ID code: '2ADT' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 1 alpha beta 4 27 10 7 43 C1' G A 2 alpha beta 38 61 44 41 77 C1' G A 3 alpha beta 72 95 78 75 111 C1' A A 4 alpha beta 106 128 112 109 144 C1' U A 5 alpha beta 139 159 145 142 174 C1' A A 6 alpha beta 169 191 175 172 207 C1' U A 7 alpha beta 202 222 208 205 237 C1' G A 8 alpha beta 232 255 238 235 271 C1' G A 9 alpha beta 266 289 272 269 305 C1' A A 10 alpha beta 300 322 306 303 338 C1' A A 11 alpha beta 333 355 339 336 371 C1' G A 12 alpha beta 366 389 372 369 405 C1' A A 13 alpha beta 400 422 406 403 438 C1' A A 14 alpha beta 433 455 439 436 471 C1' C A 15 alpha beta 466 486 472 469 502 C1' C A 16 alpha beta 497 517 503 500 533 C1' G A 17 alpha beta 528 551 534 531 567 C1' G A 18 alpha beta 562 585 568 565 601 C1' G A 19 alpha beta 596 619 602 599 635 C1' G A 20 alpha beta 630 653 636 633 669 C1' A A 21 alpha beta 664 686 670 667 702 C1' A A 22 alpha beta 697 719 703 700 735 C1' A A 23 alpha beta 730 752 736 733 768 C1' C A 24 alpha beta 763 783 769 766 799 C1' U A 25 alpha beta 794 814 800 797 829 C1' U A 26 alpha beta 824 844 830 827 859 C1' G A 27 alpha beta 854 877 860 857 893 C1' G A 28 alpha beta 888 911 894 891 927 C1' U A 29 alpha beta 922 942 928 925 957 C1' U A 30 alpha beta 952 972 958 955 987 C1' C A 31 alpha beta 982 1002 988 985 1018 C1' U A 32 alpha beta 1013 1033 1019 1016 1048 C1' U A 33 alpha beta 1043 1063 1049 1046 1078 C1' C A 34 alpha beta 1073 1093 1079 1076 1109 C1' C A 35 alpha beta 1104 1124 1110 1107 1140 C1' U A 36 alpha beta 1135 1155 1141 1138 1170 C1' A A 37 alpha beta 1165 1187 1171 1168 1203 C1' A A 38 alpha beta 1198 1220 1204 1201 1236 C1' G A 39 alpha beta 1231 1254 1237 1234 1270 C1' U A 40 alpha beta 1265 1285 1271 1268 1300 C1' C A 41 alpha beta 1295 1315 1301 1298 1331 C1' C A 42 alpha beta 1326 1346 1332 1329 1362 C1' U A 43 alpha beta 1357 1378 1363 1360 1391 C1' G B 44 alpha beta 1386 1409 1392 1389 1426 C1' G B 45 alpha beta 1421 1444 1427 1424 1460 C1' G B 46 alpha beta 1455 1478 1461 1458 1494 C1' A B 47 alpha beta 1489 1511 1495 1492 1527 C1' U B 48 alpha beta 1522 1542 1528 1525 1557 C1' A B 49 alpha beta 1552 1574 1558 1555 1590 C1' U B 50 alpha beta 1585 1605 1591 1588 1620 C1' G B 51 alpha beta 1615 1638 1621 1618 1654 C1' G B 52 alpha beta 1649 1672 1655 1652 1688 C1' A B 53 alpha beta 1683 1705 1689 1686 1721 C1' A B 54 alpha beta 1716 1738 1722 1719 1754 C1' G B 55 alpha beta 1749 1772 1755 1752 1788 C1' A B 56 alpha beta 1783 1805 1789 1786 1821 C1' A B 57 alpha beta 1816 1838 1822 1819 1854 C1' C B 58 alpha beta 1849 1869 1855 1852 1885 C1' C B 59 alpha beta 1880 1900 1886 1883 1916 C1' G B 60 alpha beta 1911 1934 1917 1914 1950 C1' G B 61 alpha beta 1945 1968 1951 1948 1984 C1' G B 62 alpha beta 1979 2002 1985 1982 2018 C1' G B 63 alpha beta 2013 2036 2019 2016 2052 C1' A B 64 alpha beta 2047 2069 2053 2050 2085 C1' A B 65 alpha beta 2080 2102 2086 2083 2118 C1' A B 66 alpha beta 2113 2135 2119 2116 2151 C1' C B 67 alpha beta 2146 2166 2152 2149 2182 C1' U B 68 alpha beta 2177 2197 2183 2180 2212 C1' U B 69 alpha beta 2207 2227 2213 2210 2242 C1' G B 70 alpha beta 2237 2260 2243 2240 2276 C1' G B 71 alpha beta 2271 2294 2277 2274 2310 C1' U B 72 alpha beta 2305 2325 2311 2308 2340 C1' U B 73 alpha beta 2335 2355 2341 2338 2370 C1' C B 74 alpha beta 2365 2385 2371 2368 2401 C1' U B 75 alpha beta 2396 2416 2402 2399 2431 C1' U B 76 alpha beta 2426 2446 2432 2429 2461 C1' C B 77 alpha beta 2456 2476 2462 2459 2492 C1' C B 78 alpha beta 2487 2507 2493 2490 2523 C1' U B 79 alpha beta 2518 2538 2524 2521 2553 C1' A B 80 alpha beta 2548 2570 2554 2551 2586 C1' A B 81 alpha beta 2581 2603 2587 2584 2619 C1' G B 82 alpha beta 2614 2637 2620 2617 2653 C1' U B 83 alpha beta 2648 2668 2654 2651 2683 C1' C B 84 alpha beta 2678 2698 2684 2681 2714 C1' C B 85 alpha beta 2709 2729 2715 2712 2745 C1' U B 86 alpha beta 2740 2761 2746 2743 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 1 OK OK 9 5 25 8 41 C2' G A 2 OK OK 43 39 59 42 75 C2' G A 3 OK OK 77 73 93 76 109 C2' A A 4 OK OK 111 107 126 110 142 C2' U A 5 OK OK 144 140 157 143 172 C2' A A 6 OK OK 174 170 189 173 205 C2' U A 7 OK OK 207 203 220 206 235 C2' G A 8 OK OK 237 233 253 236 269 C2' G A 9 OK OK 271 267 287 270 303 C2' A A 10 OK OK 305 301 320 304 336 C2' A A 11 OK OK 338 334 353 337 369 C2' G A 12 OK OK 371 367 387 370 403 C2' A A 13 OK OK 405 401 420 404 436 C2' A A 14 OK OK 438 434 453 437 469 C2' C A 15 OK OK 471 467 484 470 500 C2' C A 16 OK OK 502 498 515 501 531 C2' G A 17 OK OK 533 529 549 532 565 C2' G A 18 OK OK 567 563 583 566 599 C2' G A 19 OK OK 601 597 617 600 633 C2' G A 20 OK OK 635 631 651 634 667 C2' A A 21 OK OK 669 665 684 668 700 C2' A A 22 OK OK 702 698 717 701 733 C2' A A 23 OK OK 735 731 750 734 766 C2' C A 24 OK OK 768 764 781 767 797 C2' U A 25 OK OK 799 795 812 798 827 C2' U A 26 OK OK 829 825 842 828 857 C2' G A 27 OK OK 859 855 875 858 891 C2' G A 28 OK OK 893 889 909 892 925 C2' U A 29 OK OK 927 923 940 926 955 C2' U A 30 OK OK 957 953 970 956 985 C2' C A 31 OK OK 987 983 1000 986 1016 C2' U A 32 OK OK 1018 1014 1031 1017 1046 C2' U A 33 OK OK 1048 1044 1061 1047 1076 C2' C A 34 OK OK 1078 1074 1091 1077 1107 C2' C A 35 OK OK 1109 1105 1122 1108 1138 C2' U A 36 OK OK 1140 1136 1153 1139 1168 C2' A A 37 OK OK 1170 1166 1185 1169 1201 C2' A A 38 OK OK 1203 1199 1218 1202 1234 C2' G A 39 OK OK 1236 1232 1252 1235 1268 C2' U A 40 OK OK 1270 1266 1283 1269 1298 C2' C A 41 OK OK 1300 1296 1313 1299 1329 C2' C A 42 OK OK 1331 1327 1344 1330 1360 C2' U A 43 OK OK 1362 1358 1376 1361 1389 C2' G B 44 OK OK 1391 1387 1407 1390 1424 C2' G B 45 OK OK 1426 1422 1442 1425 1458 C2' G B 46 OK OK 1460 1456 1476 1459 1492 C2' A B 47 OK OK 1494 1490 1509 1493 1525 C2' U B 48 OK OK 1527 1523 1540 1526 1555 C2' A B 49 OK OK 1557 1553 1572 1556 1588 C2' U B 50 OK OK 1590 1586 1603 1589 1618 C2' G B 51 OK OK 1620 1616 1636 1619 1652 C2' G B 52 OK OK 1654 1650 1670 1653 1686 C2' A B 53 OK OK 1688 1684 1703 1687 1719 C2' A B 54 OK OK 1721 1717 1736 1720 1752 C2' G B 55 OK OK 1754 1750 1770 1753 1786 C2' A B 56 OK OK 1788 1784 1803 1787 1819 C2' A B 57 OK OK 1821 1817 1836 1820 1852 C2' C B 58 OK OK 1854 1850 1867 1853 1883 C2' C B 59 OK OK 1885 1881 1898 1884 1914 C2' G B 60 OK OK 1916 1912 1932 1915 1948 C2' G B 61 OK OK 1950 1946 1966 1949 1982 C2' G B 62 OK OK 1984 1980 2000 1983 2016 C2' G B 63 OK OK 2018 2014 2034 2017 2050 C2' A B 64 OK OK 2052 2048 2067 2051 2083 C2' A B 65 OK OK 2085 2081 2100 2084 2116 C2' A B 66 OK OK 2118 2114 2133 2117 2149 C2' C B 67 OK OK 2151 2147 2164 2150 2180 C2' U B 68 OK OK 2182 2178 2195 2181 2210 C2' U B 69 OK OK 2212 2208 2225 2211 2240 C2' G B 70 OK OK 2242 2238 2258 2241 2274 C2' G B 71 OK OK 2276 2272 2292 2275 2308 C2' U B 72 OK OK 2310 2306 2323 2309 2338 C2' U B 73 OK OK 2340 2336 2353 2339 2368 C2' C B 74 OK OK 2370 2366 2383 2369 2399 C2' U B 75 OK OK 2401 2397 2414 2400 2429 C2' U B 76 OK OK 2431 2427 2444 2430 2459 C2' C B 77 OK OK 2461 2457 2474 2460 2490 C2' C B 78 OK OK 2492 2488 2505 2491 2521 C2' U B 79 OK OK 2523 2519 2536 2522 2551 C2' A B 80 OK OK 2553 2549 2568 2552 2584 C2' A B 81 OK OK 2586 2582 2601 2585 2617 C2' G B 82 OK OK 2619 2615 2635 2618 2651 C2' U B 83 OK OK 2653 2649 2666 2652 2681 C2' C B 84 OK OK 2683 2679 2696 2682 2712 C2' C B 85 OK OK 2714 2710 2727 2713 2743 C2' U B 86 OK OK 2745 2741 2759 2744 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 1 OK OK 3 24 6 7 39 C3' G A 2 OK OK 37 58 40 41 73 C3' G A 3 OK OK 71 92 74 75 107 C3' A A 4 OK OK 105 125 108 109 140 C3' U A 5 OK OK 138 156 141 142 170 C3' A A 6 OK OK 168 188 171 172 203 C3' U A 7 OK OK 201 219 204 205 233 C3' G A 8 OK OK 231 252 234 235 267 C3' G A 9 OK OK 265 286 268 269 301 C3' A A 10 OK OK 299 319 302 303 334 C3' A A 11 OK OK 332 352 335 336 367 C3' G A 12 OK OK 365 386 368 369 401 C3' A A 13 OK OK 399 419 402 403 434 C3' A A 14 OK OK 432 452 435 436 467 C3' C A 15 OK OK 465 483 468 469 498 C3' C A 16 OK OK 496 514 499 500 529 C3' G A 17 OK OK 527 548 530 531 563 C3' G A 18 OK OK 561 582 564 565 597 C3' G A 19 OK OK 595 616 598 599 631 C3' G A 20 OK OK 629 650 632 633 665 C3' A A 21 OK OK 663 683 666 667 698 C3' A A 22 OK OK 696 716 699 700 731 C3' A A 23 OK OK 729 749 732 733 764 C3' C A 24 OK OK 762 780 765 766 795 C3' U A 25 OK OK 793 811 796 797 825 C3' U A 26 OK OK 823 841 826 827 855 C3' G A 27 OK OK 853 874 856 857 889 C3' G A 28 OK OK 887 908 890 891 923 C3' U A 29 OK OK 921 939 924 925 953 C3' U A 30 OK OK 951 969 954 955 983 C3' C A 31 OK OK 981 999 984 985 1014 C3' U A 32 OK OK 1012 1030 1015 1016 1044 C3' U A 33 OK OK 1042 1060 1045 1046 1074 C3' C A 34 OK OK 1072 1090 1075 1076 1105 C3' C A 35 OK OK 1103 1121 1106 1107 1136 C3' U A 36 OK OK 1134 1152 1137 1138 1166 C3' A A 37 OK OK 1164 1184 1167 1168 1199 C3' A A 38 OK OK 1197 1217 1200 1201 1232 C3' G A 39 OK OK 1230 1251 1233 1234 1266 C3' U A 40 OK OK 1264 1282 1267 1268 1296 C3' C A 41 OK OK 1294 1312 1297 1298 1327 C3' C A 42 OK OK 1325 1343 1328 1329 1358 C3' U A 43 OK OK 1356 1374 1359 1360 1387 C3' G B 44 OK OK 1385 1406 1388 1389 1422 C3' G B 45 OK OK 1420 1441 1423 1424 1456 C3' G B 46 OK OK 1454 1475 1457 1458 1490 C3' A B 47 OK OK 1488 1508 1491 1492 1523 C3' U B 48 OK OK 1521 1539 1524 1525 1553 C3' A B 49 OK OK 1551 1571 1554 1555 1586 C3' U B 50 OK OK 1584 1602 1587 1588 1616 C3' G B 51 OK OK 1614 1635 1617 1618 1650 C3' G B 52 OK OK 1648 1669 1651 1652 1684 C3' A B 53 OK OK 1682 1702 1685 1686 1717 C3' A B 54 OK OK 1715 1735 1718 1719 1750 C3' G B 55 OK OK 1748 1769 1751 1752 1784 C3' A B 56 OK OK 1782 1802 1785 1786 1817 C3' A B 57 OK OK 1815 1835 1818 1819 1850 C3' C B 58 OK OK 1848 1866 1851 1852 1881 C3' C B 59 OK OK 1879 1897 1882 1883 1912 C3' G B 60 OK OK 1910 1931 1913 1914 1946 C3' G B 61 OK OK 1944 1965 1947 1948 1980 C3' G B 62 OK OK 1978 1999 1981 1982 2014 C3' G B 63 OK OK 2012 2033 2015 2016 2048 C3' A B 64 OK OK 2046 2066 2049 2050 2081 C3' A B 65 OK OK 2079 2099 2082 2083 2114 C3' A B 66 OK OK 2112 2132 2115 2116 2147 C3' C B 67 OK OK 2145 2163 2148 2149 2178 C3' U B 68 OK OK 2176 2194 2179 2180 2208 C3' U B 69 OK OK 2206 2224 2209 2210 2238 C3' G B 70 OK OK 2236 2257 2239 2240 2272 C3' G B 71 OK OK 2270 2291 2273 2274 2306 C3' U B 72 OK OK 2304 2322 2307 2308 2336 C3' U B 73 OK OK 2334 2352 2337 2338 2366 C3' C B 74 OK OK 2364 2382 2367 2368 2397 C3' U B 75 OK OK 2395 2413 2398 2399 2427 C3' U B 76 OK OK 2425 2443 2428 2429 2457 C3' C B 77 OK OK 2455 2473 2458 2459 2488 C3' C B 78 OK OK 2486 2504 2489 2490 2519 C3' U B 79 OK OK 2517 2535 2520 2521 2549 C3' A B 80 OK OK 2547 2567 2550 2551 2582 C3' A B 81 OK OK 2580 2600 2583 2584 2615 C3' G B 82 OK OK 2613 2634 2616 2617 2649 C3' U B 83 OK OK 2647 2665 2650 2651 2679 C3' C B 84 OK OK 2677 2695 2680 2681 2710 C3' C B 85 OK OK 2708 2726 2711 2712 2741 C3' U B 86 OK OK 2739 2757 2742 2743 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 1 OK OK 5 23 2 4 37 C4' G A 2 OK OK 39 57 36 38 71 C4' G A 3 OK OK 73 91 70 72 105 C4' A A 4 OK OK 107 124 104 106 138 C4' U A 5 OK OK 140 155 137 139 168 C4' A A 6 OK OK 170 187 167 169 201 C4' U A 7 OK OK 203 218 200 202 231 C4' G A 8 OK OK 233 251 230 232 265 C4' G A 9 OK OK 267 285 264 266 299 C4' A A 10 OK OK 301 318 298 300 332 C4' A A 11 OK OK 334 351 331 333 365 C4' G A 12 OK OK 367 385 364 366 399 C4' A A 13 OK OK 401 418 398 400 432 C4' A A 14 OK OK 434 451 431 433 465 C4' C A 15 OK OK 467 482 464 466 496 C4' C A 16 OK OK 498 513 495 497 527 C4' G A 17 OK OK 529 547 526 528 561 C4' G A 18 OK OK 563 581 560 562 595 C4' G A 19 OK OK 597 615 594 596 629 C4' G A 20 OK OK 631 649 628 630 663 C4' A A 21 OK OK 665 682 662 664 696 C4' A A 22 OK OK 698 715 695 697 729 C4' A A 23 OK OK 731 748 728 730 762 C4' C A 24 OK OK 764 779 761 763 793 C4' U A 25 OK OK 795 810 792 794 823 C4' U A 26 OK OK 825 840 822 824 853 C4' G A 27 OK OK 855 873 852 854 887 C4' G A 28 OK OK 889 907 886 888 921 C4' U A 29 OK OK 923 938 920 922 951 C4' U A 30 OK OK 953 968 950 952 981 C4' C A 31 OK OK 983 998 980 982 1012 C4' U A 32 OK OK 1014 1029 1011 1013 1042 C4' U A 33 OK OK 1044 1059 1041 1043 1072 C4' C A 34 OK OK 1074 1089 1071 1073 1103 C4' C A 35 OK OK 1105 1120 1102 1104 1134 C4' U A 36 OK OK 1136 1151 1133 1135 1164 C4' A A 37 OK OK 1166 1183 1163 1165 1197 C4' A A 38 OK OK 1199 1216 1196 1198 1230 C4' G A 39 OK OK 1232 1250 1229 1231 1264 C4' U A 40 OK OK 1266 1281 1263 1265 1294 C4' C A 41 OK OK 1296 1311 1293 1295 1325 C4' C A 42 OK OK 1327 1342 1324 1326 1356 C4' U A 43 OK OK 1358 1373 1355 1357 1385 C4' G B 44 OK OK 1387 1405 1384 1386 1420 C4' G B 45 OK OK 1422 1440 1419 1421 1454 C4' G B 46 OK OK 1456 1474 1453 1455 1488 C4' A B 47 OK OK 1490 1507 1487 1489 1521 C4' U B 48 OK OK 1523 1538 1520 1522 1551 C4' A B 49 OK OK 1553 1570 1550 1552 1584 C4' U B 50 OK OK 1586 1601 1583 1585 1614 C4' G B 51 OK OK 1616 1634 1613 1615 1648 C4' G B 52 OK OK 1650 1668 1647 1649 1682 C4' A B 53 OK OK 1684 1701 1681 1683 1715 C4' A B 54 OK OK 1717 1734 1714 1716 1748 C4' G B 55 OK OK 1750 1768 1747 1749 1782 C4' A B 56 OK OK 1784 1801 1781 1783 1815 C4' A B 57 OK OK 1817 1834 1814 1816 1848 C4' C B 58 OK OK 1850 1865 1847 1849 1879 C4' C B 59 OK OK 1881 1896 1878 1880 1910 C4' G B 60 OK OK 1912 1930 1909 1911 1944 C4' G B 61 OK OK 1946 1964 1943 1945 1978 C4' G B 62 OK OK 1980 1998 1977 1979 2012 C4' G B 63 OK OK 2014 2032 2011 2013 2046 C4' A B 64 OK OK 2048 2065 2045 2047 2079 C4' A B 65 OK OK 2081 2098 2078 2080 2112 C4' A B 66 OK OK 2114 2131 2111 2113 2145 C4' C B 67 OK OK 2147 2162 2144 2146 2176 C4' U B 68 OK OK 2178 2193 2175 2177 2206 C4' U B 69 OK OK 2208 2223 2205 2207 2236 C4' G B 70 OK OK 2238 2256 2235 2237 2270 C4' G B 71 OK OK 2272 2290 2269 2271 2304 C4' U B 72 OK OK 2306 2321 2303 2305 2334 C4' U B 73 OK OK 2336 2351 2333 2335 2364 C4' C B 74 OK OK 2366 2381 2363 2365 2395 C4' U B 75 OK OK 2397 2412 2394 2396 2425 C4' U B 76 OK OK 2427 2442 2424 2426 2455 C4' C B 77 OK OK 2457 2472 2454 2456 2486 C4' C B 78 OK OK 2488 2503 2485 2487 2517 C4' U B 79 OK OK 2519 2534 2516 2518 2547 C4' A B 80 OK OK 2549 2566 2546 2548 2580 C4' A B 81 OK OK 2582 2599 2579 2581 2613 C4' G B 82 OK OK 2615 2633 2612 2614 2647 C4' U B 83 OK OK 2649 2664 2646 2648 2677 C4' C B 84 OK OK 2679 2694 2676 2678 2708 C4' C B 85 OK OK 2710 2725 2707 2709 2739 C4' U B 86 OK OK 2741 2756 2738 2740 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 1 OK OK 1 21 22 3 36 C5' G A 2 OK OK 35 55 56 37 70 C5' G A 3 OK OK 69 89 90 71 104 C5' A A 4 OK OK 103 122 123 105 137 C5' U A 5 OK OK 136 153 154 138 167 C5' A A 6 OK OK 166 185 186 168 200 C5' U A 7 OK OK 199 216 217 201 230 C5' G A 8 OK OK 229 249 250 231 264 C5' G A 9 OK OK 263 283 284 265 298 C5' A A 10 OK OK 297 316 317 299 331 C5' A A 11 OK OK 330 349 350 332 364 C5' G A 12 OK OK 363 383 384 365 398 C5' A A 13 OK OK 397 416 417 399 431 C5' A A 14 OK OK 430 449 450 432 464 C5' C A 15 OK OK 463 480 481 465 495 C5' C A 16 OK OK 494 511 512 496 526 C5' G A 17 OK OK 525 545 546 527 560 C5' G A 18 OK OK 559 579 580 561 594 C5' G A 19 OK OK 593 613 614 595 628 C5' G A 20 OK OK 627 647 648 629 662 C5' A A 21 OK OK 661 680 681 663 695 C5' A A 22 OK OK 694 713 714 696 728 C5' A A 23 OK OK 727 746 747 729 761 C5' C A 24 OK OK 760 777 778 762 792 C5' U A 25 OK OK 791 808 809 793 822 C5' U A 26 OK OK 821 838 839 823 852 C5' G A 27 OK OK 851 871 872 853 886 C5' G A 28 OK OK 885 905 906 887 920 C5' U A 29 OK OK 919 936 937 921 950 C5' U A 30 OK OK 949 966 967 951 980 C5' C A 31 OK OK 979 996 997 981 1011 C5' U A 32 OK OK 1010 1027 1028 1012 1041 C5' U A 33 OK OK 1040 1057 1058 1042 1071 C5' C A 34 OK OK 1070 1087 1088 1072 1102 C5' C A 35 OK OK 1101 1118 1119 1103 1133 C5' U A 36 OK OK 1132 1149 1150 1134 1163 C5' A A 37 OK OK 1162 1181 1182 1164 1196 C5' A A 38 OK OK 1195 1214 1215 1197 1229 C5' G A 39 OK OK 1228 1248 1249 1230 1263 C5' U A 40 OK OK 1262 1279 1280 1264 1293 C5' C A 41 OK OK 1292 1309 1310 1294 1324 C5' C A 42 OK OK 1323 1340 1341 1325 1355 C5' U A 43 OK OK 1354 1371 1372 1356 1384 C5' G B 44 OK OK 1383 1403 1404 1385 1419 C5' G B 45 OK OK 1418 1438 1439 1420 1453 C5' G B 46 OK OK 1452 1472 1473 1454 1487 C5' A B 47 OK OK 1486 1505 1506 1488 1520 C5' U B 48 OK OK 1519 1536 1537 1521 1550 C5' A B 49 OK OK 1549 1568 1569 1551 1583 C5' U B 50 OK OK 1582 1599 1600 1584 1613 C5' G B 51 OK OK 1612 1632 1633 1614 1647 C5' G B 52 OK OK 1646 1666 1667 1648 1681 C5' A B 53 OK OK 1680 1699 1700 1682 1714 C5' A B 54 OK OK 1713 1732 1733 1715 1747 C5' G B 55 OK OK 1746 1766 1767 1748 1781 C5' A B 56 OK OK 1780 1799 1800 1782 1814 C5' A B 57 OK OK 1813 1832 1833 1815 1847 C5' C B 58 OK OK 1846 1863 1864 1848 1878 C5' C B 59 OK OK 1877 1894 1895 1879 1909 C5' G B 60 OK OK 1908 1928 1929 1910 1943 C5' G B 61 OK OK 1942 1962 1963 1944 1977 C5' G B 62 OK OK 1976 1996 1997 1978 2011 C5' G B 63 OK OK 2010 2030 2031 2012 2045 C5' A B 64 OK OK 2044 2063 2064 2046 2078 C5' A B 65 OK OK 2077 2096 2097 2079 2111 C5' A B 66 OK OK 2110 2129 2130 2112 2144 C5' C B 67 OK OK 2143 2160 2161 2145 2175 C5' U B 68 OK OK 2174 2191 2192 2176 2205 C5' U B 69 OK OK 2204 2221 2222 2206 2235 C5' G B 70 OK OK 2234 2254 2255 2236 2269 C5' G B 71 OK OK 2268 2288 2289 2270 2303 C5' U B 72 OK OK 2302 2319 2320 2304 2333 C5' U B 73 OK OK 2332 2349 2350 2334 2363 C5' C B 74 OK OK 2362 2379 2380 2364 2394 C5' U B 75 OK OK 2393 2410 2411 2395 2424 C5' U B 76 OK OK 2423 2440 2441 2425 2454 C5' C B 77 OK OK 2453 2470 2471 2455 2485 C5' C B 78 OK OK 2484 2501 2502 2486 2516 C5' U B 79 OK OK 2515 2532 2533 2517 2546 C5' A B 80 OK OK 2545 2564 2565 2547 2579 C5' A B 81 OK OK 2578 2597 2598 2580 2612 C5' G B 82 OK OK 2611 2631 2632 2613 2646 C5' U B 83 OK OK 2645 2662 2663 2647 2676 C5' C B 84 OK OK 2675 2692 2693 2677 2707 C5' C B 85 OK OK 2706 2723 2724 2708 2738 C5' U B 86 OK OK 2737 2754 2755 2739 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 32 P G A 2 distorted distorted 6 33 34 35 66 P G A 3 distorted distorted 40 67 68 69 100 P A A 4 distorted distorted 74 101 102 103 133 P U A 5 distorted distorted 108 134 135 136 163 P A A 6 distorted distorted 141 164 165 166 196 P U A 7 distorted distorted 171 197 198 199 226 P G A 8 distorted distorted 204 227 228 229 260 P G A 9 distorted distorted 234 261 262 263 294 P A A 10 distorted distorted 268 295 296 297 327 P A A 11 distorted distorted 302 328 329 330 360 P G A 12 distorted distorted 335 361 362 363 394 P A A 13 distorted distorted 368 395 396 397 427 P A A 14 distorted distorted 402 428 429 430 460 P C A 15 distorted distorted 435 461 462 463 491 P C A 16 distorted distorted 468 492 493 494 522 P G A 17 distorted distorted 499 523 524 525 556 P G A 18 distorted distorted 530 557 558 559 590 P G A 19 distorted distorted 564 591 592 593 624 P G A 20 distorted distorted 598 625 626 627 658 P A A 21 distorted distorted 632 659 660 661 691 P A A 22 distorted distorted 666 692 693 694 724 P A A 23 distorted distorted 699 725 726 727 757 P C A 24 distorted distorted 732 758 759 760 788 P U A 25 distorted distorted 765 789 790 791 818 P U A 26 distorted distorted 796 819 820 821 848 P G A 27 distorted distorted 826 849 850 851 882 P G A 28 distorted distorted 856 883 884 885 916 P U A 29 distorted distorted 890 917 918 919 946 P U A 30 distorted distorted 924 947 948 949 976 P C A 31 distorted distorted 954 977 978 979 1007 P U A 32 distorted distorted 984 1008 1009 1010 1037 P U A 33 distorted distorted 1015 1038 1039 1040 1067 P C A 34 distorted distorted 1045 1068 1069 1070 1098 P C A 35 distorted distorted 1075 1099 1100 1101 1129 P U A 36 distorted distorted 1106 1130 1131 1132 1159 P A A 37 distorted distorted 1137 1160 1161 1162 1192 P A A 38 distorted distorted 1167 1193 1194 1195 1225 P G A 39 distorted distorted 1200 1226 1227 1228 1259 P U A 40 distorted distorted 1233 1260 1261 1262 1289 P C A 41 distorted distorted 1267 1290 1291 1292 1320 P C A 42 distorted distorted 1297 1321 1322 1323 1351 P U A 43 distorted distorted 1328 1352 1353 1354 1415 P G B 45 distorted distorted 1388 1416 1417 1418 1449 P G B 46 distorted distorted 1423 1450 1451 1452 1483 P A B 47 distorted distorted 1457 1484 1485 1486 1516 P U B 48 distorted distorted 1491 1517 1518 1519 1546 P A B 49 distorted distorted 1524 1547 1548 1549 1579 P U B 50 distorted distorted 1554 1580 1581 1582 1609 P G B 51 distorted distorted 1587 1610 1611 1612 1643 P G B 52 distorted distorted 1617 1644 1645 1646 1677 P A B 53 distorted distorted 1651 1678 1679 1680 1710 P A B 54 distorted distorted 1685 1711 1712 1713 1743 P G B 55 distorted distorted 1718 1744 1745 1746 1777 P A B 56 distorted distorted 1751 1778 1779 1780 1810 P A B 57 distorted distorted 1785 1811 1812 1813 1843 P C B 58 distorted distorted 1818 1844 1845 1846 1874 P C B 59 distorted distorted 1851 1875 1876 1877 1905 P G B 60 distorted distorted 1882 1906 1907 1908 1939 P G B 61 distorted distorted 1913 1940 1941 1942 1973 P G B 62 distorted distorted 1947 1974 1975 1976 2007 P G B 63 distorted distorted 1981 2008 2009 2010 2041 P A B 64 distorted distorted 2015 2042 2043 2044 2074 P A B 65 distorted distorted 2049 2075 2076 2077 2107 P A B 66 distorted distorted 2082 2108 2109 2110 2140 P C B 67 distorted distorted 2115 2141 2142 2143 2171 P U B 68 distorted distorted 2148 2172 2173 2174 2201 P U B 69 distorted distorted 2179 2202 2203 2204 2231 P G B 70 distorted distorted 2209 2232 2233 2234 2265 P G B 71 distorted distorted 2239 2266 2267 2268 2299 P U B 72 distorted distorted 2273 2300 2301 2302 2329 P U B 73 distorted distorted 2307 2330 2331 2332 2359 P C B 74 distorted distorted 2337 2360 2361 2362 2390 P U B 75 distorted distorted 2367 2391 2392 2393 2420 P U B 76 distorted distorted 2398 2421 2422 2423 2450 P C B 77 distorted distorted 2428 2451 2452 2453 2481 P C B 78 distorted distorted 2458 2482 2483 2484 2512 P U B 79 distorted distorted 2489 2513 2514 2515 2542 P A B 80 distorted distorted 2520 2543 2544 2545 2575 P A B 81 distorted distorted 2550 2576 2577 2578 2608 P G B 82 distorted distorted 2583 2609 2610 2611 2642 P U B 83 distorted distorted 2616 2643 2644 2645 2672 P C B 84 distorted distorted 2650 2673 2674 2675 2703 P C B 85 distorted distorted 2680 2704 2705 2706 2734 P U B 86 distorted distorted 2711 2735 2736 2737 ---------------------------------------------------------------------------------