ID code: '1S9S' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' G A 276 alpha beta 7 30 13 10 46 C1' G A 277 alpha beta 41 64 47 44 80 C1' C A 278 alpha beta 75 95 81 78 111 C1' G A 279 alpha beta 106 129 112 109 145 C1' G A 280 alpha beta 140 163 146 143 179 C1' U A 281 alpha beta 174 194 180 177 209 C1' A A 282 alpha beta 204 226 210 207 242 C1' C A 283 alpha beta 237 257 243 240 273 C1' U A 284 alpha beta 268 288 274 271 303 C1' A A 285 alpha beta 298 320 304 301 336 C1' G A 286 alpha beta 331 354 337 334 370 C1' U A 287 alpha beta 365 385 371 368 400 C1' U A 288 alpha beta 395 415 401 398 430 C1' G A 289 alpha beta 425 448 431 428 464 C1' A A 290 alpha beta 459 481 465 462 497 C1' G A 291 alpha beta 492 515 498 495 531 C1' A A 292 alpha beta 526 548 532 529 564 C1' A A 293 alpha beta 559 581 565 562 597 C1' A A 294 alpha beta 592 614 598 595 630 C1' C A 295 alpha beta 625 645 631 628 661 C1' U A 296 alpha beta 656 676 662 659 691 C1' A A 297 alpha beta 686 708 692 689 724 C1' G A 298 alpha beta 719 742 725 722 758 C1' C A 299 alpha beta 753 773 759 756 789 C1' U A 300 alpha beta 784 804 790 787 819 C1' C A 301 alpha beta 814 834 820 817 850 C1' U A 302 alpha beta 845 865 851 848 880 C1' G A 303 alpha beta 875 898 881 878 914 C1' U A 304 alpha beta 909 929 915 912 944 C1' A A 305 alpha beta 939 961 945 942 977 C1' U A 306 alpha beta 972 992 978 975 1007 C1' C A 307 alpha beta 1002 1022 1008 1005 1038 C1' U A 308 alpha beta 1033 1053 1039 1036 1068 C1' G A 309 alpha beta 1063 1086 1069 1066 1102 C1' G A 310 alpha beta 1097 1120 1103 1100 1136 C1' C A 311 alpha beta 1131 1151 1137 1134 1167 C1' G A 312 alpha beta 1162 1185 1168 1165 1201 C1' G A 313 alpha beta 1196 1219 1202 1199 1235 C1' A A 314 alpha beta 1230 1252 1236 1233 1268 C1' C A 315 alpha beta 1263 1283 1269 1266 1299 C1' C A 316 alpha beta 1294 1314 1300 1297 1330 C1' C A 317 alpha beta 1325 1345 1331 1328 1361 C1' G A 318 alpha beta 1356 1379 1362 1359 1395 C1' U A 319 alpha beta 1390 1410 1396 1393 1425 C1' G A 320 alpha beta 1420 1443 1426 1423 1459 C1' G A 321 alpha beta 1454 1477 1460 1457 1493 C1' U A 322 alpha beta 1488 1508 1494 1491 1523 C1' G A 323 alpha beta 1518 1541 1524 1521 1557 C1' G A 324 alpha beta 1552 1575 1558 1555 1591 C1' A A 325 alpha beta 1586 1608 1592 1589 1624 C1' A A 326 alpha beta 1619 1641 1625 1622 1657 C1' C A 327 alpha beta 1652 1672 1658 1655 1688 C1' U A 328 alpha beta 1683 1703 1689 1686 1718 C1' G A 329 alpha beta 1713 1736 1719 1716 1752 C1' U A 330 alpha beta 1747 1767 1753 1750 1782 C1' G A 331 alpha beta 1777 1800 1783 1780 1816 C1' A A 332 alpha beta 1811 1833 1817 1814 1849 C1' A A 333 alpha beta 1844 1866 1850 1847 1882 C1' G A 334 alpha beta 1877 1900 1883 1880 1916 C1' U A 335 alpha beta 1911 1931 1917 1914 1946 C1' U A 336 alpha beta 1941 1961 1947 1944 1976 C1' C A 337 alpha beta 1971 1991 1977 1974 2007 C1' G A 338 alpha beta 2002 2025 2008 2005 2041 C1' G A 339 alpha beta 2036 2059 2042 2039 2075 C1' A A 340 alpha beta 2070 2092 2076 2073 2108 C1' A A 341 alpha beta 2103 2125 2109 2106 2141 C1' C A 342 alpha beta 2136 2156 2142 2139 2172 C1' A A 343 alpha beta 2167 2189 2173 2170 2205 C1' C A 344 alpha beta 2200 2220 2206 2203 2236 C1' C A 345 alpha beta 2231 2251 2237 2234 2267 C1' C A 346 alpha beta 2262 2282 2268 2265 2298 C1' G A 347 alpha beta 2293 2316 2299 2296 2332 C1' G A 348 alpha beta 2327 2350 2333 2330 2366 C1' C A 349 alpha beta 2361 2381 2367 2364 2397 C1' C A 350 alpha beta 2392 2412 2398 2395 2428 C1' G A 351 alpha beta 2423 2446 2429 2426 2462 C1' C A 352 alpha beta 2457 2477 2463 2460 2493 C1' A A 353 alpha beta 2488 2510 2494 2491 2526 C1' A A 354 alpha beta 2521 2543 2527 2524 2559 C1' C A 355 alpha beta 2554 2574 2560 2557 2590 C1' C A 356 alpha beta 2585 2605 2591 2588 2621 C1' C A 357 alpha beta 2616 2636 2622 2619 2652 C1' U A 358 alpha beta 2647 2667 2653 2650 2682 C1' G A 359 alpha beta 2677 2700 2683 2680 2716 C1' G A 360 alpha beta 2711 2734 2717 2714 2750 C1' G A 361 alpha beta 2745 2768 2751 2748 2784 C1' A A 362 alpha beta 2779 2801 2785 2782 2817 C1' G A 363 alpha beta 2812 2835 2818 2815 2851 C1' A A 364 alpha beta 2846 2868 2852 2849 2884 C1' G A 365 alpha beta 2879 2902 2885 2882 2918 C1' G A 366 alpha beta 2913 2936 2919 2916 2952 C1' U A 367 alpha beta 2947 2967 2953 2950 2982 C1' C A 368 alpha beta 2977 2997 2983 2980 3013 C1' C A 369 alpha beta 3008 3028 3014 3011 3044 C1' C A 370 alpha beta 3039 3059 3045 3042 3075 C1' A A 371 alpha beta 3070 3092 3076 3073 3108 C1' G A 372 alpha beta 3103 3126 3109 3106 3142 C1' G A 373 alpha beta 3137 3160 3143 3140 3176 C1' G A 374 alpha beta 3171 3194 3177 3174 3210 C1' U A 375 alpha beta 3205 3225 3211 3208 3240 C1' U A 376 alpha beta 3235 3255 3241 3238 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' G A 276 OK OK 12 8 28 11 44 C2' G A 277 OK OK 46 42 62 45 78 C2' C A 278 OK OK 80 76 93 79 109 C2' G A 279 OK OK 111 107 127 110 143 C2' G A 280 OK OK 145 141 161 144 177 C2' U A 281 OK OK 179 175 192 178 207 C2' A A 282 OK OK 209 205 224 208 240 C2' C A 283 OK OK 242 238 255 241 271 C2' U A 284 OK OK 273 269 286 272 301 C2' A A 285 OK OK 303 299 318 302 334 C2' G A 286 OK OK 336 332 352 335 368 C2' U A 287 OK OK 370 366 383 369 398 C2' U A 288 OK OK 400 396 413 399 428 C2' G A 289 OK OK 430 426 446 429 462 C2' A A 290 OK OK 464 460 479 463 495 C2' G A 291 OK OK 497 493 513 496 529 C2' A A 292 OK OK 531 527 546 530 562 C2' A A 293 OK OK 564 560 579 563 595 C2' A A 294 OK OK 597 593 612 596 628 C2' C A 295 OK OK 630 626 643 629 659 C2' U A 296 OK OK 661 657 674 660 689 C2' A A 297 OK OK 691 687 706 690 722 C2' G A 298 OK OK 724 720 740 723 756 C2' C A 299 OK OK 758 754 771 757 787 C2' U A 300 OK OK 789 785 802 788 817 C2' C A 301 OK OK 819 815 832 818 848 C2' U A 302 OK OK 850 846 863 849 878 C2' G A 303 OK OK 880 876 896 879 912 C2' U A 304 OK OK 914 910 927 913 942 C2' A A 305 OK OK 944 940 959 943 975 C2' U A 306 OK OK 977 973 990 976 1005 C2' C A 307 OK OK 1007 1003 1020 1006 1036 C2' U A 308 OK OK 1038 1034 1051 1037 1066 C2' G A 309 OK OK 1068 1064 1084 1067 1100 C2' G A 310 OK OK 1102 1098 1118 1101 1134 C2' C A 311 OK OK 1136 1132 1149 1135 1165 C2' G A 312 OK OK 1167 1163 1183 1166 1199 C2' G A 313 OK OK 1201 1197 1217 1200 1233 C2' A A 314 OK OK 1235 1231 1250 1234 1266 C2' C A 315 OK OK 1268 1264 1281 1267 1297 C2' C A 316 OK OK 1299 1295 1312 1298 1328 C2' C A 317 OK OK 1330 1326 1343 1329 1359 C2' G A 318 OK OK 1361 1357 1377 1360 1393 C2' U A 319 OK OK 1395 1391 1408 1394 1423 C2' G A 320 OK OK 1425 1421 1441 1424 1457 C2' G A 321 OK OK 1459 1455 1475 1458 1491 C2' U A 322 OK OK 1493 1489 1506 1492 1521 C2' G A 323 OK OK 1523 1519 1539 1522 1555 C2' G A 324 OK OK 1557 1553 1573 1556 1589 C2' A A 325 OK OK 1591 1587 1606 1590 1622 C2' A A 326 OK OK 1624 1620 1639 1623 1655 C2' C A 327 OK OK 1657 1653 1670 1656 1686 C2' U A 328 OK OK 1688 1684 1701 1687 1716 C2' G A 329 OK OK 1718 1714 1734 1717 1750 C2' U A 330 OK OK 1752 1748 1765 1751 1780 C2' G A 331 OK OK 1782 1778 1798 1781 1814 C2' A A 332 OK OK 1816 1812 1831 1815 1847 C2' A A 333 OK OK 1849 1845 1864 1848 1880 C2' G A 334 OK OK 1882 1878 1898 1881 1914 C2' U A 335 OK OK 1916 1912 1929 1915 1944 C2' U A 336 OK OK 1946 1942 1959 1945 1974 C2' C A 337 OK OK 1976 1972 1989 1975 2005 C2' G A 338 OK OK 2007 2003 2023 2006 2039 C2' G A 339 OK OK 2041 2037 2057 2040 2073 C2' A A 340 OK OK 2075 2071 2090 2074 2106 C2' A A 341 OK OK 2108 2104 2123 2107 2139 C2' C A 342 OK OK 2141 2137 2154 2140 2170 C2' A A 343 OK OK 2172 2168 2187 2171 2203 C2' C A 344 OK OK 2205 2201 2218 2204 2234 C2' C A 345 OK OK 2236 2232 2249 2235 2265 C2' C A 346 OK OK 2267 2263 2280 2266 2296 C2' G A 347 OK OK 2298 2294 2314 2297 2330 C2' G A 348 OK OK 2332 2328 2348 2331 2364 C2' C A 349 OK OK 2366 2362 2379 2365 2395 C2' C A 350 OK OK 2397 2393 2410 2396 2426 C2' G A 351 OK OK 2428 2424 2444 2427 2460 C2' C A 352 OK OK 2462 2458 2475 2461 2491 C2' A A 353 OK OK 2493 2489 2508 2492 2524 C2' A A 354 OK OK 2526 2522 2541 2525 2557 C2' C A 355 OK OK 2559 2555 2572 2558 2588 C2' C A 356 OK OK 2590 2586 2603 2589 2619 C2' C A 357 OK OK 2621 2617 2634 2620 2650 C2' U A 358 OK OK 2652 2648 2665 2651 2680 C2' G A 359 OK OK 2682 2678 2698 2681 2714 C2' G A 360 OK OK 2716 2712 2732 2715 2748 C2' G A 361 OK OK 2750 2746 2766 2749 2782 C2' A A 362 OK OK 2784 2780 2799 2783 2815 C2' G A 363 OK OK 2817 2813 2833 2816 2849 C2' A A 364 OK OK 2851 2847 2866 2850 2882 C2' G A 365 OK OK 2884 2880 2900 2883 2916 C2' G A 366 OK OK 2918 2914 2934 2917 2950 C2' U A 367 OK OK 2952 2948 2965 2951 2980 C2' C A 368 OK OK 2982 2978 2995 2981 3011 C2' C A 369 OK OK 3013 3009 3026 3012 3042 C2' C A 370 OK OK 3044 3040 3057 3043 3073 C2' A A 371 OK OK 3075 3071 3090 3074 3106 C2' G A 372 OK OK 3108 3104 3124 3107 3140 C2' G A 373 OK OK 3142 3138 3158 3141 3174 C2' G A 374 OK OK 3176 3172 3192 3175 3208 C2' U A 375 OK OK 3210 3206 3223 3209 3238 C2' U A 376 OK OK 3240 3236 3253 3239 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' G A 276 OK OK 6 27 9 10 42 C3' G A 277 OK OK 40 61 43 44 76 C3' C A 278 OK OK 74 92 77 78 107 C3' G A 279 OK OK 105 126 108 109 141 C3' G A 280 OK OK 139 160 142 143 175 C3' U A 281 OK OK 173 191 176 177 205 C3' A A 282 OK OK 203 223 206 207 238 C3' C A 283 OK OK 236 254 239 240 269 C3' U A 284 OK OK 267 285 270 271 299 C3' A A 285 OK OK 297 317 300 301 332 C3' G A 286 OK OK 330 351 333 334 366 C3' U A 287 OK OK 364 382 367 368 396 C3' U A 288 OK OK 394 412 397 398 426 C3' G A 289 OK OK 424 445 427 428 460 C3' A A 290 OK OK 458 478 461 462 493 C3' G A 291 OK OK 491 512 494 495 527 C3' A A 292 OK OK 525 545 528 529 560 C3' A A 293 OK OK 558 578 561 562 593 C3' A A 294 OK OK 591 611 594 595 626 C3' C A 295 OK OK 624 642 627 628 657 C3' U A 296 OK OK 655 673 658 659 687 C3' A A 297 OK OK 685 705 688 689 720 C3' G A 298 OK OK 718 739 721 722 754 C3' C A 299 OK OK 752 770 755 756 785 C3' U A 300 OK OK 783 801 786 787 815 C3' C A 301 OK OK 813 831 816 817 846 C3' U A 302 OK OK 844 862 847 848 876 C3' G A 303 OK OK 874 895 877 878 910 C3' U A 304 OK OK 908 926 911 912 940 C3' A A 305 OK OK 938 958 941 942 973 C3' U A 306 OK OK 971 989 974 975 1003 C3' C A 307 OK OK 1001 1019 1004 1005 1034 C3' U A 308 OK OK 1032 1050 1035 1036 1064 C3' G A 309 OK OK 1062 1083 1065 1066 1098 C3' G A 310 OK OK 1096 1117 1099 1100 1132 C3' C A 311 OK OK 1130 1148 1133 1134 1163 C3' G A 312 OK OK 1161 1182 1164 1165 1197 C3' G A 313 OK OK 1195 1216 1198 1199 1231 C3' A A 314 OK OK 1229 1249 1232 1233 1264 C3' C A 315 OK OK 1262 1280 1265 1266 1295 C3' C A 316 OK OK 1293 1311 1296 1297 1326 C3' C A 317 OK OK 1324 1342 1327 1328 1357 C3' G A 318 OK OK 1355 1376 1358 1359 1391 C3' U A 319 OK OK 1389 1407 1392 1393 1421 C3' G A 320 OK OK 1419 1440 1422 1423 1455 C3' G A 321 OK OK 1453 1474 1456 1457 1489 C3' U A 322 OK OK 1487 1505 1490 1491 1519 C3' G A 323 OK OK 1517 1538 1520 1521 1553 C3' G A 324 OK OK 1551 1572 1554 1555 1587 C3' A A 325 OK OK 1585 1605 1588 1589 1620 C3' A A 326 OK OK 1618 1638 1621 1622 1653 C3' C A 327 OK OK 1651 1669 1654 1655 1684 C3' U A 328 OK OK 1682 1700 1685 1686 1714 C3' G A 329 OK OK 1712 1733 1715 1716 1748 C3' U A 330 OK OK 1746 1764 1749 1750 1778 C3' G A 331 OK OK 1776 1797 1779 1780 1812 C3' A A 332 OK OK 1810 1830 1813 1814 1845 C3' A A 333 OK OK 1843 1863 1846 1847 1878 C3' G A 334 OK OK 1876 1897 1879 1880 1912 C3' U A 335 OK OK 1910 1928 1913 1914 1942 C3' U A 336 OK OK 1940 1958 1943 1944 1972 C3' C A 337 OK OK 1970 1988 1973 1974 2003 C3' G A 338 OK OK 2001 2022 2004 2005 2037 C3' G A 339 OK OK 2035 2056 2038 2039 2071 C3' A A 340 OK OK 2069 2089 2072 2073 2104 C3' A A 341 OK OK 2102 2122 2105 2106 2137 C3' C A 342 OK OK 2135 2153 2138 2139 2168 C3' A A 343 OK OK 2166 2186 2169 2170 2201 C3' C A 344 OK OK 2199 2217 2202 2203 2232 C3' C A 345 OK OK 2230 2248 2233 2234 2263 C3' C A 346 OK OK 2261 2279 2264 2265 2294 C3' G A 347 OK OK 2292 2313 2295 2296 2328 C3' G A 348 OK OK 2326 2347 2329 2330 2362 C3' C A 349 OK OK 2360 2378 2363 2364 2393 C3' C A 350 OK OK 2391 2409 2394 2395 2424 C3' G A 351 OK OK 2422 2443 2425 2426 2458 C3' C A 352 OK OK 2456 2474 2459 2460 2489 C3' A A 353 OK OK 2487 2507 2490 2491 2522 C3' A A 354 OK OK 2520 2540 2523 2524 2555 C3' C A 355 OK OK 2553 2571 2556 2557 2586 C3' C A 356 OK OK 2584 2602 2587 2588 2617 C3' C A 357 OK OK 2615 2633 2618 2619 2648 C3' U A 358 OK OK 2646 2664 2649 2650 2678 C3' G A 359 OK OK 2676 2697 2679 2680 2712 C3' G A 360 OK OK 2710 2731 2713 2714 2746 C3' G A 361 OK OK 2744 2765 2747 2748 2780 C3' A A 362 OK OK 2778 2798 2781 2782 2813 C3' G A 363 OK OK 2811 2832 2814 2815 2847 C3' A A 364 OK OK 2845 2865 2848 2849 2880 C3' G A 365 OK OK 2878 2899 2881 2882 2914 C3' G A 366 OK OK 2912 2933 2915 2916 2948 C3' U A 367 OK OK 2946 2964 2949 2950 2978 C3' C A 368 OK OK 2976 2994 2979 2980 3009 C3' C A 369 OK OK 3007 3025 3010 3011 3040 C3' C A 370 OK OK 3038 3056 3041 3042 3071 C3' A A 371 OK OK 3069 3089 3072 3073 3104 C3' G A 372 OK OK 3102 3123 3105 3106 3138 C3' G A 373 OK OK 3136 3157 3139 3140 3172 C3' G A 374 OK OK 3170 3191 3173 3174 3206 C3' U A 375 OK OK 3204 3222 3207 3208 3236 C3' U A 376 OK OK 3234 3252 3237 3238 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' G A 276 OK OK 8 26 5 7 40 C4' G A 277 OK OK 42 60 39 41 74 C4' C A 278 OK OK 76 91 73 75 105 C4' G A 279 OK OK 107 125 104 106 139 C4' G A 280 OK OK 141 159 138 140 173 C4' U A 281 OK OK 175 190 172 174 203 C4' A A 282 OK OK 205 222 202 204 236 C4' C A 283 OK OK 238 253 235 237 267 C4' U A 284 OK OK 269 284 266 268 297 C4' A A 285 OK OK 299 316 296 298 330 C4' G A 286 OK OK 332 350 329 331 364 C4' U A 287 OK OK 366 381 363 365 394 C4' U A 288 OK OK 396 411 393 395 424 C4' G A 289 OK OK 426 444 423 425 458 C4' A A 290 OK OK 460 477 457 459 491 C4' G A 291 OK OK 493 511 490 492 525 C4' A A 292 OK OK 527 544 524 526 558 C4' A A 293 OK OK 560 577 557 559 591 C4' A A 294 OK OK 593 610 590 592 624 C4' C A 295 OK OK 626 641 623 625 655 C4' U A 296 OK OK 657 672 654 656 685 C4' A A 297 OK OK 687 704 684 686 718 C4' G A 298 OK OK 720 738 717 719 752 C4' C A 299 OK OK 754 769 751 753 783 C4' U A 300 OK OK 785 800 782 784 813 C4' C A 301 OK OK 815 830 812 814 844 C4' U A 302 OK OK 846 861 843 845 874 C4' G A 303 OK OK 876 894 873 875 908 C4' U A 304 OK OK 910 925 907 909 938 C4' A A 305 OK OK 940 957 937 939 971 C4' U A 306 OK OK 973 988 970 972 1001 C4' C A 307 OK OK 1003 1018 1000 1002 1032 C4' U A 308 OK OK 1034 1049 1031 1033 1062 C4' G A 309 OK OK 1064 1082 1061 1063 1096 C4' G A 310 OK OK 1098 1116 1095 1097 1130 C4' C A 311 OK OK 1132 1147 1129 1131 1161 C4' G A 312 OK OK 1163 1181 1160 1162 1195 C4' G A 313 OK OK 1197 1215 1194 1196 1229 C4' A A 314 OK OK 1231 1248 1228 1230 1262 C4' C A 315 OK OK 1264 1279 1261 1263 1293 C4' C A 316 OK OK 1295 1310 1292 1294 1324 C4' C A 317 OK OK 1326 1341 1323 1325 1355 C4' G A 318 OK OK 1357 1375 1354 1356 1389 C4' U A 319 OK OK 1391 1406 1388 1390 1419 C4' G A 320 OK OK 1421 1439 1418 1420 1453 C4' G A 321 OK OK 1455 1473 1452 1454 1487 C4' U A 322 OK OK 1489 1504 1486 1488 1517 C4' G A 323 OK OK 1519 1537 1516 1518 1551 C4' G A 324 OK OK 1553 1571 1550 1552 1585 C4' A A 325 OK OK 1587 1604 1584 1586 1618 C4' A A 326 OK OK 1620 1637 1617 1619 1651 C4' C A 327 OK OK 1653 1668 1650 1652 1682 C4' U A 328 OK OK 1684 1699 1681 1683 1712 C4' G A 329 OK OK 1714 1732 1711 1713 1746 C4' U A 330 OK OK 1748 1763 1745 1747 1776 C4' G A 331 OK OK 1778 1796 1775 1777 1810 C4' A A 332 OK OK 1812 1829 1809 1811 1843 C4' A A 333 OK OK 1845 1862 1842 1844 1876 C4' G A 334 OK OK 1878 1896 1875 1877 1910 C4' U A 335 OK OK 1912 1927 1909 1911 1940 C4' U A 336 OK OK 1942 1957 1939 1941 1970 C4' C A 337 OK OK 1972 1987 1969 1971 2001 C4' G A 338 OK OK 2003 2021 2000 2002 2035 C4' G A 339 OK OK 2037 2055 2034 2036 2069 C4' A A 340 OK OK 2071 2088 2068 2070 2102 C4' A A 341 OK OK 2104 2121 2101 2103 2135 C4' C A 342 OK OK 2137 2152 2134 2136 2166 C4' A A 343 OK OK 2168 2185 2165 2167 2199 C4' C A 344 OK OK 2201 2216 2198 2200 2230 C4' C A 345 OK OK 2232 2247 2229 2231 2261 C4' C A 346 OK OK 2263 2278 2260 2262 2292 C4' G A 347 OK OK 2294 2312 2291 2293 2326 C4' G A 348 OK OK 2328 2346 2325 2327 2360 C4' C A 349 OK OK 2362 2377 2359 2361 2391 C4' C A 350 OK OK 2393 2408 2390 2392 2422 C4' G A 351 OK OK 2424 2442 2421 2423 2456 C4' C A 352 OK OK 2458 2473 2455 2457 2487 C4' A A 353 OK OK 2489 2506 2486 2488 2520 C4' A A 354 OK OK 2522 2539 2519 2521 2553 C4' C A 355 OK OK 2555 2570 2552 2554 2584 C4' C A 356 OK OK 2586 2601 2583 2585 2615 C4' C A 357 OK OK 2617 2632 2614 2616 2646 C4' U A 358 OK OK 2648 2663 2645 2647 2676 C4' G A 359 OK OK 2678 2696 2675 2677 2710 C4' G A 360 OK OK 2712 2730 2709 2711 2744 C4' G A 361 OK OK 2746 2764 2743 2745 2778 C4' A A 362 OK OK 2780 2797 2777 2779 2811 C4' G A 363 OK OK 2813 2831 2810 2812 2845 C4' A A 364 OK OK 2847 2864 2844 2846 2878 C4' G A 365 OK OK 2880 2898 2877 2879 2912 C4' G A 366 OK OK 2914 2932 2911 2913 2946 C4' U A 367 OK OK 2948 2963 2945 2947 2976 C4' C A 368 OK OK 2978 2993 2975 2977 3007 C4' C A 369 OK OK 3009 3024 3006 3008 3038 C4' C A 370 OK OK 3040 3055 3037 3039 3069 C4' A A 371 OK OK 3071 3088 3068 3070 3102 C4' G A 372 OK OK 3104 3122 3101 3103 3136 C4' G A 373 OK OK 3138 3156 3135 3137 3170 C4' G A 374 OK OK 3172 3190 3169 3171 3204 C4' U A 375 OK OK 3206 3221 3203 3205 3234 C4' U A 376 OK OK 3236 3251 3233 3235 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' G A 276 OK OK 4 24 25 6 39 C5' G A 277 OK OK 38 58 59 40 73 C5' C A 278 OK OK 72 89 90 74 104 C5' G A 279 OK OK 103 123 124 105 138 C5' G A 280 OK OK 137 157 158 139 172 C5' U A 281 OK OK 171 188 189 173 202 C5' A A 282 OK OK 201 220 221 203 235 C5' C A 283 OK OK 234 251 252 236 266 C5' U A 284 OK OK 265 282 283 267 296 C5' A A 285 OK OK 295 314 315 297 329 C5' G A 286 OK OK 328 348 349 330 363 C5' U A 287 OK OK 362 379 380 364 393 C5' U A 288 OK OK 392 409 410 394 423 C5' G A 289 OK OK 422 442 443 424 457 C5' A A 290 OK OK 456 475 476 458 490 C5' G A 291 OK OK 489 509 510 491 524 C5' A A 292 OK OK 523 542 543 525 557 C5' A A 293 OK OK 556 575 576 558 590 C5' A A 294 OK OK 589 608 609 591 623 C5' C A 295 OK OK 622 639 640 624 654 C5' U A 296 OK OK 653 670 671 655 684 C5' A A 297 OK OK 683 702 703 685 717 C5' G A 298 OK OK 716 736 737 718 751 C5' C A 299 OK OK 750 767 768 752 782 C5' U A 300 OK OK 781 798 799 783 812 C5' C A 301 OK OK 811 828 829 813 843 C5' U A 302 OK OK 842 859 860 844 873 C5' G A 303 OK OK 872 892 893 874 907 C5' U A 304 OK OK 906 923 924 908 937 C5' A A 305 OK OK 936 955 956 938 970 C5' U A 306 OK OK 969 986 987 971 1000 C5' C A 307 OK OK 999 1016 1017 1001 1031 C5' U A 308 OK OK 1030 1047 1048 1032 1061 C5' G A 309 OK OK 1060 1080 1081 1062 1095 C5' G A 310 OK OK 1094 1114 1115 1096 1129 C5' C A 311 OK OK 1128 1145 1146 1130 1160 C5' G A 312 OK OK 1159 1179 1180 1161 1194 C5' G A 313 OK OK 1193 1213 1214 1195 1228 C5' A A 314 OK OK 1227 1246 1247 1229 1261 C5' C A 315 OK OK 1260 1277 1278 1262 1292 C5' C A 316 OK OK 1291 1308 1309 1293 1323 C5' C A 317 OK OK 1322 1339 1340 1324 1354 C5' G A 318 OK OK 1353 1373 1374 1355 1388 C5' U A 319 OK OK 1387 1404 1405 1389 1418 C5' G A 320 OK OK 1417 1437 1438 1419 1452 C5' G A 321 OK OK 1451 1471 1472 1453 1486 C5' U A 322 OK OK 1485 1502 1503 1487 1516 C5' G A 323 OK OK 1515 1535 1536 1517 1550 C5' G A 324 OK OK 1549 1569 1570 1551 1584 C5' A A 325 OK OK 1583 1602 1603 1585 1617 C5' A A 326 OK OK 1616 1635 1636 1618 1650 C5' C A 327 OK OK 1649 1666 1667 1651 1681 C5' U A 328 OK OK 1680 1697 1698 1682 1711 C5' G A 329 OK OK 1710 1730 1731 1712 1745 C5' U A 330 OK OK 1744 1761 1762 1746 1775 C5' G A 331 OK OK 1774 1794 1795 1776 1809 C5' A A 332 OK OK 1808 1827 1828 1810 1842 C5' A A 333 OK OK 1841 1860 1861 1843 1875 C5' G A 334 OK OK 1874 1894 1895 1876 1909 C5' U A 335 OK OK 1908 1925 1926 1910 1939 C5' U A 336 OK OK 1938 1955 1956 1940 1969 C5' C A 337 OK OK 1968 1985 1986 1970 2000 C5' G A 338 OK OK 1999 2019 2020 2001 2034 C5' G A 339 OK OK 2033 2053 2054 2035 2068 C5' A A 340 OK OK 2067 2086 2087 2069 2101 C5' A A 341 OK OK 2100 2119 2120 2102 2134 C5' C A 342 OK OK 2133 2150 2151 2135 2165 C5' A A 343 OK OK 2164 2183 2184 2166 2198 C5' C A 344 OK OK 2197 2214 2215 2199 2229 C5' C A 345 OK OK 2228 2245 2246 2230 2260 C5' C A 346 OK OK 2259 2276 2277 2261 2291 C5' G A 347 OK OK 2290 2310 2311 2292 2325 C5' G A 348 OK OK 2324 2344 2345 2326 2359 C5' C A 349 OK OK 2358 2375 2376 2360 2390 C5' C A 350 OK OK 2389 2406 2407 2391 2421 C5' G A 351 OK OK 2420 2440 2441 2422 2455 C5' C A 352 OK OK 2454 2471 2472 2456 2486 C5' A A 353 OK OK 2485 2504 2505 2487 2519 C5' A A 354 OK OK 2518 2537 2538 2520 2552 C5' C A 355 OK OK 2551 2568 2569 2553 2583 C5' C A 356 OK OK 2582 2599 2600 2584 2614 C5' C A 357 OK OK 2613 2630 2631 2615 2645 C5' U A 358 OK OK 2644 2661 2662 2646 2675 C5' G A 359 OK OK 2674 2694 2695 2676 2709 C5' G A 360 OK OK 2708 2728 2729 2710 2743 C5' G A 361 OK OK 2742 2762 2763 2744 2777 C5' A A 362 OK OK 2776 2795 2796 2778 2810 C5' G A 363 OK OK 2809 2829 2830 2811 2844 C5' A A 364 OK OK 2843 2862 2863 2845 2877 C5' G A 365 OK OK 2876 2896 2897 2878 2911 C5' G A 366 OK OK 2910 2930 2931 2912 2945 C5' U A 367 OK OK 2944 2961 2962 2946 2975 C5' C A 368 OK OK 2974 2991 2992 2976 3006 C5' C A 369 OK OK 3005 3022 3023 3007 3037 C5' C A 370 OK OK 3036 3053 3054 3038 3068 C5' A A 371 OK OK 3067 3086 3087 3069 3101 C5' G A 372 OK OK 3100 3120 3121 3102 3135 C5' G A 373 OK OK 3134 3154 3155 3136 3169 C5' G A 374 OK OK 3168 3188 3189 3170 3203 C5' U A 375 OK OK 3202 3219 3220 3204 3233 C5' U A 376 OK OK 3232 3249 3250 3234 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P G A 276 distorted distorted 2 3 4 35 P G A 277 distorted distorted 9 36 37 38 69 P C A 278 distorted distorted 43 70 71 72 100 P G A 279 distorted distorted 77 101 102 103 134 P G A 280 distorted distorted 108 135 136 137 168 P U A 281 distorted distorted 142 169 170 171 198 P A A 282 distorted distorted 176 199 200 201 231 P C A 283 distorted distorted 206 232 233 234 262 P U A 284 distorted distorted 239 263 264 265 292 P A A 285 distorted distorted 270 293 294 295 325 P G A 286 distorted distorted 300 326 327 328 359 P U A 287 distorted distorted 333 360 361 362 389 P U A 288 distorted distorted 367 390 391 392 419 P G A 289 distorted distorted 397 420 421 422 453 P A A 290 distorted distorted 427 454 455 456 486 P G A 291 distorted distorted 461 487 488 489 520 P A A 292 distorted distorted 494 521 522 523 553 P A A 293 distorted distorted 528 554 555 556 586 P A A 294 distorted distorted 561 587 588 589 619 P C A 295 distorted distorted 594 620 621 622 650 P U A 296 distorted distorted 627 651 652 653 680 P A A 297 distorted distorted 658 681 682 683 713 P G A 298 distorted distorted 688 714 715 716 747 P C A 299 distorted distorted 721 748 749 750 778 P U A 300 distorted distorted 755 779 780 781 808 P C A 301 distorted distorted 786 809 810 811 839 P U A 302 distorted distorted 816 840 841 842 869 P G A 303 distorted distorted 847 870 871 872 903 P U A 304 distorted distorted 877 904 905 906 933 P A A 305 distorted distorted 911 934 935 936 966 P U A 306 distorted distorted 941 967 968 969 996 P C A 307 distorted distorted 974 997 998 999 1027 P U A 308 distorted distorted 1004 1028 1029 1030 1057 P G A 309 distorted distorted 1035 1058 1059 1060 1091 P G A 310 distorted distorted 1065 1092 1093 1094 1125 P C A 311 distorted distorted 1099 1126 1127 1128 1156 P G A 312 distorted distorted 1133 1157 1158 1159 1190 P G A 313 distorted distorted 1164 1191 1192 1193 1224 P A A 314 distorted distorted 1198 1225 1226 1227 1257 P C A 315 distorted distorted 1232 1258 1259 1260 1288 P C A 316 distorted distorted 1265 1289 1290 1291 1319 P C A 317 distorted distorted 1296 1320 1321 1322 1350 P G A 318 distorted distorted 1327 1351 1352 1353 1384 P U A 319 distorted distorted 1358 1385 1386 1387 1414 P G A 320 distorted distorted 1392 1415 1416 1417 1448 P G A 321 distorted distorted 1422 1449 1450 1451 1482 P U A 322 distorted distorted 1456 1483 1484 1485 1512 P G A 323 distorted distorted 1490 1513 1514 1515 1546 P G A 324 distorted distorted 1520 1547 1548 1549 1580 P A A 325 distorted distorted 1554 1581 1582 1583 1613 P A A 326 distorted distorted 1588 1614 1615 1616 1646 P C A 327 distorted distorted 1621 1647 1648 1649 1677 P U A 328 distorted distorted 1654 1678 1679 1680 1707 P G A 329 distorted distorted 1685 1708 1709 1710 1741 P U A 330 distorted distorted 1715 1742 1743 1744 1771 P G A 331 distorted distorted 1749 1772 1773 1774 1805 P A A 332 distorted distorted 1779 1806 1807 1808 1838 P A A 333 distorted distorted 1813 1839 1840 1841 1871 P G A 334 distorted distorted 1846 1872 1873 1874 1905 P U A 335 distorted distorted 1879 1906 1907 1908 1935 P U A 336 distorted distorted 1913 1936 1937 1938 1965 P C A 337 distorted distorted 1943 1966 1967 1968 1996 P G A 338 distorted distorted 1973 1997 1998 1999 2030 P G A 339 distorted distorted 2004 2031 2032 2033 2064 P A A 340 distorted distorted 2038 2065 2066 2067 2097 P A A 341 distorted distorted 2072 2098 2099 2100 2130 P C A 342 distorted distorted 2105 2131 2132 2133 2161 P A A 343 distorted distorted 2138 2162 2163 2164 2194 P C A 344 distorted distorted 2169 2195 2196 2197 2225 P C A 345 distorted distorted 2202 2226 2227 2228 2256 P C A 346 distorted distorted 2233 2257 2258 2259 2287 P G A 347 distorted distorted 2264 2288 2289 2290 2321 P G A 348 distorted distorted 2295 2322 2323 2324 2355 P C A 349 distorted distorted 2329 2356 2357 2358 2386 P C A 350 distorted distorted 2363 2387 2388 2389 2417 P G A 351 distorted distorted 2394 2418 2419 2420 2451 P C A 352 distorted distorted 2425 2452 2453 2454 2482 P A A 353 distorted distorted 2459 2483 2484 2485 2515 P A A 354 distorted distorted 2490 2516 2517 2518 2548 P C A 355 distorted distorted 2523 2549 2550 2551 2579 P C A 356 distorted distorted 2556 2580 2581 2582 2610 P C A 357 distorted distorted 2587 2611 2612 2613 2641 P U A 358 distorted distorted 2618 2642 2643 2644 2671 P G A 359 distorted distorted 2649 2672 2673 2674 2705 P G A 360 distorted distorted 2679 2706 2707 2708 2739 P G A 361 distorted distorted 2713 2740 2741 2742 2773 P A A 362 distorted distorted 2747 2774 2775 2776 2806 P G A 363 distorted distorted 2781 2807 2808 2809 2840 P A A 364 distorted distorted 2814 2841 2842 2843 2873 P G A 365 distorted distorted 2848 2874 2875 2876 2907 P G A 366 distorted distorted 2881 2908 2909 2910 2941 P U A 367 distorted distorted 2915 2942 2943 2944 2971 P C A 368 distorted distorted 2949 2972 2973 2974 3002 P C A 369 distorted distorted 2979 3003 3004 3005 3033 P C A 370 distorted distorted 3010 3034 3035 3036 3064 P A A 371 distorted distorted 3041 3065 3066 3067 3097 P G A 372 distorted distorted 3072 3098 3099 3100 3131 P G A 373 distorted distorted 3105 3132 3133 3134 3165 P G A 374 distorted distorted 3139 3166 3167 3168 3199 P U A 375 distorted distorted 3173 3200 3201 3202 3229 P U A 376 distorted distorted 3207 3230 3231 3232 ---------------------------------------------------------------------------------