ID code: '2AZX' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G C 501 beta 8 14 11 36 C1' A C 502 beta 31 37 34 58 C1' C C 503 beta 53 59 56 78 C1' C C 504 beta 73 79 76 98 C1' U C 505 beta 93 99 96 118 C1' C C 506 beta 113 119 116 138 C1' G C 507 beta 133 139 136 161 C1' U C 508 beta 156 162 159 181 C1' G C 509 beta 176 182 179 204 C1' G C 510 beta 199 205 202 227 C1' C C 511 beta 222 228 225 247 C1' G C 512 beta 242 248 245 270 C1' C C 513 beta 265 271 268 290 C1' A C 514 beta 285 291 288 312 C1' A C 515 beta 307 313 310 334 C1' U C 516 beta 329 335 332 354 C1' G C 518 beta 349 355 352 377 C1' G C 519 beta 372 378 375 400 C1' U C 520 beta 395 401 398 420 C1' A C 521 beta 415 421 418 442 C1' G C 522 beta 437 443 440 465 C1' C C 523 beta 460 466 463 485 C1' G C 524 beta 480 486 483 508 C1' C C 525 beta 503 509 506 528 C1' G C 526 beta 523 529 526 551 C1' U C 527 beta 546 552 549 571 C1' C C 528 beta 566 572 569 591 C1' U C 529 beta 586 592 589 611 C1' G C 530 beta 606 612 609 634 C1' A C 531 beta 629 635 632 656 C1' C C 532 beta 651 657 654 676 C1' U C 533 beta 671 677 674 696 C1' C C 534 beta 691 697 694 716 C1' C C 535 beta 711 717 714 736 C1' A C 536 beta 731 737 734 758 C1' G C 537 beta 753 759 756 781 C1' A C 538 beta 776 782 779 803 C1' U C 539 beta 798 804 801 823 C1' C C 540 beta 818 824 821 843 C1' A C 541 beta 838 844 841 865 C1' G C 542 beta 860 866 863 888 C1' A C 543 beta 883 889 886 910 C1' A C 544 beta 905 911 908 932 C1' G C 545 beta 927 933 930 955 C1' G C 546 beta 950 956 953 978 C1' U C 547 beta 973 979 976 998 C1' U C 548 beta 993 999 996 1018 C1' G C 549 beta 1013 1019 1016 1041 C1' C C 550 beta 1036 1042 1039 1061 C1' G C 551 beta 1056 1062 1059 1084 C1' U C 552 beta 1079 1085 1082 1104 C1' G C 553 beta 1099 1105 1102 1127 C1' U C 554 beta 1122 1128 1125 1147 C1' U C 555 beta 1142 1148 1145 1167 C1' C C 556 beta 1162 1168 1165 1187 C1' G C 557 beta 1182 1188 1185 1210 C1' A C 558 beta 1205 1211 1208 1232 C1' A C 559 beta 1227 1233 1230 1254 C1' U C 560 beta 1249 1255 1252 1274 C1' C C 561 beta 1269 1275 1272 1294 C1' A C 562 beta 1289 1295 1292 1316 C1' C C 563 beta 1311 1317 1314 1336 C1' G C 564 beta 1331 1337 1334 1359 C1' U C 565 beta 1354 1360 1357 1379 C1' C C 566 beta 1374 1380 1377 1399 C1' G C 567 beta 1394 1400 1397 1422 C1' G C 568 beta 1417 1423 1420 1445 C1' G C 569 beta 1440 1446 1443 1468 C1' G C 570 beta 1463 1469 1466 1491 C1' U C 571 beta 1486 1492 1489 1511 C1' C C 572 beta 1506 1512 1509 1531 C1' A C 573 beta 1526 1532 1529 1555 C1' G D 501 beta 1550 1556 1553 1578 C1' A D 502 beta 1573 1579 1576 1600 C1' C D 503 beta 1595 1601 1598 1620 C1' C D 504 beta 1615 1621 1618 1640 C1' U D 505 beta 1635 1641 1638 1660 C1' C D 506 beta 1655 1661 1658 1680 C1' G D 507 beta 1675 1681 1678 1703 C1' U D 508 beta 1698 1704 1701 1723 C1' G D 509 beta 1718 1724 1721 1746 C1' G D 510 beta 1741 1747 1744 1769 C1' C D 511 beta 1764 1770 1767 1789 C1' G D 512 beta 1784 1790 1787 1812 C1' C D 513 beta 1807 1813 1810 1832 C1' A D 514 beta 1827 1833 1830 1854 C1' A D 515 beta 1849 1855 1852 1876 C1' U D 516 beta 1871 1877 1874 1896 C1' G D 518 beta 1891 1897 1894 1919 C1' G D 519 beta 1914 1920 1917 1942 C1' U D 520 beta 1937 1943 1940 1962 C1' A D 521 beta 1957 1963 1960 1984 C1' G D 522 beta 1979 1985 1982 2007 C1' C D 523 beta 2002 2008 2005 2027 C1' G D 524 beta 2022 2028 2025 2050 C1' C D 525 beta 2045 2051 2048 2070 C1' G D 526 beta 2065 2071 2068 2093 C1' U D 527 beta 2088 2094 2091 2113 C1' C D 528 beta 2108 2114 2111 2133 C1' U D 529 beta 2128 2134 2131 2153 C1' G D 530 beta 2148 2154 2151 2176 C1' A D 531 beta 2171 2177 2174 2198 C1' C D 532 beta 2193 2199 2196 2218 C1' U D 533 beta 2213 2219 2216 2238 C1' C D 534 beta 2233 2239 2236 2258 C1' C D 535 beta 2253 2259 2256 2278 C1' A D 536 beta 2273 2279 2276 2300 C1' G D 537 beta 2295 2301 2298 2323 C1' A D 538 beta 2318 2324 2321 2345 C1' U D 539 beta 2340 2346 2343 2365 C1' C D 540 beta 2360 2366 2363 2385 C1' A D 541 beta 2380 2386 2383 2407 C1' G D 542 beta 2402 2408 2405 2430 C1' A D 543 beta 2425 2431 2428 2452 C1' A D 544 beta 2447 2453 2450 2474 C1' G D 545 beta 2469 2475 2472 2497 C1' G D 546 beta 2492 2498 2495 2520 C1' U D 547 beta 2515 2521 2518 2540 C1' U D 548 beta 2535 2541 2538 2560 C1' G D 549 beta 2555 2561 2558 2583 C1' C D 550 beta 2578 2584 2581 2603 C1' G D 551 beta 2598 2604 2601 2626 C1' U D 552 beta 2621 2627 2624 2646 C1' G D 553 beta 2641 2647 2644 2669 C1' U D 554 beta 2664 2670 2667 2689 C1' U D 555 beta 2684 2690 2687 2709 C1' C D 556 beta 2704 2710 2707 2729 C1' G D 557 beta 2724 2730 2727 2752 C1' A D 558 beta 2747 2753 2750 2774 C1' A D 559 beta 2769 2775 2772 2796 C1' U D 560 beta 2791 2797 2794 2816 C1' C D 561 beta 2811 2817 2814 2836 C1' A D 562 beta 2831 2837 2834 2858 C1' C D 563 beta 2853 2859 2856 2878 C1' G D 564 beta 2873 2879 2876 2901 C1' U D 565 beta 2896 2902 2899 2921 C1' C D 566 beta 2916 2922 2919 2941 C1' G D 567 beta 2936 2942 2939 2964 C1' G D 568 beta 2959 2965 2962 2987 C1' G D 569 beta 2982 2988 2985 3010 C1' G D 570 beta 3005 3011 3008 3033 C1' U D 571 beta 3028 3034 3031 3053 C1' C D 572 beta 3048 3054 3051 3073 C1' A D 573 beta 3068 3074 3071 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G C 501 OK 13 9 12 34 C2' A C 502 OK 36 32 35 56 C2' C C 503 OK 58 54 57 76 C2' C C 504 OK 78 74 77 96 C2' U C 505 OK 98 94 97 116 C2' C C 506 OK 118 114 117 136 C2' G C 507 OK 138 134 137 159 C2' U C 508 OK 161 157 160 179 C2' G C 509 OK 181 177 180 202 C2' G C 510 OK 204 200 203 225 C2' C C 511 OK 227 223 226 245 C2' G C 512 OK 247 243 246 268 C2' C C 513 OK 270 266 269 288 C2' A C 514 OK 290 286 289 310 C2' A C 515 OK 312 308 311 332 C2' U C 516 OK 334 330 333 352 C2' G C 518 OK 354 350 353 375 C2' G C 519 OK 377 373 376 398 C2' U C 520 OK 400 396 399 418 C2' A C 521 OK 420 416 419 440 C2' G C 522 OK 442 438 441 463 C2' C C 523 OK 465 461 464 483 C2' G C 524 OK 485 481 484 506 C2' C C 525 OK 508 504 507 526 C2' G C 526 OK 528 524 527 549 C2' U C 527 OK 551 547 550 569 C2' C C 528 OK 571 567 570 589 C2' U C 529 OK 591 587 590 609 C2' G C 530 OK 611 607 610 632 C2' A C 531 OK 634 630 633 654 C2' C C 532 OK 656 652 655 674 C2' U C 533 OK 676 672 675 694 C2' C C 534 OK 696 692 695 714 C2' C C 535 OK 716 712 715 734 C2' A C 536 OK 736 732 735 756 C2' G C 537 OK 758 754 757 779 C2' A C 538 OK 781 777 780 801 C2' U C 539 OK 803 799 802 821 C2' C C 540 OK 823 819 822 841 C2' A C 541 OK 843 839 842 863 C2' G C 542 OK 865 861 864 886 C2' A C 543 OK 888 884 887 908 C2' A C 544 OK 910 906 909 930 C2' G C 545 OK 932 928 931 953 C2' G C 546 OK 955 951 954 976 C2' U C 547 OK 978 974 977 996 C2' U C 548 OK 998 994 997 1016 C2' G C 549 OK 1018 1014 1017 1039 C2' C C 550 OK 1041 1037 1040 1059 C2' G C 551 OK 1061 1057 1060 1082 C2' U C 552 OK 1084 1080 1083 1102 C2' G C 553 OK 1104 1100 1103 1125 C2' U C 554 OK 1127 1123 1126 1145 C2' U C 555 OK 1147 1143 1146 1165 C2' C C 556 OK 1167 1163 1166 1185 C2' G C 557 OK 1187 1183 1186 1208 C2' A C 558 OK 1210 1206 1209 1230 C2' A C 559 OK 1232 1228 1231 1252 C2' U C 560 OK 1254 1250 1253 1272 C2' C C 561 OK 1274 1270 1273 1292 C2' A C 562 OK 1294 1290 1293 1314 C2' C C 563 OK 1316 1312 1315 1334 C2' G C 564 OK 1336 1332 1335 1357 C2' U C 565 OK 1359 1355 1358 1377 C2' C C 566 OK 1379 1375 1378 1397 C2' G C 567 OK 1399 1395 1398 1420 C2' G C 568 OK 1422 1418 1421 1443 C2' G C 569 OK 1445 1441 1444 1466 C2' G C 570 OK 1468 1464 1467 1489 C2' U C 571 OK 1491 1487 1490 1509 C2' C C 572 OK 1511 1507 1510 1529 C2' A C 573 OK 1531 1527 1530 1553 C2' G D 501 OK 1555 1551 1554 1576 C2' A D 502 OK 1578 1574 1577 1598 C2' C D 503 OK 1600 1596 1599 1618 C2' C D 504 OK 1620 1616 1619 1638 C2' U D 505 OK 1640 1636 1639 1658 C2' C D 506 OK 1660 1656 1659 1678 C2' G D 507 OK 1680 1676 1679 1701 C2' U D 508 OK 1703 1699 1702 1721 C2' G D 509 OK 1723 1719 1722 1744 C2' G D 510 OK 1746 1742 1745 1767 C2' C D 511 OK 1769 1765 1768 1787 C2' G D 512 OK 1789 1785 1788 1810 C2' C D 513 OK 1812 1808 1811 1830 C2' A D 514 OK 1832 1828 1831 1852 C2' A D 515 OK 1854 1850 1853 1874 C2' U D 516 OK 1876 1872 1875 1894 C2' G D 518 OK 1896 1892 1895 1917 C2' G D 519 OK 1919 1915 1918 1940 C2' U D 520 OK 1942 1938 1941 1960 C2' A D 521 OK 1962 1958 1961 1982 C2' G D 522 OK 1984 1980 1983 2005 C2' C D 523 OK 2007 2003 2006 2025 C2' G D 524 OK 2027 2023 2026 2048 C2' C D 525 OK 2050 2046 2049 2068 C2' G D 526 OK 2070 2066 2069 2091 C2' U D 527 OK 2093 2089 2092 2111 C2' C D 528 OK 2113 2109 2112 2131 C2' U D 529 OK 2133 2129 2132 2151 C2' G D 530 OK 2153 2149 2152 2174 C2' A D 531 OK 2176 2172 2175 2196 C2' C D 532 OK 2198 2194 2197 2216 C2' U D 533 OK 2218 2214 2217 2236 C2' C D 534 OK 2238 2234 2237 2256 C2' C D 535 OK 2258 2254 2257 2276 C2' A D 536 OK 2278 2274 2277 2298 C2' G D 537 OK 2300 2296 2299 2321 C2' A D 538 OK 2323 2319 2322 2343 C2' U D 539 OK 2345 2341 2344 2363 C2' C D 540 OK 2365 2361 2364 2383 C2' A D 541 OK 2385 2381 2384 2405 C2' G D 542 OK 2407 2403 2406 2428 C2' A D 543 OK 2430 2426 2429 2450 C2' A D 544 OK 2452 2448 2451 2472 C2' G D 545 OK 2474 2470 2473 2495 C2' G D 546 OK 2497 2493 2496 2518 C2' U D 547 OK 2520 2516 2519 2538 C2' U D 548 OK 2540 2536 2539 2558 C2' G D 549 OK 2560 2556 2559 2581 C2' C D 550 OK 2583 2579 2582 2601 C2' G D 551 OK 2603 2599 2602 2624 C2' U D 552 OK 2626 2622 2625 2644 C2' G D 553 OK 2646 2642 2645 2667 C2' U D 554 OK 2669 2665 2668 2687 C2' U D 555 OK 2689 2685 2688 2707 C2' C D 556 OK 2709 2705 2708 2727 C2' G D 557 OK 2729 2725 2728 2750 C2' A D 558 OK 2752 2748 2751 2772 C2' A D 559 OK 2774 2770 2773 2794 C2' U D 560 OK 2796 2792 2795 2814 C2' C D 561 OK 2816 2812 2815 2834 C2' A D 562 OK 2836 2832 2835 2856 C2' C D 563 OK 2858 2854 2857 2876 C2' G D 564 OK 2878 2874 2877 2899 C2' U D 565 OK 2901 2897 2900 2919 C2' C D 566 OK 2921 2917 2920 2939 C2' G D 567 OK 2941 2937 2940 2962 C2' G D 568 OK 2964 2960 2963 2985 C2' G D 569 OK 2987 2983 2986 3008 C2' G D 570 OK 3010 3006 3009 3031 C2' U D 571 OK 3033 3029 3032 3051 C2' C D 572 OK 3053 3049 3052 3071 C2' A D 573 OK 3073 3069 3072 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G C 501 OK 7 10 11 32 C3' A C 502 OK 30 33 34 54 C3' C C 503 OK 52 55 56 74 C3' C C 504 OK 72 75 76 94 C3' U C 505 OK 92 95 96 114 C3' C C 506 OK 112 115 116 134 C3' G C 507 OK 132 135 136 157 C3' U C 508 OK 155 158 159 177 C3' G C 509 OK 175 178 179 200 C3' G C 510 OK 198 201 202 223 C3' C C 511 OK 221 224 225 243 C3' G C 512 OK 241 244 245 266 C3' C C 513 OK 264 267 268 286 C3' A C 514 OK 284 287 288 308 C3' A C 515 OK 306 309 310 330 C3' U C 516 OK 328 331 332 350 C3' G C 518 OK 348 351 352 373 C3' G C 519 OK 371 374 375 396 C3' U C 520 OK 394 397 398 416 C3' A C 521 OK 414 417 418 438 C3' G C 522 OK 436 439 440 461 C3' C C 523 OK 459 462 463 481 C3' G C 524 OK 479 482 483 504 C3' C C 525 OK 502 505 506 524 C3' G C 526 OK 522 525 526 547 C3' U C 527 OK 545 548 549 567 C3' C C 528 OK 565 568 569 587 C3' U C 529 OK 585 588 589 607 C3' G C 530 OK 605 608 609 630 C3' A C 531 OK 628 631 632 652 C3' C C 532 OK 650 653 654 672 C3' U C 533 OK 670 673 674 692 C3' C C 534 OK 690 693 694 712 C3' C C 535 OK 710 713 714 732 C3' A C 536 OK 730 733 734 754 C3' G C 537 OK 752 755 756 777 C3' A C 538 OK 775 778 779 799 C3' U C 539 OK 797 800 801 819 C3' C C 540 OK 817 820 821 839 C3' A C 541 OK 837 840 841 861 C3' G C 542 OK 859 862 863 884 C3' A C 543 OK 882 885 886 906 C3' A C 544 OK 904 907 908 928 C3' G C 545 OK 926 929 930 951 C3' G C 546 OK 949 952 953 974 C3' U C 547 OK 972 975 976 994 C3' U C 548 OK 992 995 996 1014 C3' G C 549 OK 1012 1015 1016 1037 C3' C C 550 OK 1035 1038 1039 1057 C3' G C 551 OK 1055 1058 1059 1080 C3' U C 552 OK 1078 1081 1082 1100 C3' G C 553 OK 1098 1101 1102 1123 C3' U C 554 OK 1121 1124 1125 1143 C3' U C 555 OK 1141 1144 1145 1163 C3' C C 556 OK 1161 1164 1165 1183 C3' G C 557 OK 1181 1184 1185 1206 C3' A C 558 OK 1204 1207 1208 1228 C3' A C 559 OK 1226 1229 1230 1250 C3' U C 560 OK 1248 1251 1252 1270 C3' C C 561 OK 1268 1271 1272 1290 C3' A C 562 OK 1288 1291 1292 1312 C3' C C 563 OK 1310 1313 1314 1332 C3' G C 564 OK 1330 1333 1334 1355 C3' U C 565 OK 1353 1356 1357 1375 C3' C C 566 OK 1373 1376 1377 1395 C3' G C 567 OK 1393 1396 1397 1418 C3' G C 568 OK 1416 1419 1420 1441 C3' G C 569 OK 1439 1442 1443 1464 C3' G C 570 OK 1462 1465 1466 1487 C3' U C 571 OK 1485 1488 1489 1507 C3' C C 572 OK 1505 1508 1509 1527 C3' A C 573 OK 1525 1528 1529 1551 C3' G D 501 OK 1549 1552 1553 1574 C3' A D 502 OK 1572 1575 1576 1596 C3' C D 503 OK 1594 1597 1598 1616 C3' C D 504 OK 1614 1617 1618 1636 C3' U D 505 OK 1634 1637 1638 1656 C3' C D 506 OK 1654 1657 1658 1676 C3' G D 507 OK 1674 1677 1678 1699 C3' U D 508 OK 1697 1700 1701 1719 C3' G D 509 OK 1717 1720 1721 1742 C3' G D 510 OK 1740 1743 1744 1765 C3' C D 511 OK 1763 1766 1767 1785 C3' G D 512 OK 1783 1786 1787 1808 C3' C D 513 OK 1806 1809 1810 1828 C3' A D 514 OK 1826 1829 1830 1850 C3' A D 515 OK 1848 1851 1852 1872 C3' U D 516 OK 1870 1873 1874 1892 C3' G D 518 OK 1890 1893 1894 1915 C3' G D 519 OK 1913 1916 1917 1938 C3' U D 520 OK 1936 1939 1940 1958 C3' A D 521 OK 1956 1959 1960 1980 C3' G D 522 OK 1978 1981 1982 2003 C3' C D 523 OK 2001 2004 2005 2023 C3' G D 524 OK 2021 2024 2025 2046 C3' C D 525 OK 2044 2047 2048 2066 C3' G D 526 OK 2064 2067 2068 2089 C3' U D 527 OK 2087 2090 2091 2109 C3' C D 528 OK 2107 2110 2111 2129 C3' U D 529 OK 2127 2130 2131 2149 C3' G D 530 OK 2147 2150 2151 2172 C3' A D 531 OK 2170 2173 2174 2194 C3' C D 532 OK 2192 2195 2196 2214 C3' U D 533 OK 2212 2215 2216 2234 C3' C D 534 OK 2232 2235 2236 2254 C3' C D 535 OK 2252 2255 2256 2274 C3' A D 536 OK 2272 2275 2276 2296 C3' G D 537 OK 2294 2297 2298 2319 C3' A D 538 OK 2317 2320 2321 2341 C3' U D 539 OK 2339 2342 2343 2361 C3' C D 540 OK 2359 2362 2363 2381 C3' A D 541 OK 2379 2382 2383 2403 C3' G D 542 OK 2401 2404 2405 2426 C3' A D 543 OK 2424 2427 2428 2448 C3' A D 544 OK 2446 2449 2450 2470 C3' G D 545 OK 2468 2471 2472 2493 C3' G D 546 OK 2491 2494 2495 2516 C3' U D 547 OK 2514 2517 2518 2536 C3' U D 548 OK 2534 2537 2538 2556 C3' G D 549 OK 2554 2557 2558 2579 C3' C D 550 OK 2577 2580 2581 2599 C3' G D 551 OK 2597 2600 2601 2622 C3' U D 552 OK 2620 2623 2624 2642 C3' G D 553 OK 2640 2643 2644 2665 C3' U D 554 OK 2663 2666 2667 2685 C3' U D 555 OK 2683 2686 2687 2705 C3' C D 556 OK 2703 2706 2707 2725 C3' G D 557 OK 2723 2726 2727 2748 C3' A D 558 OK 2746 2749 2750 2770 C3' A D 559 OK 2768 2771 2772 2792 C3' U D 560 OK 2790 2793 2794 2812 C3' C D 561 OK 2810 2813 2814 2832 C3' A D 562 OK 2830 2833 2834 2854 C3' C D 563 OK 2852 2855 2856 2874 C3' G D 564 OK 2872 2875 2876 2897 C3' U D 565 OK 2895 2898 2899 2917 C3' C D 566 OK 2915 2918 2919 2937 C3' G D 567 OK 2935 2938 2939 2960 C3' G D 568 OK 2958 2961 2962 2983 C3' G D 569 OK 2981 2984 2985 3006 C3' G D 570 OK 3004 3007 3008 3029 C3' U D 571 OK 3027 3030 3031 3049 C3' C D 572 OK 3047 3050 3051 3069 C3' A D 573 OK 3067 3070 3071 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G C 501 OK 9 6 8 30 C4' A C 502 OK 32 29 31 52 C4' C C 503 OK 54 51 53 72 C4' C C 504 OK 74 71 73 92 C4' U C 505 OK 94 91 93 112 C4' C C 506 OK 114 111 113 132 C4' G C 507 OK 134 131 133 155 C4' U C 508 OK 157 154 156 175 C4' G C 509 OK 177 174 176 198 C4' G C 510 OK 200 197 199 221 C4' C C 511 OK 223 220 222 241 C4' G C 512 OK 243 240 242 264 C4' C C 513 OK 266 263 265 284 C4' A C 514 OK 286 283 285 306 C4' A C 515 OK 308 305 307 328 C4' U C 516 OK 330 327 329 348 C4' G C 518 OK 350 347 349 371 C4' G C 519 OK 373 370 372 394 C4' U C 520 OK 396 393 395 414 C4' A C 521 OK 416 413 415 436 C4' G C 522 OK 438 435 437 459 C4' C C 523 OK 461 458 460 479 C4' G C 524 OK 481 478 480 502 C4' C C 525 OK 504 501 503 522 C4' G C 526 OK 524 521 523 545 C4' U C 527 OK 547 544 546 565 C4' C C 528 OK 567 564 566 585 C4' U C 529 OK 587 584 586 605 C4' G C 530 OK 607 604 606 628 C4' A C 531 OK 630 627 629 650 C4' C C 532 OK 652 649 651 670 C4' U C 533 OK 672 669 671 690 C4' C C 534 OK 692 689 691 710 C4' C C 535 OK 712 709 711 730 C4' A C 536 OK 732 729 731 752 C4' G C 537 OK 754 751 753 775 C4' A C 538 OK 777 774 776 797 C4' U C 539 OK 799 796 798 817 C4' C C 540 OK 819 816 818 837 C4' A C 541 OK 839 836 838 859 C4' G C 542 OK 861 858 860 882 C4' A C 543 OK 884 881 883 904 C4' A C 544 OK 906 903 905 926 C4' G C 545 OK 928 925 927 949 C4' G C 546 OK 951 948 950 972 C4' U C 547 OK 974 971 973 992 C4' U C 548 OK 994 991 993 1012 C4' G C 549 OK 1014 1011 1013 1035 C4' C C 550 OK 1037 1034 1036 1055 C4' G C 551 OK 1057 1054 1056 1078 C4' U C 552 OK 1080 1077 1079 1098 C4' G C 553 OK 1100 1097 1099 1121 C4' U C 554 OK 1123 1120 1122 1141 C4' U C 555 OK 1143 1140 1142 1161 C4' C C 556 OK 1163 1160 1162 1181 C4' G C 557 OK 1183 1180 1182 1204 C4' A C 558 OK 1206 1203 1205 1226 C4' A C 559 OK 1228 1225 1227 1248 C4' U C 560 OK 1250 1247 1249 1268 C4' C C 561 OK 1270 1267 1269 1288 C4' A C 562 OK 1290 1287 1289 1310 C4' C C 563 OK 1312 1309 1311 1330 C4' G C 564 OK 1332 1329 1331 1353 C4' U C 565 OK 1355 1352 1354 1373 C4' C C 566 OK 1375 1372 1374 1393 C4' G C 567 OK 1395 1392 1394 1416 C4' G C 568 OK 1418 1415 1417 1439 C4' G C 569 OK 1441 1438 1440 1462 C4' G C 570 OK 1464 1461 1463 1485 C4' U C 571 OK 1487 1484 1486 1505 C4' C C 572 OK 1507 1504 1506 1525 C4' A C 573 OK 1527 1524 1526 1549 C4' G D 501 OK 1551 1548 1550 1572 C4' A D 502 OK 1574 1571 1573 1594 C4' C D 503 OK 1596 1593 1595 1614 C4' C D 504 OK 1616 1613 1615 1634 C4' U D 505 OK 1636 1633 1635 1654 C4' C D 506 OK 1656 1653 1655 1674 C4' G D 507 OK 1676 1673 1675 1697 C4' U D 508 OK 1699 1696 1698 1717 C4' G D 509 OK 1719 1716 1718 1740 C4' G D 510 OK 1742 1739 1741 1763 C4' C D 511 OK 1765 1762 1764 1783 C4' G D 512 OK 1785 1782 1784 1806 C4' C D 513 OK 1808 1805 1807 1826 C4' A D 514 OK 1828 1825 1827 1848 C4' A D 515 OK 1850 1847 1849 1870 C4' U D 516 OK 1872 1869 1871 1890 C4' G D 518 OK 1892 1889 1891 1913 C4' G D 519 OK 1915 1912 1914 1936 C4' U D 520 OK 1938 1935 1937 1956 C4' A D 521 OK 1958 1955 1957 1978 C4' G D 522 OK 1980 1977 1979 2001 C4' C D 523 OK 2003 2000 2002 2021 C4' G D 524 OK 2023 2020 2022 2044 C4' C D 525 OK 2046 2043 2045 2064 C4' G D 526 OK 2066 2063 2065 2087 C4' U D 527 OK 2089 2086 2088 2107 C4' C D 528 OK 2109 2106 2108 2127 C4' U D 529 OK 2129 2126 2128 2147 C4' G D 530 OK 2149 2146 2148 2170 C4' A D 531 OK 2172 2169 2171 2192 C4' C D 532 OK 2194 2191 2193 2212 C4' U D 533 OK 2214 2211 2213 2232 C4' C D 534 OK 2234 2231 2233 2252 C4' C D 535 OK 2254 2251 2253 2272 C4' A D 536 OK 2274 2271 2273 2294 C4' G D 537 OK 2296 2293 2295 2317 C4' A D 538 OK 2319 2316 2318 2339 C4' U D 539 OK 2341 2338 2340 2359 C4' C D 540 OK 2361 2358 2360 2379 C4' A D 541 OK 2381 2378 2380 2401 C4' G D 542 OK 2403 2400 2402 2424 C4' A D 543 OK 2426 2423 2425 2446 C4' A D 544 OK 2448 2445 2447 2468 C4' G D 545 OK 2470 2467 2469 2491 C4' G D 546 OK 2493 2490 2492 2514 C4' U D 547 OK 2516 2513 2515 2534 C4' U D 548 OK 2536 2533 2535 2554 C4' G D 549 OK 2556 2553 2555 2577 C4' C D 550 OK 2579 2576 2578 2597 C4' G D 551 OK 2599 2596 2598 2620 C4' U D 552 OK 2622 2619 2621 2640 C4' G D 553 OK 2642 2639 2641 2663 C4' U D 554 OK 2665 2662 2664 2683 C4' U D 555 OK 2685 2682 2684 2703 C4' C D 556 OK 2705 2702 2704 2723 C4' G D 557 OK 2725 2722 2724 2746 C4' A D 558 OK 2748 2745 2747 2768 C4' A D 559 OK 2770 2767 2769 2790 C4' U D 560 OK 2792 2789 2791 2810 C4' C D 561 OK 2812 2809 2811 2830 C4' A D 562 OK 2832 2829 2831 2852 C4' C D 563 OK 2854 2851 2853 2872 C4' G D 564 OK 2874 2871 2873 2895 C4' U D 565 OK 2897 2894 2896 2915 C4' C D 566 OK 2917 2914 2916 2935 C4' G D 567 OK 2937 2934 2936 2958 C4' G D 568 OK 2960 2957 2959 2981 C4' G D 569 OK 2983 2980 2982 3004 C4' G D 570 OK 3006 3003 3005 3027 C4' U D 571 OK 3029 3026 3028 3047 C4' C D 572 OK 3049 3046 3048 3067 C4' A D 573 OK 3069 3066 3068 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G C 501 5 7 29 C5' A C 502 28 30 51 C5' C C 503 50 52 71 C5' C C 504 70 72 91 C5' U C 505 90 92 111 C5' C C 506 110 112 131 C5' G C 507 130 132 154 C5' U C 508 153 155 174 C5' G C 509 173 175 197 C5' G C 510 196 198 220 C5' C C 511 219 221 240 C5' G C 512 239 241 263 C5' C C 513 262 264 283 C5' A C 514 282 284 305 C5' A C 515 304 306 327 C5' U C 516 326 328 347 C5' G C 518 346 348 370 C5' G C 519 369 371 393 C5' U C 520 392 394 413 C5' A C 521 412 414 435 C5' G C 522 434 436 458 C5' C C 523 457 459 478 C5' G C 524 477 479 501 C5' C C 525 500 502 521 C5' G C 526 520 522 544 C5' U C 527 543 545 564 C5' C C 528 563 565 584 C5' U C 529 583 585 604 C5' G C 530 603 605 627 C5' A C 531 626 628 649 C5' C C 532 648 650 669 C5' U C 533 668 670 689 C5' C C 534 688 690 709 C5' C C 535 708 710 729 C5' A C 536 728 730 751 C5' G C 537 750 752 774 C5' A C 538 773 775 796 C5' U C 539 795 797 816 C5' C C 540 815 817 836 C5' A C 541 835 837 858 C5' G C 542 857 859 881 C5' A C 543 880 882 903 C5' A C 544 902 904 925 C5' G C 545 924 926 948 C5' G C 546 947 949 971 C5' U C 547 970 972 991 C5' U C 548 990 992 1011 C5' G C 549 1010 1012 1034 C5' C C 550 1033 1035 1054 C5' G C 551 1053 1055 1077 C5' U C 552 1076 1078 1097 C5' G C 553 1096 1098 1120 C5' U C 554 1119 1121 1140 C5' U C 555 1139 1141 1160 C5' C C 556 1159 1161 1180 C5' G C 557 1179 1181 1203 C5' A C 558 1202 1204 1225 C5' A C 559 1224 1226 1247 C5' U C 560 1246 1248 1267 C5' C C 561 1266 1268 1287 C5' A C 562 1286 1288 1309 C5' C C 563 1308 1310 1329 C5' G C 564 1328 1330 1352 C5' U C 565 1351 1353 1372 C5' C C 566 1371 1373 1392 C5' G C 567 1391 1393 1415 C5' G C 568 1414 1416 1438 C5' G C 569 1437 1439 1461 C5' G C 570 1460 1462 1484 C5' U C 571 1483 1485 1504 C5' C C 572 1503 1505 1524 C5' A C 573 1523 1525 1548 C5' G D 501 1547 1549 1571 C5' A D 502 1570 1572 1593 C5' C D 503 1592 1594 1613 C5' C D 504 1612 1614 1633 C5' U D 505 1632 1634 1653 C5' C D 506 1652 1654 1673 C5' G D 507 1672 1674 1696 C5' U D 508 1695 1697 1716 C5' G D 509 1715 1717 1739 C5' G D 510 1738 1740 1762 C5' C D 511 1761 1763 1782 C5' G D 512 1781 1783 1805 C5' C D 513 1804 1806 1825 C5' A D 514 1824 1826 1847 C5' A D 515 1846 1848 1869 C5' U D 516 1868 1870 1889 C5' G D 518 1888 1890 1912 C5' G D 519 1911 1913 1935 C5' U D 520 1934 1936 1955 C5' A D 521 1954 1956 1977 C5' G D 522 1976 1978 2000 C5' C D 523 1999 2001 2020 C5' G D 524 2019 2021 2043 C5' C D 525 2042 2044 2063 C5' G D 526 2062 2064 2086 C5' U D 527 2085 2087 2106 C5' C D 528 2105 2107 2126 C5' U D 529 2125 2127 2146 C5' G D 530 2145 2147 2169 C5' A D 531 2168 2170 2191 C5' C D 532 2190 2192 2211 C5' U D 533 2210 2212 2231 C5' C D 534 2230 2232 2251 C5' C D 535 2250 2252 2271 C5' A D 536 2270 2272 2293 C5' G D 537 2292 2294 2316 C5' A D 538 2315 2317 2338 C5' U D 539 2337 2339 2358 C5' C D 540 2357 2359 2378 C5' A D 541 2377 2379 2400 C5' G D 542 2399 2401 2423 C5' A D 543 2422 2424 2445 C5' A D 544 2444 2446 2467 C5' G D 545 2466 2468 2490 C5' G D 546 2489 2491 2513 C5' U D 547 2512 2514 2533 C5' U D 548 2532 2534 2553 C5' G D 549 2552 2554 2576 C5' C D 550 2575 2577 2596 C5' G D 551 2595 2597 2619 C5' U D 552 2618 2620 2639 C5' G D 553 2638 2640 2662 C5' U D 554 2661 2663 2682 C5' U D 555 2681 2683 2702 C5' C D 556 2701 2703 2722 C5' G D 557 2721 2723 2745 C5' A D 558 2744 2746 2767 C5' A D 559 2766 2768 2789 C5' U D 560 2788 2790 2809 C5' C D 561 2808 2810 2829 C5' A D 562 2828 2830 2851 C5' C D 563 2850 2852 2871 C5' G D 564 2870 2872 2894 C5' U D 565 2893 2895 2914 C5' C D 566 2913 2915 2934 C5' G D 567 2933 2935 2957 C5' G D 568 2956 2958 2980 C5' G D 569 2979 2981 3003 C5' G D 570 3002 3004 3026 C5' U D 571 3025 3027 3046 C5' C D 572 3045 3047 3066 C5' A D 573 3065 3067 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G C 501 distorted distorted 3 4 5 25 P A C 502 distorted distorted 10 26 27 28 47 P C C 503 distorted distorted 33 48 49 50 67 P C C 504 distorted distorted 55 68 69 70 87 P U C 505 distorted distorted 75 88 89 90 107 P C C 506 distorted distorted 95 108 109 110 127 P G C 507 distorted distorted 115 128 129 130 150 P U C 508 distorted distorted 135 151 152 153 170 P G C 509 distorted distorted 158 171 172 173 193 P G C 510 distorted distorted 178 194 195 196 216 P C C 511 distorted distorted 201 217 218 219 236 P G C 512 distorted distorted 224 237 238 239 259 P C C 513 distorted distorted 244 260 261 262 279 P A C 514 distorted distorted 267 280 281 282 301 P A C 515 distorted distorted 287 302 303 304 323 P U C 516 distorted distorted 309 324 325 326 343 P G C 518 distorted distorted 331 344 345 346 366 P G C 519 distorted distorted 351 367 368 369 389 P U C 520 distorted distorted 374 390 391 392 409 P A C 521 distorted distorted 397 410 411 412 431 P G C 522 distorted distorted 417 432 433 434 454 P C C 523 distorted distorted 439 455 456 457 474 P G C 524 distorted distorted 462 475 476 477 497 P C C 525 distorted distorted 482 498 499 500 517 P G C 526 distorted distorted 505 518 519 520 540 P U C 527 distorted distorted 525 541 542 543 560 P C C 528 distorted distorted 548 561 562 563 580 P U C 529 distorted distorted 568 581 582 583 600 P G C 530 distorted distorted 588 601 602 603 623 P A C 531 distorted distorted 608 624 625 626 645 P C C 532 distorted distorted 631 646 647 648 665 P U C 533 distorted distorted 653 666 667 668 685 P C C 534 distorted distorted 673 686 687 688 705 P C C 535 distorted distorted 693 706 707 708 725 P A C 536 distorted distorted 713 726 727 728 747 P G C 537 distorted distorted 733 748 749 750 770 P A C 538 distorted distorted 755 771 772 773 792 P U C 539 distorted distorted 778 793 794 795 812 P C C 540 distorted distorted 800 813 814 815 832 P A C 541 distorted distorted 820 833 834 835 854 P G C 542 distorted distorted 840 855 856 857 877 P A C 543 distorted distorted 862 878 879 880 899 P A C 544 distorted distorted 885 900 901 902 921 P G C 545 distorted distorted 907 922 923 924 944 P G C 546 distorted distorted 929 945 946 947 967 P U C 547 distorted distorted 952 968 969 970 987 P U C 548 distorted distorted 975 988 989 990 1007 P G C 549 distorted distorted 995 1008 1009 1010 1030 P C C 550 distorted distorted 1015 1031 1032 1033 1050 P G C 551 distorted distorted 1038 1051 1052 1053 1073 P U C 552 distorted distorted 1058 1074 1075 1076 1093 P G C 553 distorted distorted 1081 1094 1095 1096 1116 P U C 554 distorted distorted 1101 1117 1118 1119 1136 P U C 555 distorted distorted 1124 1137 1138 1139 1156 P C C 556 distorted distorted 1144 1157 1158 1159 1176 P G C 557 distorted distorted 1164 1177 1178 1179 1199 P A C 558 distorted distorted 1184 1200 1201 1202 1221 P A C 559 distorted distorted 1207 1222 1223 1224 1243 P U C 560 distorted distorted 1229 1244 1245 1246 1263 P C C 561 distorted distorted 1251 1264 1265 1266 1283 P A C 562 distorted distorted 1271 1284 1285 1286 1305 P C C 563 distorted distorted 1291 1306 1307 1308 1325 P G C 564 distorted distorted 1313 1326 1327 1328 1348 P U C 565 distorted distorted 1333 1349 1350 1351 1368 P C C 566 distorted distorted 1356 1369 1370 1371 1388 P G C 567 distorted distorted 1376 1389 1390 1391 1411 P G C 568 distorted distorted 1396 1412 1413 1414 1434 P G C 569 distorted distorted 1419 1435 1436 1437 1457 P G C 570 distorted distorted 1442 1458 1459 1460 1480 P U C 571 distorted distorted 1465 1481 1482 1483 1500 P C C 572 distorted distorted 1488 1501 1502 1503 1520 P A C 573 distorted distorted 1508 1521 1522 1523 1544 P G D 501 distorted distorted 1545 1546 1547 1567 P A D 502 distorted distorted 1552 1568 1569 1570 1589 P C D 503 distorted distorted 1575 1590 1591 1592 1609 P C D 504 distorted distorted 1597 1610 1611 1612 1629 P U D 505 distorted distorted 1617 1630 1631 1632 1649 P C D 506 distorted distorted 1637 1650 1651 1652 1669 P G D 507 distorted distorted 1657 1670 1671 1672 1692 P U D 508 distorted distorted 1677 1693 1694 1695 1712 P G D 509 distorted distorted 1700 1713 1714 1715 1735 P G D 510 distorted distorted 1720 1736 1737 1738 1758 P C D 511 distorted distorted 1743 1759 1760 1761 1778 P G D 512 distorted distorted 1766 1779 1780 1781 1801 P C D 513 distorted distorted 1786 1802 1803 1804 1821 P A D 514 distorted distorted 1809 1822 1823 1824 1843 P A D 515 distorted distorted 1829 1844 1845 1846 1865 P U D 516 distorted distorted 1851 1866 1867 1868 1885 P G D 518 distorted distorted 1873 1886 1887 1888 1908 P G D 519 distorted distorted 1893 1909 1910 1911 1931 P U D 520 distorted distorted 1916 1932 1933 1934 1951 P A D 521 distorted distorted 1939 1952 1953 1954 1973 P G D 522 distorted distorted 1959 1974 1975 1976 1996 P C D 523 distorted distorted 1981 1997 1998 1999 2016 P G D 524 distorted distorted 2004 2017 2018 2019 2039 P C D 525 distorted distorted 2024 2040 2041 2042 2059 P G D 526 distorted distorted 2047 2060 2061 2062 2082 P U D 527 distorted distorted 2067 2083 2084 2085 2102 P C D 528 distorted distorted 2090 2103 2104 2105 2122 P U D 529 distorted distorted 2110 2123 2124 2125 2142 P G D 530 distorted distorted 2130 2143 2144 2145 2165 P A D 531 distorted distorted 2150 2166 2167 2168 2187 P C D 532 distorted distorted 2173 2188 2189 2190 2207 P U D 533 distorted distorted 2195 2208 2209 2210 2227 P C D 534 distorted distorted 2215 2228 2229 2230 2247 P C D 535 distorted distorted 2235 2248 2249 2250 2267 P A D 536 distorted distorted 2255 2268 2269 2270 2289 P G D 537 distorted distorted 2275 2290 2291 2292 2312 P A D 538 distorted distorted 2297 2313 2314 2315 2334 P U D 539 distorted distorted 2320 2335 2336 2337 2354 P C D 540 distorted distorted 2342 2355 2356 2357 2374 P A D 541 distorted distorted 2362 2375 2376 2377 2396 P G D 542 distorted distorted 2382 2397 2398 2399 2419 P A D 543 distorted distorted 2404 2420 2421 2422 2441 P A D 544 distorted distorted 2427 2442 2443 2444 2463 P G D 545 distorted distorted 2449 2464 2465 2466 2486 P G D 546 distorted distorted 2471 2487 2488 2489 2509 P U D 547 distorted distorted 2494 2510 2511 2512 2529 P U D 548 distorted distorted 2517 2530 2531 2532 2549 P G D 549 distorted distorted 2537 2550 2551 2552 2572 P C D 550 distorted distorted 2557 2573 2574 2575 2592 P G D 551 distorted distorted 2580 2593 2594 2595 2615 P U D 552 distorted distorted 2600 2616 2617 2618 2635 P G D 553 distorted distorted 2623 2636 2637 2638 2658 P U D 554 distorted distorted 2643 2659 2660 2661 2678 P U D 555 distorted distorted 2666 2679 2680 2681 2698 P C D 556 distorted distorted 2686 2699 2700 2701 2718 P G D 557 distorted distorted 2706 2719 2720 2721 2741 P A D 558 distorted distorted 2726 2742 2743 2744 2763 P A D 559 distorted distorted 2749 2764 2765 2766 2785 P U D 560 distorted distorted 2771 2786 2787 2788 2805 P C D 561 distorted distorted 2793 2806 2807 2808 2825 P A D 562 distorted distorted 2813 2826 2827 2828 2847 P C D 563 distorted distorted 2833 2848 2849 2850 2867 P G D 564 distorted distorted 2855 2868 2869 2870 2890 P U D 565 distorted distorted 2875 2891 2892 2893 2910 P C D 566 distorted distorted 2898 2911 2912 2913 2930 P G D 567 distorted distorted 2918 2931 2932 2933 2953 P G D 568 distorted distorted 2938 2954 2955 2956 2976 P G D 569 distorted distorted 2961 2977 2978 2979 2999 P G D 570 distorted distorted 2984 3000 3001 3002 3022 P U D 571 distorted distorted 3007 3023 3024 3025 3042 P C D 572 distorted distorted 3030 3043 3044 3045 3062 P A D 573 distorted distorted 3050 3063 3064 3065 ---------------------------------------------------------------------------------