ID code: '1U6P' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 901 C1' G B 276 alpha beta 896 919 902 899 935 C1' G B 277 alpha beta 930 953 936 933 969 C1' C B 278 alpha beta 964 984 970 967 1000 C1' G B 279 alpha beta 995 1018 1001 998 1034 C1' G B 280 alpha beta 1029 1052 1035 1032 1068 C1' U B 281 alpha beta 1063 1083 1069 1066 1087 C1' AP7 B 282 alpha beta 1103 1109 1097 1098 1132 C1' C B 283 alpha beta 1127 1147 1133 1130 1163 C1' U B 284 alpha beta 1158 1178 1164 1161 1193 C1' A B 285 alpha beta 1188 1210 1194 1191 1226 C1' G B 286 alpha beta 1221 1244 1227 1224 1260 C1' U B 287 alpha beta 1255 1275 1261 1258 1290 C1' U B 288 alpha beta 1285 1305 1291 1288 1320 C1' G B 289 alpha beta 1315 1338 1321 1318 1354 C1' A B 290 alpha beta 1349 1371 1355 1352 1387 C1' G B 291 alpha beta 1382 1405 1388 1385 1421 C1' A B 292 alpha beta 1416 1438 1422 1419 1454 C1' A B 293 alpha beta 1449 1471 1455 1452 1487 C1' A B 294 alpha beta 1482 1504 1488 1485 1520 C1' C B 295 alpha beta 1515 1535 1521 1518 1551 C1' U B 296 alpha beta 1546 1566 1552 1549 1581 C1' A B 297 alpha beta 1576 1598 1582 1579 1614 C1' G B 298 alpha beta 1609 1632 1615 1612 1648 C1' C B 299 alpha beta 1643 1663 1649 1646 1679 C1' U B 300 alpha beta 1674 1694 1680 1677 1709 C1' C B 301 alpha beta 1704 1724 1710 1707 1740 C1' U B 302 alpha beta 1735 1755 1741 1738 1770 C1' G B 303 alpha beta 1765 1788 1771 1768 1804 C1' U B 304 alpha beta 1799 1819 1805 1802 1834 C1' A B 305 alpha beta 1829 1851 1835 1832 1867 C1' U B 306 alpha beta 1862 1882 1868 1865 1897 C1' C B 307 alpha beta 1892 1912 1898 1895 1928 C1' U B 308 alpha beta 1923 1943 1929 1926 1958 C1' G B 309 alpha beta 1953 1976 1959 1956 1992 C1' G B 310 alpha beta 1987 2010 1993 1990 2026 C1' C B 311 alpha beta 2021 2041 2027 2024 2057 C1' G B 312 alpha beta 2052 2075 2058 2055 2091 C1' G B 313 alpha beta 2086 2109 2092 2089 2125 C1' A B 314 alpha beta 2120 2142 2126 2123 2158 C1' C B 315 alpha beta 2153 2173 2159 2156 2189 C1' C B 316 alpha beta 2184 2204 2190 2187 2220 C1' C B 317 alpha beta 2215 2235 2221 2218 2251 C1' G B 318 alpha beta 2246 2269 2252 2249 2285 C1' U B 319 alpha beta 2280 2300 2286 2283 2315 C1' G B 320 alpha beta 2310 2333 2316 2313 2349 C1' G B 321 alpha beta 2344 2367 2350 2347 2383 C1' U B 322 alpha beta 2378 2398 2384 2381 2413 C1' G B 323 alpha beta 2408 2431 2414 2411 2447 C1' G B 324 alpha beta 2442 2465 2448 2445 2481 C1' A B 325 alpha beta 2476 2498 2482 2479 2514 C1' A B 326 alpha beta 2509 2531 2515 2512 2547 C1' C B 327 alpha beta 2542 2562 2548 2545 2578 C1' U B 328 alpha beta 2573 2593 2579 2576 2608 C1' G B 329 alpha beta 2603 2626 2609 2606 2642 C1' U B 330 alpha beta 2637 2657 2643 2640 2672 C1' G B 331 alpha beta 2667 2690 2673 2670 2706 C1' A B 332 alpha beta 2701 2723 2707 2704 2739 C1' A B 333 alpha beta 2734 2756 2740 2737 2772 C1' G B 334 alpha beta 2767 2790 2773 2770 2806 C1' U B 335 alpha beta 2801 2821 2807 2804 2836 C1' U B 336 alpha beta 2831 2851 2837 2834 2866 C1' C B 337 alpha beta 2861 2881 2867 2864 2897 C1' G B 338 alpha beta 2892 2915 2898 2895 2931 C1' G B 339 alpha beta 2926 2949 2932 2929 2965 C1' A B 340 alpha beta 2960 2982 2966 2963 2998 C1' A B 341 alpha beta 2993 3015 2999 2996 3031 C1' C B 342 alpha beta 3026 3046 3032 3029 3062 C1' A B 343 alpha beta 3057 3079 3063 3060 3095 C1' C B 344 alpha beta 3090 3110 3096 3093 3126 C1' C B 345 alpha beta 3121 3141 3127 3124 3157 C1' C B 346 alpha beta 3152 3172 3158 3155 3188 C1' G B 347 alpha beta 3183 3206 3189 3186 3222 C1' G B 348 alpha beta 3217 3240 3223 3220 3256 C1' C B 349 alpha beta 3251 3271 3257 3254 3287 C1' C B 350 alpha beta 3282 3302 3288 3285 3318 C1' G B 351 alpha beta 3313 3336 3319 3316 3352 C1' C B 352 alpha beta 3347 3367 3353 3350 3383 C1' A B 353 alpha beta 3378 3400 3384 3381 3416 C1' A B 354 alpha beta 3411 3433 3417 3414 3449 C1' C B 355 alpha beta 3444 3464 3450 3447 3480 C1' C B 356 alpha beta 3475 3495 3481 3478 3511 C1' C B 357 alpha beta 3506 3526 3512 3509 3542 C1' U B 358 alpha beta 3537 3557 3543 3540 3572 C1' G B 359 alpha beta 3567 3590 3573 3570 3606 C1' G B 360 alpha beta 3601 3624 3607 3604 3640 C1' G B 361 alpha beta 3635 3658 3641 3638 3674 C1' A B 362 alpha beta 3669 3691 3675 3672 3707 C1' G B 363 alpha beta 3702 3725 3708 3705 3741 C1' A B 364 alpha beta 3736 3758 3742 3739 3774 C1' G B 365 alpha beta 3769 3792 3775 3772 3808 C1' G B 366 alpha beta 3803 3826 3809 3806 3842 C1' U B 367 alpha beta 3837 3857 3843 3840 3872 C1' C B 368 alpha beta 3867 3887 3873 3870 3903 C1' C B 369 alpha beta 3898 3918 3904 3901 3934 C1' C B 370 alpha beta 3929 3949 3935 3932 3965 C1' A B 371 alpha beta 3960 3982 3966 3963 3998 C1' G B 372 alpha beta 3993 4016 3999 3996 4032 C1' G B 373 alpha beta 4027 4050 4033 4030 4066 C1' G B 374 alpha beta 4061 4084 4067 4064 4100 C1' U B 375 alpha beta 4095 4115 4101 4098 4130 C1' U B 376 alpha beta 4125 4145 4131 4128 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 899 C2' G B 276 OK OK 901 897 917 900 933 C2' G B 277 OK OK 935 931 951 934 967 C2' C B 278 OK OK 969 965 982 968 998 C2' G B 279 OK OK 1000 996 1016 999 1032 C2' G B 280 OK OK 1034 1030 1050 1033 1066 C2' U B 281 OK OK 1068 1064 1081 1067 1098 C2' AP7 B 282 OK OK 1087 1100 1115 1099 1130 C2' C B 283 OK OK 1132 1128 1145 1131 1161 C2' U B 284 OK OK 1163 1159 1176 1162 1191 C2' A B 285 OK OK 1193 1189 1208 1192 1224 C2' G B 286 OK OK 1226 1222 1242 1225 1258 C2' U B 287 OK OK 1260 1256 1273 1259 1288 C2' U B 288 OK OK 1290 1286 1303 1289 1318 C2' G B 289 OK OK 1320 1316 1336 1319 1352 C2' A B 290 OK OK 1354 1350 1369 1353 1385 C2' G B 291 OK OK 1387 1383 1403 1386 1419 C2' A B 292 OK OK 1421 1417 1436 1420 1452 C2' A B 293 OK OK 1454 1450 1469 1453 1485 C2' A B 294 OK OK 1487 1483 1502 1486 1518 C2' C B 295 OK OK 1520 1516 1533 1519 1549 C2' U B 296 OK OK 1551 1547 1564 1550 1579 C2' A B 297 OK OK 1581 1577 1596 1580 1612 C2' G B 298 OK OK 1614 1610 1630 1613 1646 C2' C B 299 OK OK 1648 1644 1661 1647 1677 C2' U B 300 OK OK 1679 1675 1692 1678 1707 C2' C B 301 OK OK 1709 1705 1722 1708 1738 C2' U B 302 OK OK 1740 1736 1753 1739 1768 C2' G B 303 OK OK 1770 1766 1786 1769 1802 C2' U B 304 OK OK 1804 1800 1817 1803 1832 C2' A B 305 OK OK 1834 1830 1849 1833 1865 C2' U B 306 OK OK 1867 1863 1880 1866 1895 C2' C B 307 OK OK 1897 1893 1910 1896 1926 C2' U B 308 OK OK 1928 1924 1941 1927 1956 C2' G B 309 OK OK 1958 1954 1974 1957 1990 C2' G B 310 OK OK 1992 1988 2008 1991 2024 C2' C B 311 OK OK 2026 2022 2039 2025 2055 C2' G B 312 OK OK 2057 2053 2073 2056 2089 C2' G B 313 OK OK 2091 2087 2107 2090 2123 C2' A B 314 OK OK 2125 2121 2140 2124 2156 C2' C B 315 OK OK 2158 2154 2171 2157 2187 C2' C B 316 OK OK 2189 2185 2202 2188 2218 C2' C B 317 OK OK 2220 2216 2233 2219 2249 C2' G B 318 OK OK 2251 2247 2267 2250 2283 C2' U B 319 OK OK 2285 2281 2298 2284 2313 C2' G B 320 OK OK 2315 2311 2331 2314 2347 C2' G B 321 OK OK 2349 2345 2365 2348 2381 C2' U B 322 OK OK 2383 2379 2396 2382 2411 C2' G B 323 OK OK 2413 2409 2429 2412 2445 C2' G B 324 OK OK 2447 2443 2463 2446 2479 C2' A B 325 OK OK 2481 2477 2496 2480 2512 C2' A B 326 OK OK 2514 2510 2529 2513 2545 C2' C B 327 OK OK 2547 2543 2560 2546 2576 C2' U B 328 OK OK 2578 2574 2591 2577 2606 C2' G B 329 OK OK 2608 2604 2624 2607 2640 C2' U B 330 OK OK 2642 2638 2655 2641 2670 C2' G B 331 OK OK 2672 2668 2688 2671 2704 C2' A B 332 OK OK 2706 2702 2721 2705 2737 C2' A B 333 OK OK 2739 2735 2754 2738 2770 C2' G B 334 OK OK 2772 2768 2788 2771 2804 C2' U B 335 OK OK 2806 2802 2819 2805 2834 C2' U B 336 OK OK 2836 2832 2849 2835 2864 C2' C B 337 OK OK 2866 2862 2879 2865 2895 C2' G B 338 OK OK 2897 2893 2913 2896 2929 C2' G B 339 OK OK 2931 2927 2947 2930 2963 C2' A B 340 OK OK 2965 2961 2980 2964 2996 C2' A B 341 OK OK 2998 2994 3013 2997 3029 C2' C B 342 OK OK 3031 3027 3044 3030 3060 C2' A B 343 OK OK 3062 3058 3077 3061 3093 C2' C B 344 OK OK 3095 3091 3108 3094 3124 C2' C B 345 OK OK 3126 3122 3139 3125 3155 C2' C B 346 OK OK 3157 3153 3170 3156 3186 C2' G B 347 OK OK 3188 3184 3204 3187 3220 C2' G B 348 OK OK 3222 3218 3238 3221 3254 C2' C B 349 OK OK 3256 3252 3269 3255 3285 C2' C B 350 OK OK 3287 3283 3300 3286 3316 C2' G B 351 OK OK 3318 3314 3334 3317 3350 C2' C B 352 OK OK 3352 3348 3365 3351 3381 C2' A B 353 OK OK 3383 3379 3398 3382 3414 C2' A B 354 OK OK 3416 3412 3431 3415 3447 C2' C B 355 OK OK 3449 3445 3462 3448 3478 C2' C B 356 OK OK 3480 3476 3493 3479 3509 C2' C B 357 OK OK 3511 3507 3524 3510 3540 C2' U B 358 OK OK 3542 3538 3555 3541 3570 C2' G B 359 OK OK 3572 3568 3588 3571 3604 C2' G B 360 OK OK 3606 3602 3622 3605 3638 C2' G B 361 OK OK 3640 3636 3656 3639 3672 C2' A B 362 OK OK 3674 3670 3689 3673 3705 C2' G B 363 OK OK 3707 3703 3723 3706 3739 C2' A B 364 OK OK 3741 3737 3756 3740 3772 C2' G B 365 OK OK 3774 3770 3790 3773 3806 C2' G B 366 OK OK 3808 3804 3824 3807 3840 C2' U B 367 OK OK 3842 3838 3855 3841 3870 C2' C B 368 OK OK 3872 3868 3885 3871 3901 C2' C B 369 OK OK 3903 3899 3916 3902 3932 C2' C B 370 OK OK 3934 3930 3947 3933 3963 C2' A B 371 OK OK 3965 3961 3980 3964 3996 C2' G B 372 OK OK 3998 3994 4014 3997 4030 C2' G B 373 OK OK 4032 4028 4048 4031 4064 C2' G B 374 OK OK 4066 4062 4082 4065 4098 C2' U B 375 OK OK 4100 4096 4113 4099 4128 C2' U B 376 OK OK 4130 4126 4143 4129 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 897 C3' G B 276 OK OK 895 916 898 899 931 C3' G B 277 OK OK 929 950 932 933 965 C3' C B 278 OK OK 963 981 966 967 996 C3' G B 279 OK OK 994 1015 997 998 1030 C3' G B 280 OK OK 1028 1049 1031 1032 1064 C3' U B 281 OK OK 1062 1080 1065 1066 1100 C3' AP7 B 282 OK OK 1102 1117 1101 1098 1128 C3' C B 283 OK OK 1126 1144 1129 1130 1159 C3' U B 284 OK OK 1157 1175 1160 1161 1189 C3' A B 285 OK OK 1187 1207 1190 1191 1222 C3' G B 286 OK OK 1220 1241 1223 1224 1256 C3' U B 287 OK OK 1254 1272 1257 1258 1286 C3' U B 288 OK OK 1284 1302 1287 1288 1316 C3' G B 289 OK OK 1314 1335 1317 1318 1350 C3' A B 290 OK OK 1348 1368 1351 1352 1383 C3' G B 291 OK OK 1381 1402 1384 1385 1417 C3' A B 292 OK OK 1415 1435 1418 1419 1450 C3' A B 293 OK OK 1448 1468 1451 1452 1483 C3' A B 294 OK OK 1481 1501 1484 1485 1516 C3' C B 295 OK OK 1514 1532 1517 1518 1547 C3' U B 296 OK OK 1545 1563 1548 1549 1577 C3' A B 297 OK OK 1575 1595 1578 1579 1610 C3' G B 298 OK OK 1608 1629 1611 1612 1644 C3' C B 299 OK OK 1642 1660 1645 1646 1675 C3' U B 300 OK OK 1673 1691 1676 1677 1705 C3' C B 301 OK OK 1703 1721 1706 1707 1736 C3' U B 302 OK OK 1734 1752 1737 1738 1766 C3' G B 303 OK OK 1764 1785 1767 1768 1800 C3' U B 304 OK OK 1798 1816 1801 1802 1830 C3' A B 305 OK OK 1828 1848 1831 1832 1863 C3' U B 306 OK OK 1861 1879 1864 1865 1893 C3' C B 307 OK OK 1891 1909 1894 1895 1924 C3' U B 308 OK OK 1922 1940 1925 1926 1954 C3' G B 309 OK OK 1952 1973 1955 1956 1988 C3' G B 310 OK OK 1986 2007 1989 1990 2022 C3' C B 311 OK OK 2020 2038 2023 2024 2053 C3' G B 312 OK OK 2051 2072 2054 2055 2087 C3' G B 313 OK OK 2085 2106 2088 2089 2121 C3' A B 314 OK OK 2119 2139 2122 2123 2154 C3' C B 315 OK OK 2152 2170 2155 2156 2185 C3' C B 316 OK OK 2183 2201 2186 2187 2216 C3' C B 317 OK OK 2214 2232 2217 2218 2247 C3' G B 318 OK OK 2245 2266 2248 2249 2281 C3' U B 319 OK OK 2279 2297 2282 2283 2311 C3' G B 320 OK OK 2309 2330 2312 2313 2345 C3' G B 321 OK OK 2343 2364 2346 2347 2379 C3' U B 322 OK OK 2377 2395 2380 2381 2409 C3' G B 323 OK OK 2407 2428 2410 2411 2443 C3' G B 324 OK OK 2441 2462 2444 2445 2477 C3' A B 325 OK OK 2475 2495 2478 2479 2510 C3' A B 326 OK OK 2508 2528 2511 2512 2543 C3' C B 327 OK OK 2541 2559 2544 2545 2574 C3' U B 328 OK OK 2572 2590 2575 2576 2604 C3' G B 329 OK OK 2602 2623 2605 2606 2638 C3' U B 330 OK OK 2636 2654 2639 2640 2668 C3' G B 331 OK OK 2666 2687 2669 2670 2702 C3' A B 332 OK OK 2700 2720 2703 2704 2735 C3' A B 333 OK OK 2733 2753 2736 2737 2768 C3' G B 334 OK OK 2766 2787 2769 2770 2802 C3' U B 335 OK OK 2800 2818 2803 2804 2832 C3' U B 336 OK OK 2830 2848 2833 2834 2862 C3' C B 337 OK OK 2860 2878 2863 2864 2893 C3' G B 338 OK OK 2891 2912 2894 2895 2927 C3' G B 339 OK OK 2925 2946 2928 2929 2961 C3' A B 340 OK OK 2959 2979 2962 2963 2994 C3' A B 341 OK OK 2992 3012 2995 2996 3027 C3' C B 342 OK OK 3025 3043 3028 3029 3058 C3' A B 343 OK OK 3056 3076 3059 3060 3091 C3' C B 344 OK OK 3089 3107 3092 3093 3122 C3' C B 345 OK OK 3120 3138 3123 3124 3153 C3' C B 346 OK OK 3151 3169 3154 3155 3184 C3' G B 347 OK OK 3182 3203 3185 3186 3218 C3' G B 348 OK OK 3216 3237 3219 3220 3252 C3' C B 349 OK OK 3250 3268 3253 3254 3283 C3' C B 350 OK OK 3281 3299 3284 3285 3314 C3' G B 351 OK OK 3312 3333 3315 3316 3348 C3' C B 352 OK OK 3346 3364 3349 3350 3379 C3' A B 353 OK OK 3377 3397 3380 3381 3412 C3' A B 354 OK OK 3410 3430 3413 3414 3445 C3' C B 355 OK OK 3443 3461 3446 3447 3476 C3' C B 356 OK OK 3474 3492 3477 3478 3507 C3' C B 357 OK OK 3505 3523 3508 3509 3538 C3' U B 358 OK OK 3536 3554 3539 3540 3568 C3' G B 359 OK OK 3566 3587 3569 3570 3602 C3' G B 360 OK OK 3600 3621 3603 3604 3636 C3' G B 361 OK OK 3634 3655 3637 3638 3670 C3' A B 362 OK OK 3668 3688 3671 3672 3703 C3' G B 363 OK OK 3701 3722 3704 3705 3737 C3' A B 364 OK OK 3735 3755 3738 3739 3770 C3' G B 365 OK OK 3768 3789 3771 3772 3804 C3' G B 366 OK OK 3802 3823 3805 3806 3838 C3' U B 367 OK OK 3836 3854 3839 3840 3868 C3' C B 368 OK OK 3866 3884 3869 3870 3899 C3' C B 369 OK OK 3897 3915 3900 3901 3930 C3' C B 370 OK OK 3928 3946 3931 3932 3961 C3' A B 371 OK OK 3959 3979 3962 3963 3994 C3' G B 372 OK OK 3992 4013 3995 3996 4028 C3' G B 373 OK OK 4026 4047 4029 4030 4062 C3' G B 374 OK OK 4060 4081 4063 4064 4096 C3' U B 375 OK OK 4094 4112 4097 4098 4126 C3' U B 376 OK OK 4124 4142 4127 4128 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 895 C4' G B 276 OK OK 897 915 894 896 929 C4' G B 277 OK OK 931 949 928 930 963 C4' C B 278 OK OK 965 980 962 964 994 C4' G B 279 OK OK 996 1014 993 995 1028 C4' G B 280 OK OK 1030 1048 1027 1029 1062 C4' U B 281 OK OK 1064 1079 1061 1063 1102 C4' AP7 B 282 OK OK 1100 1118 1104 1103 1126 C4' C B 283 OK OK 1128 1143 1125 1127 1157 C4' U B 284 OK OK 1159 1174 1156 1158 1187 C4' A B 285 OK OK 1189 1206 1186 1188 1220 C4' G B 286 OK OK 1222 1240 1219 1221 1254 C4' U B 287 OK OK 1256 1271 1253 1255 1284 C4' U B 288 OK OK 1286 1301 1283 1285 1314 C4' G B 289 OK OK 1316 1334 1313 1315 1348 C4' A B 290 OK OK 1350 1367 1347 1349 1381 C4' G B 291 OK OK 1383 1401 1380 1382 1415 C4' A B 292 OK OK 1417 1434 1414 1416 1448 C4' A B 293 OK OK 1450 1467 1447 1449 1481 C4' A B 294 OK OK 1483 1500 1480 1482 1514 C4' C B 295 OK OK 1516 1531 1513 1515 1545 C4' U B 296 OK OK 1547 1562 1544 1546 1575 C4' A B 297 OK OK 1577 1594 1574 1576 1608 C4' G B 298 OK OK 1610 1628 1607 1609 1642 C4' C B 299 OK OK 1644 1659 1641 1643 1673 C4' U B 300 OK OK 1675 1690 1672 1674 1703 C4' C B 301 OK OK 1705 1720 1702 1704 1734 C4' U B 302 OK OK 1736 1751 1733 1735 1764 C4' G B 303 OK OK 1766 1784 1763 1765 1798 C4' U B 304 OK OK 1800 1815 1797 1799 1828 C4' A B 305 OK OK 1830 1847 1827 1829 1861 C4' U B 306 OK OK 1863 1878 1860 1862 1891 C4' C B 307 OK OK 1893 1908 1890 1892 1922 C4' U B 308 OK OK 1924 1939 1921 1923 1952 C4' G B 309 OK OK 1954 1972 1951 1953 1986 C4' G B 310 OK OK 1988 2006 1985 1987 2020 C4' C B 311 OK OK 2022 2037 2019 2021 2051 C4' G B 312 OK OK 2053 2071 2050 2052 2085 C4' G B 313 OK OK 2087 2105 2084 2086 2119 C4' A B 314 OK OK 2121 2138 2118 2120 2152 C4' C B 315 OK OK 2154 2169 2151 2153 2183 C4' C B 316 OK OK 2185 2200 2182 2184 2214 C4' C B 317 OK OK 2216 2231 2213 2215 2245 C4' G B 318 OK OK 2247 2265 2244 2246 2279 C4' U B 319 OK OK 2281 2296 2278 2280 2309 C4' G B 320 OK OK 2311 2329 2308 2310 2343 C4' G B 321 OK OK 2345 2363 2342 2344 2377 C4' U B 322 OK OK 2379 2394 2376 2378 2407 C4' G B 323 OK OK 2409 2427 2406 2408 2441 C4' G B 324 OK OK 2443 2461 2440 2442 2475 C4' A B 325 OK OK 2477 2494 2474 2476 2508 C4' A B 326 OK OK 2510 2527 2507 2509 2541 C4' C B 327 OK OK 2543 2558 2540 2542 2572 C4' U B 328 OK OK 2574 2589 2571 2573 2602 C4' G B 329 OK OK 2604 2622 2601 2603 2636 C4' U B 330 OK OK 2638 2653 2635 2637 2666 C4' G B 331 OK OK 2668 2686 2665 2667 2700 C4' A B 332 OK OK 2702 2719 2699 2701 2733 C4' A B 333 OK OK 2735 2752 2732 2734 2766 C4' G B 334 OK OK 2768 2786 2765 2767 2800 C4' U B 335 OK OK 2802 2817 2799 2801 2830 C4' U B 336 OK OK 2832 2847 2829 2831 2860 C4' C B 337 OK OK 2862 2877 2859 2861 2891 C4' G B 338 OK OK 2893 2911 2890 2892 2925 C4' G B 339 OK OK 2927 2945 2924 2926 2959 C4' A B 340 OK OK 2961 2978 2958 2960 2992 C4' A B 341 OK OK 2994 3011 2991 2993 3025 C4' C B 342 OK OK 3027 3042 3024 3026 3056 C4' A B 343 OK OK 3058 3075 3055 3057 3089 C4' C B 344 OK OK 3091 3106 3088 3090 3120 C4' C B 345 OK OK 3122 3137 3119 3121 3151 C4' C B 346 OK OK 3153 3168 3150 3152 3182 C4' G B 347 OK OK 3184 3202 3181 3183 3216 C4' G B 348 OK OK 3218 3236 3215 3217 3250 C4' C B 349 OK OK 3252 3267 3249 3251 3281 C4' C B 350 OK OK 3283 3298 3280 3282 3312 C4' G B 351 OK OK 3314 3332 3311 3313 3346 C4' C B 352 OK OK 3348 3363 3345 3347 3377 C4' A B 353 OK OK 3379 3396 3376 3378 3410 C4' A B 354 OK OK 3412 3429 3409 3411 3443 C4' C B 355 OK OK 3445 3460 3442 3444 3474 C4' C B 356 OK OK 3476 3491 3473 3475 3505 C4' C B 357 OK OK 3507 3522 3504 3506 3536 C4' U B 358 OK OK 3538 3553 3535 3537 3566 C4' G B 359 OK OK 3568 3586 3565 3567 3600 C4' G B 360 OK OK 3602 3620 3599 3601 3634 C4' G B 361 OK OK 3636 3654 3633 3635 3668 C4' A B 362 OK OK 3670 3687 3667 3669 3701 C4' G B 363 OK OK 3703 3721 3700 3702 3735 C4' A B 364 OK OK 3737 3754 3734 3736 3768 C4' G B 365 OK OK 3770 3788 3767 3769 3802 C4' G B 366 OK OK 3804 3822 3801 3803 3836 C4' U B 367 OK OK 3838 3853 3835 3837 3866 C4' C B 368 OK OK 3868 3883 3865 3867 3897 C4' C B 369 OK OK 3899 3914 3896 3898 3928 C4' C B 370 OK OK 3930 3945 3927 3929 3959 C4' A B 371 OK OK 3961 3978 3958 3960 3992 C4' G B 372 OK OK 3994 4012 3991 3993 4026 C4' G B 373 OK OK 4028 4046 4025 4027 4060 C4' G B 374 OK OK 4062 4080 4059 4061 4094 C4' U B 375 OK OK 4096 4111 4093 4095 4124 C4' U B 376 OK OK 4126 4141 4123 4125 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 894 C5' G B 276 OK OK 893 913 914 895 928 C5' G B 277 OK OK 927 947 948 929 962 C5' C B 278 OK OK 961 978 979 963 993 C5' G B 279 OK OK 992 1012 1013 994 1027 C5' G B 280 OK OK 1026 1046 1047 1028 1061 C5' U B 281 OK OK 1060 1077 1078 1062 1104 C5' AP7 B 282 OK OK 1105 1120 1119 1102 1125 C5' C B 283 OK OK 1124 1141 1142 1126 1156 C5' U B 284 OK OK 1155 1172 1173 1157 1186 C5' A B 285 OK OK 1185 1204 1205 1187 1219 C5' G B 286 OK OK 1218 1238 1239 1220 1253 C5' U B 287 OK OK 1252 1269 1270 1254 1283 C5' U B 288 OK OK 1282 1299 1300 1284 1313 C5' G B 289 OK OK 1312 1332 1333 1314 1347 C5' A B 290 OK OK 1346 1365 1366 1348 1380 C5' G B 291 OK OK 1379 1399 1400 1381 1414 C5' A B 292 OK OK 1413 1432 1433 1415 1447 C5' A B 293 OK OK 1446 1465 1466 1448 1480 C5' A B 294 OK OK 1479 1498 1499 1481 1513 C5' C B 295 OK OK 1512 1529 1530 1514 1544 C5' U B 296 OK OK 1543 1560 1561 1545 1574 C5' A B 297 OK OK 1573 1592 1593 1575 1607 C5' G B 298 OK OK 1606 1626 1627 1608 1641 C5' C B 299 OK OK 1640 1657 1658 1642 1672 C5' U B 300 OK OK 1671 1688 1689 1673 1702 C5' C B 301 OK OK 1701 1718 1719 1703 1733 C5' U B 302 OK OK 1732 1749 1750 1734 1763 C5' G B 303 OK OK 1762 1782 1783 1764 1797 C5' U B 304 OK OK 1796 1813 1814 1798 1827 C5' A B 305 OK OK 1826 1845 1846 1828 1860 C5' U B 306 OK OK 1859 1876 1877 1861 1890 C5' C B 307 OK OK 1889 1906 1907 1891 1921 C5' U B 308 OK OK 1920 1937 1938 1922 1951 C5' G B 309 OK OK 1950 1970 1971 1952 1985 C5' G B 310 OK OK 1984 2004 2005 1986 2019 C5' C B 311 OK OK 2018 2035 2036 2020 2050 C5' G B 312 OK OK 2049 2069 2070 2051 2084 C5' G B 313 OK OK 2083 2103 2104 2085 2118 C5' A B 314 OK OK 2117 2136 2137 2119 2151 C5' C B 315 OK OK 2150 2167 2168 2152 2182 C5' C B 316 OK OK 2181 2198 2199 2183 2213 C5' C B 317 OK OK 2212 2229 2230 2214 2244 C5' G B 318 OK OK 2243 2263 2264 2245 2278 C5' U B 319 OK OK 2277 2294 2295 2279 2308 C5' G B 320 OK OK 2307 2327 2328 2309 2342 C5' G B 321 OK OK 2341 2361 2362 2343 2376 C5' U B 322 OK OK 2375 2392 2393 2377 2406 C5' G B 323 OK OK 2405 2425 2426 2407 2440 C5' G B 324 OK OK 2439 2459 2460 2441 2474 C5' A B 325 OK OK 2473 2492 2493 2475 2507 C5' A B 326 OK OK 2506 2525 2526 2508 2540 C5' C B 327 OK OK 2539 2556 2557 2541 2571 C5' U B 328 OK OK 2570 2587 2588 2572 2601 C5' G B 329 OK OK 2600 2620 2621 2602 2635 C5' U B 330 OK OK 2634 2651 2652 2636 2665 C5' G B 331 OK OK 2664 2684 2685 2666 2699 C5' A B 332 OK OK 2698 2717 2718 2700 2732 C5' A B 333 OK OK 2731 2750 2751 2733 2765 C5' G B 334 OK OK 2764 2784 2785 2766 2799 C5' U B 335 OK OK 2798 2815 2816 2800 2829 C5' U B 336 OK OK 2828 2845 2846 2830 2859 C5' C B 337 OK OK 2858 2875 2876 2860 2890 C5' G B 338 OK OK 2889 2909 2910 2891 2924 C5' G B 339 OK OK 2923 2943 2944 2925 2958 C5' A B 340 OK OK 2957 2976 2977 2959 2991 C5' A B 341 OK OK 2990 3009 3010 2992 3024 C5' C B 342 OK OK 3023 3040 3041 3025 3055 C5' A B 343 OK OK 3054 3073 3074 3056 3088 C5' C B 344 OK OK 3087 3104 3105 3089 3119 C5' C B 345 OK OK 3118 3135 3136 3120 3150 C5' C B 346 OK OK 3149 3166 3167 3151 3181 C5' G B 347 OK OK 3180 3200 3201 3182 3215 C5' G B 348 OK OK 3214 3234 3235 3216 3249 C5' C B 349 OK OK 3248 3265 3266 3250 3280 C5' C B 350 OK OK 3279 3296 3297 3281 3311 C5' G B 351 OK OK 3310 3330 3331 3312 3345 C5' C B 352 OK OK 3344 3361 3362 3346 3376 C5' A B 353 OK OK 3375 3394 3395 3377 3409 C5' A B 354 OK OK 3408 3427 3428 3410 3442 C5' C B 355 OK OK 3441 3458 3459 3443 3473 C5' C B 356 OK OK 3472 3489 3490 3474 3504 C5' C B 357 OK OK 3503 3520 3521 3505 3535 C5' U B 358 OK OK 3534 3551 3552 3536 3565 C5' G B 359 OK OK 3564 3584 3585 3566 3599 C5' G B 360 OK OK 3598 3618 3619 3600 3633 C5' G B 361 OK OK 3632 3652 3653 3634 3667 C5' A B 362 OK OK 3666 3685 3686 3668 3700 C5' G B 363 OK OK 3699 3719 3720 3701 3734 C5' A B 364 OK OK 3733 3752 3753 3735 3767 C5' G B 365 OK OK 3766 3786 3787 3768 3801 C5' G B 366 OK OK 3800 3820 3821 3802 3835 C5' U B 367 OK OK 3834 3851 3852 3836 3865 C5' C B 368 OK OK 3864 3881 3882 3866 3896 C5' C B 369 OK OK 3895 3912 3913 3897 3927 C5' C B 370 OK OK 3926 3943 3944 3928 3958 C5' A B 371 OK OK 3957 3976 3977 3959 3991 C5' G B 372 OK OK 3990 4010 4011 3992 4025 C5' G B 373 OK OK 4024 4044 4045 4026 4059 C5' G B 374 OK OK 4058 4078 4079 4060 4093 C5' U B 375 OK OK 4092 4109 4110 4094 4123 C5' U B 376 OK OK 4122 4139 4140 4124 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 890 P G B 276 distorted distorted 891 892 893 924 P G B 277 distorted distorted 898 925 926 927 958 P C B 278 distorted distorted 932 959 960 961 989 P G B 279 distorted distorted 966 990 991 992 1023 P G B 280 distorted distorted 997 1024 1025 1026 1057 P U B 281 distorted distorted 1031 1058 1059 1060 1108 P AP7 B 282 distorted distorted 1065 1106 1107 1105 1121 P C B 283 distorted distorted 1101 1122 1123 1124 1152 P U B 284 distorted distorted 1129 1153 1154 1155 1182 P A B 285 distorted distorted 1160 1183 1184 1185 1215 P G B 286 distorted distorted 1190 1216 1217 1218 1249 P U B 287 distorted distorted 1223 1250 1251 1252 1279 P U B 288 distorted distorted 1257 1280 1281 1282 1309 P G B 289 distorted distorted 1287 1310 1311 1312 1343 P A B 290 distorted distorted 1317 1344 1345 1346 1376 P G B 291 distorted distorted 1351 1377 1378 1379 1410 P A B 292 distorted distorted 1384 1411 1412 1413 1443 P A B 293 distorted distorted 1418 1444 1445 1446 1476 P A B 294 distorted distorted 1451 1477 1478 1479 1509 P C B 295 distorted distorted 1484 1510 1511 1512 1540 P U B 296 distorted distorted 1517 1541 1542 1543 1570 P A B 297 distorted distorted 1548 1571 1572 1573 1603 P G B 298 distorted distorted 1578 1604 1605 1606 1637 P C B 299 distorted distorted 1611 1638 1639 1640 1668 P U B 300 distorted distorted 1645 1669 1670 1671 1698 P C B 301 distorted distorted 1676 1699 1700 1701 1729 P U B 302 distorted distorted 1706 1730 1731 1732 1759 P G B 303 distorted distorted 1737 1760 1761 1762 1793 P U B 304 distorted distorted 1767 1794 1795 1796 1823 P A B 305 distorted distorted 1801 1824 1825 1826 1856 P U B 306 distorted distorted 1831 1857 1858 1859 1886 P C B 307 distorted distorted 1864 1887 1888 1889 1917 P U B 308 distorted distorted 1894 1918 1919 1920 1947 P G B 309 distorted distorted 1925 1948 1949 1950 1981 P G B 310 distorted distorted 1955 1982 1983 1984 2015 P C B 311 distorted distorted 1989 2016 2017 2018 2046 P G B 312 distorted distorted 2023 2047 2048 2049 2080 P G B 313 distorted distorted 2054 2081 2082 2083 2114 P A B 314 distorted distorted 2088 2115 2116 2117 2147 P C B 315 distorted distorted 2122 2148 2149 2150 2178 P C B 316 distorted distorted 2155 2179 2180 2181 2209 P C B 317 distorted distorted 2186 2210 2211 2212 2240 P G B 318 distorted distorted 2217 2241 2242 2243 2274 P U B 319 distorted distorted 2248 2275 2276 2277 2304 P G B 320 distorted distorted 2282 2305 2306 2307 2338 P G B 321 distorted distorted 2312 2339 2340 2341 2372 P U B 322 distorted distorted 2346 2373 2374 2375 2402 P G B 323 distorted distorted 2380 2403 2404 2405 2436 P G B 324 distorted distorted 2410 2437 2438 2439 2470 P A B 325 distorted distorted 2444 2471 2472 2473 2503 P A B 326 distorted distorted 2478 2504 2505 2506 2536 P C B 327 distorted distorted 2511 2537 2538 2539 2567 P U B 328 distorted distorted 2544 2568 2569 2570 2597 P G B 329 distorted distorted 2575 2598 2599 2600 2631 P U B 330 distorted distorted 2605 2632 2633 2634 2661 P G B 331 distorted distorted 2639 2662 2663 2664 2695 P A B 332 distorted distorted 2669 2696 2697 2698 2728 P A B 333 distorted distorted 2703 2729 2730 2731 2761 P G B 334 distorted distorted 2736 2762 2763 2764 2795 P U B 335 distorted distorted 2769 2796 2797 2798 2825 P U B 336 distorted distorted 2803 2826 2827 2828 2855 P C B 337 distorted distorted 2833 2856 2857 2858 2886 P G B 338 distorted distorted 2863 2887 2888 2889 2920 P G B 339 distorted distorted 2894 2921 2922 2923 2954 P A B 340 distorted distorted 2928 2955 2956 2957 2987 P A B 341 distorted distorted 2962 2988 2989 2990 3020 P C B 342 distorted distorted 2995 3021 3022 3023 3051 P A B 343 distorted distorted 3028 3052 3053 3054 3084 P C B 344 distorted distorted 3059 3085 3086 3087 3115 P C B 345 distorted distorted 3092 3116 3117 3118 3146 P C B 346 distorted distorted 3123 3147 3148 3149 3177 P G B 347 distorted distorted 3154 3178 3179 3180 3211 P G B 348 distorted distorted 3185 3212 3213 3214 3245 P C B 349 distorted distorted 3219 3246 3247 3248 3276 P C B 350 distorted distorted 3253 3277 3278 3279 3307 P G B 351 distorted distorted 3284 3308 3309 3310 3341 P C B 352 distorted distorted 3315 3342 3343 3344 3372 P A B 353 distorted distorted 3349 3373 3374 3375 3405 P A B 354 distorted distorted 3380 3406 3407 3408 3438 P C B 355 distorted distorted 3413 3439 3440 3441 3469 P C B 356 distorted distorted 3446 3470 3471 3472 3500 P C B 357 distorted distorted 3477 3501 3502 3503 3531 P U B 358 distorted distorted 3508 3532 3533 3534 3561 P G B 359 distorted distorted 3539 3562 3563 3564 3595 P G B 360 distorted distorted 3569 3596 3597 3598 3629 P G B 361 distorted distorted 3603 3630 3631 3632 3663 P A B 362 distorted distorted 3637 3664 3665 3666 3696 P G B 363 distorted distorted 3671 3697 3698 3699 3730 P A B 364 distorted distorted 3704 3731 3732 3733 3763 P G B 365 distorted distorted 3738 3764 3765 3766 3797 P G B 366 distorted distorted 3771 3798 3799 3800 3831 P U B 367 distorted distorted 3805 3832 3833 3834 3861 P C B 368 distorted distorted 3839 3862 3863 3864 3892 P C B 369 distorted distorted 3869 3893 3894 3895 3923 P C B 370 distorted distorted 3900 3924 3925 3926 3954 P A B 371 distorted distorted 3931 3955 3956 3957 3987 P G B 372 distorted distorted 3962 3988 3989 3990 4021 P G B 373 distorted distorted 3995 4022 4023 4024 4055 P G B 374 distorted distorted 4029 4056 4057 4058 4089 P U B 375 distorted distorted 4063 4090 4091 4092 4119 P U B 376 distorted distorted 4097 4120 4121 4122 ---------------------------------------------------------------------------------