1941 1966 C1' C D 19 beta 1961 1967 1964 1986 C1' C D 20 beta 1981 1987 1984 2006 C1' C D 20 beta 2001 2007 2004 2026 C1' A D 21 beta 2021 2027 2024 2048 C1' G D 22 beta 2043 2049 2046 2071 C1' G D 23 beta 2066 2072 2069 2094 C1' A D 24 beta 2089 2095 2092 2116 C1' C D 25 beta 2111 2117 2114 2136 C1' A D 26 beta 2131 2137 2134 2158 C1' C D 27 beta 2153 2159 2156 2178 C1' C D 28 beta 2173 2179 2176 2198 C1' G D 29 beta 2193 2199 2196 2221 C1' C D 30 beta 2216 2222 2219 2241 C1' C D 31 beta 2236 2242 2239 2261 C1' C D 32 beta 2256 2262 2259 2281 C1' U D 33 beta 2276 2282 2279 2301 C1' U D 34 beta 2296 2302 2299 2321 C1' U D 35 beta 2316 2322 2319 2341 C1' C D 36 beta 2336 2342 2339 2361 C1' A D 37 beta 2356 2362 2359 2383 C1' C D 38 beta 2378 2384 2381 2403 C1' G D 39 beta 2398 2404 2401 2426 C1' G D 40 beta 2421 2427 2424 2449 C1' C D 41 beta 2444 2450 2447 2469 C1' G D 42 beta 2464 2470 2467 2492 C1' G D 43 beta 2487 2493 2490 2515 C1' U D 44 beta 2510 2516 2513 2535 C1' A D 45 beta 2530 2536 2533 2557 C1' A D 46 beta 2552 2558 2555 2579 C1' C D 47 beta 2574 2580 2577 2599 C1' A D 49 beta 2594 2600 2597 2621 C1' G D 50 beta 2616 2622 2619 2644 C1' G D 51 beta 2639 2645 2642 2667 C1' G D 52 beta 2662 2668 2665 2690 C1' G D 53 beta 2685 2691 2688 2713 C1' U D 54 beta 2708 2714 2711 2733 C1' U D 55 beta 2728 2734 2731 2753 C1' C D 56 beta 2748 2754 2751 2773 C1' G D 57 beta 2768 2774 2771 2796 C1' A D 58 beta 2791 2797 2794 2818 C1' A D 59 beta 2813 2819 2816 2840 C1' U D 60 beta 2835 2841 2838 2860 C1' C D 61 beta 2855 2861 2858 2880 C1' C D 62 beta 2875 2881 2878 2900 C1' C D 63 beta 2895 2901 2898 2920 C1' C D 64 beta 2915 2921 2918 2940 C1' U D 65 beta 2935 2941 2938 2960 C1' A D 66 beta 2955 2961 2958 2982 C1' G D 67 beta 2977 2983 2980 3005 C1' G D 68 beta 3000 3006 3003 3028 C1' G D 69 beta 3023 3029 3026 3051 C1' G D 70 beta 3046 3052 3049 3074 C1' A D 71 beta 3069 3075 3072 3096 C1' C D 72 beta 3091 3097 3094 3116 C1' G D 73 beta 3111 3117 3114 3139 C1' C D 74 beta 3134 3140 3137 8880 C1' AMP C 134 beta 8875 8881 8878 8902 C1' AMP D 134 beta 8897 8903 8900 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G C 1 OK 13 9 12 34 C2' U C 2 OK 36 32 35 54 C2' C C 3 OK 56 52 55 74 C2' C C 4 OK 76 72 75 94 C2' C C 5 OK 96 92 95 114 C2' C C 6 OK 116 112 115 134 C2' U C 7 OK 136 132 135 154 C2' U C 8 OK 156 152 155 174 C2' C C 9 OK 176 172 175 194 C2' G C 10 OK 196 192 195 217 C2' U C 11 OK 219 215 218 237 C2' C C 12 OK 239 235 238 257 C2' U C 13 OK 259 255 258 277 C2' A C 14 OK 279 275 278 299 C2' G C 15 OK 301 297 300 322 C2' A C 16 OK 324 320 323 344 C2' G C 17 OK 346 342 345 367 C2' G C 18 OK 369 365 368 390 C2' C C 19 OK 392 388 391 410 C2' C C 20 OK 412 408 411 430 C2' C C 20 OK 432 428 431 450 C2' A C 21 OK 452 448 451 472 C2' G C 22 OK 474 470 473 495 C2' G C 23 OK 497 493 496 518 C2' A C 24 OK 520 516 519 540 C2' C C 25 OK 542 538 541 560 C2' A C 26 OK 562 558 561 582 C2' C C 27 OK 584 580 583 602 C2' C C 28 OK 604 600 603 622 C2' G C 29 OK 624 620 623 645 C2' C C 30 OK 647 643 646 665 C2' C C 31 OK 667 663 666 685 C2' C C 32 OK 687 683 686 705 C2' U C 33 OK 707 703 706 725 C2' U C 34 OK 727 723 726 745 C2' U C 35 OK 747 743 746 765 C2' C C 36 OK 767 763 766 785 C2' A C 37 OK 787 783 786 807 C2' C C 38 OK 809 805 808 827 C2' G C 39 OK 829 825 828 850 C2' G C 40 OK 852 848 851 873 C2' C C 41 OK 875 871 874 893 C2' G C 42 OK 895 891 894 916 C2' G C 43 OK 918 914 917 939 C2' U C 44 OK 941 937 940 959 C2' A C 45 OK 961 957 960 981 C2' A C 46 OK 983 979 982 1003 C2' C C 47 OK 1005 1001 1004 1023 C2' A C 49 OK 1025 1021 1024 1045 C2' G C 50 OK 1047 1043 1046 1068 C2' G C 51 OK 1070 1066 1069 1091 C2' G C 52 OK 1093 1089 1092 1114 C2' G C 53 OK 1116 1112 1115 1137 C2' U C 54 OK 1139 1135 1138 1157 C2' U C 55 OK 1159 1155 1158 1177 C2' C C 56 OK 1179 1175 1178 1197 C2' G C 57 OK 1199 1195 1198 1220 C2' A C 58 OK 1222 1218 1221 1242 C2' A C 59 OK 1244 1240 1243 1264 C2' U C 60 OK 1266 1262 1265 1284 C2' C C 61 OK 1286 1282 1285 1304 C2' C C 62 OK 1306 1302 1305 1324 C2' C C 63 OK 1326 1322 1325 1344 C2' C C 64 OK 1346 1342 1345 1364 C2' U C 65 OK 1366 1362 1365 1384 C2' A C 66 OK 1386 1382 1385 1406 C2' G C 67 OK 1408 1404 1407 1429 C2' G C 68 OK 1431 1427 1430 1452 C2' G C 69 OK 1454 1450 1453 1475 C2' G C 70 OK 1477 1473 1476 1498 C2' A C 71 OK 1500 1496 1499 1520 C2' C C 72 OK 1522 1518 1521 1540 C2' G C 73 OK 1542 1538 1541 1563 C2' C C 74 OK 1565 1561 1564 1585 C2' G D 1 OK 1587 1583 1586 1608 C2' U D 2 OK 1610 1606 1609 1628 C2' C D 3 OK 1630 1626 1629 1648 C2' C D 4 OK 1650 1646 1649 1668 C2' C D 5 OK 1670 1666 1669 1688 C2' C D 6 OK 1690 1686 1689 1708 C2' U D 7 OK 1710 1706 1709 1728 C2' U D 8 OK 1730 1726 1729 1748 C2' C D 9 OK 1750 1746 1749 1768 C2' G D 10 OK 1770 1766 1769 1791 C2' U D 11 OK 1793 1789 1792 1811 C2' C D 12 OK 1813 1809 1812 1831 C2' U D 13 OK 1833 1829 1832 1851 C2' A D 14 OK 1853 1849 1852 1873 C2' G D 15 OK 1875 1871 1874 1896 C2' A D 16 OK 1898 1894 1897 1918 C2' G D 17 OK 1920 1916 1919 1941 C2' G D 18 OK 1943 1939 1942 1964 C2' C D 19 OK 1966 1962 1965 1984 C2' C D 20 OK 1986 1982 1985 2004 C2' C D 20 OK 2006 2002 2005 2024 C2' A D 21 OK 2026 2022 2025 2046 C2' G D 22 OK 2048 2044 2047 2069 C2' G D 23 OK 2071 2067 2070 2092 C2' A D 24 OK 2094 2090 2093 2114 C2' C D 25 OK 2116 2112 2115 2134 C2' A D 26 OK 2136 2132 2135 2156 C2' C D 27 OK 2158 2154 2157 2176 C2' C D 28 OK 2178 2174 2177 2196 C2' G D 29 OK 2198 2194 2197 2219 C2' C D 30 OK 2221 2217 2220 2239 C2' C D 31 OK 2241 2237 2240 2259 C2' C D 32 OK 2261 2257 2260 2279 C2' U D 33 OK 2281 2277 2280 2299 C2' U D 34 OK 2301 2297 2300 2319 C2' U D 35 OK 2321 2317 2320 2339 C2' C D 36 OK 2341 2337 2340 2359 C2' A D 37 OK 2361 2357 2360 2381 C2' C D 38 OK 2383 2379 2382 2401 C2' G D 39 OK 2403 2399 2402 2424 C2' G D 40 OK 2426 2422 2425 2447 C2' C D 41 OK 2449 2445 2448 2467 C2' G D 42 OK 2469 2465 2468 2490 C2' G D 43 OK 2492 2488 2491 2513 C2' U D 44 OK 2515 2511 2514 2533 C2' A D 45 OK 2535 2531 2534 2555 C2' A D 46 OK 2557 2553 2556 2577 C2' C D 47 OK 2579 2575 2578 2597 C2' A D 49 OK 2599 2595 2598 2619 C2' G D 50 OK 2621 2617 2620 2642 C2' G D 51 OK 2644 2640 2643 2665 C2' G D 52 OK 2667 2663 2666 2688 C2' G D 53 OK 2690 2686 2689 2711 C2' U D 54 OK 2713 2709 2712 2731 C2' U D 55 OK 2733 2729 2732 2751 C2' C D 56 OK 2753 2749 2752 2771 C2' G D 57 OK 2773 2769 2772 2794 C2' A D 58 OK 2796 2792 2795 2816 C2' A D 59 OK 2818 2814 2817 2838 C2' U D 60 OK 2840 2836 2839 2858 C2' C D 61 OK 2860 2856 2859 2878 C2' C D 62 OK 2880 2876 2879 2898 C2' C D 63 OK 2900 2896 2899 2918 C2' C D 64 OK 2920 2916 2919 2938 C2' U D 65 OK 2940 2936 2939 2958 C2' A D 66 OK 2960 2956 2959 2980 C2' G D 67 OK 2982 2978 2981 3003 C2' G D 68 OK 3005 3001 3004 3026 C2' G D 69 OK 3028 3024 3027 3049 C2' G D 70 OK 3051 3047 3050 3072 C2' A D 71 OK 3074 3070 3073 3094 C2' C D 72 OK 3096 3092 3095 3114 C2' G D 73 OK 3116 3112 3115 3137 C2' C D 74 OK 3139 3135 3138 8878 C2' AMP C 134 OK 8880 8876 8879 8900 C2' AMP D 134 OK 8902 8898 8901 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G C 1 OK 7 10 11 32 C3' U C 2 OK 30 33 34 52 C3' C C 3 OK 50 53 54 72 C3' C C 4 OK 70 73 74 92 C3' C C 5 OK 90 93 94 112 C3' C C 6 OK 110 113 114 132 C3' U C 7 OK 130 133 134 152 C3' U C 8 OK 150 153 154 172 C3' C C 9 OK 170 173 174 192 C3' G C 10 OK 190 193 194 215 C3' U C 11 OK 213 216 217 235 C3' C C 12 OK 233 236 237 255 C3' U C 13 OK 253 256 257 275 C3' A C 14 OK 273 276 277 297 C3' G C 15 OK 295 298 299 320 C3' A C 16 OK 318 321 322 342 C3' G C 17 OK 340 343 344 365 C3' G C 18 OK 363 366 367 388 C3' C C 19 OK 386 389 390 408 C3' C C 20 OK 406 409 410 428 C3' C C 20 OK 426 429 430 448 C3' A C 21 OK 446 449 450 470 C3' G C 22 OK 468 471 472 493 C3' G C 23 OK 491 494 495 516 C3' A C 24 OK 514 517 518 538 C3' C C 25 OK 536 539 540 558 C3' A C 26 OK 556 559 560 580 C3' C C 27 OK 578 581 582 600 C3' C C 28 OK 598 601 602 620 C3' G C 29 OK 618 621 622 643 C3' C C 30 OK 641 644 645 663 C3' C C 31 OK 661 664 665 683 C3' C C 32 OK 681 684 685 703 C3' U C 33 OK 701 704 705 723 C3' U C 34 OK 721 724 725 743 C3' U C 35 OK 741 744 745 763 C3' C C 36 OK 761 764 765 783 C3' A C 37 OK 781 784 785 805 C3' C C 38 OK 803 806 807 825 C3' G C 39 OK 823 826 827 848 C3' G C 40 OK 846 849 850 871 C3' C C 41 OK 869 872 873 891 C3' G C 42 OK 889 892 893 914 C3' G C 43 OK 912 915 916 937 C3' U C 44 OK 935 938 939 957 C3' A C 45 OK 955 958 959 979 C3' A C 46 OK 977 980 981 1001 C3' C C 47 OK 999 1002 1003 1021 C3' A C 49 OK 1019 1022 1023 1043 C3' G C 50 OK 1041 1044 1045 1066 C3' G C 51 OK 1064 1067 1068 1089 C3' G C 52 OK 1087 1090 1091 1112 C3' G C 53 OK 1110 1113 1114 1135 C3' U C 54 OK 1133 1136 1137 1155 C3' U C 55 OK 1153 1156 1157 1175 C3' C C 56 OK 1173 1176 1177 1195 C3' G C 57 OK 1193 1196 1197 1218 C3' A C 58 OK 1216 1219 1220 1240 C3' A C 59 OK 1238 1241 1242 1262 C3' U C 60 OK 1260 1263 1264 1282 C3' C C 61 OK 1280 1283 1284 1302 C3' C C 62 OK 1300 1303 1304 1322 C3' C C 63 OK 1320 1323 1324 1342 C3' C C 64 OK 1340 1343 1344 1362 C3' U C 65 OK 1360 1363 1364 1382 C3' A C 66 OK 1380 1383 1384 1404 C3' G C 67 OK 1402 1405 1406 1427 C3' G C 68 OK 1425 1428 1429 1450 C3' G C 69 OK 1448 1451 1452 1473 C3' G C 70 OK 1471 1474 1475 1496 C3' A C 71 OK 1494 1497 1498 1518 C3' C C 72 OK 1516 1519 1520 1538 C3' G C 73 OK 1536 1539 1540 1561 C3' C C 74 OK 1559 1562 1563 1583 C3' G D 1 OK 1581 1584 1585 1606 C3' U D 2 OK 1604 1607 1608 1626 C3' C D 3 OK 1624 1627 1628 1646 C3' C D 4 OK 1644 1647 1648 1666 C3' C D 5 OK 1664 1667 1668 1686 C3' C D 6 OK 1684 1687 1688 1706 C3' U D 7 OK 1704 1707 1708 1726 C3' U D 8 OK 1724 1727 1728 1746 C3' C D 9 OK 1744 1747 1748 1766 C3' G D 10 OK 1764 1767 1768 1789 C3' U D 11 OK 1787 1790 1791 1809 C3' C D 12 OK 1807 1810 1811 1829 C3' U D 13 OK 1827 1830 1831 1849 C3' A D 14 OK 1847 1850 1851 1871 C3' G D 15 OK 1869 1872 1873 1894 C3' A D 16 OK 1892 1895 1896 1916 C3' G D 17 OK 1914 1917 1918 1939 C3' G D 18 OK 1937 1940 1941 1962 C3' C D 19 OK 1960 1963 1964 1982 C3' C D 20 OK 1980 1983 1984 2002 C3' C D 20 OK 2000 2003 2004 2022 C3' A D 21 OK 2020 2023 2024 2044 C3' G D 22 OK 2042 2045 2046 2067 C3' G D 23 OK 2065 2068 2069 2090 C3' A D 24 OK 2088 2091 2092 2112 C3' C D 25 OK 2110 2113 2114 2132 C3' A D 26 OK 2130 2133 2134 2154 C3' C D 27 OK 2152 2155 2156 2174 C3' C D 28 OK 2172 2175 2176 2194 C3' G D 29 OK 2192 2195 2196 2217 C3' C D 30 OK 2215 2218 2219 2237 C3' C D 31 OK 2235 2238 2239 2257 C3' C D 32 OK 2255 2258 2259 2277 C3' U D 33 OK 2275 2278 2279 2297 C3' U D 34 OK 2295 2298 2299 2317 C3' U D 35 OK 2315 2318 2319 2337 C3' C D 36 OK 2335 2338 2339 2357 C3' A D 37 OK 2355 2358 2359 2379 C3' C D 38 OK 2377 2380 2381 2399 C3' G D 39 OK 2397 2400 2401 2422 C3' G D 40 OK 2420 2423 2424 2445 C3' C D 41 OK 2443 2446 2447 2465 C3' G D 42 OK 2463 2466 2467 2488 C3' G D 43 OK 2486 2489 2490 2511 C3' U D 44 OK 2509 2512 2513 2531 C3' A D 45 OK 2529 2532 2533 2553 C3' A D 46 OK 2551 2554 2555 2575 C3' C D 47 OK 2573 2576 2577 2595 C3' A D 49 OK 2593 2596 2597 2617 C3' G D 50 OK 2615 2618 2619 2640 C3' G D 51 OK 2638 2641 2642 2663 C3' G D 52 OK 2661 2664 2665 2686 C3' G D 53 OK 2684 2687 2688 2709 C3' U D 54 OK 2707 2710 2711 2729 C3' U D 55 OK 2727 2730 2731 2749 C3' C D 56 OK 2747 2750 2751 2769 C3' G D 57 OK 2767 2770 2771 2792 C3' A D 58 OK 2790 2793 2794 2814 C3' A D 59 OK 2812 2815 2816 2836 C3' U D 60 OK 2834 2837 2838 2856 C3' C D 61 OK 2854 2857 2858 2876 C3' C D 62 OK 2874 2877 2878 2896 C3' C D 63 OK 2894 2897 2898 2916 C3' C D 64 OK 2914 2917 2918 2936 C3' U D 65 OK 2934 2937 2938 2956 C3' A D 66 OK 2954 2957 2958 2978 C3' G D 67 OK 2976 2979 2980 3001 C3' G D 68 OK 2999 3002 3003 3024 C3' G D 69 OK 3022 3025 3026 3047 C3' G D 70 OK 3045 3048 3049 3070 C3' A D 71 OK 3068 3071 3072 3092 C3' C D 72 OK 3090 3093 3094 3112 C3' G D 73 OK 3110 3113 3114 3135 C3' C D 74 OK 3133 3136 3137 8876 C3' AMP C 134 OK 8874 8877 8878 8898 C3' AMP D 134 OK 8896 8899 8900 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G C 1 OK 9 6 8 30 C4' U C 2 OK 32 29 31 50 C4' C C 3 OK 52 49 51 70 C4' C C 4 OK 72 69 71 90 C4' C C 5 OK 92 89 91 110 C4' C C 6 OK 112 109 111 130 C4' U C 7 OK 132 129 131 150 C4' U C 8 OK 152 149 151 170 C4' C C 9 OK 172 169 171 190 C4' G C 10 OK 192 189 191 213 C4' U C 11 OK 215 212 214 233 C4' C C 12 OK 235 232 234 253 C4' U C 13 OK 255 252 254 273 C4' A C 14 OK 275 272 274 295 C4' G C 15 OK 297 294 296 318 C4' A C 16 OK 320 317 319 340 C4' G C 17 OK 342 339 341 363 C4' G C 18 OK 365 362 364 386 C4' C C 19 OK 388 385 387 406 C4' C C 20 OK 408 405 407 426 C4' C C 20 OK 428 425 427 446 C4' A C 21 OK 448 445 447 468 C4' G C 22 OK 470 467 469 491 C4' G C 23 OK 493 490 492 514 C4' A C 24 OK 516 513 515 536 C4' C C 25 OK 538 535 537 556 C4' A C 26 OK 558 555 557 578 C4' C C 27 OK 580 577 579 598 C4' C C 28 OK 600 597 599 618 C4' G C 29 OK 620 617 619 641 C4' C C 30 OK 643 640 642 661 C4' C C 31 OK 663 660 662 681 C4' C C 32 OK 683 680 682 701 C4' U C 33 OK 703 700 702 721 C4' U C 34 OK 723 720 722 741 C4' U C 35 OK 743 740 742 761 C4' C C 36 OK 763 760 762 781 C4' A C 37 OK 783 780 782 803 C4' C C 38 OK 805 802 804 823 C4' G C 39 OK 825 822 824 846 C4' G C 40 OK 848 845 847 869 C4' C C 41 OK 871 868 870 889 C4' G C 42 OK 891 888 890 912 C4' G C 43 OK 914 911 913 935 C4' U C 44 OK 937 934 936 955 C4' A C 45 OK 957 954 956 977 C4' A C 46 OK 979 976 978 999 C4' C C 47 OK 1001 998 1000 1019 C4' A C 49 OK 1021 1018 1020 1041 C4' G C 50 OK 1043 1040 1042 1064 C4' G C 51 OK 1066 1063 1065 1087 C4' G C 52 OK 1089 1086 1088 1110 C4' G C 53 OK 1112 1109 1111 1133 C4' U C 54 OK 1135 1132 1134 1153 C4' U C 55 OK 1155 1152 1154 1173 C4' C C 56 OK 1175 1172 1174 1193 C4' G C 57 OK 1195 1192 1194 1216 C4' A C 58 OK 1218 1215 1217 1238 C4' A C 59 OK 1240 1237 1239 1260 C4' U C 60 OK 1262 1259 1261 1280 C4' C C 61 OK 1282 1279 1281 1300 C4' C C 62 OK 1302 1299 1301 1320 C4' C C 63 OK 1322 1319 1321 1340 C4' C C 64 OK 1342 1339 1341 1360 C4' U C 65 OK 1362 1359 1361 1380 C4' A C 66 OK 1382 1379 1381 1402 C4' G C 67 OK 1404 1401 1403 1425 C4' G C 68 OK 1427 1424 1426 1448 C4' G C 69 OK 1450 1447 1449 1471 C4' G C 70 OK 1473 1470 1472 1494 C4' A C 71 OK 1496 1493 1495 1516 C4' C C 72 OK 1518 1515 1517 1536 C4' G C 73 OK 1538 1535 1537 1559 C4' C C 74 OK 1561 1558 1560 1581 C4' G D 1 OK 1583 1580 1582 1604 C4' U D 2 OK 1606 1603 1605 1624 C4' C D 3 OK 1626 1623 1625 1644 C4' C D 4 OK 1646 1643 1645 1664 C4' C D 5 OK 1666 1663 1665 1684 C4' C D 6 OK 1686 1683 1685 1704 C4' U D 7 OK 1706 1703 1705 1724 C4' U D 8 OK 1726 1723 1725 1744 C4' C D 9 OK 1746 1743 1745 1764 C4' G D 10 OK 1766 1763 1765 1787 C4' U D 11 OK 1789 1786 1788 1807 C4' C D 12 OK 1809 1806 1808 1827 C4' U D 13 OK 1829 1826 1828 1847 C4' A D 14 OK 1849 1846 1848 1869 C4' G D 15 OK 1871 1868 1870 1892 C4' A D 16 OK 1894 1891 1893 1914 C4' G D 17 OK 1916 1913 1915 1937 C4' G D 18 OK 1939 1936 1938 1960 C4' C D 19 OK 1962 1959 1961 1980 C4' C D 20 OK 1982 1979 1981 2000 C4' C D 20 OK 2002 1999 2001 2020 C4' A D 21 OK 2022 2019 2021 2042 C4' G D 22 OK 2044 2041 2043 2065 C4' G D 23 OK 2067 2064 2066 2088 C4' A D 24 OK 2090 2087 2089 2110 C4' C D 25 OK 2112 2109 2111 2130 C4' A D 26 OK 2132 2129 2131 2152 C4' C D 27 OK 2154 2151 2153 2172 C4' C D 28 OK 2174 2171 2173 2192 C4' G D 29 OK 2194 2191 2193 2215 C4' C D 30 OK 2217 2214 2216 2235 C4' C D 31 OK 2237 2234 2236 2255 C4' C D 32 OK 2257 2254 2256 2275 C4' U D 33 OK 2277 2274 2276 2295 C4' U D 34 OK 2297 2294 2296 2315 C4' U D 35 OK 2317 2314 2316 2335 C4' C D 36 OK 2337 2334 2336 2355 C4' A D 37 OK 2357 2354 2356 2377 C4' C D 38 OK 2379 2376 2378 2397 C4' G D 39 OK 2399 2396 2398 2420 C4' G D 40 OK 2422 2419 2421 2443 C4' C D 41 OK 2445 2442 2444 2463 C4' G D 42 OK 2465 2462 2464 2486 C4' G D 43 OK 2488 2485 2487 2509 C4' U D 44 OK 2511 2508 2510 2529 C4' A D 45 OK 2531 2528 2530 2551 C4' A D 46 OK 2553 2550 2552 2573 C4' C D 47 OK 2575 2572 2574 2593 C4' A D 49 OK 2595 2592 2594 2615 C4' G D 50 OK 2617 2614 2616 2638 C4' G D 51 OK 2640 2637 2639 2661 C4' G D 52 OK 2663 2660 2662 2684 C4' G D 53 OK 2686 2683 2685 2707 C4' U D 54 OK 2709 2706 2708 2727 C4' U D 55 OK 2729 2726 2728 2747 C4' C D 56 OK 2749 2746 2748 2767 C4' G D 57 OK 2769 2766 2768 2790 C4' A D 58 OK 2792 2789 2791 2812 C4' A D 59 OK 2814 2811 2813 2834 C4' U D 60 OK 2836 2833 2835 2854 C4' C D 61 OK 2856 2853 2855 2874 C4' C D 62 OK 2876 2873 2875 2894 C4' C D 63 OK 2896 2893 2895 2914 C4' C D 64 OK 2916 2913 2915 2934 C4' U D 65 OK 2936 2933 2935 2954 C4' A D 66 OK 2956 2953 2955 2976 C4' G D 67 OK 2978 2975 2977 2999 C4' G D 68 OK 3001 2998 3000 3022 C4' G D 69 OK 3024 3021 3023 3045 C4' G D 70 OK 3047 3044 3046 3068 C4' A D 71 OK 3070 3067 3069 3090 C4' C D 72 OK 3092 3089 3091 3110 C4' G D 73 OK 3112 3109 3111 3133 C4' C D 74 OK 3135 3132 3134 8874 C4' AMP C 134 OK 8876 8873 8875 8896 C4' AMP D 134 OK 8898 8895 8897 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G C 1 5 7 29 C5' U C 2 28 30 49 C5' C C 3 48 50 69 C5' C C 4 68 70 89 C5' C C 5 88 90 109 C5' C C 6 108 110 129 C5' U C 7 128 130 149 C5' U C 8 148 150 169 C5' C C 9 168 170 189 C5' G C 10 188 190 212 C5' U C 11 211 213 232 C5' C C 12 231 233 252 C5' U C 13 251 253 272 C5' A C 14 271 273 294 C5' G C 15 293 295 317 C5' A C 16 316 318 339 C5' G C 17 338 340 362 C5' G C 18 361 363 385 C5' C C 19 384 386 405 C5' C C 20 404 406 425 C5' C C 20 424 426 445 C5' A C 21 444 446 467 C5' G C 22 466 468 490 C5' G C 23 489 491 513 C5' A C 24 512 514 535 C5' C C 25 534 536 555 C5' A C 26 554 556 577 C5' C C 27 576 578 597 C5' C C 28 596 598 617 C5' G C 29 616 618 640 C5' C C 30 639 641 660 C5' C C 31 659 661 680 C5' C C 32 679 681 700 C5' U C 33 699 701 720 C5' U C 34 719 721 740 C5' U C 35 739 741 760 C5' C C 36 759 761 780 C5' A C 37 779 781 802 C5' C C 38 801 803 822 C5' G C 39 821 823 845 C5' G C 40 844 846 868 C5' C C 41 867 869 888 C5' G C 42 887 889 911 C5' G C 43 910 912 934 C5' U C 44 933 935 954 C5' A C 45 953 955 976 C5' A C 46 975 977 998 C5' C C 47 997 999 1018 C5' A C 49 1017 1019 1040 C5' G C 50 1039 1041 1063 C5' G C 51 1062 1064 1086 C5' G C 52 1085 1087 1109 C5' G C 53 1108 1110 1132 C5' U C 54 1131 1133 1152 C5' U C 55 1151 1153 1172 C5' C C 56 1171 1173 1192 C5' G C 57 1191 1193 1215 C5' A C 58 1214 1216 1237 C5' A C 59 1236 1238 1259 C5' U C 60 1258 1260 1279 C5' C C 61 1278 1280 1299 C5' C C 62 1298 1300 1319 C5' C C 63 1318 1320 1339 C5' C C 64 1338 1340 1359 C5' U C 65 1358 1360 1379 C5' A C 66 1378 1380 1401 C5' G C 67 1400 1402 1424 C5' G C 68 1423 1425 1447 C5' G C 69 1446 1448 1470 C5' G C 70 1469 1471 1493 C5' A C 71 1492 1494 1515 C5' C C 72 1514 1516 1535 C5' G C 73 1534 1536 1558 C5' C C 74 1557 1559 1580 C5' G D 1 1579 1581 1603 C5' U D 2 1602 1604 1623 C5' C D 3 1622 1624 1643 C5' C D 4 1642 1644 1663 C5' C D 5 1662 1664 1683 C5' C D 6 1682 1684 1703 C5' U D 7 1702 1704 1723 C5' U D 8 1722 1724 1743 C5' C D 9 1742 1744 1763 C5' G D 10 1762 1764 1786 C5' U D 11 1785 1787 1806 C5' C D 12 1805 1807 1826 C5' U D 13 1825 1827 1846 C5' A D 14 1845 1847 1868 C5' G D 15 1867 1869 1891 C5' A D 16 1890 1892 1913 C5' G D 17 1912 1914 1936 C5' G D 18 1935 1937 1959 C5' C D 19 1958 1960 1979 C5' C D 20 1978 1980 1999 C5' C D 20 1998 2000 2019 C5' A D 21 2018 2020 2041 C5' G D 22 2040 2042 2064 C5' G D 23 2063 2065 2087 C5' A D 24 2086 2088 2109 C5' C D 25 2108 2110 2129 C5' A D 26 2128 2130 2151 C5' C D 27 2150 2152 2171 C5' C D 28 2170 2172 2191 C5' G D 29 2190 2192 2214 C5' C D 30 2213 2215 2234 C5' C D 31 2233 2235 2254 C5' C D 32 2253 2255 2274 C5' U D 33 2273 2275 2294 C5' U D 34 2293 2295 2314 C5' U D 35 2313 2315 2334 C5' C D 36 2333 2335 2354 C5' A D 37 2353 2355 2376 C5' C D 38 2375 2377 2396 C5' G D 39 2395 2397 2419 C5' G D 40 2418 2420 2442 C5' C D 41 2441 2443 2462 C5' G D 42 2461 2463 2485 C5' G D 43 2484 2486 2508 C5' U D 44 2507 2509 2528 C5' A D 45 2527 2529 2550 C5' A D 46 2549 2551 2572 C5' C D 47 2571 2573 2592 C5' A D 49 2591 2593 2614 C5' G D 50 2613 2615 2637 C5' G D 51 2636 2638 2660 C5' G D 52 2659 2661 2683 C5' G D 53 2682 2684 2706 C5' U D 54 2705 2707 2726 C5' U D 55 2725 2727 2746 C5' C D 56 2745 2747 2766 C5' G D 57 2765 2767 2789 C5' A D 58 2788 2790 2811 C5' A D 59 2810 2812 2833 C5' U D 60 2832 2834 2853 C5' C D 61 2852 2854 2873 C5' C D 62 2872 2874 2893 C5' C D 63 2892 2894 2913 C5' C D 64 2912 2914 2933 C5' U D 65 2932 2934 2953 C5' A D 66 2952 2954 2975 C5' G D 67 2974 2976 2998 C5' G D 68 2997 2999 3021 C5' G D 69 3020 3022 3044 C5' G D 70 3043 3045 3067 C5' A D 71 3066 3068 3089 C5' C D 72 3088 3090 3109 C5' G D 73 3108 3110 3132 C5' C D 74 3131 3133 8873 C5' AMP C 134 8872 8874 8895 C5' AMP D 134 8894 8896 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G C 1 OK OK 3 4 5 25 P U C 2 distorted distorted 10 26 27 28 45 P C C 3 distorted distorted 33 46 47 48 65 P C C 4 distorted distorted 53 66 67 68 85 P C C 5 distorted distorted 73 86 87 88 105 P C C 6 distorted distorted 93 106 107 108 125 P U C 7 distorted distorted 113 126 127 128 145 P U C 8 distorted distorted 133 146 147 148 165 P C C 9 distorted distorted 153 166 167 168 185 P G C 10 distorted distorted 173 186 187 188 208 P U C 11 distorted distorted 193 209 210 211 228 P C C 12 distorted distorted 216 229 230 231 248 P U C 13 distorted distorted 236 249 250 251 268 P A C 14 distorted distorted 256 269 270 271 290 P G C 15 distorted distorted 276 291 292 293 313 P A C 16 distorted distorted 298 314 315 316 335 P G C 17 distorted distorted 321 336 337 338 358 P G C 18 distorted distorted 343 359 360 361 381 P C C 19 distorted distorted 366 382 383 384 401 P C C 20 distorted distorted 389 402 403 404 421 P C C 20 distorted distorted 409 422 423 424 441 P A C 21 distorted distorted 429 442 443 444 463 P G C 22 distorted distorted 449 464 465 466 486 P G C 23 distorted distorted 471 487 488 489 509 P A C 24 distorted distorted 494 510 511 512 531 P C C 25 distorted distorted 517 532 533 534 551 P A C 26 distorted distorted 539 552 553 554 573 P C C 27 distorted distorted 559 574 575 576 593 P C C 28 distorted distorted 581 594 595 596 613 P G C 29 distorted distorted 601 614 615 616 636 P C C 30 distorted distorted 621 637 638 639 656 P C C 31 distorted distorted 644 657 658 659 676 P C C 32 distorted distorted 664 677 678 679 696 P U C 33 distorted distorted 684 697 698 699 716 P U C 34 distorted distorted 704 717 718 719 736 P U C 35 distorted distorted 724 737 738 739 756 P C C 36 distorted distorted 744 757 758 759 776 P A C 37 distorted distorted 764 777 778 779 798 P C C 38 distorted distorted 784 799 800 801 818 P G C 39 distorted distorted 806 819 820 821 841 P G C 40 distorted distorted 826 842 843 844 864 P C C 41 distorted distorted 849 865 866 867 884 P G C 42 distorted distorted 872 885 886 887 907 P G C 43 distorted distorted 892 908 909 910 930 P U C 44 distorted distorted 915 931 932 933 950 P A C 45 distorted distorted 938 951 952 953 972 P A C 46 distorted distorted 958 973 974 975 994 P C C 47 distorted distorted 980 995 996 997 1014 P A C 49 distorted distorted 1002 1015 1016 1017 1036 P G C 50 distorted distorted 1022 1037 1038 1039 1059 P G C 51 distorted distorted 1044 1060 1061 1062 1082 P G C 52 distorted distorted 1067 1083 1084 1085 1105 P G C 53 distorted distorted 1090 1106 1107 1108 1128 P U C 54 distorted distorted 1113 1129 1130 1131 1148 P U C 55 distorted distorted 1136 1149 1150 1151 1168 P C C 56 distorted distorted 1156 1169 1170 1171 1188 P G C 57 distorted distorted 1176 1189 1190 1191 1211 P A C 58 distorted distorted 1196 1212 1213 1214 1233 P A C 59 distorted distorted 1219 1234 1235 1236 1255 P U C 60 distorted distorted 1241 1256 1257 1258 1275 P C C 61 distorted distorted 1263 1276 1277 1278 1295 P C C 62 distorted distorted 1283 1296 1297 1298 1315 P C C 63 distorted distorted 1303 1316 1317 1318 1335 P C C 64 distorted distorted 1323 1336 1337 1338 1355 P U C 65 distorted distorted 1343 1356 1357 1358 1375 P A C 66 distorted distorted 1363 1376 1377 1378 1397 P G C 67 distorted distorted 1383 1398 1399 1400 1420 P G C 68 distorted distorted 1405 1421 1422 1423 1443 P G C 69 distorted distorted 1428 1444 1445 1446 1466 P G C 70 distorted distorted 1451 1467 1468 1469 1489 P A C 71 distorted distorted 1474 1490 1491 1492 1511 P C C 72 distorted distorted 1497 1512 1513 1514 1531 P G C 73 distorted distorted 1519 1532 1533 1534 1554 P C C 74 distorted distorted 1539 1555 1556 1557 1576 P G D 1 OK OK 1577 1578 1579 1599 P U D 2 distorted distorted 1584 1600 1601 1602 1619 P C D 3 distorted distorted 1607 1620 1621 1622 1639 P C D 4 distorted distorted 1627 1640 1641 1642 1659 P C D 5 distorted distorted 1647 1660 1661 1662 1679 P C D 6 distorted distorted 1667 1680 1681 1682 1699 P U D 7 distorted distorted 1687 1700 1701 1702 1719 P U D 8 distorted distorted 1707 1720 1721 1722 1739 P C D 9 distorted distorted 1727 1740 1741 1742 1759 P G D 10 distorted distorted 1747 1760 1761 1762 1782 P U D 11 distorted distorted 1767 1783 1784 1785 1802 P C D 12 distorted distorted 1790 1803 1804 1805 1822 P U D 13 distorted distorted 1810 1823 1824 1825 1842 P A D 14 distorted distorted 1830 1843 1844 1845 1864 P G D 15 distorted distorted 1850 1865 1866 1867 1887 P A D 16 distorted distorted 1872 1888 1889 1890 1909 P G D 17 distorted distorted 1895 1910 1911 1912 1932 P G D 18 distorted distorted 1917 1933 1934 1935 1955 P C D 19 distorted distorted 1940 1956 1957 1958 1975 P C D 20 distorted distorted 1963 1976 1977 1978 1995 P C D 20 distorted distorted 1983 1996 1997 1998 2015 P A D 21 distorted distorted 2003 2016 2017 2018 2037 P G D 22 distorted distorted 2023 2038 2039 2040 2060 P G D 23 distorted distorted 2045 2061 2062 2063 2083 P A D 24 distorted distorted 2068 2084 2085 2086 2105 P C D 25 distorted distorted 2091 2106 2107 2108 2125 P A D 26 distorted distorted 2113 2126 2127 2128 2147 P C D 27 distorted distorted 2133 2148 2149 2150 2167 P C D 28 distorted distorted 2155 2168 2169 2170 2187 P G D 29 distorted distorted 2175 2188 2189 2190 2210 P C D 30 distorted distorted 2195 2211 2212 2213 2230 P C D 31 distorted distorted 2218 2231 2232 2233 2250 P C D 32 distorted distorted 2238 2251 2252 2253 2270 P U D 33 distorted distorted 2258 2271 2272 2273 2290 P U D 34 distorted distorted 2278 2291 2292 2293 2310 P U D 35 distorted distorted 2298 2311 2312 2313 2330 P C D 36 distorted distorted 2318 2331 2332 2333 2350 P A D 37 distorted distorted 2338 2351 2352 2353 2372 P C D 38 distorted distorted 2358 2373 2374 2375 2392 P G D 39 distorted distorted 2380 2393 2394 2395 2415 P G D 40 distorted distorted 2400 2416 2417 2418 2438 P C D 41 distorted distorted 2423 2439 2440 2441 2458 P G D 42 distorted distorted 2446 2459 2460 2461 2481 P G D 43 distorted distorted 2466 2482 2483 2484 2504 P U D 44 distorted distorted 2489 2505 2506 2507 2524 P A D 45 distorted distorted 2512 2525 2526 2527 2546 P A D 46 distorted distorted 2532 2547 2548 2549 2568 P C D 47 distorted distorted 2554 2569 2570 2571 2588 P A D 49 distorted distorted 2576 2589 2590 2591 2610 P G D 50 distorted distorted 2596 2611 2612 2613 2633 P G D 51 distorted distorted 2618 2634 2635 2636 2656 P G D 52 distorted distorted 2641 2657 2658 2659 2679 P G D 53 distorted distorted 2664 2680 2681 2682 2702 P U D 54 distorted distorted 2687 2703 2704 2705 2722 P U D 55 distorted distorted 2710 2723 2724 2725 2742 P C D 56 distorted distorted 2730 2743 2744 2745 2762 P G D 57 distorted distorted 2750 2763 2764 2765 2785 P A D 58 distorted distorted 2770 2786 2787 2788 2807 P A D 59 distorted distorted 2793 2808 2809 2810 2829 P U D 60 distorted distorted 2815 2830 2831 2832 2849 P C D 61 distorted distorted 2837 2850 2851 2852 2869 P C D 62 distorted distorted 2857 2870 2871 2872 2889 P C D 63 distorted distorted 2877 2890 2891 2892 2909 P C D 64 distorted distorted 2897 2910 2911 2912 2929 P U D 65 distorted distorted 2917 2930 2931 2932 2949 P A D 66 distorted distorted 2937 2950 2951 2952 2971 P G D 67 distorted distorted 2957 2972 2973 2974 2994 P G D 68 distorted distorted 2979 2995 2996 2997 3017 P G D 69 distorted distorted 3002 3018 3019 3020 3040 P G D 70 distorted distorted 3025 3041 3042 3043 3063 P A D 71 distorted distorted 3048 3064 3065 3066 3085 P C D 72 distorted distorted 3071 3086 3087 3088 3105 P G D 73 distorted distorted 3093 3106 3107 3108 3128 P C D 74 distorted distorted 3113 3129 3130 3131 8869 P AMP C 134 8870 8872 8891 P AMP D 134 8892 8894 ---------------------------------------------------------------------------------