ID code: '1ZX7' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 2 beta 4 10 7 32 C1' U A 3 beta 27 33 30 52 C1' G A 4 beta 47 53 50 75 C1' G A 5 beta 70 76 73 98 C1' U A 6 beta 93 99 96 118 C1' G A 7 beta 113 119 116 141 C1' A A 8 beta 136 142 139 163 C1' A A 9 beta 158 164 161 185 C1' G A 10 beta 180 186 183 208 C1' U A 11 beta 203 209 206 228 C1' C A 12 beta 223 229 226 248 C1' G A 13 beta 243 249 246 271 C1' C A 14 beta 266 272 269 291 C1' G A 15 beta 286 292 289 314 C1' G A 16 beta 309 315 312 335 C1' C B 21 beta 330 336 333 355 C1' G B 22 beta 350 356 353 378 C1' C B 23 beta 373 379 376 398 C1' G B 24 beta 393 399 396 421 C1' U B 25 beta 416 422 419 441 C1' C B 26 beta 436 442 439 461 C1' A B 27 beta 456 462 459 483 C1' C B 28 beta 478 484 481 503 C1' A B 29 beta 498 504 501 525 C1' C B 30 beta 520 526 523 545 C1' C B 31 beta 540 546 543 565 C1' A B 32 beta 560 566 563 587 C1' C B 33 beta 582 588 585 607 C1' C B 34 beta 602 608 605 625 C1' G C 2 beta 620 626 623 648 C1' U C 3 beta 643 649 646 668 C1' G C 4 beta 663 669 666 691 C1' G C 5 beta 686 692 689 714 C1' U C 6 beta 709 715 712 734 C1' G C 7 beta 729 735 732 757 C1' A C 8 beta 752 758 755 779 C1' A C 9 beta 774 780 777 801 C1' G C 10 beta 796 802 799 824 C1' U C 11 beta 819 825 822 844 C1' C C 12 beta 839 845 842 864 C1' G C 13 beta 859 865 862 887 C1' C C 14 beta 882 888 885 907 C1' G C 15 beta 902 908 905 930 C1' G C 16 beta 925 931 928 951 C1' C D 21 beta 946 952 949 971 C1' G D 22 beta 966 972 969 994 C1' C D 23 beta 989 995 992 1014 C1' G D 24 beta 1009 1015 1012 1037 C1' U D 25 beta 1032 1038 1035 1057 C1' C D 26 beta 1052 1058 1055 1077 C1' A D 27 beta 1072 1078 1075 1099 C1' C D 28 beta 1094 1100 1097 1119 C1' A D 29 beta 1114 1120 1117 1141 C1' C D 30 beta 1136 1142 1139 1161 C1' C D 31 beta 1156 1162 1159 1181 C1' A D 32 beta 1176 1182 1179 1203 C1' C D 33 beta 1198 1204 1201 1223 C1' C D 34 beta 1218 1224 1221 1241 C1' G E 2 beta 1236 1242 1239 1264 C1' U E 3 beta 1259 1265 1262 1284 C1' G E 4 beta 1279 1285 1282 1307 C1' G E 5 beta 1302 1308 1305 1330 C1' U E 6 beta 1325 1331 1328 1350 C1' G E 7 beta 1345 1351 1348 1373 C1' A E 8 beta 1368 1374 1371 1395 C1' A E 9 beta 1390 1396 1393 1417 C1' G E 10 beta 1412 1418 1415 1440 C1' U E 11 beta 1435 1441 1438 1460 C1' C E 12 beta 1455 1461 1458 1480 C1' G E 13 beta 1475 1481 1478 1503 C1' C E 14 beta 1498 1504 1501 1523 C1' G E 15 beta 1518 1524 1521 1546 C1' G E 16 beta 1541 1547 1544 1567 C1' C F 21 beta 1562 1568 1565 1587 C1' G F 22 beta 1582 1588 1585 1610 C1' C F 23 beta 1605 1611 1608 1630 C1' G F 24 beta 1625 1631 1628 1653 C1' U F 25 beta 1648 1654 1651 1673 C1' C F 26 beta 1668 1674 1671 1693 C1' A F 27 beta 1688 1694 1691 1715 C1' C F 28 beta 1710 1716 1713 1735 C1' A F 29 beta 1730 1736 1733 1757 C1' C F 30 beta 1752 1758 1755 1777 C1' C F 31 beta 1772 1778 1775 1797 C1' A F 32 beta 1792 1798 1795 1819 C1' C F 33 beta 1814 1820 1817 1839 C1' C F 34 beta 1834 1840 1837 1857 C1' G G 2 beta 1852 1858 1855 1880 C1' U G 3 beta 1875 1881 1878 1900 C1' G G 4 beta 1895 1901 1898 1923 C1' G G 5 beta 1918 1924 1921 1946 C1' U G 6 beta 1941 1947 1944 1966 C1' G G 7 beta 1961 1967 1964 1989 C1' A G 8 beta 1984 1990 1987 2011 C1' A G 9 beta 2006 2012 2009 2033 C1' G G 10 beta 2028 2034 2031 2056 C1' U G 11 beta 2051 2057 2054 2076 C1' C G 12 beta 2071 2077 2074 2096 C1' G G 13 beta 2091 2097 2094 2119 C1' C G 14 beta 2114 2120 2117 2139 C1' G G 15 beta 2134 2140 2137 2162 C1' G G 16 beta 2157 2163 2160 2183 C1' C H 21 beta 2178 2184 2181 2203 C1' G H 22 beta 2198 2204 2201 2226 C1' C H 23 beta 2221 2227 2224 2246 C1' G H 24 beta 2241 2247 2244 2269 C1' U H 25 beta 2264 2270 2267 2289 C1' C H 26 beta 2284 2290 2287 2309 C1' A H 27 beta 2304 2310 2307 2331 C1' C H 28 beta 2326 2332 2329 2351 C1' A H 29 beta 2346 2352 2349 2373 C1' C H 30 beta 2368 2374 2371 2393 C1' C H 31 beta 2388 2394 2391 2413 C1' A H 32 beta 2408 2414 2411 2435 C1' C H 33 beta 2430 2436 2433 2455 C1' C H 34 beta 2450 2456 2453 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 2 OK 9 5 8 30 C2' U A 3 OK 32 28 31 50 C2' G A 4 OK 52 48 51 73 C2' G A 5 OK 75 71 74 96 C2' U A 6 OK 98 94 97 116 C2' G A 7 OK 118 114 117 139 C2' A A 8 OK 141 137 140 161 C2' A A 9 OK 163 159 162 183 C2' G A 10 OK 185 181 184 206 C2' U A 11 OK 208 204 207 226 C2' C A 12 OK 228 224 227 246 C2' G A 13 OK 248 244 247 269 C2' C A 14 OK 271 267 270 289 C2' G A 15 OK 291 287 290 312 C2' G A 16 OK 314 310 313 333 C2' C B 21 OK 335 331 334 353 C2' G B 22 OK 355 351 354 376 C2' C B 23 OK 378 374 377 396 C2' G B 24 OK 398 394 397 419 C2' U B 25 OK 421 417 420 439 C2' C B 26 OK 441 437 440 459 C2' A B 27 OK 461 457 460 481 C2' C B 28 OK 483 479 482 501 C2' A B 29 OK 503 499 502 523 C2' C B 30 OK 525 521 524 543 C2' C B 31 OK 545 541 544 563 C2' A B 32 OK 565 561 564 585 C2' C B 33 OK 587 583 586 605 C2' C B 34 OK 607 603 606 623 C2' G C 2 OK 625 621 624 646 C2' U C 3 OK 648 644 647 666 C2' G C 4 OK 668 664 667 689 C2' G C 5 OK 691 687 690 712 C2' U C 6 OK 714 710 713 732 C2' G C 7 OK 734 730 733 755 C2' A C 8 OK 757 753 756 777 C2' A C 9 OK 779 775 778 799 C2' G C 10 OK 801 797 800 822 C2' U C 11 OK 824 820 823 842 C2' C C 12 OK 844 840 843 862 C2' G C 13 OK 864 860 863 885 C2' C C 14 OK 887 883 886 905 C2' G C 15 OK 907 903 906 928 C2' G C 16 OK 930 926 929 949 C2' C D 21 OK 951 947 950 969 C2' G D 22 OK 971 967 970 992 C2' C D 23 OK 994 990 993 1012 C2' G D 24 OK 1014 1010 1013 1035 C2' U D 25 OK 1037 1033 1036 1055 C2' C D 26 OK 1057 1053 1056 1075 C2' A D 27 OK 1077 1073 1076 1097 C2' C D 28 OK 1099 1095 1098 1117 C2' A D 29 OK 1119 1115 1118 1139 C2' C D 30 OK 1141 1137 1140 1159 C2' C D 31 OK 1161 1157 1160 1179 C2' A D 32 OK 1181 1177 1180 1201 C2' C D 33 OK 1203 1199 1202 1221 C2' C D 34 OK 1223 1219 1222 1239 C2' G E 2 OK 1241 1237 1240 1262 C2' U E 3 OK 1264 1260 1263 1282 C2' G E 4 OK 1284 1280 1283 1305 C2' G E 5 OK 1307 1303 1306 1328 C2' U E 6 OK 1330 1326 1329 1348 C2' G E 7 OK 1350 1346 1349 1371 C2' A E 8 OK 1373 1369 1372 1393 C2' A E 9 OK 1395 1391 1394 1415 C2' G E 10 OK 1417 1413 1416 1438 C2' U E 11 OK 1440 1436 1439 1458 C2' C E 12 OK 1460 1456 1459 1478 C2' G E 13 OK 1480 1476 1479 1501 C2' C E 14 OK 1503 1499 1502 1521 C2' G E 15 OK 1523 1519 1522 1544 C2' G E 16 OK 1546 1542 1545 1565 C2' C F 21 OK 1567 1563 1566 1585 C2' G F 22 OK 1587 1583 1586 1608 C2' C F 23 OK 1610 1606 1609 1628 C2' G F 24 OK 1630 1626 1629 1651 C2' U F 25 OK 1653 1649 1652 1671 C2' C F 26 OK 1673 1669 1672 1691 C2' A F 27 OK 1693 1689 1692 1713 C2' C F 28 OK 1715 1711 1714 1733 C2' A F 29 OK 1735 1731 1734 1755 C2' C F 30 OK 1757 1753 1756 1775 C2' C F 31 OK 1777 1773 1776 1795 C2' A F 32 OK 1797 1793 1796 1817 C2' C F 33 OK 1819 1815 1818 1837 C2' C F 34 OK 1839 1835 1838 1855 C2' G G 2 OK 1857 1853 1856 1878 C2' U G 3 OK 1880 1876 1879 1898 C2' G G 4 OK 1900 1896 1899 1921 C2' G G 5 OK 1923 1919 1922 1944 C2' U G 6 OK 1946 1942 1945 1964 C2' G G 7 OK 1966 1962 1965 1987 C2' A G 8 OK 1989 1985 1988 2009 C2' A G 9 OK 2011 2007 2010 2031 C2' G G 10 OK 2033 2029 2032 2054 C2' U G 11 OK 2056 2052 2055 2074 C2' C G 12 OK 2076 2072 2075 2094 C2' G G 13 OK 2096 2092 2095 2117 C2' C G 14 OK 2119 2115 2118 2137 C2' G G 15 OK 2139 2135 2138 2160 C2' G G 16 OK 2162 2158 2161 2181 C2' C H 21 OK 2183 2179 2182 2201 C2' G H 22 OK 2203 2199 2202 2224 C2' C H 23 OK 2226 2222 2225 2244 C2' G H 24 OK 2246 2242 2245 2267 C2' U H 25 OK 2269 2265 2268 2287 C2' C H 26 OK 2289 2285 2288 2307 C2' A H 27 OK 2309 2305 2308 2329 C2' C H 28 OK 2331 2327 2330 2349 C2' A H 29 OK 2351 2347 2350 2371 C2' C H 30 OK 2373 2369 2372 2391 C2' C H 31 OK 2393 2389 2392 2411 C2' A H 32 OK 2413 2409 2412 2433 C2' C H 33 OK 2435 2431 2434 2453 C2' C H 34 OK 2455 2451 2454 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 2 OK 3 6 7 28 C3' U A 3 OK 26 29 30 48 C3' G A 4 OK 46 49 50 71 C3' G A 5 OK 69 72 73 94 C3' U A 6 OK 92 95 96 114 C3' G A 7 OK 112 115 116 137 C3' A A 8 OK 135 138 139 159 C3' A A 9 OK 157 160 161 181 C3' G A 10 OK 179 182 183 204 C3' U A 11 OK 202 205 206 224 C3' C A 12 OK 222 225 226 244 C3' G A 13 OK 242 245 246 267 C3' C A 14 OK 265 268 269 287 C3' G A 15 OK 285 288 289 310 C3' G A 16 OK 308 311 312 331 C3' C B 21 OK 329 332 333 351 C3' G B 22 OK 349 352 353 374 C3' C B 23 OK 372 375 376 394 C3' G B 24 OK 392 395 396 417 C3' U B 25 OK 415 418 419 437 C3' C B 26 OK 435 438 439 457 C3' A B 27 OK 455 458 459 479 C3' C B 28 OK 477 480 481 499 C3' A B 29 OK 497 500 501 521 C3' C B 30 OK 519 522 523 541 C3' C B 31 OK 539 542 543 561 C3' A B 32 OK 559 562 563 583 C3' C B 33 OK 581 584 585 603 C3' C B 34 OK 601 604 605 621 C3' G C 2 OK 619 622 623 644 C3' U C 3 OK 642 645 646 664 C3' G C 4 OK 662 665 666 687 C3' G C 5 OK 685 688 689 710 C3' U C 6 OK 708 711 712 730 C3' G C 7 OK 728 731 732 753 C3' A C 8 OK 751 754 755 775 C3' A C 9 OK 773 776 777 797 C3' G C 10 OK 795 798 799 820 C3' U C 11 OK 818 821 822 840 C3' C C 12 OK 838 841 842 860 C3' G C 13 OK 858 861 862 883 C3' C C 14 OK 881 884 885 903 C3' G C 15 OK 901 904 905 926 C3' G C 16 OK 924 927 928 947 C3' C D 21 OK 945 948 949 967 C3' G D 22 OK 965 968 969 990 C3' C D 23 OK 988 991 992 1010 C3' G D 24 OK 1008 1011 1012 1033 C3' U D 25 OK 1031 1034 1035 1053 C3' C D 26 OK 1051 1054 1055 1073 C3' A D 27 OK 1071 1074 1075 1095 C3' C D 28 OK 1093 1096 1097 1115 C3' A D 29 OK 1113 1116 1117 1137 C3' C D 30 OK 1135 1138 1139 1157 C3' C D 31 OK 1155 1158 1159 1177 C3' A D 32 OK 1175 1178 1179 1199 C3' C D 33 OK 1197 1200 1201 1219 C3' C D 34 OK 1217 1220 1221 1237 C3' G E 2 OK 1235 1238 1239 1260 C3' U E 3 OK 1258 1261 1262 1280 C3' G E 4 OK 1278 1281 1282 1303 C3' G E 5 OK 1301 1304 1305 1326 C3' U E 6 OK 1324 1327 1328 1346 C3' G E 7 OK 1344 1347 1348 1369 C3' A E 8 OK 1367 1370 1371 1391 C3' A E 9 OK 1389 1392 1393 1413 C3' G E 10 OK 1411 1414 1415 1436 C3' U E 11 OK 1434 1437 1438 1456 C3' C E 12 OK 1454 1457 1458 1476 C3' G E 13 OK 1474 1477 1478 1499 C3' C E 14 OK 1497 1500 1501 1519 C3' G E 15 OK 1517 1520 1521 1542 C3' G E 16 OK 1540 1543 1544 1563 C3' C F 21 OK 1561 1564 1565 1583 C3' G F 22 OK 1581 1584 1585 1606 C3' C F 23 OK 1604 1607 1608 1626 C3' G F 24 OK 1624 1627 1628 1649 C3' U F 25 OK 1647 1650 1651 1669 C3' C F 26 OK 1667 1670 1671 1689 C3' A F 27 OK 1687 1690 1691 1711 C3' C F 28 OK 1709 1712 1713 1731 C3' A F 29 OK 1729 1732 1733 1753 C3' C F 30 OK 1751 1754 1755 1773 C3' C F 31 OK 1771 1774 1775 1793 C3' A F 32 OK 1791 1794 1795 1815 C3' C F 33 OK 1813 1816 1817 1835 C3' C F 34 OK 1833 1836 1837 1853 C3' G G 2 OK 1851 1854 1855 1876 C3' U G 3 OK 1874 1877 1878 1896 C3' G G 4 OK 1894 1897 1898 1919 C3' G G 5 OK 1917 1920 1921 1942 C3' U G 6 OK 1940 1943 1944 1962 C3' G G 7 OK 1960 1963 1964 1985 C3' A G 8 OK 1983 1986 1987 2007 C3' A G 9 OK 2005 2008 2009 2029 C3' G G 10 OK 2027 2030 2031 2052 C3' U G 11 OK 2050 2053 2054 2072 C3' C G 12 OK 2070 2073 2074 2092 C3' G G 13 OK 2090 2093 2094 2115 C3' C G 14 OK 2113 2116 2117 2135 C3' G G 15 OK 2133 2136 2137 2158 C3' G G 16 OK 2156 2159 2160 2179 C3' C H 21 OK 2177 2180 2181 2199 C3' G H 22 OK 2197 2200 2201 2222 C3' C H 23 OK 2220 2223 2224 2242 C3' G H 24 OK 2240 2243 2244 2265 C3' U H 25 OK 2263 2266 2267 2285 C3' C H 26 OK 2283 2286 2287 2305 C3' A H 27 OK 2303 2306 2307 2327 C3' C H 28 OK 2325 2328 2329 2347 C3' A H 29 OK 2345 2348 2349 2369 C3' C H 30 OK 2367 2370 2371 2389 C3' C H 31 OK 2387 2390 2391 2409 C3' A H 32 OK 2407 2410 2411 2431 C3' C H 33 OK 2429 2432 2433 2451 C3' C H 34 OK 2449 2452 2453 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 2 OK 5 2 4 26 C4' U A 3 OK 28 25 27 46 C4' G A 4 OK 48 45 47 69 C4' G A 5 OK 71 68 70 92 C4' U A 6 OK 94 91 93 112 C4' G A 7 OK 114 111 113 135 C4' A A 8 OK 137 134 136 157 C4' A A 9 OK 159 156 158 179 C4' G A 10 OK 181 178 180 202 C4' U A 11 OK 204 201 203 222 C4' C A 12 OK 224 221 223 242 C4' G A 13 OK 244 241 243 265 C4' C A 14 OK 267 264 266 285 C4' G A 15 OK 287 284 286 308 C4' G A 16 OK 310 307 309 329 C4' C B 21 OK 331 328 330 349 C4' G B 22 OK 351 348 350 372 C4' C B 23 OK 374 371 373 392 C4' G B 24 OK 394 391 393 415 C4' U B 25 OK 417 414 416 435 C4' C B 26 OK 437 434 436 455 C4' A B 27 OK 457 454 456 477 C4' C B 28 OK 479 476 478 497 C4' A B 29 OK 499 496 498 519 C4' C B 30 OK 521 518 520 539 C4' C B 31 OK 541 538 540 559 C4' A B 32 OK 561 558 560 581 C4' C B 33 OK 583 580 582 601 C4' C B 34 OK 603 600 602 619 C4' G C 2 OK 621 618 620 642 C4' U C 3 OK 644 641 643 662 C4' G C 4 OK 664 661 663 685 C4' G C 5 OK 687 684 686 708 C4' U C 6 OK 710 707 709 728 C4' G C 7 OK 730 727 729 751 C4' A C 8 OK 753 750 752 773 C4' A C 9 OK 775 772 774 795 C4' G C 10 OK 797 794 796 818 C4' U C 11 OK 820 817 819 838 C4' C C 12 OK 840 837 839 858 C4' G C 13 OK 860 857 859 881 C4' C C 14 OK 883 880 882 901 C4' G C 15 OK 903 900 902 924 C4' G C 16 OK 926 923 925 945 C4' C D 21 OK 947 944 946 965 C4' G D 22 OK 967 964 966 988 C4' C D 23 OK 990 987 989 1008 C4' G D 24 OK 1010 1007 1009 1031 C4' U D 25 OK 1033 1030 1032 1051 C4' C D 26 OK 1053 1050 1052 1071 C4' A D 27 OK 1073 1070 1072 1093 C4' C D 28 OK 1095 1092 1094 1113 C4' A D 29 OK 1115 1112 1114 1135 C4' C D 30 OK 1137 1134 1136 1155 C4' C D 31 OK 1157 1154 1156 1175 C4' A D 32 OK 1177 1174 1176 1197 C4' C D 33 OK 1199 1196 1198 1217 C4' C D 34 OK 1219 1216 1218 1235 C4' G E 2 OK 1237 1234 1236 1258 C4' U E 3 OK 1260 1257 1259 1278 C4' G E 4 OK 1280 1277 1279 1301 C4' G E 5 OK 1303 1300 1302 1324 C4' U E 6 OK 1326 1323 1325 1344 C4' G E 7 OK 1346 1343 1345 1367 C4' A E 8 OK 1369 1366 1368 1389 C4' A E 9 OK 1391 1388 1390 1411 C4' G E 10 OK 1413 1410 1412 1434 C4' U E 11 OK 1436 1433 1435 1454 C4' C E 12 OK 1456 1453 1455 1474 C4' G E 13 OK 1476 1473 1475 1497 C4' C E 14 OK 1499 1496 1498 1517 C4' G E 15 OK 1519 1516 1518 1540 C4' G E 16 OK 1542 1539 1541 1561 C4' C F 21 OK 1563 1560 1562 1581 C4' G F 22 OK 1583 1580 1582 1604 C4' C F 23 OK 1606 1603 1605 1624 C4' G F 24 OK 1626 1623 1625 1647 C4' U F 25 OK 1649 1646 1648 1667 C4' C F 26 OK 1669 1666 1668 1687 C4' A F 27 OK 1689 1686 1688 1709 C4' C F 28 OK 1711 1708 1710 1729 C4' A F 29 OK 1731 1728 1730 1751 C4' C F 30 OK 1753 1750 1752 1771 C4' C F 31 OK 1773 1770 1772 1791 C4' A F 32 OK 1793 1790 1792 1813 C4' C F 33 OK 1815 1812 1814 1833 C4' C F 34 OK 1835 1832 1834 1851 C4' G G 2 OK 1853 1850 1852 1874 C4' U G 3 OK 1876 1873 1875 1894 C4' G G 4 OK 1896 1893 1895 1917 C4' G G 5 OK 1919 1916 1918 1940 C4' U G 6 OK 1942 1939 1941 1960 C4' G G 7 OK 1962 1959 1961 1983 C4' A G 8 OK 1985 1982 1984 2005 C4' A G 9 OK 2007 2004 2006 2027 C4' G G 10 OK 2029 2026 2028 2050 C4' U G 11 OK 2052 2049 2051 2070 C4' C G 12 OK 2072 2069 2071 2090 C4' G G 13 OK 2092 2089 2091 2113 C4' C G 14 OK 2115 2112 2114 2133 C4' G G 15 OK 2135 2132 2134 2156 C4' G G 16 OK 2158 2155 2157 2177 C4' C H 21 OK 2179 2176 2178 2197 C4' G H 22 OK 2199 2196 2198 2220 C4' C H 23 OK 2222 2219 2221 2240 C4' G H 24 OK 2242 2239 2241 2263 C4' U H 25 OK 2265 2262 2264 2283 C4' C H 26 OK 2285 2282 2284 2303 C4' A H 27 OK 2305 2302 2304 2325 C4' C H 28 OK 2327 2324 2326 2345 C4' A H 29 OK 2347 2344 2346 2367 C4' C H 30 OK 2369 2366 2368 2387 C4' C H 31 OK 2389 2386 2388 2407 C4' A H 32 OK 2409 2406 2408 2429 C4' C H 33 OK 2431 2428 2430 2449 C4' C H 34 OK 2451 2448 2450 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 2 1 3 25 C5' U A 3 24 26 45 C5' G A 4 44 46 68 C5' G A 5 67 69 91 C5' U A 6 90 92 111 C5' G A 7 110 112 134 C5' A A 8 133 135 156 C5' A A 9 155 157 178 C5' G A 10 177 179 201 C5' U A 11 200 202 221 C5' C A 12 220 222 241 C5' G A 13 240 242 264 C5' C A 14 263 265 284 C5' G A 15 283 285 307 C5' G A 16 306 308 328 C5' C B 21 327 329 348 C5' G B 22 347 349 371 C5' C B 23 370 372 391 C5' G B 24 390 392 414 C5' U B 25 413 415 434 C5' C B 26 433 435 454 C5' A B 27 453 455 476 C5' C B 28 475 477 496 C5' A B 29 495 497 518 C5' C B 30 517 519 538 C5' C B 31 537 539 558 C5' A B 32 557 559 580 C5' C B 33 579 581 600 C5' C B 34 599 601 618 C5' G C 2 617 619 641 C5' U C 3 640 642 661 C5' G C 4 660 662 684 C5' G C 5 683 685 707 C5' U C 6 706 708 727 C5' G C 7 726 728 750 C5' A C 8 749 751 772 C5' A C 9 771 773 794 C5' G C 10 793 795 817 C5' U C 11 816 818 837 C5' C C 12 836 838 857 C5' G C 13 856 858 880 C5' C C 14 879 881 900 C5' G C 15 899 901 923 C5' G C 16 922 924 944 C5' C D 21 943 945 964 C5' G D 22 963 965 987 C5' C D 23 986 988 1007 C5' G D 24 1006 1008 1030 C5' U D 25 1029 1031 1050 C5' C D 26 1049 1051 1070 C5' A D 27 1069 1071 1092 C5' C D 28 1091 1093 1112 C5' A D 29 1111 1113 1134 C5' C D 30 1133 1135 1154 C5' C D 31 1153 1155 1174 C5' A D 32 1173 1175 1196 C5' C D 33 1195 1197 1216 C5' C D 34 1215 1217 1234 C5' G E 2 1233 1235 1257 C5' U E 3 1256 1258 1277 C5' G E 4 1276 1278 1300 C5' G E 5 1299 1301 1323 C5' U E 6 1322 1324 1343 C5' G E 7 1342 1344 1366 C5' A E 8 1365 1367 1388 C5' A E 9 1387 1389 1410 C5' G E 10 1409 1411 1433 C5' U E 11 1432 1434 1453 C5' C E 12 1452 1454 1473 C5' G E 13 1472 1474 1496 C5' C E 14 1495 1497 1516 C5' G E 15 1515 1517 1539 C5' G E 16 1538 1540 1560 C5' C F 21 1559 1561 1580 C5' G F 22 1579 1581 1603 C5' C F 23 1602 1604 1623 C5' G F 24 1622 1624 1646 C5' U F 25 1645 1647 1666 C5' C F 26 1665 1667 1686 C5' A F 27 1685 1687 1708 C5' C F 28 1707 1709 1728 C5' A F 29 1727 1729 1750 C5' C F 30 1749 1751 1770 C5' C F 31 1769 1771 1790 C5' A F 32 1789 1791 1812 C5' C F 33 1811 1813 1832 C5' C F 34 1831 1833 1850 C5' G G 2 1849 1851 1873 C5' U G 3 1872 1874 1893 C5' G G 4 1892 1894 1916 C5' G G 5 1915 1917 1939 C5' U G 6 1938 1940 1959 C5' G G 7 1958 1960 1982 C5' A G 8 1981 1983 2004 C5' A G 9 2003 2005 2026 C5' G G 10 2025 2027 2049 C5' U G 11 2048 2050 2069 C5' C G 12 2068 2070 2089 C5' G G 13 2088 2090 2112 C5' C G 14 2111 2113 2132 C5' G G 15 2131 2133 2155 C5' G G 16 2154 2156 2176 C5' C H 21 2175 2177 2196 C5' G H 22 2195 2197 2219 C5' C H 23 2218 2220 2239 C5' G H 24 2238 2240 2262 C5' U H 25 2261 2263 2282 C5' C H 26 2281 2283 2302 C5' A H 27 2301 2303 2324 C5' C H 28 2323 2325 2344 C5' A H 29 2343 2345 2366 C5' C H 30 2365 2367 2386 C5' C H 31 2385 2387 2406 C5' A H 32 2405 2407 2428 C5' C H 33 2427 2429 2448 C5' C H 34 2447 2449 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P U A 3 distorted distorted 6 22 23 24 41 P G A 4 distorted distorted 29 42 43 44 64 P G A 5 distorted distorted 49 65 66 67 87 P U A 6 distorted distorted 72 88 89 90 107 P G A 7 distorted distorted 95 108 109 110 130 P A A 8 distorted distorted 115 131 132 133 152 P A A 9 distorted distorted 138 153 154 155 174 P G A 10 distorted distorted 160 175 176 177 197 P U A 11 distorted distorted 182 198 199 200 217 P C A 12 distorted distorted 205 218 219 220 237 P G A 13 distorted distorted 225 238 239 240 260 P C A 14 distorted distorted 245 261 262 263 280 P G A 15 distorted distorted 268 281 282 283 303 P G A 16 distorted distorted 288 304 305 306 344 P G B 22 distorted distorted 332 345 346 347 367 P C B 23 distorted distorted 352 368 369 370 387 P G B 24 distorted distorted 375 388 389 390 410 P U B 25 distorted distorted 395 411 412 413 430 P C B 26 distorted distorted 418 431 432 433 450 P A B 27 distorted distorted 438 451 452 453 472 P C B 28 distorted distorted 458 473 474 475 492 P A B 29 distorted distorted 480 493 494 495 514 P C B 30 distorted distorted 500 515 516 517 534 P C B 31 distorted distorted 522 535 536 537 554 P A B 32 distorted distorted 542 555 556 557 576 P C B 33 distorted distorted 562 577 578 579 596 P C B 34 distorted distorted 584 597 598 599 637 P U C 3 distorted distorted 622 638 639 640 657 P G C 4 distorted distorted 645 658 659 660 680 P G C 5 distorted distorted 665 681 682 683 703 P U C 6 distorted distorted 688 704 705 706 723 P G C 7 distorted distorted 711 724 725 726 746 P A C 8 distorted distorted 731 747 748 749 768 P A C 9 distorted distorted 754 769 770 771 790 P G C 10 distorted distorted 776 791 792 793 813 P U C 11 distorted distorted 798 814 815 816 833 P C C 12 distorted distorted 821 834 835 836 853 P G C 13 distorted distorted 841 854 855 856 876 P C C 14 distorted distorted 861 877 878 879 896 P G C 15 distorted distorted 884 897 898 899 919 P G C 16 distorted distorted 904 920 921 922 960 P G D 22 distorted distorted 948 961 962 963 983 P C D 23 distorted distorted 968 984 985 986 1003 P G D 24 distorted distorted 991 1004 1005 1006 1026 P U D 25 distorted distorted 1011 1027 1028 1029 1046 P C D 26 distorted distorted 1034 1047 1048 1049 1066 P A D 27 distorted distorted 1054 1067 1068 1069 1088 P C D 28 distorted distorted 1074 1089 1090 1091 1108 P A D 29 distorted distorted 1096 1109 1110 1111 1130 P C D 30 distorted distorted 1116 1131 1132 1133 1150 P C D 31 distorted distorted 1138 1151 1152 1153 1170 P A D 32 distorted distorted 1158 1171 1172 1173 1192 P C D 33 distorted distorted 1178 1193 1194 1195 1212 P C D 34 distorted distorted 1200 1213 1214 1215 1253 P U E 3 distorted distorted 1238 1254 1255 1256 1273 P G E 4 distorted distorted 1261 1274 1275 1276 1296 P G E 5 distorted distorted 1281 1297 1298 1299 1319 P U E 6 distorted distorted 1304 1320 1321 1322 1339 P G E 7 distorted distorted 1327 1340 1341 1342 1362 P A E 8 distorted distorted 1347 1363 1364 1365 1384 P A E 9 distorted distorted 1370 1385 1386 1387 1406 P G E 10 distorted distorted 1392 1407 1408 1409 1429 P U E 11 distorted distorted 1414 1430 1431 1432 1449 P C E 12 distorted distorted 1437 1450 1451 1452 1469 P G E 13 distorted distorted 1457 1470 1471 1472 1492 P C E 14 distorted distorted 1477 1493 1494 1495 1512 P G E 15 distorted distorted 1500 1513 1514 1515 1535 P G E 16 distorted distorted 1520 1536 1537 1538 1576 P G F 22 distorted distorted 1564 1577 1578 1579 1599 P C F 23 distorted distorted 1584 1600 1601 1602 1619 P G F 24 distorted distorted 1607 1620 1621 1622 1642 P U F 25 distorted distorted 1627 1643 1644 1645 1662 P C F 26 distorted distorted 1650 1663 1664 1665 1682 P A F 27 distorted distorted 1670 1683 1684 1685 1704 P C F 28 distorted distorted 1690 1705 1706 1707 1724 P A F 29 distorted distorted 1712 1725 1726 1727 1746 P C F 30 distorted distorted 1732 1747 1748 1749 1766 P C F 31 distorted distorted 1754 1767 1768 1769 1786 P A F 32 distorted distorted 1774 1787 1788 1789 1808 P C F 33 distorted distorted 1794 1809 1810 1811 1828 P C F 34 distorted distorted 1816 1829 1830 1831 1869 P U G 3 distorted distorted 1854 1870 1871 1872 1889 P G G 4 distorted distorted 1877 1890 1891 1892 1912 P G G 5 distorted distorted 1897 1913 1914 1915 1935 P U G 6 distorted distorted 1920 1936 1937 1938 1955 P G G 7 distorted distorted 1943 1956 1957 1958 1978 P A G 8 distorted distorted 1963 1979 1980 1981 2000 P A G 9 distorted distorted 1986 2001 2002 2003 2022 P G G 10 distorted distorted 2008 2023 2024 2025 2045 P U G 11 distorted distorted 2030 2046 2047 2048 2065 P C G 12 distorted distorted 2053 2066 2067 2068 2085 P G G 13 distorted distorted 2073 2086 2087 2088 2108 P C G 14 distorted distorted 2093 2109 2110 2111 2128 P G G 15 distorted distorted 2116 2129 2130 2131 2151 P G G 16 distorted distorted 2136 2152 2153 2154 2192 P G H 22 distorted distorted 2180 2193 2194 2195 2215 P C H 23 distorted distorted 2200 2216 2217 2218 2235 P G H 24 distorted distorted 2223 2236 2237 2238 2258 P U H 25 distorted distorted 2243 2259 2260 2261 2278 P C H 26 distorted distorted 2266 2279 2280 2281 2298 P A H 27 distorted distorted 2286 2299 2300 2301 2320 P C H 28 distorted distorted 2306 2321 2322 2323 2340 P A H 29 distorted distorted 2328 2341 2342 2343 2362 P C H 30 distorted distorted 2348 2363 2364 2365 2382 P C H 31 distorted distorted 2370 2383 2384 2385 2402 P A H 32 distorted distorted 2390 2403 2404 2405 2424 P C H 33 distorted distorted 2410 2425 2426 2427 2444 P C H 34 distorted distorted 2432 2445 2446 2447 ---------------------------------------------------------------------------------