ID code: '1Z43' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 138 beta 4 10 7 32 C1' C A 139 beta 27 33 30 52 C1' U A 140 beta 47 53 50 72 C1' C A 141 beta 67 73 70 92 C1' G A 142 beta 87 93 90 115 C1' G A 143 beta 110 116 113 138 C1' C A 144 beta 133 139 136 158 C1' G A 145 beta 153 159 156 181 C1' G A 146 beta 176 182 179 204 C1' U A 147 beta 199 205 202 224 C1' G A 148 beta 219 225 222 247 C1' G A 149 beta 242 248 245 270 C1' G A 150 beta 265 271 268 293 C1' G A 151 beta 288 294 291 316 C1' G A 152 beta 311 317 314 339 C1' A A 153 beta 334 340 337 361 C1' G A 154 beta 356 362 359 384 C1' C A 155 beta 379 385 382 404 C1' A A 156 beta 399 405 402 426 C1' U A 157 beta 421 427 424 446 C1' C A 158 beta 441 447 444 466 C1' U A 159 beta 461 467 464 486 C1' C A 160 beta 481 487 484 506 C1' C A 161 beta 501 507 504 526 C1' U A 162 beta 521 527 524 546 C1' G A 163 beta 541 547 544 569 C1' U A 164 beta 564 570 567 589 C1' A A 165 beta 584 590 587 611 C1' G A 166 beta 606 612 609 634 C1' G A 167 beta 629 635 632 657 C1' G A 168 beta 652 658 655 680 C1' G A 169 beta 675 681 678 703 C1' A A 170 beta 698 704 701 725 C1' G A 171 beta 720 726 723 748 C1' A A 172 beta 743 749 746 770 C1' U A 173 beta 765 771 768 790 C1' G A 174 beta 785 791 788 813 C1' U A 175 beta 808 814 811 833 C1' A A 176 beta 828 834 831 855 C1' A A 177 beta 850 856 853 877 C1' C A 178 beta 872 878 875 897 C1' C A 179 beta 892 898 895 917 C1' C A 180 beta 912 918 915 937 C1' C A 181 beta 932 938 935 957 C1' C A 182 beta 952 958 955 977 C1' U A 183 beta 972 978 975 997 C1' U A 184 beta 992 998 995 1017 C1' U A 185 beta 1012 1018 1015 1037 C1' A A 186 beta 1032 1038 1035 1059 C1' C A 187 beta 1054 1060 1057 1079 C1' C A 188 beta 1074 1080 1077 1099 C1' U A 189 beta 1094 1100 1097 1119 C1' G A 190 beta 1114 1120 1117 1142 C1' C A 191 beta 1137 1143 1140 1162 C1' C A 192 beta 1157 1163 1160 1182 C1' G A 193 beta 1177 1183 1180 1205 C1' A A 194 beta 1200 1206 1203 1227 C1' A A 195 beta 1222 1228 1225 1249 C1' C A 196 beta 1244 1250 1247 1269 C1' C A 197 beta 1264 1270 1267 1289 C1' C A 198 beta 1284 1290 1287 1309 C1' C A 199 beta 1304 1310 1307 1329 C1' G A 200 beta 1324 1330 1327 1352 C1' C A 201 beta 1347 1353 1350 1372 C1' C A 202 beta 1367 1373 1370 1392 C1' A A 203 beta 1387 1393 1390 1414 C1' G A 204 beta 1409 1415 1412 1437 C1' G A 205 beta 1432 1438 1435 1460 C1' C A 206 beta 1455 1461 1458 1480 C1' C A 207 beta 1475 1481 1478 1500 C1' C A 208 beta 1495 1501 1498 1520 C1' G A 209 beta 1515 1521 1518 1543 C1' G A 210 beta 1538 1544 1541 1566 C1' A A 211 beta 1561 1567 1564 1588 C1' A A 212 beta 1583 1589 1586 1610 C1' G A 213 beta 1605 1611 1608 1633 C1' G A 214 beta 1628 1634 1631 1656 C1' G A 215 beta 1651 1657 1654 1679 C1' A A 216 beta 1674 1680 1677 1701 C1' G A 217 beta 1696 1702 1699 1724 C1' C A 218 beta 1719 1725 1722 1744 C1' A A 219 beta 1739 1745 1742 1766 C1' A A 220 beta 1761 1767 1764 1788 C1' C A 221 beta 1783 1789 1786 1808 C1' G A 222 beta 1803 1809 1806 1831 C1' G A 223 beta 1826 1832 1829 1854 C1' U A 224 beta 1849 1855 1852 1874 C1' A A 225 beta 1869 1875 1872 1896 C1' G A 226 beta 1891 1897 1894 1919 C1' G A 227 beta 1914 1920 1917 1942 C1' C A 228 beta 1937 1943 1940 1962 C1' A A 229 beta 1957 1963 1960 1984 C1' G A 230 beta 1979 1985 1982 2007 C1' G A 231 beta 2002 2008 2005 2030 C1' A A 232 beta 2025 2031 2028 2052 C1' C A 233 beta 2047 2053 2050 2072 C1' G A 234 beta 2067 2073 2070 2095 C1' U A 235 beta 2090 2096 2093 2115 C1' C A 236 beta 2110 2116 2113 2135 C1' G A 237 beta 2130 2136 2133 2158 C1' G A 238 beta 2153 2159 2156 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 138 OK 9 5 8 30 C2' C A 139 OK 32 28 31 50 C2' U A 140 OK 52 48 51 70 C2' C A 141 OK 72 68 71 90 C2' G A 142 OK 92 88 91 113 C2' G A 143 OK 115 111 114 136 C2' C A 144 OK 138 134 137 156 C2' G A 145 OK 158 154 157 179 C2' G A 146 OK 181 177 180 202 C2' U A 147 OK 204 200 203 222 C2' G A 148 OK 224 220 223 245 C2' G A 149 OK 247 243 246 268 C2' G A 150 OK 270 266 269 291 C2' G A 151 OK 293 289 292 314 C2' G A 152 OK 316 312 315 337 C2' A A 153 OK 339 335 338 359 C2' G A 154 OK 361 357 360 382 C2' C A 155 OK 384 380 383 402 C2' A A 156 OK 404 400 403 424 C2' U A 157 OK 426 422 425 444 C2' C A 158 OK 446 442 445 464 C2' U A 159 OK 466 462 465 484 C2' C A 160 OK 486 482 485 504 C2' C A 161 OK 506 502 505 524 C2' U A 162 OK 526 522 525 544 C2' G A 163 OK 546 542 545 567 C2' U A 164 OK 569 565 568 587 C2' A A 165 OK 589 585 588 609 C2' G A 166 OK 611 607 610 632 C2' G A 167 OK 634 630 633 655 C2' G A 168 OK 657 653 656 678 C2' G A 169 OK 680 676 679 701 C2' A A 170 OK 703 699 702 723 C2' G A 171 OK 725 721 724 746 C2' A A 172 OK 748 744 747 768 C2' U A 173 OK 770 766 769 788 C2' G A 174 OK 790 786 789 811 C2' U A 175 OK 813 809 812 831 C2' A A 176 OK 833 829 832 853 C2' A A 177 OK 855 851 854 875 C2' C A 178 OK 877 873 876 895 C2' C A 179 OK 897 893 896 915 C2' C A 180 OK 917 913 916 935 C2' C A 181 OK 937 933 936 955 C2' C A 182 OK 957 953 956 975 C2' U A 183 OK 977 973 976 995 C2' U A 184 OK 997 993 996 1015 C2' U A 185 OK 1017 1013 1016 1035 C2' A A 186 OK 1037 1033 1036 1057 C2' C A 187 OK 1059 1055 1058 1077 C2' C A 188 OK 1079 1075 1078 1097 C2' U A 189 OK 1099 1095 1098 1117 C2' G A 190 OK 1119 1115 1118 1140 C2' C A 191 OK 1142 1138 1141 1160 C2' C A 192 OK 1162 1158 1161 1180 C2' G A 193 OK 1182 1178 1181 1203 C2' A A 194 OK 1205 1201 1204 1225 C2' A A 195 OK 1227 1223 1226 1247 C2' C A 196 OK 1249 1245 1248 1267 C2' C A 197 OK 1269 1265 1268 1287 C2' C A 198 OK 1289 1285 1288 1307 C2' C A 199 OK 1309 1305 1308 1327 C2' G A 200 OK 1329 1325 1328 1350 C2' C A 201 OK 1352 1348 1351 1370 C2' C A 202 OK 1372 1368 1371 1390 C2' A A 203 OK 1392 1388 1391 1412 C2' G A 204 OK 1414 1410 1413 1435 C2' G A 205 OK 1437 1433 1436 1458 C2' C A 206 OK 1460 1456 1459 1478 C2' C A 207 OK 1480 1476 1479 1498 C2' C A 208 OK 1500 1496 1499 1518 C2' G A 209 OK 1520 1516 1519 1541 C2' G A 210 OK 1543 1539 1542 1564 C2' A A 211 OK 1566 1562 1565 1586 C2' A A 212 OK 1588 1584 1587 1608 C2' G A 213 OK 1610 1606 1609 1631 C2' G A 214 OK 1633 1629 1632 1654 C2' G A 215 OK 1656 1652 1655 1677 C2' A A 216 OK 1679 1675 1678 1699 C2' G A 217 OK 1701 1697 1700 1722 C2' C A 218 OK 1724 1720 1723 1742 C2' A A 219 OK 1744 1740 1743 1764 C2' A A 220 OK 1766 1762 1765 1786 C2' C A 221 OK 1788 1784 1787 1806 C2' G A 222 OK 1808 1804 1807 1829 C2' G A 223 OK 1831 1827 1830 1852 C2' U A 224 OK 1854 1850 1853 1872 C2' A A 225 OK 1874 1870 1873 1894 C2' G A 226 OK 1896 1892 1895 1917 C2' G A 227 OK 1919 1915 1918 1940 C2' C A 228 OK 1942 1938 1941 1960 C2' A A 229 OK 1962 1958 1961 1982 C2' G A 230 OK 1984 1980 1983 2005 C2' G A 231 OK 2007 2003 2006 2028 C2' A A 232 OK 2030 2026 2029 2050 C2' C A 233 OK 2052 2048 2051 2070 C2' G A 234 OK 2072 2068 2071 2093 C2' U A 235 OK 2095 2091 2094 2113 C2' C A 236 OK 2115 2111 2114 2133 C2' G A 237 OK 2135 2131 2134 2156 C2' G A 238 OK 2158 2154 2157 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 138 OK 3 6 7 28 C3' C A 139 OK 26 29 30 48 C3' U A 140 OK 46 49 50 68 C3' C A 141 OK 66 69 70 88 C3' G A 142 OK 86 89 90 111 C3' G A 143 OK 109 112 113 134 C3' C A 144 OK 132 135 136 154 C3' G A 145 OK 152 155 156 177 C3' G A 146 OK 175 178 179 200 C3' U A 147 OK 198 201 202 220 C3' G A 148 OK 218 221 222 243 C3' G A 149 OK 241 244 245 266 C3' G A 150 OK 264 267 268 289 C3' G A 151 OK 287 290 291 312 C3' G A 152 OK 310 313 314 335 C3' A A 153 OK 333 336 337 357 C3' G A 154 OK 355 358 359 380 C3' C A 155 OK 378 381 382 400 C3' A A 156 OK 398 401 402 422 C3' U A 157 OK 420 423 424 442 C3' C A 158 OK 440 443 444 462 C3' U A 159 OK 460 463 464 482 C3' C A 160 OK 480 483 484 502 C3' C A 161 OK 500 503 504 522 C3' U A 162 OK 520 523 524 542 C3' G A 163 OK 540 543 544 565 C3' U A 164 OK 563 566 567 585 C3' A A 165 OK 583 586 587 607 C3' G A 166 OK 605 608 609 630 C3' G A 167 OK 628 631 632 653 C3' G A 168 OK 651 654 655 676 C3' G A 169 OK 674 677 678 699 C3' A A 170 OK 697 700 701 721 C3' G A 171 OK 719 722 723 744 C3' A A 172 OK 742 745 746 766 C3' U A 173 OK 764 767 768 786 C3' G A 174 OK 784 787 788 809 C3' U A 175 OK 807 810 811 829 C3' A A 176 OK 827 830 831 851 C3' A A 177 OK 849 852 853 873 C3' C A 178 OK 871 874 875 893 C3' C A 179 OK 891 894 895 913 C3' C A 180 OK 911 914 915 933 C3' C A 181 OK 931 934 935 953 C3' C A 182 OK 951 954 955 973 C3' U A 183 OK 971 974 975 993 C3' U A 184 OK 991 994 995 1013 C3' U A 185 OK 1011 1014 1015 1033 C3' A A 186 OK 1031 1034 1035 1055 C3' C A 187 OK 1053 1056 1057 1075 C3' C A 188 OK 1073 1076 1077 1095 C3' U A 189 OK 1093 1096 1097 1115 C3' G A 190 OK 1113 1116 1117 1138 C3' C A 191 OK 1136 1139 1140 1158 C3' C A 192 OK 1156 1159 1160 1178 C3' G A 193 OK 1176 1179 1180 1201 C3' A A 194 OK 1199 1202 1203 1223 C3' A A 195 OK 1221 1224 1225 1245 C3' C A 196 OK 1243 1246 1247 1265 C3' C A 197 OK 1263 1266 1267 1285 C3' C A 198 OK 1283 1286 1287 1305 C3' C A 199 OK 1303 1306 1307 1325 C3' G A 200 OK 1323 1326 1327 1348 C3' C A 201 OK 1346 1349 1350 1368 C3' C A 202 OK 1366 1369 1370 1388 C3' A A 203 OK 1386 1389 1390 1410 C3' G A 204 OK 1408 1411 1412 1433 C3' G A 205 OK 1431 1434 1435 1456 C3' C A 206 OK 1454 1457 1458 1476 C3' C A 207 OK 1474 1477 1478 1496 C3' C A 208 OK 1494 1497 1498 1516 C3' G A 209 OK 1514 1517 1518 1539 C3' G A 210 OK 1537 1540 1541 1562 C3' A A 211 OK 1560 1563 1564 1584 C3' A A 212 OK 1582 1585 1586 1606 C3' G A 213 OK 1604 1607 1608 1629 C3' G A 214 OK 1627 1630 1631 1652 C3' G A 215 OK 1650 1653 1654 1675 C3' A A 216 OK 1673 1676 1677 1697 C3' G A 217 OK 1695 1698 1699 1720 C3' C A 218 OK 1718 1721 1722 1740 C3' A A 219 OK 1738 1741 1742 1762 C3' A A 220 OK 1760 1763 1764 1784 C3' C A 221 OK 1782 1785 1786 1804 C3' G A 222 OK 1802 1805 1806 1827 C3' G A 223 OK 1825 1828 1829 1850 C3' U A 224 OK 1848 1851 1852 1870 C3' A A 225 OK 1868 1871 1872 1892 C3' G A 226 OK 1890 1893 1894 1915 C3' G A 227 OK 1913 1916 1917 1938 C3' C A 228 OK 1936 1939 1940 1958 C3' A A 229 OK 1956 1959 1960 1980 C3' G A 230 OK 1978 1981 1982 2003 C3' G A 231 OK 2001 2004 2005 2026 C3' A A 232 OK 2024 2027 2028 2048 C3' C A 233 OK 2046 2049 2050 2068 C3' G A 234 OK 2066 2069 2070 2091 C3' U A 235 OK 2089 2092 2093 2111 C3' C A 236 OK 2109 2112 2113 2131 C3' G A 237 OK 2129 2132 2133 2154 C3' G A 238 OK 2152 2155 2156 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 138 OK 5 2 4 26 C4' C A 139 OK 28 25 27 46 C4' U A 140 OK 48 45 47 66 C4' C A 141 OK 68 65 67 86 C4' G A 142 OK 88 85 87 109 C4' G A 143 OK 111 108 110 132 C4' C A 144 OK 134 131 133 152 C4' G A 145 OK 154 151 153 175 C4' G A 146 OK 177 174 176 198 C4' U A 147 OK 200 197 199 218 C4' G A 148 OK 220 217 219 241 C4' G A 149 OK 243 240 242 264 C4' G A 150 OK 266 263 265 287 C4' G A 151 OK 289 286 288 310 C4' G A 152 OK 312 309 311 333 C4' A A 153 OK 335 332 334 355 C4' G A 154 OK 357 354 356 378 C4' C A 155 OK 380 377 379 398 C4' A A 156 OK 400 397 399 420 C4' U A 157 OK 422 419 421 440 C4' C A 158 OK 442 439 441 460 C4' U A 159 OK 462 459 461 480 C4' C A 160 OK 482 479 481 500 C4' C A 161 OK 502 499 501 520 C4' U A 162 OK 522 519 521 540 C4' G A 163 OK 542 539 541 563 C4' U A 164 OK 565 562 564 583 C4' A A 165 OK 585 582 584 605 C4' G A 166 OK 607 604 606 628 C4' G A 167 OK 630 627 629 651 C4' G A 168 OK 653 650 652 674 C4' G A 169 OK 676 673 675 697 C4' A A 170 OK 699 696 698 719 C4' G A 171 OK 721 718 720 742 C4' A A 172 OK 744 741 743 764 C4' U A 173 OK 766 763 765 784 C4' G A 174 OK 786 783 785 807 C4' U A 175 OK 809 806 808 827 C4' A A 176 OK 829 826 828 849 C4' A A 177 OK 851 848 850 871 C4' C A 178 OK 873 870 872 891 C4' C A 179 OK 893 890 892 911 C4' C A 180 OK 913 910 912 931 C4' C A 181 OK 933 930 932 951 C4' C A 182 OK 953 950 952 971 C4' U A 183 OK 973 970 972 991 C4' U A 184 OK 993 990 992 1011 C4' U A 185 OK 1013 1010 1012 1031 C4' A A 186 OK 1033 1030 1032 1053 C4' C A 187 OK 1055 1052 1054 1073 C4' C A 188 OK 1075 1072 1074 1093 C4' U A 189 OK 1095 1092 1094 1113 C4' G A 190 OK 1115 1112 1114 1136 C4' C A 191 OK 1138 1135 1137 1156 C4' C A 192 OK 1158 1155 1157 1176 C4' G A 193 OK 1178 1175 1177 1199 C4' A A 194 OK 1201 1198 1200 1221 C4' A A 195 OK 1223 1220 1222 1243 C4' C A 196 OK 1245 1242 1244 1263 C4' C A 197 OK 1265 1262 1264 1283 C4' C A 198 OK 1285 1282 1284 1303 C4' C A 199 OK 1305 1302 1304 1323 C4' G A 200 OK 1325 1322 1324 1346 C4' C A 201 OK 1348 1345 1347 1366 C4' C A 202 OK 1368 1365 1367 1386 C4' A A 203 OK 1388 1385 1387 1408 C4' G A 204 OK 1410 1407 1409 1431 C4' G A 205 OK 1433 1430 1432 1454 C4' C A 206 OK 1456 1453 1455 1474 C4' C A 207 OK 1476 1473 1475 1494 C4' C A 208 OK 1496 1493 1495 1514 C4' G A 209 OK 1516 1513 1515 1537 C4' G A 210 OK 1539 1536 1538 1560 C4' A A 211 OK 1562 1559 1561 1582 C4' A A 212 OK 1584 1581 1583 1604 C4' G A 213 OK 1606 1603 1605 1627 C4' G A 214 OK 1629 1626 1628 1650 C4' G A 215 OK 1652 1649 1651 1673 C4' A A 216 OK 1675 1672 1674 1695 C4' G A 217 OK 1697 1694 1696 1718 C4' C A 218 OK 1720 1717 1719 1738 C4' A A 219 OK 1740 1737 1739 1760 C4' A A 220 OK 1762 1759 1761 1782 C4' C A 221 OK 1784 1781 1783 1802 C4' G A 222 OK 1804 1801 1803 1825 C4' G A 223 OK 1827 1824 1826 1848 C4' U A 224 OK 1850 1847 1849 1868 C4' A A 225 OK 1870 1867 1869 1890 C4' G A 226 OK 1892 1889 1891 1913 C4' G A 227 OK 1915 1912 1914 1936 C4' C A 228 OK 1938 1935 1937 1956 C4' A A 229 OK 1958 1955 1957 1978 C4' G A 230 OK 1980 1977 1979 2001 C4' G A 231 OK 2003 2000 2002 2024 C4' A A 232 OK 2026 2023 2025 2046 C4' C A 233 OK 2048 2045 2047 2066 C4' G A 234 OK 2068 2065 2067 2089 C4' U A 235 OK 2091 2088 2090 2109 C4' C A 236 OK 2111 2108 2110 2129 C4' G A 237 OK 2131 2128 2130 2152 C4' G A 238 OK 2154 2151 2153 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 138 1 3 25 C5' C A 139 24 26 45 C5' U A 140 44 46 65 C5' C A 141 64 66 85 C5' G A 142 84 86 108 C5' G A 143 107 109 131 C5' C A 144 130 132 151 C5' G A 145 150 152 174 C5' G A 146 173 175 197 C5' U A 147 196 198 217 C5' G A 148 216 218 240 C5' G A 149 239 241 263 C5' G A 150 262 264 286 C5' G A 151 285 287 309 C5' G A 152 308 310 332 C5' A A 153 331 333 354 C5' G A 154 353 355 377 C5' C A 155 376 378 397 C5' A A 156 396 398 419 C5' U A 157 418 420 439 C5' C A 158 438 440 459 C5' U A 159 458 460 479 C5' C A 160 478 480 499 C5' C A 161 498 500 519 C5' U A 162 518 520 539 C5' G A 163 538 540 562 C5' U A 164 561 563 582 C5' A A 165 581 583 604 C5' G A 166 603 605 627 C5' G A 167 626 628 650 C5' G A 168 649 651 673 C5' G A 169 672 674 696 C5' A A 170 695 697 718 C5' G A 171 717 719 741 C5' A A 172 740 742 763 C5' U A 173 762 764 783 C5' G A 174 782 784 806 C5' U A 175 805 807 826 C5' A A 176 825 827 848 C5' A A 177 847 849 870 C5' C A 178 869 871 890 C5' C A 179 889 891 910 C5' C A 180 909 911 930 C5' C A 181 929 931 950 C5' C A 182 949 951 970 C5' U A 183 969 971 990 C5' U A 184 989 991 1010 C5' U A 185 1009 1011 1030 C5' A A 186 1029 1031 1052 C5' C A 187 1051 1053 1072 C5' C A 188 1071 1073 1092 C5' U A 189 1091 1093 1112 C5' G A 190 1111 1113 1135 C5' C A 191 1134 1136 1155 C5' C A 192 1154 1156 1175 C5' G A 193 1174 1176 1198 C5' A A 194 1197 1199 1220 C5' A A 195 1219 1221 1242 C5' C A 196 1241 1243 1262 C5' C A 197 1261 1263 1282 C5' C A 198 1281 1283 1302 C5' C A 199 1301 1303 1322 C5' G A 200 1321 1323 1345 C5' C A 201 1344 1346 1365 C5' C A 202 1364 1366 1385 C5' A A 203 1384 1386 1407 C5' G A 204 1406 1408 1430 C5' G A 205 1429 1431 1453 C5' C A 206 1452 1454 1473 C5' C A 207 1472 1474 1493 C5' C A 208 1492 1494 1513 C5' G A 209 1512 1514 1536 C5' G A 210 1535 1537 1559 C5' A A 211 1558 1560 1581 C5' A A 212 1580 1582 1603 C5' G A 213 1602 1604 1626 C5' G A 214 1625 1627 1649 C5' G A 215 1648 1650 1672 C5' A A 216 1671 1673 1694 C5' G A 217 1693 1695 1717 C5' C A 218 1716 1718 1737 C5' A A 219 1736 1738 1759 C5' A A 220 1758 1760 1781 C5' C A 221 1780 1782 1801 C5' G A 222 1800 1802 1824 C5' G A 223 1823 1825 1847 C5' U A 224 1846 1848 1867 C5' A A 225 1866 1868 1889 C5' G A 226 1888 1890 1912 C5' G A 227 1911 1913 1935 C5' C A 228 1934 1936 1955 C5' A A 229 1954 1956 1977 C5' G A 230 1976 1978 2000 C5' G A 231 1999 2001 2023 C5' A A 232 2022 2024 2045 C5' C A 233 2044 2046 2065 C5' G A 234 2064 2066 2088 C5' U A 235 2087 2089 2108 C5' C A 236 2107 2109 2128 C5' G A 237 2127 2129 2151 C5' G A 238 2150 2152 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P C A 139 distorted distorted 6 22 23 24 41 P U A 140 distorted distorted 29 42 43 44 61 P C A 141 distorted distorted 49 62 63 64 81 P G A 142 distorted distorted 69 82 83 84 104 P G A 143 distorted distorted 89 105 106 107 127 P C A 144 distorted distorted 112 128 129 130 147 P G A 145 distorted distorted 135 148 149 150 170 P G A 146 distorted distorted 155 171 172 173 193 P U A 147 distorted distorted 178 194 195 196 213 P G A 148 distorted distorted 201 214 215 216 236 P G A 149 distorted distorted 221 237 238 239 259 P G A 150 distorted distorted 244 260 261 262 282 P G A 151 distorted distorted 267 283 284 285 305 P G A 152 distorted distorted 290 306 307 308 328 P A A 153 distorted distorted 313 329 330 331 350 P G A 154 distorted distorted 336 351 352 353 373 P C A 155 distorted distorted 358 374 375 376 393 P A A 156 distorted distorted 381 394 395 396 415 P U A 157 distorted distorted 401 416 417 418 435 P C A 158 distorted distorted 423 436 437 438 455 P U A 159 distorted distorted 443 456 457 458 475 P C A 160 distorted distorted 463 476 477 478 495 P C A 161 distorted distorted 483 496 497 498 515 P U A 162 distorted distorted 503 516 517 518 535 P G A 163 distorted distorted 523 536 537 538 558 P U A 164 distorted distorted 543 559 560 561 578 P A A 165 distorted distorted 566 579 580 581 600 P G A 166 distorted distorted 586 601 602 603 623 P G A 167 distorted distorted 608 624 625 626 646 P G A 168 distorted distorted 631 647 648 649 669 P G A 169 distorted distorted 654 670 671 672 692 P A A 170 distorted distorted 677 693 694 695 714 P G A 171 distorted distorted 700 715 716 717 737 P A A 172 distorted distorted 722 738 739 740 759 P U A 173 distorted distorted 745 760 761 762 779 P G A 174 distorted distorted 767 780 781 782 802 P U A 175 distorted distorted 787 803 804 805 822 P A A 176 distorted distorted 810 823 824 825 844 P A A 177 distorted distorted 830 845 846 847 866 P C A 178 distorted distorted 852 867 868 869 886 P C A 179 distorted distorted 874 887 888 889 906 P C A 180 distorted distorted 894 907 908 909 926 P C A 181 distorted distorted 914 927 928 929 946 P C A 182 distorted distorted 934 947 948 949 966 P U A 183 distorted distorted 954 967 968 969 986 P U A 184 distorted distorted 974 987 988 989 1006 P U A 185 distorted distorted 994 1007 1008 1009 1026 P A A 186 distorted distorted 1014 1027 1028 1029 1048 P C A 187 distorted distorted 1034 1049 1050 1051 1068 P C A 188 distorted distorted 1056 1069 1070 1071 1088 P U A 189 distorted distorted 1076 1089 1090 1091 1108 P G A 190 distorted distorted 1096 1109 1110 1111 1131 P C A 191 distorted distorted 1116 1132 1133 1134 1151 P C A 192 distorted distorted 1139 1152 1153 1154 1171 P G A 193 distorted distorted 1159 1172 1173 1174 1194 P A A 194 distorted distorted 1179 1195 1196 1197 1216 P A A 195 distorted distorted 1202 1217 1218 1219 1238 P C A 196 distorted distorted 1224 1239 1240 1241 1258 P C A 197 distorted distorted 1246 1259 1260 1261 1278 P C A 198 distorted distorted 1266 1279 1280 1281 1298 P C A 199 distorted distorted 1286 1299 1300 1301 1318 P G A 200 distorted distorted 1306 1319 1320 1321 1341 P C A 201 distorted distorted 1326 1342 1343 1344 1361 P C A 202 distorted distorted 1349 1362 1363 1364 1381 P A A 203 distorted distorted 1369 1382 1383 1384 1403 P G A 204 distorted distorted 1389 1404 1405 1406 1426 P G A 205 distorted distorted 1411 1427 1428 1429 1449 P C A 206 distorted distorted 1434 1450 1451 1452 1469 P C A 207 distorted distorted 1457 1470 1471 1472 1489 P C A 208 distorted distorted 1477 1490 1491 1492 1509 P G A 209 distorted distorted 1497 1510 1511 1512 1532 P G A 210 distorted distorted 1517 1533 1534 1535 1555 P A A 211 distorted distorted 1540 1556 1557 1558 1577 P A A 212 distorted distorted 1563 1578 1579 1580 1599 P G A 213 distorted distorted 1585 1600 1601 1602 1622 P G A 214 distorted distorted 1607 1623 1624 1625 1645 P G A 215 distorted distorted 1630 1646 1647 1648 1668 P A A 216 distorted distorted 1653 1669 1670 1671 1690 P G A 217 distorted distorted 1676 1691 1692 1693 1713 P C A 218 distorted distorted 1698 1714 1715 1716 1733 P A A 219 distorted distorted 1721 1734 1735 1736 1755 P A A 220 distorted distorted 1741 1756 1757 1758 1777 P C A 221 distorted distorted 1763 1778 1779 1780 1797 P G A 222 distorted distorted 1785 1798 1799 1800 1820 P G A 223 distorted distorted 1805 1821 1822 1823 1843 P U A 224 distorted distorted 1828 1844 1845 1846 1863 P A A 225 distorted distorted 1851 1864 1865 1866 1885 P G A 226 distorted distorted 1871 1886 1887 1888 1908 P G A 227 distorted distorted 1893 1909 1910 1911 1931 P C A 228 distorted distorted 1916 1932 1933 1934 1951 P A A 229 distorted distorted 1939 1952 1953 1954 1973 P G A 230 distorted distorted 1959 1974 1975 1976 1996 P G A 231 distorted distorted 1981 1997 1998 1999 2019 P A A 232 distorted distorted 2004 2020 2021 2022 2041 P C A 233 distorted distorted 2027 2042 2043 2044 2061 P G A 234 distorted distorted 2049 2062 2063 2064 2084 P U A 235 distorted distorted 2069 2085 2086 2087 2104 P C A 236 distorted distorted 2092 2105 2106 2107 2124 P G A 237 distorted distorted 2112 2125 2126 2127 2147 P G A 238 distorted distorted 2132 2148 2149 2150 ---------------------------------------------------------------------------------