ID code: '1T1O' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P U A1061 2 P G A1062 3 P G A1063 4 P C A1064 5 P U A1065 6 P U A1066 7 P A A1067 8 P G A1068 9 P A A1069 10 P A A1070 11 P G A1071 12 P C A1072 14 P G B1906 15 P G B1907 16 P C B1908 17 P C B1909 18 P G B1910 19 P U B1911 20 P A B1912 21 P A B1913 22 P C B1914 23 P U B1915 24 P A B1916 25 P U B1917 26 P A B1918 27 P A B1919 28 P C B1920 29 P G B1921 30 P G B1922 31 P U B1923 32 P C B1924 34 P G C1401 35 P C C1402 36 P C C1403 37 P C C1404 38 P G C1405 39 P U C1406 40 P C C1407 41 P A C1408 42 P C C1409 43 P A C1410 44 P C C1411 45 P C C1412 46 P A C1413 47 P U C1414 48 P G C1415 49 P G C1416 50 P G C1417 51 P A C1418 52 P G C1419 53 P U C1420 54 P A C1480 55 P U C1481 56 P G C1482 57 P A C1483 58 P C C1484 59 P U C1485 60 P G C1486 61 P G C1487 62 P G C1488 63 P G C1489 64 P U C1490 65 P G C1491 66 P A C1492 67 P A C1493 68 P G C1494 69 P U C1495 70 P C C1496 71 P G C1497 72 P U C1498 73 P A C1499 74 P A C1500 75 P C C1501 ---------------------------------------------------------------------------------