ID code: '1RRN' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' G A 1 beta 7 13 10 35 C1' C A 2 beta 30 36 33 55 C1' C A 3 beta 50 56 53 75 C1' U A 4 beta 70 76 73 95 C1' A A 5 beta 90 96 93 117 C1' C A 6 beta 112 118 115 137 C1' G A 7 beta 132 138 135 160 C1' G A 8 beta 155 161 158 183 C1' C A 9 beta 178 184 181 203 C1' C A 10 beta 198 204 201 223 C1' A A 11 beta 218 224 221 245 C1' C A 12 beta 240 246 243 265 C1' A A 13 beta 260 266 263 287 C1' C A 14 beta 282 288 285 307 C1' C A 15 beta 302 308 305 327 C1' A A 16 beta 322 328 325 349 C1' C A 17 beta 344 350 347 369 C1' C A 18 beta 364 370 367 389 C1' C A 19 beta 384 390 387 409 C1' U A 20 beta 404 410 407 429 C1' G A 21 beta 424 430 427 452 C1' A A 22 beta 447 453 450 474 C1' A A 23 beta 469 475 472 496 C1' A A 24 beta 491 497 494 518 C1' G A 25 beta 513 519 516 541 C1' U A 26 beta 536 542 539 561 C1' G A 27 beta 556 562 559 584 C1' C A 28 beta 579 585 582 604 C1' C A 29 beta 599 605 602 624 C1' U A 30 beta 619 625 622 644 C1' G A 31 beta 639 645 642 667 C1' A A 32 beta 662 668 665 689 C1' U A 33 beta 684 690 687 709 C1' C A 34 beta 704 710 707 729 C1' U A 35 beta 724 730 727 749 C1' C A 36 beta 744 750 747 769 C1' G A 37 beta 764 770 767 792 C1' U A 38 beta 787 793 790 812 C1' C A 39 beta 807 813 810 832 C1' U A 40 beta 827 833 830 852 C1' G A 41 beta 847 853 850 875 C1' A A 42 beta 870 876 873 897 C1' U A 43 beta 892 898 895 917 C1' C A 44 beta 912 918 915 937 C1' U A 45 beta 932 938 935 957 C1' C A 46 beta 952 958 955 977 C1' A A 47 beta 972 978 975 999 C1' G A 48 beta 994 1000 997 1022 C1' A A 49 beta 1017 1023 1020 1044 C1' A A 50 beta 1039 1045 1042 1066 C1' G A 51 beta 1061 1067 1064 1089 C1' C A 52 beta 1084 1090 1087 1109 C1' G A 53 beta 1104 1110 1107 1132 C1' A A 54 beta 1127 1133 1130 1154 C1' U A 55 beta 1149 1155 1152 1174 C1' A A 56 beta 1169 1175 1172 1196 C1' C A 57 beta 1191 1197 1194 1216 C1' A A 58 beta 1211 1217 1214 1238 C1' G A 59 beta 1233 1239 1236 1261 C1' G A 60 beta 1256 1262 1259 1284 C1' G A 61 beta 1279 1285 1282 1307 C1' U A 62 beta 1302 1308 1305 1327 C1' C A 63 beta 1322 1328 1325 1347 C1' G A 64 beta 1342 1348 1345 1370 C1' G A 65 beta 1365 1371 1368 1393 C1' G A 66 beta 1388 1394 1391 1416 C1' C A 67 beta 1411 1417 1414 1436 C1' C A 68 beta 1431 1437 1434 1456 C1' U A 69 beta 1451 1457 1454 1476 C1' G A 70 beta 1471 1477 1474 1499 C1' G A 71 beta 1494 1500 1497 1522 C1' U A 72 beta 1517 1523 1520 1542 C1' U A 73 beta 1537 1543 1540 1562 C1' A A 74 beta 1557 1563 1560 1584 C1' G A 75 beta 1579 1585 1582 1607 C1' U A 76 beta 1602 1608 1605 1627 C1' A A 77 beta 1622 1628 1625 1649 C1' C A 78 beta 1644 1650 1647 1669 C1' C A 79 beta 1664 1670 1667 1689 C1' U A 80 beta 1684 1690 1687 1709 C1' G A 81 beta 1704 1710 1707 1732 C1' G A 82 beta 1727 1733 1730 1755 C1' A A 83 beta 1750 1756 1753 1777 C1' U A 84 beta 1772 1778 1775 1797 C1' G A 85 beta 1792 1798 1795 1820 C1' G A 86 beta 1815 1821 1818 1843 C1' G A 87 beta 1838 1844 1841 1866 C1' A A 88 beta 1861 1867 1864 1888 C1' G A 89 beta 1883 1889 1886 1911 C1' A A 90 beta 1906 1912 1909 1933 C1' C A 91 beta 1928 1934 1931 1953 C1' C A 92 beta 1948 1954 1951 1973 C1' G A 93 beta 1968 1974 1971 1996 C1' C A 94 beta 1991 1997 1994 2016 C1' C A 95 beta 2011 2017 2014 2036 C1' U A 96 beta 2031 2037 2034 2056 C1' G A 97 beta 2051 2057 2054 2079 C1' G A 98 beta 2074 2080 2077 2102 C1' G A 99 beta 2097 2103 2100 2125 C1' A A 100 beta 2120 2126 2123 2147 C1' A A 101 beta 2142 2148 2145 2169 C1' U A 102 beta 2164 2170 2167 2189 C1' A A 103 beta 2184 2190 2187 2211 C1' C A 104 beta 2206 2212 2209 2231 C1' C A 105 beta 2226 2232 2229 2251 C1' A A 106 beta 2246 2252 2249 2273 C1' G A 107 beta 2268 2274 2271 2296 C1' G A 108 beta 2291 2297 2294 2319 C1' U A 109 beta 2314 2320 2317 2339 C1' G A 110 beta 2334 2340 2337 2362 C1' U A 111 beta 2357 2363 2360 2382 C1' C A 112 beta 2377 2383 2380 2402 C1' G A 113 beta 2397 2403 2400 2425 C1' U A 114 beta 2420 2426 2423 2445 C1' A A 115 beta 2440 2446 2443 2467 C1' G A 116 beta 2462 2468 2465 2490 C1' G A 117 beta 2485 2491 2488 2513 C1' C A 118 beta 2508 2514 2511 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' G A 1 OK 12 8 11 33 C2' C A 2 OK 35 31 34 53 C2' C A 3 OK 55 51 54 73 C2' U A 4 OK 75 71 74 93 C2' A A 5 OK 95 91 94 115 C2' C A 6 OK 117 113 116 135 C2' G A 7 OK 137 133 136 158 C2' G A 8 OK 160 156 159 181 C2' C A 9 OK 183 179 182 201 C2' C A 10 OK 203 199 202 221 C2' A A 11 OK 223 219 222 243 C2' C A 12 OK 245 241 244 263 C2' A A 13 OK 265 261 264 285 C2' C A 14 OK 287 283 286 305 C2' C A 15 OK 307 303 306 325 C2' A A 16 OK 327 323 326 347 C2' C A 17 OK 349 345 348 367 C2' C A 18 OK 369 365 368 387 C2' C A 19 OK 389 385 388 407 C2' U A 20 OK 409 405 408 427 C2' G A 21 OK 429 425 428 450 C2' A A 22 OK 452 448 451 472 C2' A A 23 OK 474 470 473 494 C2' A A 24 OK 496 492 495 516 C2' G A 25 OK 518 514 517 539 C2' U A 26 OK 541 537 540 559 C2' G A 27 OK 561 557 560 582 C2' C A 28 OK 584 580 583 602 C2' C A 29 OK 604 600 603 622 C2' U A 30 OK 624 620 623 642 C2' G A 31 OK 644 640 643 665 C2' A A 32 OK 667 663 666 687 C2' U A 33 OK 689 685 688 707 C2' C A 34 OK 709 705 708 727 C2' U A 35 OK 729 725 728 747 C2' C A 36 OK 749 745 748 767 C2' G A 37 OK 769 765 768 790 C2' U A 38 OK 792 788 791 810 C2' C A 39 OK 812 808 811 830 C2' U A 40 OK 832 828 831 850 C2' G A 41 OK 852 848 851 873 C2' A A 42 OK 875 871 874 895 C2' U A 43 OK 897 893 896 915 C2' C A 44 OK 917 913 916 935 C2' U A 45 OK 937 933 936 955 C2' C A 46 OK 957 953 956 975 C2' A A 47 OK 977 973 976 997 C2' G A 48 OK 999 995 998 1020 C2' A A 49 OK 1022 1018 1021 1042 C2' A A 50 OK 1044 1040 1043 1064 C2' G A 51 OK 1066 1062 1065 1087 C2' C A 52 OK 1089 1085 1088 1107 C2' G A 53 OK 1109 1105 1108 1130 C2' A A 54 OK 1132 1128 1131 1152 C2' U A 55 OK 1154 1150 1153 1172 C2' A A 56 OK 1174 1170 1173 1194 C2' C A 57 OK 1196 1192 1195 1214 C2' A A 58 OK 1216 1212 1215 1236 C2' G A 59 OK 1238 1234 1237 1259 C2' G A 60 OK 1261 1257 1260 1282 C2' G A 61 OK 1284 1280 1283 1305 C2' U A 62 OK 1307 1303 1306 1325 C2' C A 63 OK 1327 1323 1326 1345 C2' G A 64 OK 1347 1343 1346 1368 C2' G A 65 OK 1370 1366 1369 1391 C2' G A 66 OK 1393 1389 1392 1414 C2' C A 67 OK 1416 1412 1415 1434 C2' C A 68 OK 1436 1432 1435 1454 C2' U A 69 OK 1456 1452 1455 1474 C2' G A 70 OK 1476 1472 1475 1497 C2' G A 71 OK 1499 1495 1498 1520 C2' U A 72 OK 1522 1518 1521 1540 C2' U A 73 OK 1542 1538 1541 1560 C2' A A 74 OK 1562 1558 1561 1582 C2' G A 75 OK 1584 1580 1583 1605 C2' U A 76 OK 1607 1603 1606 1625 C2' A A 77 OK 1627 1623 1626 1647 C2' C A 78 OK 1649 1645 1648 1667 C2' C A 79 OK 1669 1665 1668 1687 C2' U A 80 OK 1689 1685 1688 1707 C2' G A 81 OK 1709 1705 1708 1730 C2' G A 82 OK 1732 1728 1731 1753 C2' A A 83 OK 1755 1751 1754 1775 C2' U A 84 OK 1777 1773 1776 1795 C2' G A 85 OK 1797 1793 1796 1818 C2' G A 86 OK 1820 1816 1819 1841 C2' G A 87 OK 1843 1839 1842 1864 C2' A A 88 OK 1866 1862 1865 1886 C2' G A 89 OK 1888 1884 1887 1909 C2' A A 90 OK 1911 1907 1910 1931 C2' C A 91 OK 1933 1929 1932 1951 C2' C A 92 OK 1953 1949 1952 1971 C2' G A 93 OK 1973 1969 1972 1994 C2' C A 94 OK 1996 1992 1995 2014 C2' C A 95 OK 2016 2012 2015 2034 C2' U A 96 OK 2036 2032 2035 2054 C2' G A 97 OK 2056 2052 2055 2077 C2' G A 98 OK 2079 2075 2078 2100 C2' G A 99 OK 2102 2098 2101 2123 C2' A A 100 OK 2125 2121 2124 2145 C2' A A 101 OK 2147 2143 2146 2167 C2' U A 102 OK 2169 2165 2168 2187 C2' A A 103 OK 2189 2185 2188 2209 C2' C A 104 OK 2211 2207 2210 2229 C2' C A 105 OK 2231 2227 2230 2249 C2' A A 106 OK 2251 2247 2250 2271 C2' G A 107 OK 2273 2269 2272 2294 C2' G A 108 OK 2296 2292 2295 2317 C2' U A 109 OK 2319 2315 2318 2337 C2' G A 110 OK 2339 2335 2338 2360 C2' U A 111 OK 2362 2358 2361 2380 C2' C A 112 OK 2382 2378 2381 2400 C2' G A 113 OK 2402 2398 2401 2423 C2' U A 114 OK 2425 2421 2424 2443 C2' A A 115 OK 2445 2441 2444 2465 C2' G A 116 OK 2467 2463 2466 2488 C2' G A 117 OK 2490 2486 2489 2511 C2' C A 118 OK 2513 2509 2512 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' G A 1 OK 6 9 10 31 C3' C A 2 OK 29 32 33 51 C3' C A 3 OK 49 52 53 71 C3' U A 4 OK 69 72 73 91 C3' A A 5 OK 89 92 93 113 C3' C A 6 OK 111 114 115 133 C3' G A 7 OK 131 134 135 156 C3' G A 8 OK 154 157 158 179 C3' C A 9 OK 177 180 181 199 C3' C A 10 OK 197 200 201 219 C3' A A 11 OK 217 220 221 241 C3' C A 12 OK 239 242 243 261 C3' A A 13 OK 259 262 263 283 C3' C A 14 OK 281 284 285 303 C3' C A 15 OK 301 304 305 323 C3' A A 16 OK 321 324 325 345 C3' C A 17 OK 343 346 347 365 C3' C A 18 OK 363 366 367 385 C3' C A 19 OK 383 386 387 405 C3' U A 20 OK 403 406 407 425 C3' G A 21 OK 423 426 427 448 C3' A A 22 OK 446 449 450 470 C3' A A 23 OK 468 471 472 492 C3' A A 24 OK 490 493 494 514 C3' G A 25 OK 512 515 516 537 C3' U A 26 OK 535 538 539 557 C3' G A 27 OK 555 558 559 580 C3' C A 28 OK 578 581 582 600 C3' C A 29 OK 598 601 602 620 C3' U A 30 OK 618 621 622 640 C3' G A 31 OK 638 641 642 663 C3' A A 32 OK 661 664 665 685 C3' U A 33 OK 683 686 687 705 C3' C A 34 OK 703 706 707 725 C3' U A 35 OK 723 726 727 745 C3' C A 36 OK 743 746 747 765 C3' G A 37 OK 763 766 767 788 C3' U A 38 OK 786 789 790 808 C3' C A 39 OK 806 809 810 828 C3' U A 40 OK 826 829 830 848 C3' G A 41 OK 846 849 850 871 C3' A A 42 OK 869 872 873 893 C3' U A 43 OK 891 894 895 913 C3' C A 44 OK 911 914 915 933 C3' U A 45 OK 931 934 935 953 C3' C A 46 OK 951 954 955 973 C3' A A 47 OK 971 974 975 995 C3' G A 48 OK 993 996 997 1018 C3' A A 49 OK 1016 1019 1020 1040 C3' A A 50 OK 1038 1041 1042 1062 C3' G A 51 OK 1060 1063 1064 1085 C3' C A 52 OK 1083 1086 1087 1105 C3' G A 53 OK 1103 1106 1107 1128 C3' A A 54 OK 1126 1129 1130 1150 C3' U A 55 OK 1148 1151 1152 1170 C3' A A 56 OK 1168 1171 1172 1192 C3' C A 57 OK 1190 1193 1194 1212 C3' A A 58 OK 1210 1213 1214 1234 C3' G A 59 OK 1232 1235 1236 1257 C3' G A 60 OK 1255 1258 1259 1280 C3' G A 61 OK 1278 1281 1282 1303 C3' U A 62 OK 1301 1304 1305 1323 C3' C A 63 OK 1321 1324 1325 1343 C3' G A 64 OK 1341 1344 1345 1366 C3' G A 65 OK 1364 1367 1368 1389 C3' G A 66 OK 1387 1390 1391 1412 C3' C A 67 OK 1410 1413 1414 1432 C3' C A 68 OK 1430 1433 1434 1452 C3' U A 69 OK 1450 1453 1454 1472 C3' G A 70 OK 1470 1473 1474 1495 C3' G A 71 OK 1493 1496 1497 1518 C3' U A 72 OK 1516 1519 1520 1538 C3' U A 73 OK 1536 1539 1540 1558 C3' A A 74 OK 1556 1559 1560 1580 C3' G A 75 OK 1578 1581 1582 1603 C3' U A 76 OK 1601 1604 1605 1623 C3' A A 77 OK 1621 1624 1625 1645 C3' C A 78 OK 1643 1646 1647 1665 C3' C A 79 OK 1663 1666 1667 1685 C3' U A 80 OK 1683 1686 1687 1705 C3' G A 81 OK 1703 1706 1707 1728 C3' G A 82 OK 1726 1729 1730 1751 C3' A A 83 OK 1749 1752 1753 1773 C3' U A 84 OK 1771 1774 1775 1793 C3' G A 85 OK 1791 1794 1795 1816 C3' G A 86 OK 1814 1817 1818 1839 C3' G A 87 OK 1837 1840 1841 1862 C3' A A 88 OK 1860 1863 1864 1884 C3' G A 89 OK 1882 1885 1886 1907 C3' A A 90 OK 1905 1908 1909 1929 C3' C A 91 OK 1927 1930 1931 1949 C3' C A 92 OK 1947 1950 1951 1969 C3' G A 93 OK 1967 1970 1971 1992 C3' C A 94 OK 1990 1993 1994 2012 C3' C A 95 OK 2010 2013 2014 2032 C3' U A 96 OK 2030 2033 2034 2052 C3' G A 97 OK 2050 2053 2054 2075 C3' G A 98 OK 2073 2076 2077 2098 C3' G A 99 OK 2096 2099 2100 2121 C3' A A 100 OK 2119 2122 2123 2143 C3' A A 101 OK 2141 2144 2145 2165 C3' U A 102 OK 2163 2166 2167 2185 C3' A A 103 OK 2183 2186 2187 2207 C3' C A 104 OK 2205 2208 2209 2227 C3' C A 105 OK 2225 2228 2229 2247 C3' A A 106 OK 2245 2248 2249 2269 C3' G A 107 OK 2267 2270 2271 2292 C3' G A 108 OK 2290 2293 2294 2315 C3' U A 109 OK 2313 2316 2317 2335 C3' G A 110 OK 2333 2336 2337 2358 C3' U A 111 OK 2356 2359 2360 2378 C3' C A 112 OK 2376 2379 2380 2398 C3' G A 113 OK 2396 2399 2400 2421 C3' U A 114 OK 2419 2422 2423 2441 C3' A A 115 OK 2439 2442 2443 2463 C3' G A 116 OK 2461 2464 2465 2486 C3' G A 117 OK 2484 2487 2488 2509 C3' C A 118 OK 2507 2510 2511 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' G A 1 OK 8 5 7 29 C4' C A 2 OK 31 28 30 49 C4' C A 3 OK 51 48 50 69 C4' U A 4 OK 71 68 70 89 C4' A A 5 OK 91 88 90 111 C4' C A 6 OK 113 110 112 131 C4' G A 7 OK 133 130 132 154 C4' G A 8 OK 156 153 155 177 C4' C A 9 OK 179 176 178 197 C4' C A 10 OK 199 196 198 217 C4' A A 11 OK 219 216 218 239 C4' C A 12 OK 241 238 240 259 C4' A A 13 OK 261 258 260 281 C4' C A 14 OK 283 280 282 301 C4' C A 15 OK 303 300 302 321 C4' A A 16 OK 323 320 322 343 C4' C A 17 OK 345 342 344 363 C4' C A 18 OK 365 362 364 383 C4' C A 19 OK 385 382 384 403 C4' U A 20 OK 405 402 404 423 C4' G A 21 OK 425 422 424 446 C4' A A 22 OK 448 445 447 468 C4' A A 23 OK 470 467 469 490 C4' A A 24 OK 492 489 491 512 C4' G A 25 OK 514 511 513 535 C4' U A 26 OK 537 534 536 555 C4' G A 27 OK 557 554 556 578 C4' C A 28 OK 580 577 579 598 C4' C A 29 OK 600 597 599 618 C4' U A 30 OK 620 617 619 638 C4' G A 31 OK 640 637 639 661 C4' A A 32 OK 663 660 662 683 C4' U A 33 OK 685 682 684 703 C4' C A 34 OK 705 702 704 723 C4' U A 35 OK 725 722 724 743 C4' C A 36 OK 745 742 744 763 C4' G A 37 OK 765 762 764 786 C4' U A 38 OK 788 785 787 806 C4' C A 39 OK 808 805 807 826 C4' U A 40 OK 828 825 827 846 C4' G A 41 OK 848 845 847 869 C4' A A 42 OK 871 868 870 891 C4' U A 43 OK 893 890 892 911 C4' C A 44 OK 913 910 912 931 C4' U A 45 OK 933 930 932 951 C4' C A 46 OK 953 950 952 971 C4' A A 47 OK 973 970 972 993 C4' G A 48 OK 995 992 994 1016 C4' A A 49 OK 1018 1015 1017 1038 C4' A A 50 OK 1040 1037 1039 1060 C4' G A 51 OK 1062 1059 1061 1083 C4' C A 52 OK 1085 1082 1084 1103 C4' G A 53 OK 1105 1102 1104 1126 C4' A A 54 OK 1128 1125 1127 1148 C4' U A 55 OK 1150 1147 1149 1168 C4' A A 56 OK 1170 1167 1169 1190 C4' C A 57 OK 1192 1189 1191 1210 C4' A A 58 OK 1212 1209 1211 1232 C4' G A 59 OK 1234 1231 1233 1255 C4' G A 60 OK 1257 1254 1256 1278 C4' G A 61 OK 1280 1277 1279 1301 C4' U A 62 OK 1303 1300 1302 1321 C4' C A 63 OK 1323 1320 1322 1341 C4' G A 64 OK 1343 1340 1342 1364 C4' G A 65 OK 1366 1363 1365 1387 C4' G A 66 OK 1389 1386 1388 1410 C4' C A 67 OK 1412 1409 1411 1430 C4' C A 68 OK 1432 1429 1431 1450 C4' U A 69 OK 1452 1449 1451 1470 C4' G A 70 OK 1472 1469 1471 1493 C4' G A 71 OK 1495 1492 1494 1516 C4' U A 72 OK 1518 1515 1517 1536 C4' U A 73 OK 1538 1535 1537 1556 C4' A A 74 OK 1558 1555 1557 1578 C4' G A 75 OK 1580 1577 1579 1601 C4' U A 76 OK 1603 1600 1602 1621 C4' A A 77 OK 1623 1620 1622 1643 C4' C A 78 OK 1645 1642 1644 1663 C4' C A 79 OK 1665 1662 1664 1683 C4' U A 80 OK 1685 1682 1684 1703 C4' G A 81 OK 1705 1702 1704 1726 C4' G A 82 OK 1728 1725 1727 1749 C4' A A 83 OK 1751 1748 1750 1771 C4' U A 84 OK 1773 1770 1772 1791 C4' G A 85 OK 1793 1790 1792 1814 C4' G A 86 OK 1816 1813 1815 1837 C4' G A 87 OK 1839 1836 1838 1860 C4' A A 88 OK 1862 1859 1861 1882 C4' G A 89 OK 1884 1881 1883 1905 C4' A A 90 OK 1907 1904 1906 1927 C4' C A 91 OK 1929 1926 1928 1947 C4' C A 92 OK 1949 1946 1948 1967 C4' G A 93 OK 1969 1966 1968 1990 C4' C A 94 OK 1992 1989 1991 2010 C4' C A 95 OK 2012 2009 2011 2030 C4' U A 96 OK 2032 2029 2031 2050 C4' G A 97 OK 2052 2049 2051 2073 C4' G A 98 OK 2075 2072 2074 2096 C4' G A 99 OK 2098 2095 2097 2119 C4' A A 100 OK 2121 2118 2120 2141 C4' A A 101 OK 2143 2140 2142 2163 C4' U A 102 OK 2165 2162 2164 2183 C4' A A 103 OK 2185 2182 2184 2205 C4' C A 104 OK 2207 2204 2206 2225 C4' C A 105 OK 2227 2224 2226 2245 C4' A A 106 OK 2247 2244 2246 2267 C4' G A 107 OK 2269 2266 2268 2290 C4' G A 108 OK 2292 2289 2291 2313 C4' U A 109 OK 2315 2312 2314 2333 C4' G A 110 OK 2335 2332 2334 2356 C4' U A 111 OK 2358 2355 2357 2376 C4' C A 112 OK 2378 2375 2377 2396 C4' G A 113 OK 2398 2395 2397 2419 C4' U A 114 OK 2421 2418 2420 2439 C4' A A 115 OK 2441 2438 2440 2461 C4' G A 116 OK 2463 2460 2462 2484 C4' G A 117 OK 2486 2483 2485 2507 C4' C A 118 OK 2509 2506 2508 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' G A 1 4 6 28 C5' C A 2 27 29 48 C5' C A 3 47 49 68 C5' U A 4 67 69 88 C5' A A 5 87 89 110 C5' C A 6 109 111 130 C5' G A 7 129 131 153 C5' G A 8 152 154 176 C5' C A 9 175 177 196 C5' C A 10 195 197 216 C5' A A 11 215 217 238 C5' C A 12 237 239 258 C5' A A 13 257 259 280 C5' C A 14 279 281 300 C5' C A 15 299 301 320 C5' A A 16 319 321 342 C5' C A 17 341 343 362 C5' C A 18 361 363 382 C5' C A 19 381 383 402 C5' U A 20 401 403 422 C5' G A 21 421 423 445 C5' A A 22 444 446 467 C5' A A 23 466 468 489 C5' A A 24 488 490 511 C5' G A 25 510 512 534 C5' U A 26 533 535 554 C5' G A 27 553 555 577 C5' C A 28 576 578 597 C5' C A 29 596 598 617 C5' U A 30 616 618 637 C5' G A 31 636 638 660 C5' A A 32 659 661 682 C5' U A 33 681 683 702 C5' C A 34 701 703 722 C5' U A 35 721 723 742 C5' C A 36 741 743 762 C5' G A 37 761 763 785 C5' U A 38 784 786 805 C5' C A 39 804 806 825 C5' U A 40 824 826 845 C5' G A 41 844 846 868 C5' A A 42 867 869 890 C5' U A 43 889 891 910 C5' C A 44 909 911 930 C5' U A 45 929 931 950 C5' C A 46 949 951 970 C5' A A 47 969 971 992 C5' G A 48 991 993 1015 C5' A A 49 1014 1016 1037 C5' A A 50 1036 1038 1059 C5' G A 51 1058 1060 1082 C5' C A 52 1081 1083 1102 C5' G A 53 1101 1103 1125 C5' A A 54 1124 1126 1147 C5' U A 55 1146 1148 1167 C5' A A 56 1166 1168 1189 C5' C A 57 1188 1190 1209 C5' A A 58 1208 1210 1231 C5' G A 59 1230 1232 1254 C5' G A 60 1253 1255 1277 C5' G A 61 1276 1278 1300 C5' U A 62 1299 1301 1320 C5' C A 63 1319 1321 1340 C5' G A 64 1339 1341 1363 C5' G A 65 1362 1364 1386 C5' G A 66 1385 1387 1409 C5' C A 67 1408 1410 1429 C5' C A 68 1428 1430 1449 C5' U A 69 1448 1450 1469 C5' G A 70 1468 1470 1492 C5' G A 71 1491 1493 1515 C5' U A 72 1514 1516 1535 C5' U A 73 1534 1536 1555 C5' A A 74 1554 1556 1577 C5' G A 75 1576 1578 1600 C5' U A 76 1599 1601 1620 C5' A A 77 1619 1621 1642 C5' C A 78 1641 1643 1662 C5' C A 79 1661 1663 1682 C5' U A 80 1681 1683 1702 C5' G A 81 1701 1703 1725 C5' G A 82 1724 1726 1748 C5' A A 83 1747 1749 1770 C5' U A 84 1769 1771 1790 C5' G A 85 1789 1791 1813 C5' G A 86 1812 1814 1836 C5' G A 87 1835 1837 1859 C5' A A 88 1858 1860 1881 C5' G A 89 1880 1882 1904 C5' A A 90 1903 1905 1926 C5' C A 91 1925 1927 1946 C5' C A 92 1945 1947 1966 C5' G A 93 1965 1967 1989 C5' C A 94 1988 1990 2009 C5' C A 95 2008 2010 2029 C5' U A 96 2028 2030 2049 C5' G A 97 2048 2050 2072 C5' G A 98 2071 2073 2095 C5' G A 99 2094 2096 2118 C5' A A 100 2117 2119 2140 C5' A A 101 2139 2141 2162 C5' U A 102 2161 2163 2182 C5' A A 103 2181 2183 2204 C5' C A 104 2203 2205 2224 C5' C A 105 2223 2225 2244 C5' A A 106 2243 2245 2266 C5' G A 107 2265 2267 2289 C5' G A 108 2288 2290 2312 C5' U A 109 2311 2313 2332 C5' G A 110 2331 2333 2355 C5' U A 111 2354 2356 2375 C5' C A 112 2374 2376 2395 C5' G A 113 2394 2396 2418 C5' U A 114 2417 2419 2438 C5' A A 115 2437 2439 2460 C5' G A 116 2459 2461 2483 C5' G A 117 2482 2484 2506 C5' C A 118 2505 2507 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P G A 1 OK OK 2 3 4 24 P C A 2 distorted distorted 9 25 26 27 44 P C A 3 distorted distorted 32 45 46 47 64 P U A 4 distorted distorted 52 65 66 67 84 P A A 5 distorted distorted 72 85 86 87 106 P C A 6 distorted distorted 92 107 108 109 126 P G A 7 distorted distorted 114 127 128 129 149 P G A 8 distorted distorted 134 150 151 152 172 P C A 9 distorted distorted 157 173 174 175 192 P C A 10 distorted distorted 180 193 194 195 212 P A A 11 distorted distorted 200 213 214 215 234 P C A 12 distorted distorted 220 235 236 237 254 P A A 13 distorted distorted 242 255 256 257 276 P C A 14 distorted distorted 262 277 278 279 296 P C A 15 distorted distorted 284 297 298 299 316 P A A 16 distorted distorted 304 317 318 319 338 P C A 17 distorted distorted 324 339 340 341 358 P C A 18 distorted distorted 346 359 360 361 378 P C A 19 distorted distorted 366 379 380 381 398 P U A 20 distorted distorted 386 399 400 401 418 P G A 21 distorted distorted 406 419 420 421 441 P A A 22 distorted distorted 426 442 443 444 463 P A A 23 distorted distorted 449 464 465 466 485 P A A 24 distorted distorted 471 486 487 488 507 P G A 25 distorted distorted 493 508 509 510 530 P U A 26 distorted distorted 515 531 532 533 550 P G A 27 distorted distorted 538 551 552 553 573 P C A 28 distorted distorted 558 574 575 576 593 P C A 29 distorted distorted 581 594 595 596 613 P U A 30 distorted distorted 601 614 615 616 633 P G A 31 distorted distorted 621 634 635 636 656 P A A 32 distorted distorted 641 657 658 659 678 P U A 33 distorted distorted 664 679 680 681 698 P C A 34 distorted distorted 686 699 700 701 718 P U A 35 distorted distorted 706 719 720 721 738 P C A 36 distorted distorted 726 739 740 741 758 P G A 37 distorted distorted 746 759 760 761 781 P U A 38 distorted distorted 766 782 783 784 801 P C A 39 distorted distorted 789 802 803 804 821 P U A 40 distorted distorted 809 822 823 824 841 P G A 41 distorted distorted 829 842 843 844 864 P A A 42 distorted distorted 849 865 866 867 886 P U A 43 distorted distorted 872 887 888 889 906 P C A 44 distorted distorted 894 907 908 909 926 P U A 45 distorted distorted 914 927 928 929 946 P C A 46 distorted distorted 934 947 948 949 966 P A A 47 distorted distorted 954 967 968 969 988 P G A 48 distorted distorted 974 989 990 991 1011 P A A 49 distorted distorted 996 1012 1013 1014 1033 P A A 50 distorted distorted 1019 1034 1035 1036 1055 P G A 51 distorted distorted 1041 1056 1057 1058 1078 P C A 52 distorted distorted 1063 1079 1080 1081 1098 P G A 53 distorted distorted 1086 1099 1100 1101 1121 P A A 54 distorted distorted 1106 1122 1123 1124 1143 P U A 55 distorted distorted 1129 1144 1145 1146 1163 P A A 56 distorted distorted 1151 1164 1165 1166 1185 P C A 57 distorted distorted 1171 1186 1187 1188 1205 P A A 58 distorted distorted 1193 1206 1207 1208 1227 P G A 59 distorted distorted 1213 1228 1229 1230 1250 P G A 60 distorted distorted 1235 1251 1252 1253 1273 P G A 61 distorted distorted 1258 1274 1275 1276 1296 P U A 62 distorted distorted 1281 1297 1298 1299 1316 P C A 63 distorted distorted 1304 1317 1318 1319 1336 P G A 64 distorted distorted 1324 1337 1338 1339 1359 P G A 65 distorted distorted 1344 1360 1361 1362 1382 P G A 66 distorted distorted 1367 1383 1384 1385 1405 P C A 67 distorted distorted 1390 1406 1407 1408 1425 P C A 68 distorted distorted 1413 1426 1427 1428 1445 P U A 69 distorted distorted 1433 1446 1447 1448 1465 P G A 70 distorted distorted 1453 1466 1467 1468 1488 P G A 71 distorted distorted 1473 1489 1490 1491 1511 P U A 72 distorted distorted 1496 1512 1513 1514 1531 P U A 73 distorted distorted 1519 1532 1533 1534 1551 P A A 74 distorted distorted 1539 1552 1553 1554 1573 P G A 75 distorted distorted 1559 1574 1575 1576 1596 P U A 76 distorted distorted 1581 1597 1598 1599 1616 P A A 77 distorted distorted 1604 1617 1618 1619 1638 P C A 78 distorted distorted 1624 1639 1640 1641 1658 P C A 79 distorted distorted 1646 1659 1660 1661 1678 P U A 80 distorted distorted 1666 1679 1680 1681 1698 P G A 81 distorted distorted 1686 1699 1700 1701 1721 P G A 82 distorted distorted 1706 1722 1723 1724 1744 P A A 83 distorted distorted 1729 1745 1746 1747 1766 P U A 84 distorted distorted 1752 1767 1768 1769 1786 P G A 85 distorted distorted 1774 1787 1788 1789 1809 P G A 86 distorted distorted 1794 1810 1811 1812 1832 P G A 87 distorted distorted 1817 1833 1834 1835 1855 P A A 88 distorted distorted 1840 1856 1857 1858 1877 P G A 89 distorted distorted 1863 1878 1879 1880 1900 P A A 90 distorted distorted 1885 1901 1902 1903 1922 P C A 91 distorted distorted 1908 1923 1924 1925 1942 P C A 92 distorted distorted 1930 1943 1944 1945 1962 P G A 93 distorted distorted 1950 1963 1964 1965 1985 P C A 94 distorted distorted 1970 1986 1987 1988 2005 P C A 95 distorted distorted 1993 2006 2007 2008 2025 P U A 96 distorted distorted 2013 2026 2027 2028 2045 P G A 97 distorted distorted 2033 2046 2047 2048 2068 P G A 98 distorted distorted 2053 2069 2070 2071 2091 P G A 99 distorted distorted 2076 2092 2093 2094 2114 P A A 100 distorted distorted 2099 2115 2116 2117 2136 P A A 101 distorted distorted 2122 2137 2138 2139 2158 P U A 102 distorted distorted 2144 2159 2160 2161 2178 P A A 103 distorted distorted 2166 2179 2180 2181 2200 P C A 104 distorted distorted 2186 2201 2202 2203 2220 P C A 105 distorted distorted 2208 2221 2222 2223 2240 P A A 106 distorted distorted 2228 2241 2242 2243 2262 P G A 107 distorted distorted 2248 2263 2264 2265 2285 P G A 108 distorted distorted 2270 2286 2287 2288 2308 P U A 109 distorted distorted 2293 2309 2310 2311 2328 P G A 110 distorted distorted 2316 2329 2330 2331 2351 P U A 111 distorted distorted 2336 2352 2353 2354 2371 P C A 112 distorted distorted 2359 2372 2373 2374 2391 P G A 113 distorted distorted 2379 2392 2393 2394 2414 P U A 114 distorted distorted 2399 2415 2416 2417 2434 P A A 115 distorted distorted 2422 2435 2436 2437 2456 P G A 116 distorted distorted 2442 2457 2458 2459 2479 P G A 117 distorted distorted 2464 2480 2481 2482 2502 P C A 118 distorted distorted 2487 2503 2504 2505 ---------------------------------------------------------------------------------