ID code: '1ZN1' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P G B1906 2 P G B1907 3 P C B1908 4 P C B1909 5 P G B1910 6 P U B1911 7 P A B1912 8 P A B1913 9 P C B1914 10 P U B1915 11 P A B1916 12 P U B1917 13 P A B1918 14 P A B1919 15 P C B1920 16 P G B1921 17 P G B1922 18 P U B1923 19 P C B1924 20 P C B1925 21 P U B1926 22 P A B1927 23 P A B1928 24 P G B1929 25 P G B1930 26 P U B1931 27 P A B1932 28 P G B1933 29 P C B1934 30 P G B1935 31 P A B1936 32 P A B1937 33 P A B1938 34 P U B1939 35 P U B1940 36 P C B1941 37 P C B1942 38 P U B1943 39 P U B1944 40 P G B1945 41 P U B1946 42 P C B1947 43 P G B1948 44 P G B1949 45 P G B1950 46 P U B1951 47 P A B1952 48 P A B1953 49 P G B1954 50 P U B1955 51 P U B1956 52 P C B1957 53 P C B1958 54 P G B1959 55 P A B1960 56 P C B1961 57 P C B1962 58 P U B1963 59 P G B1964 61 P G C1405 62 P U C1406 63 P C C1407 64 P A C1408 65 P C C1409 66 P A C1410 67 P C C1411 68 P C C1412 69 P A C1413 70 P U C1414 71 P G C1415 72 P G C1416 73 P G C1417 74 P A C1418 75 P G C1419 76 P U C1420 77 P G C1421 78 P G C1422 79 P G C1423 80 P U C1424 81 P A C1476 82 P U C1477 83 P U C1478 84 P C C1479 85 P A C1480 86 P U C1481 87 P G C1482 88 P A C1483 89 P C C1484 90 P U C1485 91 P G C1486 92 P G C1487 93 P G C1488 94 P G C1489 95 P U C1490 96 P G C1491 97 P A C1492 98 P A C1493 99 P G C1494 100 P U C1495 ---------------------------------------------------------------------------------