ID code: '1RD1' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G A 1 alpha beta 8 30 14 11 46 C1' C A 2 alpha beta 41 60 47 44 76 C1' G A 3 alpha beta 71 93 77 74 109 C1' G A 4 alpha beta 104 126 110 107 142 C1' A A 5 alpha beta 137 158 143 140 174 C1' U A 6 alpha beta 169 188 175 172 203 C1' U A 7 alpha beta 198 217 204 201 232 C1' U A 8 alpha beta 227 246 233 230 261 C1' A A 9 alpha beta 256 277 262 259 293 C1' 2MG A 10 alpha beta 288 311 294 291 329 C1' C A 11 alpha beta 324 343 330 327 359 C1' U A 12 alpha beta 354 373 360 357 388 C1' C A 13 alpha beta 383 402 389 386 418 C1' A A 14 alpha beta 413 434 419 416 450 C1' G A 15 alpha beta 445 467 451 448 481 C1' H2U A 16 alpha beta 478 496 484 482 512 C1' H2U A 17 alpha beta 509 527 515 513 545 C1' G A 18 alpha beta 540 562 546 543 578 C1' G A 19 alpha beta 573 595 579 576 611 C1' G A 20 alpha beta 606 628 612 609 644 C1' A A 21 alpha beta 639 660 645 642 676 C1' G A 22 alpha beta 671 693 677 674 709 C1' A A 23 alpha beta 704 725 710 707 741 C1' G A 24 alpha beta 736 758 742 739 774 C1' C A 25 alpha beta 769 788 775 772 804 C1' M2G A 26 alpha beta 799 823 805 802 843 C1' C A 27 alpha beta 838 857 844 841 873 C1' C A 28 alpha beta 868 887 874 871 903 C1' A A 29 alpha beta 898 919 904 901 935 C1' G A 30 alpha beta 930 952 936 933 968 C1' A A 31 alpha beta 963 984 969 966 997 C1' OMC A 32 alpha beta 1003 1014 989 998 1034 C1' U A 33 alpha beta 1029 1048 1035 1032 1063 C1' G A 34 alpha beta 1058 1080 1064 1061 1096 C1' C A 35 alpha beta 1091 1110 1097 1094 1126 C1' C A 36 alpha beta 1121 1140 1127 1124 1172 C1' YG A 37 alpha beta 1178 1203 1156 1173 1220 C1' A A 38 alpha beta 1215 1236 1221 1218 1249 C1' PSU A 39 alpha beta 1255 1262 1245 1250 1279 C1' 5MC A 40 alpha beta 1274 1294 1280 1277 1312 C1' U A 41 alpha beta 1307 1326 1313 1310 1341 C1' G A 42 alpha beta 1336 1358 1342 1339 1374 C1' G A 43 alpha beta 1369 1391 1375 1372 1407 C1' A A 44 alpha beta 1402 1423 1408 1405 1439 C1' G A 45 alpha beta 1434 1456 1440 1437 1472 C1' 7MG A 46 alpha beta 1467 1490 1473 1470 1509 C1' U A 47 alpha beta 1504 1523 1510 1507 1538 C1' C A 48 alpha beta 1533 1552 1539 1536 1568 C1' 5MC A 49 alpha beta 1563 1583 1569 1566 1601 C1' U A 50 alpha beta 1596 1615 1602 1599 1630 C1' G A 51 alpha beta 1625 1647 1631 1628 1663 C1' U A 52 alpha beta 1658 1677 1664 1661 1692 C1' G A 53 alpha beta 1687 1709 1693 1690 1723 C1' 5MU A 54 alpha beta 1729 1739 1714 1724 1753 C1' PSU A 55 alpha beta 1759 1766 1749 1754 1783 C1' C A 56 alpha beta 1778 1797 1784 1781 1813 C1' G A 57 alpha beta 1808 1830 1814 1811 1846 C1' 1MA A 58 alpha beta 1841 1863 1847 1844 1882 C1' U A 59 alpha beta 1877 1896 1883 1880 1911 C1' C A 60 alpha beta 1906 1925 1912 1909 1941 C1' C A 61 alpha beta 1936 1955 1942 1939 1971 C1' A A 62 alpha beta 1966 1987 1972 1969 2003 C1' C A 63 alpha beta 1998 2017 2004 2001 2033 C1' A A 64 alpha beta 2028 2049 2034 2031 2065 C1' G A 65 alpha beta 2060 2082 2066 2063 2098 C1' A A 66 alpha beta 2093 2114 2099 2096 2130 C1' A A 67 alpha beta 2125 2146 2131 2128 2162 C1' U A 68 alpha beta 2157 2176 2163 2160 2191 C1' U A 69 alpha beta 2186 2205 2192 2189 2220 C1' C A 70 alpha beta 2215 2234 2221 2218 2250 C1' G A 71 alpha beta 2245 2267 2251 2248 2283 C1' C A 72 alpha beta 2278 2297 2284 2281 2313 C1' A A 73 alpha beta 2308 2329 2314 2311 2345 C1' C A 74 alpha beta 2340 2359 2346 2343 2375 C1' C A 75 alpha beta 2370 2389 2376 2373 2405 C1' A A 76 alpha beta 2400 2421 2406 2403 2439 C1' G B 1 alpha beta 2434 2456 2440 2437 2472 C1' C B 2 alpha beta 2467 2486 2473 2470 2502 C1' G B 3 alpha beta 2497 2519 2503 2500 2535 C1' G B 4 alpha beta 2530 2552 2536 2533 2568 C1' A B 5 alpha beta 2563 2584 2569 2566 2600 C1' U B 6 alpha beta 2595 2614 2601 2598 2629 C1' U B 7 alpha beta 2624 2643 2630 2627 2658 C1' U B 8 alpha beta 2653 2672 2659 2656 2687 C1' A B 9 alpha beta 2682 2703 2688 2685 2719 C1' 2MG B 10 alpha beta 2714 2737 2720 2717 2755 C1' C B 11 alpha beta 2750 2769 2756 2753 2785 C1' U B 12 alpha beta 2780 2799 2786 2783 2814 C1' C B 13 alpha beta 2809 2828 2815 2812 2844 C1' A B 14 alpha beta 2839 2860 2845 2842 2876 C1' G B 15 alpha beta 2871 2893 2877 2874 2907 C1' H2U B 16 alpha beta 2904 2922 2910 2908 2938 C1' H2U B 17 alpha beta 2935 2953 2941 2939 2971 C1' G B 18 alpha beta 2966 2988 2972 2969 3004 C1' G B 19 alpha beta 2999 3021 3005 3002 3037 C1' G B 20 alpha beta 3032 3054 3038 3035 3070 C1' A B 21 alpha beta 3065 3086 3071 3068 3102 C1' G B 22 alpha beta 3097 3119 3103 3100 3135 C1' A B 23 alpha beta 3130 3151 3136 3133 3167 C1' G B 24 alpha beta 3162 3184 3168 3165 3200 C1' C B 25 alpha beta 3195 3214 3201 3198 3230 C1' M2G B 26 alpha beta 3225 3249 3231 3228 3269 C1' C B 27 alpha beta 3264 3283 3270 3267 3299 C1' C B 28 alpha beta 3294 3313 3300 3297 3329 C1' A B 29 alpha beta 3324 3345 3330 3327 3361 C1' G B 30 alpha beta 3356 3378 3362 3359 3394 C1' A B 31 alpha beta 3389 3410 3395 3392 3423 C1' OMC B 32 alpha beta 3429 3440 3415 3424 3460 C1' U B 33 alpha beta 3455 3474 3461 3458 3489 C1' U B 34 alpha beta 3484 3503 3490 3487 3518 C1' A B 35 alpha beta 3513 3534 3519 3516 3550 C1' G B 36 alpha beta 3545 3567 3551 3548 3599 C1' YG B 37 alpha beta 3605 3630 3583 3600 3647 C1' A B 38 alpha beta 3642 3663 3648 3645 3676 C1' PSU B 39 alpha beta 3682 3689 3672 3677 3706 C1' 5MC B 40 alpha beta 3701 3721 3707 3704 3739 C1' U B 41 alpha beta 3734 3753 3740 3737 3768 C1' G B 42 alpha beta 3763 3785 3769 3766 3801 C1' G B 43 alpha beta 3796 3818 3802 3799 3834 C1' A B 44 alpha beta 3829 3850 3835 3832 3866 C1' G B 45 alpha beta 3861 3883 3867 3864 3899 C1' 7MG B 46 alpha beta 3894 3917 3900 3897 3936 C1' U B 47 alpha beta 3931 3950 3937 3934 3965 C1' C B 48 alpha beta 3960 3979 3966 3963 3995 C1' 5MC B 49 alpha beta 3990 4010 3996 3993 4028 C1' U B 50 alpha beta 4023 4042 4029 4026 4057 C1' G B 51 alpha beta 4052 4074 4058 4055 4090 C1' U B 52 alpha beta 4085 4104 4091 4088 4119 C1' G B 53 alpha beta 4114 4136 4120 4117 4150 C1' 5MU B 54 alpha beta 4156 4166 4141 4151 4180 C1' PSU B 55 alpha beta 4186 4193 4176 4181 4210 C1' C B 56 alpha beta 4205 4224 4211 4208 4240 C1' G B 57 alpha beta 4235 4257 4241 4238 4273 C1' 1MA B 58 alpha beta 4268 4290 4274 4271 4309 C1' U B 59 alpha beta 4304 4323 4310 4307 4338 C1' C B 60 alpha beta 4333 4352 4339 4336 4368 C1' C B 61 alpha beta 4363 4382 4369 4366 4398 C1' A B 62 alpha beta 4393 4414 4399 4396 4430 C1' C B 63 alpha beta 4425 4444 4431 4428 4460 C1' A B 64 alpha beta 4455 4476 4461 4458 4492 C1' G B 65 alpha beta 4487 4509 4493 4490 4525 C1' A B 66 alpha beta 4520 4541 4526 4523 4557 C1' A B 67 alpha beta 4552 4573 4558 4555 4589 C1' U B 68 alpha beta 4584 4603 4590 4587 4618 C1' U B 69 alpha beta 4613 4632 4619 4616 4647 C1' C B 70 alpha beta 4642 4661 4648 4645 4677 C1' G B 71 alpha beta 4672 4694 4678 4675 4710 C1' C B 72 alpha beta 4705 4724 4711 4708 4740 C1' A B 73 alpha beta 4735 4756 4741 4738 4772 C1' C B 74 alpha beta 4767 4786 4773 4770 4802 C1' C B 75 alpha beta 4797 4816 4803 4800 4832 C1' A B 76 alpha beta 4827 4848 4833 4830 4865 C1' G C 1 alpha beta 4860 4882 4866 4863 4898 C1' G C 2 alpha beta 4893 4915 4899 4896 4931 C1' C C 3 alpha beta 4926 4945 4932 4929 4961 C1' G C 4 alpha beta 4956 4978 4962 4959 4994 C1' G C 5 alpha beta 4989 5011 4995 4992 5027 C1' U C 6 alpha beta 5022 5041 5028 5025 5056 C1' U C 7 alpha beta 5051 5070 5057 5054 5085 C1' G C 8 alpha beta 5080 5102 5086 5083 5118 C1' C C 9 alpha beta 5113 5132 5119 5116 5148 C1' A C 10 alpha beta 5143 5164 5149 5146 5180 C1' G C 11 alpha beta 5175 5197 5181 5178 5213 C1' G C 12 alpha beta 5208 5230 5214 5211 5246 C1' U C 13 alpha beta 5241 5260 5247 5244 5275 C1' C C 14 alpha beta 5270 5289 5276 5273 5305 C1' U C 15 alpha beta 5300 5319 5306 5303 5334 C1' G C 16 alpha beta 5329 5351 5335 5332 5367 C1' C C 17 alpha beta 5362 5381 5368 5365 5397 C1' A C 18 alpha beta 5392 5413 5398 5395 5429 C1' C C 19 alpha beta 5424 5443 5430 5427 5459 C1' C C 20 alpha beta 5454 5473 5460 5457 5489 C1' G C 21 alpha beta 5484 5506 5490 5487 5522 C1' C C 22 alpha beta 5517 5536 5523 5520 5552 C1' C C 23 alpha beta 5547 5566 5553 5550 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G A 1 OK OK 13 9 29 12 44 C2' C A 2 OK OK 46 42 59 45 74 C2' G A 3 OK OK 76 72 92 75 107 C2' G A 4 OK OK 109 105 125 108 140 C2' A A 5 OK OK 142 138 157 141 172 C2' U A 6 OK OK 174 170 187 173 201 C2' U A 7 OK OK 203 199 216 202 230 C2' U A 8 OK OK 232 228 245 231 259 C2' A A 9 OK OK 261 257 276 260 291 C2' 2MG A 10 OK OK 293 289 310 292 327 C2' C A 11 OK OK 329 325 342 328 357 C2' U A 12 OK OK 359 355 372 358 386 C2' C A 13 OK OK 388 384 401 387 416 C2' A A 14 OK OK 418 414 433 417 448 C2' G A 15 OK OK 450 446 466 449 482 C2' H2U A 16 OK OK 481 479 497 483 513 C2' H2U A 17 OK OK 512 510 528 514 543 C2' G A 18 OK OK 545 541 561 544 576 C2' G A 19 OK OK 578 574 594 577 609 C2' G A 20 OK OK 611 607 627 610 642 C2' A A 21 OK OK 644 640 659 643 674 C2' G A 22 OK OK 676 672 692 675 707 C2' A A 23 OK OK 709 705 724 708 739 C2' G A 24 OK OK 741 737 757 740 772 C2' C A 25 OK OK 774 770 787 773 802 C2' M2G A 26 OK OK 804 800 822 803 841 C2' C A 27 OK OK 843 839 856 842 871 C2' C A 28 OK OK 873 869 886 872 901 C2' A A 29 OK OK 903 899 918 902 933 C2' G A 30 OK OK 935 931 951 934 966 C2' A A 31 OK OK 968 964 983 967 998 C2' OMC A 32 OK OK 997 1001 1015 999 1032 C2' U A 33 OK OK 1034 1030 1047 1033 1061 C2' G A 34 OK OK 1063 1059 1079 1062 1094 C2' C A 35 OK OK 1096 1092 1109 1095 1124 C2' C A 36 OK OK 1126 1122 1139 1125 1173 C2' YG A 37 OK OK 1172 1175 1204 1174 1218 C2' A A 38 OK OK 1220 1216 1235 1219 1250 C2' PSU A 39 OK OK 1249 1252 1263 1251 1277 C2' 5MC A 40 OK OK 1279 1275 1293 1278 1310 C2' U A 41 OK OK 1312 1308 1325 1311 1339 C2' G A 42 OK OK 1341 1337 1357 1340 1372 C2' G A 43 OK OK 1374 1370 1390 1373 1405 C2' A A 44 OK OK 1407 1403 1422 1406 1437 C2' G A 45 OK OK 1439 1435 1455 1438 1470 C2' 7MG A 46 OK OK 1472 1468 1489 1471 1507 C2' U A 47 OK OK 1509 1505 1522 1508 1536 C2' C A 48 OK OK 1538 1534 1551 1537 1566 C2' 5MC A 49 OK OK 1568 1564 1582 1567 1599 C2' U A 50 OK OK 1601 1597 1614 1600 1628 C2' G A 51 OK OK 1630 1626 1646 1629 1661 C2' U A 52 OK OK 1663 1659 1676 1662 1690 C2' G A 53 OK OK 1692 1688 1708 1691 1724 C2' 5MU A 54 OK OK 1723 1726 1740 1725 1754 C2' PSU A 55 OK OK 1753 1756 1767 1755 1781 C2' C A 56 OK OK 1783 1779 1796 1782 1811 C2' G A 57 OK OK 1813 1809 1829 1812 1844 C2' 1MA A 58 OK OK 1846 1842 1862 1845 1880 C2' U A 59 OK OK 1882 1878 1895 1881 1909 C2' C A 60 OK OK 1911 1907 1924 1910 1939 C2' C A 61 OK OK 1941 1937 1954 1940 1969 C2' A A 62 OK OK 1971 1967 1986 1970 2001 C2' C A 63 OK OK 2003 1999 2016 2002 2031 C2' A A 64 OK OK 2033 2029 2048 2032 2063 C2' G A 65 OK OK 2065 2061 2081 2064 2096 C2' A A 66 OK OK 2098 2094 2113 2097 2128 C2' A A 67 OK OK 2130 2126 2145 2129 2160 C2' U A 68 OK OK 2162 2158 2175 2161 2189 C2' U A 69 OK OK 2191 2187 2204 2190 2218 C2' C A 70 OK OK 2220 2216 2233 2219 2248 C2' G A 71 OK OK 2250 2246 2266 2249 2281 C2' C A 72 OK OK 2283 2279 2296 2282 2311 C2' A A 73 OK OK 2313 2309 2328 2312 2343 C2' C A 74 OK OK 2345 2341 2358 2344 2373 C2' C A 75 OK OK 2375 2371 2388 2374 2403 C2' A A 76 OK OK 2405 2401 2420 2404 2437 C2' G B 1 OK OK 2439 2435 2455 2438 2470 C2' C B 2 OK OK 2472 2468 2485 2471 2500 C2' G B 3 OK OK 2502 2498 2518 2501 2533 C2' G B 4 OK OK 2535 2531 2551 2534 2566 C2' A B 5 OK OK 2568 2564 2583 2567 2598 C2' U B 6 OK OK 2600 2596 2613 2599 2627 C2' U B 7 OK OK 2629 2625 2642 2628 2656 C2' U B 8 OK OK 2658 2654 2671 2657 2685 C2' A B 9 OK OK 2687 2683 2702 2686 2717 C2' 2MG B 10 OK OK 2719 2715 2736 2718 2753 C2' C B 11 OK OK 2755 2751 2768 2754 2783 C2' U B 12 OK OK 2785 2781 2798 2784 2812 C2' C B 13 OK OK 2814 2810 2827 2813 2842 C2' A B 14 OK OK 2844 2840 2859 2843 2874 C2' G B 15 OK OK 2876 2872 2892 2875 2908 C2' H2U B 16 OK OK 2907 2905 2923 2909 2939 C2' H2U B 17 OK OK 2938 2936 2954 2940 2969 C2' G B 18 OK OK 2971 2967 2987 2970 3002 C2' G B 19 OK OK 3004 3000 3020 3003 3035 C2' G B 20 OK OK 3037 3033 3053 3036 3068 C2' A B 21 OK OK 3070 3066 3085 3069 3100 C2' G B 22 OK OK 3102 3098 3118 3101 3133 C2' A B 23 OK OK 3135 3131 3150 3134 3165 C2' G B 24 OK OK 3167 3163 3183 3166 3198 C2' C B 25 OK OK 3200 3196 3213 3199 3228 C2' M2G B 26 OK OK 3230 3226 3248 3229 3267 C2' C B 27 OK OK 3269 3265 3282 3268 3297 C2' C B 28 OK OK 3299 3295 3312 3298 3327 C2' A B 29 OK OK 3329 3325 3344 3328 3359 C2' G B 30 OK OK 3361 3357 3377 3360 3392 C2' A B 31 OK OK 3394 3390 3409 3393 3424 C2' OMC B 32 OK OK 3423 3427 3441 3425 3458 C2' U B 33 OK OK 3460 3456 3473 3459 3487 C2' U B 34 OK OK 3489 3485 3502 3488 3516 C2' A B 35 OK OK 3518 3514 3533 3517 3548 C2' G B 36 OK OK 3550 3546 3566 3549 3600 C2' YG B 37 OK OK 3599 3602 3631 3601 3645 C2' A B 38 OK OK 3647 3643 3662 3646 3677 C2' PSU B 39 OK OK 3676 3679 3690 3678 3704 C2' 5MC B 40 OK OK 3706 3702 3720 3705 3737 C2' U B 41 OK OK 3739 3735 3752 3738 3766 C2' G B 42 OK OK 3768 3764 3784 3767 3799 C2' G B 43 OK OK 3801 3797 3817 3800 3832 C2' A B 44 OK OK 3834 3830 3849 3833 3864 C2' G B 45 OK OK 3866 3862 3882 3865 3897 C2' 7MG B 46 OK OK 3899 3895 3916 3898 3934 C2' U B 47 OK OK 3936 3932 3949 3935 3963 C2' C B 48 OK OK 3965 3961 3978 3964 3993 C2' 5MC B 49 OK OK 3995 3991 4009 3994 4026 C2' U B 50 OK OK 4028 4024 4041 4027 4055 C2' G B 51 OK OK 4057 4053 4073 4056 4088 C2' U B 52 OK OK 4090 4086 4103 4089 4117 C2' G B 53 OK OK 4119 4115 4135 4118 4151 C2' 5MU B 54 OK OK 4150 4153 4167 4152 4181 C2' PSU B 55 OK OK 4180 4183 4194 4182 4208 C2' C B 56 OK OK 4210 4206 4223 4209 4238 C2' G B 57 OK OK 4240 4236 4256 4239 4271 C2' 1MA B 58 OK OK 4273 4269 4289 4272 4307 C2' U B 59 OK OK 4309 4305 4322 4308 4336 C2' C B 60 OK OK 4338 4334 4351 4337 4366 C2' C B 61 OK OK 4368 4364 4381 4367 4396 C2' A B 62 OK OK 4398 4394 4413 4397 4428 C2' C B 63 OK OK 4430 4426 4443 4429 4458 C2' A B 64 OK OK 4460 4456 4475 4459 4490 C2' G B 65 OK OK 4492 4488 4508 4491 4523 C2' A B 66 OK OK 4525 4521 4540 4524 4555 C2' A B 67 OK OK 4557 4553 4572 4556 4587 C2' U B 68 OK OK 4589 4585 4602 4588 4616 C2' U B 69 OK OK 4618 4614 4631 4617 4645 C2' C B 70 OK OK 4647 4643 4660 4646 4675 C2' G B 71 OK OK 4677 4673 4693 4676 4708 C2' C B 72 OK OK 4710 4706 4723 4709 4738 C2' A B 73 OK OK 4740 4736 4755 4739 4770 C2' C B 74 OK OK 4772 4768 4785 4771 4800 C2' C B 75 OK OK 4802 4798 4815 4801 4830 C2' A B 76 OK OK 4832 4828 4847 4831 4863 C2' G C 1 OK OK 4865 4861 4881 4864 4896 C2' G C 2 OK OK 4898 4894 4914 4897 4929 C2' C C 3 OK OK 4931 4927 4944 4930 4959 C2' G C 4 OK OK 4961 4957 4977 4960 4992 C2' G C 5 OK OK 4994 4990 5010 4993 5025 C2' U C 6 OK OK 5027 5023 5040 5026 5054 C2' U C 7 OK OK 5056 5052 5069 5055 5083 C2' G C 8 OK OK 5085 5081 5101 5084 5116 C2' C C 9 OK OK 5118 5114 5131 5117 5146 C2' A C 10 OK OK 5148 5144 5163 5147 5178 C2' G C 11 OK OK 5180 5176 5196 5179 5211 C2' G C 12 OK OK 5213 5209 5229 5212 5244 C2' U C 13 OK OK 5246 5242 5259 5245 5273 C2' C C 14 OK OK 5275 5271 5288 5274 5303 C2' U C 15 OK OK 5305 5301 5318 5304 5332 C2' G C 16 OK OK 5334 5330 5350 5333 5365 C2' C C 17 OK OK 5367 5363 5380 5366 5395 C2' A C 18 OK OK 5397 5393 5412 5396 5427 C2' C C 19 OK OK 5429 5425 5442 5428 5457 C2' C C 20 OK OK 5459 5455 5472 5458 5487 C2' G C 21 OK OK 5489 5485 5505 5488 5520 C2' C C 22 OK OK 5522 5518 5535 5521 5550 C2' C C 23 OK OK 5552 5548 5565 5551 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G A 1 OK OK 7 28 10 11 42 C3' C A 2 OK OK 40 58 43 44 72 C3' G A 3 OK OK 70 91 73 74 105 C3' G A 4 OK OK 103 124 106 107 138 C3' A A 5 OK OK 136 156 139 140 170 C3' U A 6 OK OK 168 186 171 172 199 C3' U A 7 OK OK 197 215 200 201 228 C3' U A 8 OK OK 226 244 229 230 257 C3' A A 9 OK OK 255 275 258 259 289 C3' 2MG A 10 OK OK 287 309 290 291 325 C3' C A 11 OK OK 323 341 326 327 355 C3' U A 12 OK OK 353 371 356 357 384 C3' C A 13 OK OK 382 400 385 386 414 C3' A A 14 OK OK 412 432 415 416 446 C3' G A 15 OK OK 444 465 447 448 479 C3' H2U A 16 OK OK 477 495 480 482 510 C3' H2U A 17 OK OK 508 526 511 513 541 C3' G A 18 OK OK 539 560 542 543 574 C3' G A 19 OK OK 572 593 575 576 607 C3' G A 20 OK OK 605 626 608 609 640 C3' A A 21 OK OK 638 658 641 642 672 C3' G A 22 OK OK 670 691 673 674 705 C3' A A 23 OK OK 703 723 706 707 737 C3' G A 24 OK OK 735 756 738 739 770 C3' C A 25 OK OK 768 786 771 772 800 C3' M2G A 26 OK OK 798 821 801 802 839 C3' C A 27 OK OK 837 855 840 841 869 C3' C A 28 OK OK 867 885 870 871 899 C3' A A 29 OK OK 897 917 900 901 931 C3' G A 30 OK OK 929 950 932 933 964 C3' A A 31 OK OK 962 982 965 966 1001 C3' OMC A 32 OK OK 1002 1019 1004 998 1030 C3' U A 33 OK OK 1028 1046 1031 1032 1059 C3' G A 34 OK OK 1057 1078 1060 1061 1092 C3' C A 35 OK OK 1090 1108 1093 1094 1122 C3' C A 36 OK OK 1120 1138 1123 1124 1175 C3' YG A 37 OK OK 1177 1205 1176 1173 1216 C3' A A 38 OK OK 1214 1234 1217 1218 1252 C3' PSU A 39 OK OK 1253 1264 1254 1250 1275 C3' 5MC A 40 OK OK 1273 1292 1276 1277 1308 C3' U A 41 OK OK 1306 1324 1309 1310 1337 C3' G A 42 OK OK 1335 1356 1338 1339 1370 C3' G A 43 OK OK 1368 1389 1371 1372 1403 C3' A A 44 OK OK 1401 1421 1404 1405 1435 C3' G A 45 OK OK 1433 1454 1436 1437 1468 C3' 7MG A 46 OK OK 1466 1488 1469 1470 1505 C3' U A 47 OK OK 1503 1521 1506 1507 1534 C3' C A 48 OK OK 1532 1550 1535 1536 1564 C3' 5MC A 49 OK OK 1562 1581 1565 1566 1597 C3' U A 50 OK OK 1595 1613 1598 1599 1626 C3' G A 51 OK OK 1624 1645 1627 1628 1659 C3' U A 52 OK OK 1657 1675 1660 1661 1688 C3' G A 53 OK OK 1686 1707 1689 1690 1726 C3' 5MU A 54 OK OK 1727 1741 1728 1724 1756 C3' PSU A 55 OK OK 1757 1768 1758 1754 1779 C3' C A 56 OK OK 1777 1795 1780 1781 1809 C3' G A 57 OK OK 1807 1828 1810 1811 1842 C3' 1MA A 58 OK OK 1840 1861 1843 1844 1878 C3' U A 59 OK OK 1876 1894 1879 1880 1907 C3' C A 60 OK OK 1905 1923 1908 1909 1937 C3' C A 61 OK OK 1935 1953 1938 1939 1967 C3' A A 62 OK OK 1965 1985 1968 1969 1999 C3' C A 63 OK OK 1997 2015 2000 2001 2029 C3' A A 64 OK OK 2027 2047 2030 2031 2061 C3' G A 65 OK OK 2059 2080 2062 2063 2094 C3' A A 66 OK OK 2092 2112 2095 2096 2126 C3' A A 67 OK OK 2124 2144 2127 2128 2158 C3' U A 68 OK OK 2156 2174 2159 2160 2187 C3' U A 69 OK OK 2185 2203 2188 2189 2216 C3' C A 70 OK OK 2214 2232 2217 2218 2246 C3' G A 71 OK OK 2244 2265 2247 2248 2279 C3' C A 72 OK OK 2277 2295 2280 2281 2309 C3' A A 73 OK OK 2307 2327 2310 2311 2341 C3' C A 74 OK OK 2339 2357 2342 2343 2371 C3' C A 75 OK OK 2369 2387 2372 2373 2401 C3' A A 76 OK OK 2399 2419 2402 2403 2435 C3' G B 1 OK OK 2433 2454 2436 2437 2468 C3' C B 2 OK OK 2466 2484 2469 2470 2498 C3' G B 3 OK OK 2496 2517 2499 2500 2531 C3' G B 4 OK OK 2529 2550 2532 2533 2564 C3' A B 5 OK OK 2562 2582 2565 2566 2596 C3' U B 6 OK OK 2594 2612 2597 2598 2625 C3' U B 7 OK OK 2623 2641 2626 2627 2654 C3' U B 8 OK OK 2652 2670 2655 2656 2683 C3' A B 9 OK OK 2681 2701 2684 2685 2715 C3' 2MG B 10 OK OK 2713 2735 2716 2717 2751 C3' C B 11 OK OK 2749 2767 2752 2753 2781 C3' U B 12 OK OK 2779 2797 2782 2783 2810 C3' C B 13 OK OK 2808 2826 2811 2812 2840 C3' A B 14 OK OK 2838 2858 2841 2842 2872 C3' G B 15 OK OK 2870 2891 2873 2874 2905 C3' H2U B 16 OK OK 2903 2921 2906 2908 2936 C3' H2U B 17 OK OK 2934 2952 2937 2939 2967 C3' G B 18 OK OK 2965 2986 2968 2969 3000 C3' G B 19 OK OK 2998 3019 3001 3002 3033 C3' G B 20 OK OK 3031 3052 3034 3035 3066 C3' A B 21 OK OK 3064 3084 3067 3068 3098 C3' G B 22 OK OK 3096 3117 3099 3100 3131 C3' A B 23 OK OK 3129 3149 3132 3133 3163 C3' G B 24 OK OK 3161 3182 3164 3165 3196 C3' C B 25 OK OK 3194 3212 3197 3198 3226 C3' M2G B 26 OK OK 3224 3247 3227 3228 3265 C3' C B 27 OK OK 3263 3281 3266 3267 3295 C3' C B 28 OK OK 3293 3311 3296 3297 3325 C3' A B 29 OK OK 3323 3343 3326 3327 3357 C3' G B 30 OK OK 3355 3376 3358 3359 3390 C3' A B 31 OK OK 3388 3408 3391 3392 3427 C3' OMC B 32 OK OK 3428 3445 3430 3424 3456 C3' U B 33 OK OK 3454 3472 3457 3458 3485 C3' U B 34 OK OK 3483 3501 3486 3487 3514 C3' A B 35 OK OK 3512 3532 3515 3516 3546 C3' G B 36 OK OK 3544 3565 3547 3548 3602 C3' YG B 37 OK OK 3604 3632 3603 3600 3643 C3' A B 38 OK OK 3641 3661 3644 3645 3679 C3' PSU B 39 OK OK 3680 3691 3681 3677 3702 C3' 5MC B 40 OK OK 3700 3719 3703 3704 3735 C3' U B 41 OK OK 3733 3751 3736 3737 3764 C3' G B 42 OK OK 3762 3783 3765 3766 3797 C3' G B 43 OK OK 3795 3816 3798 3799 3830 C3' A B 44 OK OK 3828 3848 3831 3832 3862 C3' G B 45 OK OK 3860 3881 3863 3864 3895 C3' 7MG B 46 OK OK 3893 3915 3896 3897 3932 C3' U B 47 OK OK 3930 3948 3933 3934 3961 C3' C B 48 OK OK 3959 3977 3962 3963 3991 C3' 5MC B 49 OK OK 3989 4008 3992 3993 4024 C3' U B 50 OK OK 4022 4040 4025 4026 4053 C3' G B 51 OK OK 4051 4072 4054 4055 4086 C3' U B 52 OK OK 4084 4102 4087 4088 4115 C3' G B 53 OK OK 4113 4134 4116 4117 4153 C3' 5MU B 54 OK OK 4154 4168 4155 4151 4183 C3' PSU B 55 OK OK 4184 4195 4185 4181 4206 C3' C B 56 OK OK 4204 4222 4207 4208 4236 C3' G B 57 OK OK 4234 4255 4237 4238 4269 C3' 1MA B 58 OK OK 4267 4288 4270 4271 4305 C3' U B 59 OK OK 4303 4321 4306 4307 4334 C3' C B 60 OK OK 4332 4350 4335 4336 4364 C3' C B 61 OK OK 4362 4380 4365 4366 4394 C3' A B 62 OK OK 4392 4412 4395 4396 4426 C3' C B 63 OK OK 4424 4442 4427 4428 4456 C3' A B 64 OK OK 4454 4474 4457 4458 4488 C3' G B 65 OK OK 4486 4507 4489 4490 4521 C3' A B 66 OK OK 4519 4539 4522 4523 4553 C3' A B 67 OK OK 4551 4571 4554 4555 4585 C3' U B 68 OK OK 4583 4601 4586 4587 4614 C3' U B 69 OK OK 4612 4630 4615 4616 4643 C3' C B 70 OK OK 4641 4659 4644 4645 4673 C3' G B 71 OK OK 4671 4692 4674 4675 4706 C3' C B 72 OK OK 4704 4722 4707 4708 4736 C3' A B 73 OK OK 4734 4754 4737 4738 4768 C3' C B 74 OK OK 4766 4784 4769 4770 4798 C3' C B 75 OK OK 4796 4814 4799 4800 4828 C3' A B 76 OK OK 4826 4846 4829 4830 4861 C3' G C 1 OK OK 4859 4880 4862 4863 4894 C3' G C 2 OK OK 4892 4913 4895 4896 4927 C3' C C 3 OK OK 4925 4943 4928 4929 4957 C3' G C 4 OK OK 4955 4976 4958 4959 4990 C3' G C 5 OK OK 4988 5009 4991 4992 5023 C3' U C 6 OK OK 5021 5039 5024 5025 5052 C3' U C 7 OK OK 5050 5068 5053 5054 5081 C3' G C 8 OK OK 5079 5100 5082 5083 5114 C3' C C 9 OK OK 5112 5130 5115 5116 5144 C3' A C 10 OK OK 5142 5162 5145 5146 5176 C3' G C 11 OK OK 5174 5195 5177 5178 5209 C3' G C 12 OK OK 5207 5228 5210 5211 5242 C3' U C 13 OK OK 5240 5258 5243 5244 5271 C3' C C 14 OK OK 5269 5287 5272 5273 5301 C3' U C 15 OK OK 5299 5317 5302 5303 5330 C3' G C 16 OK OK 5328 5349 5331 5332 5363 C3' C C 17 OK OK 5361 5379 5364 5365 5393 C3' A C 18 OK OK 5391 5411 5394 5395 5425 C3' C C 19 OK OK 5423 5441 5426 5427 5455 C3' C C 20 OK OK 5453 5471 5456 5457 5485 C3' G C 21 OK OK 5483 5504 5486 5487 5518 C3' C C 22 OK OK 5516 5534 5519 5520 5548 C3' C C 23 OK OK 5546 5564 5549 5550 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G A 1 OK OK 9 27 6 8 40 C4' C A 2 OK OK 42 57 39 41 70 C4' G A 3 OK OK 72 90 69 71 103 C4' G A 4 OK OK 105 123 102 104 136 C4' A A 5 OK OK 138 155 135 137 168 C4' U A 6 OK OK 170 185 167 169 197 C4' U A 7 OK OK 199 214 196 198 226 C4' U A 8 OK OK 228 243 225 227 255 C4' A A 9 OK OK 257 274 254 256 287 C4' 2MG A 10 OK OK 289 308 286 288 323 C4' C A 11 OK OK 325 340 322 324 353 C4' U A 12 OK OK 355 370 352 354 382 C4' C A 13 OK OK 384 399 381 383 412 C4' A A 14 OK OK 414 431 411 413 444 C4' G A 15 OK OK 446 464 443 445 477 C4' H2U A 16 OK OK 479 494 476 478 508 C4' H2U A 17 OK OK 510 525 507 509 539 C4' G A 18 OK OK 541 559 538 540 572 C4' G A 19 OK OK 574 592 571 573 605 C4' G A 20 OK OK 607 625 604 606 638 C4' A A 21 OK OK 640 657 637 639 670 C4' G A 22 OK OK 672 690 669 671 703 C4' A A 23 OK OK 705 722 702 704 735 C4' G A 24 OK OK 737 755 734 736 768 C4' C A 25 OK OK 770 785 767 769 798 C4' M2G A 26 OK OK 800 820 797 799 837 C4' C A 27 OK OK 839 854 836 838 867 C4' C A 28 OK OK 869 884 866 868 897 C4' A A 29 OK OK 899 916 896 898 929 C4' G A 30 OK OK 931 949 928 930 962 C4' A A 31 OK OK 964 981 961 963 1002 C4' OMC A 32 OK OK 1001 1020 1005 1003 1028 C4' U A 33 OK OK 1030 1045 1027 1029 1057 C4' G A 34 OK OK 1059 1077 1056 1058 1090 C4' C A 35 OK OK 1092 1107 1089 1091 1120 C4' C A 36 OK OK 1122 1137 1119 1121 1177 C4' YG A 37 OK OK 1175 1206 1179 1178 1214 C4' A A 38 OK OK 1216 1233 1213 1215 1253 C4' PSU A 39 OK OK 1252 1265 1256 1255 1273 C4' 5MC A 40 OK OK 1275 1291 1272 1274 1306 C4' U A 41 OK OK 1308 1323 1305 1307 1335 C4' G A 42 OK OK 1337 1355 1334 1336 1368 C4' G A 43 OK OK 1370 1388 1367 1369 1401 C4' A A 44 OK OK 1403 1420 1400 1402 1433 C4' G A 45 OK OK 1435 1453 1432 1434 1466 C4' 7MG A 46 OK OK 1468 1487 1465 1467 1503 C4' U A 47 OK OK 1505 1520 1502 1504 1532 C4' C A 48 OK OK 1534 1549 1531 1533 1562 C4' 5MC A 49 OK OK 1564 1580 1561 1563 1595 C4' U A 50 OK OK 1597 1612 1594 1596 1624 C4' G A 51 OK OK 1626 1644 1623 1625 1657 C4' U A 52 OK OK 1659 1674 1656 1658 1686 C4' G A 53 OK OK 1688 1706 1685 1687 1727 C4' 5MU A 54 OK OK 1726 1742 1730 1729 1757 C4' PSU A 55 OK OK 1756 1769 1760 1759 1777 C4' C A 56 OK OK 1779 1794 1776 1778 1807 C4' G A 57 OK OK 1809 1827 1806 1808 1840 C4' 1MA A 58 OK OK 1842 1860 1839 1841 1876 C4' U A 59 OK OK 1878 1893 1875 1877 1905 C4' C A 60 OK OK 1907 1922 1904 1906 1935 C4' C A 61 OK OK 1937 1952 1934 1936 1965 C4' A A 62 OK OK 1967 1984 1964 1966 1997 C4' C A 63 OK OK 1999 2014 1996 1998 2027 C4' A A 64 OK OK 2029 2046 2026 2028 2059 C4' G A 65 OK OK 2061 2079 2058 2060 2092 C4' A A 66 OK OK 2094 2111 2091 2093 2124 C4' A A 67 OK OK 2126 2143 2123 2125 2156 C4' U A 68 OK OK 2158 2173 2155 2157 2185 C4' U A 69 OK OK 2187 2202 2184 2186 2214 C4' C A 70 OK OK 2216 2231 2213 2215 2244 C4' G A 71 OK OK 2246 2264 2243 2245 2277 C4' C A 72 OK OK 2279 2294 2276 2278 2307 C4' A A 73 OK OK 2309 2326 2306 2308 2339 C4' C A 74 OK OK 2341 2356 2338 2340 2369 C4' C A 75 OK OK 2371 2386 2368 2370 2399 C4' A A 76 OK OK 2401 2418 2398 2400 2433 C4' G B 1 OK OK 2435 2453 2432 2434 2466 C4' C B 2 OK OK 2468 2483 2465 2467 2496 C4' G B 3 OK OK 2498 2516 2495 2497 2529 C4' G B 4 OK OK 2531 2549 2528 2530 2562 C4' A B 5 OK OK 2564 2581 2561 2563 2594 C4' U B 6 OK OK 2596 2611 2593 2595 2623 C4' U B 7 OK OK 2625 2640 2622 2624 2652 C4' U B 8 OK OK 2654 2669 2651 2653 2681 C4' A B 9 OK OK 2683 2700 2680 2682 2713 C4' 2MG B 10 OK OK 2715 2734 2712 2714 2749 C4' C B 11 OK OK 2751 2766 2748 2750 2779 C4' U B 12 OK OK 2781 2796 2778 2780 2808 C4' C B 13 OK OK 2810 2825 2807 2809 2838 C4' A B 14 OK OK 2840 2857 2837 2839 2870 C4' G B 15 OK OK 2872 2890 2869 2871 2903 C4' H2U B 16 OK OK 2905 2920 2902 2904 2934 C4' H2U B 17 OK OK 2936 2951 2933 2935 2965 C4' G B 18 OK OK 2967 2985 2964 2966 2998 C4' G B 19 OK OK 3000 3018 2997 2999 3031 C4' G B 20 OK OK 3033 3051 3030 3032 3064 C4' A B 21 OK OK 3066 3083 3063 3065 3096 C4' G B 22 OK OK 3098 3116 3095 3097 3129 C4' A B 23 OK OK 3131 3148 3128 3130 3161 C4' G B 24 OK OK 3163 3181 3160 3162 3194 C4' C B 25 OK OK 3196 3211 3193 3195 3224 C4' M2G B 26 OK OK 3226 3246 3223 3225 3263 C4' C B 27 OK OK 3265 3280 3262 3264 3293 C4' C B 28 OK OK 3295 3310 3292 3294 3323 C4' A B 29 OK OK 3325 3342 3322 3324 3355 C4' G B 30 OK OK 3357 3375 3354 3356 3388 C4' A B 31 OK OK 3390 3407 3387 3389 3428 C4' OMC B 32 OK OK 3427 3446 3431 3429 3454 C4' U B 33 OK OK 3456 3471 3453 3455 3483 C4' U B 34 OK OK 3485 3500 3482 3484 3512 C4' A B 35 OK OK 3514 3531 3511 3513 3544 C4' G B 36 OK OK 3546 3564 3543 3545 3604 C4' YG B 37 OK OK 3602 3633 3606 3605 3641 C4' A B 38 OK OK 3643 3660 3640 3642 3680 C4' PSU B 39 OK OK 3679 3692 3683 3682 3700 C4' 5MC B 40 OK OK 3702 3718 3699 3701 3733 C4' U B 41 OK OK 3735 3750 3732 3734 3762 C4' G B 42 OK OK 3764 3782 3761 3763 3795 C4' G B 43 OK OK 3797 3815 3794 3796 3828 C4' A B 44 OK OK 3830 3847 3827 3829 3860 C4' G B 45 OK OK 3862 3880 3859 3861 3893 C4' 7MG B 46 OK OK 3895 3914 3892 3894 3930 C4' U B 47 OK OK 3932 3947 3929 3931 3959 C4' C B 48 OK OK 3961 3976 3958 3960 3989 C4' 5MC B 49 OK OK 3991 4007 3988 3990 4022 C4' U B 50 OK OK 4024 4039 4021 4023 4051 C4' G B 51 OK OK 4053 4071 4050 4052 4084 C4' U B 52 OK OK 4086 4101 4083 4085 4113 C4' G B 53 OK OK 4115 4133 4112 4114 4154 C4' 5MU B 54 OK OK 4153 4169 4157 4156 4184 C4' PSU B 55 OK OK 4183 4196 4187 4186 4204 C4' C B 56 OK OK 4206 4221 4203 4205 4234 C4' G B 57 OK OK 4236 4254 4233 4235 4267 C4' 1MA B 58 OK OK 4269 4287 4266 4268 4303 C4' U B 59 OK OK 4305 4320 4302 4304 4332 C4' C B 60 OK OK 4334 4349 4331 4333 4362 C4' C B 61 OK OK 4364 4379 4361 4363 4392 C4' A B 62 OK OK 4394 4411 4391 4393 4424 C4' C B 63 OK OK 4426 4441 4423 4425 4454 C4' A B 64 OK OK 4456 4473 4453 4455 4486 C4' G B 65 OK OK 4488 4506 4485 4487 4519 C4' A B 66 OK OK 4521 4538 4518 4520 4551 C4' A B 67 OK OK 4553 4570 4550 4552 4583 C4' U B 68 OK OK 4585 4600 4582 4584 4612 C4' U B 69 OK OK 4614 4629 4611 4613 4641 C4' C B 70 OK OK 4643 4658 4640 4642 4671 C4' G B 71 OK OK 4673 4691 4670 4672 4704 C4' C B 72 OK OK 4706 4721 4703 4705 4734 C4' A B 73 OK OK 4736 4753 4733 4735 4766 C4' C B 74 OK OK 4768 4783 4765 4767 4796 C4' C B 75 OK OK 4798 4813 4795 4797 4826 C4' A B 76 OK OK 4828 4845 4825 4827 4859 C4' G C 1 OK OK 4861 4879 4858 4860 4892 C4' G C 2 OK OK 4894 4912 4891 4893 4925 C4' C C 3 OK OK 4927 4942 4924 4926 4955 C4' G C 4 OK OK 4957 4975 4954 4956 4988 C4' G C 5 OK OK 4990 5008 4987 4989 5021 C4' U C 6 OK OK 5023 5038 5020 5022 5050 C4' U C 7 OK OK 5052 5067 5049 5051 5079 C4' G C 8 OK OK 5081 5099 5078 5080 5112 C4' C C 9 OK OK 5114 5129 5111 5113 5142 C4' A C 10 OK OK 5144 5161 5141 5143 5174 C4' G C 11 OK OK 5176 5194 5173 5175 5207 C4' G C 12 OK OK 5209 5227 5206 5208 5240 C4' U C 13 OK OK 5242 5257 5239 5241 5269 C4' C C 14 OK OK 5271 5286 5268 5270 5299 C4' U C 15 OK OK 5301 5316 5298 5300 5328 C4' G C 16 OK OK 5330 5348 5327 5329 5361 C4' C C 17 OK OK 5363 5378 5360 5362 5391 C4' A C 18 OK OK 5393 5410 5390 5392 5423 C4' C C 19 OK OK 5425 5440 5422 5424 5453 C4' C C 20 OK OK 5455 5470 5452 5454 5483 C4' G C 21 OK OK 5485 5503 5482 5484 5516 C4' C C 22 OK OK 5518 5533 5515 5517 5546 C4' C C 23 OK OK 5548 5563 5545 5547 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G A 1 OK OK 5 25 26 7 39 C5' C A 2 OK OK 38 55 56 40 69 C5' G A 3 OK OK 68 88 89 70 102 C5' G A 4 OK OK 101 121 122 103 135 C5' A A 5 OK OK 134 153 154 136 167 C5' U A 6 OK OK 166 183 184 168 196 C5' U A 7 OK OK 195 212 213 197 225 C5' U A 8 OK OK 224 241 242 226 254 C5' A A 9 OK OK 253 272 273 255 286 C5' 2MG A 10 OK OK 285 306 307 287 322 C5' C A 11 OK OK 321 338 339 323 352 C5' U A 12 OK OK 351 368 369 353 381 C5' C A 13 OK OK 380 397 398 382 411 C5' A A 14 OK OK 410 429 430 412 443 C5' G A 15 OK OK 442 462 463 444 476 C5' H2U A 16 OK OK 475 492 493 477 507 C5' H2U A 17 OK OK 506 523 524 508 538 C5' G A 18 OK OK 537 557 558 539 571 C5' G A 19 OK OK 570 590 591 572 604 C5' G A 20 OK OK 603 623 624 605 637 C5' A A 21 OK OK 636 655 656 638 669 C5' G A 22 OK OK 668 688 689 670 702 C5' A A 23 OK OK 701 720 721 703 734 C5' G A 24 OK OK 733 753 754 735 767 C5' C A 25 OK OK 766 783 784 768 797 C5' M2G A 26 OK OK 796 818 819 798 836 C5' C A 27 OK OK 835 852 853 837 866 C5' C A 28 OK OK 865 882 883 867 896 C5' A A 29 OK OK 895 914 915 897 928 C5' G A 30 OK OK 927 947 948 929 961 C5' A A 31 OK OK 960 979 980 962 1005 C5' OMC A 32 OK OK 1006 1021 1022 1002 1027 C5' U A 33 OK OK 1026 1043 1044 1028 1056 C5' G A 34 OK OK 1055 1075 1076 1057 1089 C5' C A 35 OK OK 1088 1105 1106 1090 1119 C5' C A 36 OK OK 1118 1135 1136 1120 1179 C5' YG A 37 OK OK 1180 1207 1208 1177 1213 C5' A A 38 OK OK 1212 1231 1232 1214 1256 C5' PSU A 39 OK OK 1257 1266 1267 1253 1272 C5' 5MC A 40 OK OK 1271 1289 1290 1273 1305 C5' U A 41 OK OK 1304 1321 1322 1306 1334 C5' G A 42 OK OK 1333 1353 1354 1335 1367 C5' G A 43 OK OK 1366 1386 1387 1368 1400 C5' A A 44 OK OK 1399 1418 1419 1401 1432 C5' G A 45 OK OK 1431 1451 1452 1433 1465 C5' 7MG A 46 OK OK 1464 1485 1486 1466 1502 C5' U A 47 OK OK 1501 1518 1519 1503 1531 C5' C A 48 OK OK 1530 1547 1548 1532 1561 C5' 5MC A 49 OK OK 1560 1578 1579 1562 1594 C5' U A 50 OK OK 1593 1610 1611 1595 1623 C5' G A 51 OK OK 1622 1642 1643 1624 1656 C5' U A 52 OK OK 1655 1672 1673 1657 1685 C5' G A 53 OK OK 1684 1704 1705 1686 1730 C5' 5MU A 54 OK OK 1731 1743 1744 1727 1760 C5' PSU A 55 OK OK 1761 1770 1771 1757 1776 C5' C A 56 OK OK 1775 1792 1793 1777 1806 C5' G A 57 OK OK 1805 1825 1826 1807 1839 C5' 1MA A 58 OK OK 1838 1858 1859 1840 1875 C5' U A 59 OK OK 1874 1891 1892 1876 1904 C5' C A 60 OK OK 1903 1920 1921 1905 1934 C5' C A 61 OK OK 1933 1950 1951 1935 1964 C5' A A 62 OK OK 1963 1982 1983 1965 1996 C5' C A 63 OK OK 1995 2012 2013 1997 2026 C5' A A 64 OK OK 2025 2044 2045 2027 2058 C5' G A 65 OK OK 2057 2077 2078 2059 2091 C5' A A 66 OK OK 2090 2109 2110 2092 2123 C5' A A 67 OK OK 2122 2141 2142 2124 2155 C5' U A 68 OK OK 2154 2171 2172 2156 2184 C5' U A 69 OK OK 2183 2200 2201 2185 2213 C5' C A 70 OK OK 2212 2229 2230 2214 2243 C5' G A 71 OK OK 2242 2262 2263 2244 2276 C5' C A 72 OK OK 2275 2292 2293 2277 2306 C5' A A 73 OK OK 2305 2324 2325 2307 2338 C5' C A 74 OK OK 2337 2354 2355 2339 2368 C5' C A 75 OK OK 2367 2384 2385 2369 2398 C5' A A 76 OK OK 2397 2416 2417 2399 2432 C5' G B 1 OK OK 2431 2451 2452 2433 2465 C5' C B 2 OK OK 2464 2481 2482 2466 2495 C5' G B 3 OK OK 2494 2514 2515 2496 2528 C5' G B 4 OK OK 2527 2547 2548 2529 2561 C5' A B 5 OK OK 2560 2579 2580 2562 2593 C5' U B 6 OK OK 2592 2609 2610 2594 2622 C5' U B 7 OK OK 2621 2638 2639 2623 2651 C5' U B 8 OK OK 2650 2667 2668 2652 2680 C5' A B 9 OK OK 2679 2698 2699 2681 2712 C5' 2MG B 10 OK OK 2711 2732 2733 2713 2748 C5' C B 11 OK OK 2747 2764 2765 2749 2778 C5' U B 12 OK OK 2777 2794 2795 2779 2807 C5' C B 13 OK OK 2806 2823 2824 2808 2837 C5' A B 14 OK OK 2836 2855 2856 2838 2869 C5' G B 15 OK OK 2868 2888 2889 2870 2902 C5' H2U B 16 OK OK 2901 2918 2919 2903 2933 C5' H2U B 17 OK OK 2932 2949 2950 2934 2964 C5' G B 18 OK OK 2963 2983 2984 2965 2997 C5' G B 19 OK OK 2996 3016 3017 2998 3030 C5' G B 20 OK OK 3029 3049 3050 3031 3063 C5' A B 21 OK OK 3062 3081 3082 3064 3095 C5' G B 22 OK OK 3094 3114 3115 3096 3128 C5' A B 23 OK OK 3127 3146 3147 3129 3160 C5' G B 24 OK OK 3159 3179 3180 3161 3193 C5' C B 25 OK OK 3192 3209 3210 3194 3223 C5' M2G B 26 OK OK 3222 3244 3245 3224 3262 C5' C B 27 OK OK 3261 3278 3279 3263 3292 C5' C B 28 OK OK 3291 3308 3309 3293 3322 C5' A B 29 OK OK 3321 3340 3341 3323 3354 C5' G B 30 OK OK 3353 3373 3374 3355 3387 C5' A B 31 OK OK 3386 3405 3406 3388 3431 C5' OMC B 32 OK OK 3432 3447 3448 3428 3453 C5' U B 33 OK OK 3452 3469 3470 3454 3482 C5' U B 34 OK OK 3481 3498 3499 3483 3511 C5' A B 35 OK OK 3510 3529 3530 3512 3543 C5' G B 36 OK OK 3542 3562 3563 3544 3606 C5' YG B 37 OK OK 3607 3634 3635 3604 3640 C5' A B 38 OK OK 3639 3658 3659 3641 3683 C5' PSU B 39 OK OK 3684 3693 3694 3680 3699 C5' 5MC B 40 OK OK 3698 3716 3717 3700 3732 C5' U B 41 OK OK 3731 3748 3749 3733 3761 C5' G B 42 OK OK 3760 3780 3781 3762 3794 C5' G B 43 OK OK 3793 3813 3814 3795 3827 C5' A B 44 OK OK 3826 3845 3846 3828 3859 C5' G B 45 OK OK 3858 3878 3879 3860 3892 C5' 7MG B 46 OK OK 3891 3912 3913 3893 3929 C5' U B 47 OK OK 3928 3945 3946 3930 3958 C5' C B 48 OK OK 3957 3974 3975 3959 3988 C5' 5MC B 49 OK OK 3987 4005 4006 3989 4021 C5' U B 50 OK OK 4020 4037 4038 4022 4050 C5' G B 51 OK OK 4049 4069 4070 4051 4083 C5' U B 52 OK OK 4082 4099 4100 4084 4112 C5' G B 53 OK OK 4111 4131 4132 4113 4157 C5' 5MU B 54 OK OK 4158 4170 4171 4154 4187 C5' PSU B 55 OK OK 4188 4197 4198 4184 4203 C5' C B 56 OK OK 4202 4219 4220 4204 4233 C5' G B 57 OK OK 4232 4252 4253 4234 4266 C5' 1MA B 58 OK OK 4265 4285 4286 4267 4302 C5' U B 59 OK OK 4301 4318 4319 4303 4331 C5' C B 60 OK OK 4330 4347 4348 4332 4361 C5' C B 61 OK OK 4360 4377 4378 4362 4391 C5' A B 62 OK OK 4390 4409 4410 4392 4423 C5' C B 63 OK OK 4422 4439 4440 4424 4453 C5' A B 64 OK OK 4452 4471 4472 4454 4485 C5' G B 65 OK OK 4484 4504 4505 4486 4518 C5' A B 66 OK OK 4517 4536 4537 4519 4550 C5' A B 67 OK OK 4549 4568 4569 4551 4582 C5' U B 68 OK OK 4581 4598 4599 4583 4611 C5' U B 69 OK OK 4610 4627 4628 4612 4640 C5' C B 70 OK OK 4639 4656 4657 4641 4670 C5' G B 71 OK OK 4669 4689 4690 4671 4703 C5' C B 72 OK OK 4702 4719 4720 4704 4733 C5' A B 73 OK OK 4732 4751 4752 4734 4765 C5' C B 74 OK OK 4764 4781 4782 4766 4795 C5' C B 75 OK OK 4794 4811 4812 4796 4825 C5' A B 76 OK OK 4824 4843 4844 4826 4858 C5' G C 1 OK OK 4857 4877 4878 4859 4891 C5' G C 2 OK OK 4890 4910 4911 4892 4924 C5' C C 3 OK OK 4923 4940 4941 4925 4954 C5' G C 4 OK OK 4953 4973 4974 4955 4987 C5' G C 5 OK OK 4986 5006 5007 4988 5020 C5' U C 6 OK OK 5019 5036 5037 5021 5049 C5' U C 7 OK OK 5048 5065 5066 5050 5078 C5' G C 8 OK OK 5077 5097 5098 5079 5111 C5' C C 9 OK OK 5110 5127 5128 5112 5141 C5' A C 10 OK OK 5140 5159 5160 5142 5173 C5' G C 11 OK OK 5172 5192 5193 5174 5206 C5' G C 12 OK OK 5205 5225 5226 5207 5239 C5' U C 13 OK OK 5238 5255 5256 5240 5268 C5' C C 14 OK OK 5267 5284 5285 5269 5298 C5' U C 15 OK OK 5297 5314 5315 5299 5327 C5' G C 16 OK OK 5326 5346 5347 5328 5360 C5' C C 17 OK OK 5359 5376 5377 5361 5390 C5' A C 18 OK OK 5389 5408 5409 5391 5422 C5' C C 19 OK OK 5421 5438 5439 5423 5452 C5' C C 20 OK OK 5451 5468 5469 5453 5482 C5' G C 21 OK OK 5481 5501 5502 5483 5515 C5' C C 22 OK OK 5514 5531 5532 5516 5545 C5' C C 23 OK OK 5544 5561 5562 5546 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G A 1 OK OK 3 4 5 35 P C A 2 distorted distorted 10 36 37 38 65 P G A 3 distorted distorted 43 66 67 68 98 P G A 4 distorted distorted 73 99 100 101 131 P A A 5 distorted distorted 106 132 133 134 163 P U A 6 distorted distorted 139 164 165 166 192 P U A 7 distorted distorted 171 193 194 195 221 P U A 8 distorted distorted 200 222 223 224 250 P A A 9 distorted distorted 229 251 252 253 282 P 2MG A 10 distorted distorted 258 283 284 285 318 P C A 11 distorted distorted 290 319 320 321 348 P U A 12 distorted distorted 326 349 350 351 377 P C A 13 distorted distorted 356 378 379 380 407 P A A 14 distorted distorted 385 408 409 410 439 P G A 15 distorted distorted 415 440 441 442 472 P H2U A 16 distorted distorted 447 473 474 475 503 P H2U A 17 distorted distorted 480 504 505 506 534 P G A 18 distorted distorted 511 535 536 537 567 P G A 19 distorted distorted 542 568 569 570 600 P G A 20 distorted distorted 575 601 602 603 633 P A A 21 distorted distorted 608 634 635 636 665 P G A 22 distorted distorted 641 666 667 668 698 P A A 23 distorted distorted 673 699 700 701 730 P G A 24 distorted distorted 706 731 732 733 763 P C A 25 distorted distorted 738 764 765 766 793 P M2G A 26 distorted distorted 771 794 795 796 832 P C A 27 distorted distorted 801 833 834 835 862 P C A 28 distorted distorted 840 863 864 865 892 P A A 29 distorted distorted 870 893 894 895 924 P G A 30 distorted distorted 900 925 926 927 957 P A A 31 distorted distorted 932 958 959 960 1007 P OMC A 32 distorted distorted 965 1008 1009 1006 1023 P U A 33 distorted distorted 1004 1024 1025 1026 1052 P G A 34 distorted distorted 1031 1053 1054 1055 1085 P C A 35 distorted distorted 1060 1086 1087 1088 1115 P C A 36 distorted distorted 1093 1116 1117 1118 1181 P YG A 37 distorted distorted 1123 1182 1183 1180 1209 P A A 38 distorted distorted 1176 1210 1211 1212 1258 P PSU A 39 distorted distorted 1217 1259 1260 1257 1268 P 5MC A 40 distorted distorted 1254 1269 1270 1271 1301 P U A 41 distorted distorted 1276 1302 1303 1304 1330 P G A 42 distorted distorted 1309 1331 1332 1333 1363 P G A 43 distorted distorted 1338 1364 1365 1366 1396 P A A 44 distorted distorted 1371 1397 1398 1399 1428 P G A 45 distorted distorted 1404 1429 1430 1431 1461 P 7MG A 46 distorted distorted 1436 1462 1463 1464 1498 P U A 47 distorted distorted 1469 1499 1500 1501 1527 P C A 48 distorted distorted 1506 1528 1529 1530 1557 P 5MC A 49 distorted distorted 1535 1558 1559 1560 1590 P U A 50 distorted distorted 1565 1591 1592 1593 1619 P G A 51 distorted distorted 1598 1620 1621 1622 1652 P U A 52 distorted distorted 1627 1653 1654 1655 1681 P G A 53 distorted distorted 1660 1682 1683 1684 1732 P 5MU A 54 distorted distorted 1689 1733 1734 1731 1762 P PSU A 55 distorted distorted 1728 1763 1764 1761 1772 P C A 56 distorted distorted 1758 1773 1774 1775 1802 P G A 57 distorted distorted 1780 1803 1804 1805 1835 P 1MA A 58 distorted distorted 1810 1836 1837 1838 1871 P U A 59 distorted distorted 1843 1872 1873 1874 1900 P C A 60 distorted distorted 1879 1901 1902 1903 1930 P C A 61 distorted distorted 1908 1931 1932 1933 1960 P A A 62 distorted distorted 1938 1961 1962 1963 1992 P C A 63 distorted distorted 1968 1993 1994 1995 2022 P A A 64 distorted distorted 2000 2023 2024 2025 2054 P G A 65 distorted distorted 2030 2055 2056 2057 2087 P A A 66 distorted distorted 2062 2088 2089 2090 2119 P A A 67 distorted distorted 2095 2120 2121 2122 2151 P U A 68 distorted distorted 2127 2152 2153 2154 2180 P U A 69 distorted distorted 2159 2181 2182 2183 2209 P C A 70 distorted distorted 2188 2210 2211 2212 2239 P G A 71 distorted distorted 2217 2240 2241 2242 2272 P C A 72 distorted distorted 2247 2273 2274 2275 2302 P A A 73 distorted distorted 2280 2303 2304 2305 2334 P C A 74 distorted distorted 2310 2335 2336 2337 2364 P C A 75 distorted distorted 2342 2365 2366 2367 2394 P A A 76 distorted distorted 2372 2395 2396 2397 2428 P G B 1 OK OK 2429 2430 2431 2461 P C B 2 distorted distorted 2436 2462 2463 2464 2491 P G B 3 distorted distorted 2469 2492 2493 2494 2524 P G B 4 distorted distorted 2499 2525 2526 2527 2557 P A B 5 distorted distorted 2532 2558 2559 2560 2589 P U B 6 distorted distorted 2565 2590 2591 2592 2618 P U B 7 distorted distorted 2597 2619 2620 2621 2647 P U B 8 distorted distorted 2626 2648 2649 2650 2676 P A B 9 distorted distorted 2655 2677 2678 2679 2708 P 2MG B 10 distorted distorted 2684 2709 2710 2711 2744 P C B 11 distorted distorted 2716 2745 2746 2747 2774 P U B 12 distorted distorted 2752 2775 2776 2777 2803 P C B 13 distorted distorted 2782 2804 2805 2806 2833 P A B 14 distorted distorted 2811 2834 2835 2836 2865 P G B 15 distorted distorted 2841 2866 2867 2868 2898 P H2U B 16 distorted distorted 2873 2899 2900 2901 2929 P H2U B 17 distorted distorted 2906 2930 2931 2932 2960 P G B 18 distorted distorted 2937 2961 2962 2963 2993 P G B 19 distorted distorted 2968 2994 2995 2996 3026 P G B 20 distorted distorted 3001 3027 3028 3029 3059 P A B 21 distorted distorted 3034 3060 3061 3062 3091 P G B 22 distorted distorted 3067 3092 3093 3094 3124 P A B 23 distorted distorted 3099 3125 3126 3127 3156 P G B 24 distorted distorted 3132 3157 3158 3159 3189 P C B 25 distorted distorted 3164 3190 3191 3192 3219 P M2G B 26 distorted distorted 3197 3220 3221 3222 3258 P C B 27 distorted distorted 3227 3259 3260 3261 3288 P C B 28 distorted distorted 3266 3289 3290 3291 3318 P A B 29 distorted distorted 3296 3319 3320 3321 3350 P G B 30 distorted distorted 3326 3351 3352 3353 3383 P A B 31 distorted distorted 3358 3384 3385 3386 3433 P OMC B 32 distorted distorted 3391 3434 3435 3432 3449 P U B 33 distorted distorted 3430 3450 3451 3452 3478 P U B 34 distorted distorted 3457 3479 3480 3481 3507 P A B 35 distorted distorted 3486 3508 3509 3510 3539 P G B 36 distorted distorted 3515 3540 3541 3542 3608 P YG B 37 distorted distorted 3547 3609 3610 3607 3636 P A B 38 distorted distorted 3603 3637 3638 3639 3685 P PSU B 39 distorted distorted 3644 3686 3687 3684 3695 P 5MC B 40 distorted distorted 3681 3696 3697 3698 3728 P U B 41 distorted distorted 3703 3729 3730 3731 3757 P G B 42 distorted distorted 3736 3758 3759 3760 3790 P G B 43 distorted distorted 3765 3791 3792 3793 3823 P A B 44 distorted distorted 3798 3824 3825 3826 3855 P G B 45 distorted distorted 3831 3856 3857 3858 3888 P 7MG B 46 distorted distorted 3863 3889 3890 3891 3925 P U B 47 distorted distorted 3896 3926 3927 3928 3954 P C B 48 distorted distorted 3933 3955 3956 3957 3984 P 5MC B 49 distorted distorted 3962 3985 3986 3987 4017 P U B 50 distorted distorted 3992 4018 4019 4020 4046 P G B 51 distorted distorted 4025 4047 4048 4049 4079 P U B 52 distorted distorted 4054 4080 4081 4082 4108 P G B 53 distorted distorted 4087 4109 4110 4111 4159 P 5MU B 54 distorted distorted 4116 4160 4161 4158 4189 P PSU B 55 distorted distorted 4155 4190 4191 4188 4199 P C B 56 distorted distorted 4185 4200 4201 4202 4229 P G B 57 distorted distorted 4207 4230 4231 4232 4262 P 1MA B 58 distorted distorted 4237 4263 4264 4265 4298 P U B 59 distorted distorted 4270 4299 4300 4301 4327 P C B 60 distorted distorted 4306 4328 4329 4330 4357 P C B 61 distorted distorted 4335 4358 4359 4360 4387 P A B 62 distorted distorted 4365 4388 4389 4390 4419 P C B 63 distorted distorted 4395 4420 4421 4422 4449 P A B 64 distorted distorted 4427 4450 4451 4452 4481 P G B 65 distorted distorted 4457 4482 4483 4484 4514 P A B 66 distorted distorted 4489 4515 4516 4517 4546 P A B 67 distorted distorted 4522 4547 4548 4549 4578 P U B 68 distorted distorted 4554 4579 4580 4581 4607 P U B 69 distorted distorted 4586 4608 4609 4610 4636 P C B 70 distorted distorted 4615 4637 4638 4639 4666 P G B 71 distorted distorted 4644 4667 4668 4669 4699 P C B 72 distorted distorted 4674 4700 4701 4702 4729 P A B 73 distorted distorted 4707 4730 4731 4732 4761 P C B 74 distorted distorted 4737 4762 4763 4764 4791 P C B 75 distorted distorted 4769 4792 4793 4794 4821 P A B 76 distorted distorted 4799 4822 4823 4824 4854 P G C 1 distorted distorted 4855 4856 4857 4887 P G C 2 distorted distorted 4862 4888 4889 4890 4920 P C C 3 distorted distorted 4895 4921 4922 4923 4950 P G C 4 distorted distorted 4928 4951 4952 4953 4983 P G C 5 distorted distorted 4958 4984 4985 4986 5016 P U C 6 distorted distorted 4991 5017 5018 5019 5045 P U C 7 distorted distorted 5024 5046 5047 5048 5074 P G C 8 distorted distorted 5053 5075 5076 5077 5107 P C C 9 distorted distorted 5082 5108 5109 5110 5137 P A C 10 distorted distorted 5115 5138 5139 5140 5169 P G C 11 distorted distorted 5145 5170 5171 5172 5202 P G C 12 distorted distorted 5177 5203 5204 5205 5235 P U C 13 distorted distorted 5210 5236 5237 5238 5264 P C C 14 distorted distorted 5243 5265 5266 5267 5294 P U C 15 distorted distorted 5272 5295 5296 5297 5323 P G C 16 distorted distorted 5302 5324 5325 5326 5356 P C C 17 distorted distorted 5331 5357 5358 5359 5386 P A C 18 distorted distorted 5364 5387 5388 5389 5418 P C C 19 distorted distorted 5394 5419 5420 5421 5448 P C C 20 distorted distorted 5426 5449 5450 5451 5478 P G C 21 distorted distorted 5456 5479 5480 5481 5511 P C C 22 distorted distorted 5486 5512 5513 5514 5541 P C C 23 distorted distorted 5519 5542 5543 5544 ---------------------------------------------------------------------------------