ID code: '1QXI' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' C A 200 beta 7 13 10 32 C1' C A 201 beta 27 33 30 52 C1' A A 202 beta 47 53 50 74 C1' G A 203 beta 69 75 72 97 C1' U A 204 beta 92 98 95 117 C1' C A 205 beta 112 118 115 137 C1' G A 1 beta 132 138 135 160 C1' G A 2 beta 155 161 158 183 C1' A A 3 beta 178 184 181 205 C1' A A 4 beta 200 206 203 227 C1' C A 5 beta 222 228 225 247 C1' A A 6 beta 242 248 245 269 C1' C A 7 beta 264 270 267 289 C1' U A 8 beta 284 290 287 309 C1' A A 9 beta 304 310 307 331 C1' U A 10 beta 326 332 329 351 C1' A A 11 beta 346 352 349 373 C1' C A 12 beta 368 374 371 393 C1' G A 13 beta 388 394 391 416 C1' A A 14 beta 411 417 414 438 C1' C A 15 beta 433 439 436 458 C1' U A 16 beta 453 459 456 478 C1' G A 17 beta 473 479 476 501 C1' G A 18 beta 496 502 499 524 C1' U A 19 beta 519 525 522 544 C1' A A 20 beta 539 545 542 566 C1' C A 21 beta 561 567 564 586 C1' C A 22 beta 581 587 584 606 C1' G A 23 beta 601 607 604 629 C1' U A 24 beta 624 630 627 649 C1' A A 25 beta 644 650 647 671 C1' A A 26 beta 666 672 669 693 C1' A A 27 beta 688 694 691 715 C1' A A 28 beta 710 716 713 737 C1' G A 29 beta 732 738 735 760 C1' A A 30 beta 755 761 758 782 C1' C A 31 beta 777 783 780 802 C1' A A 32 beta 797 803 800 824 C1' A A 33 beta 819 825 822 846 C1' A A 34 beta 841 847 844 868 C1' U A 35 beta 863 869 866 888 C1' C A 36 beta 883 889 886 908 C1' U A 37 beta 903 909 906 928 C1' G A 38 beta 923 929 926 951 C1' C A 39 beta 946 952 949 971 C1' C A 40 beta 966 972 969 991 C1' C A 41 beta 986 992 989 1011 C1' U A 42 beta 1006 1012 1009 1031 C1' C A 43 beta 1026 1032 1029 1051 C1' A A 44 beta 1046 1052 1049 1073 C1' G A 45 beta 1068 1074 1071 1096 C1' A A 46 beta 1091 1097 1094 1118 C1' G A 47 beta 1113 1119 1116 1141 C1' C A 48 beta 1136 1142 1139 1161 C1' U A 49 beta 1156 1162 1159 1181 C1' U A 50 beta 1176 1182 1179 1201 C1' G A 51 beta 1196 1202 1199 1224 C1' A A 52 beta 1219 1225 1222 1246 C1' G A 53 beta 1241 1247 1244 1269 C1' A A 54 beta 1264 1270 1267 1291 C1' A A 55 beta 1286 1292 1289 1313 C1' C A 56 beta 1308 1314 1311 1333 C1' A A 57 beta 1328 1334 1331 1355 C1' U A 58 beta 1350 1356 1353 1375 C1' C A 59 beta 1370 1376 1373 1395 C1' U A 60 beta 1390 1396 1393 1415 C1' U A 61 beta 1410 1416 1413 1435 C1' C A 62 beta 1430 1436 1433 1455 C1' G A 63 beta 1450 1456 1453 1478 C1' G A 64 beta 1473 1479 1476 1501 C1' A A 65 beta 1496 1502 1499 1523 C1' U A 66 beta 1518 1524 1521 1543 C1' G A 67 beta 1538 1544 1541 1566 C1' C A 68 beta 1561 1567 1564 1586 C1' A A 69 beta 1581 1587 1584 1608 C1' G A 70 beta 1603 1609 1606 1631 C1' G A 71 beta 1626 1632 1629 1654 C1' G A 72 beta 1649 1655 1652 1677 C1' G A 73 beta 1672 1678 1675 1700 C1' A A 74 beta 1695 1701 1698 1722 C1' G A 75 beta 1717 1723 1720 1745 C1' G A 76 beta 1740 1746 1743 1768 C1' C A 77 beta 1763 1769 1766 1788 C1' A A 78 beta 1783 1789 1786 1810 C1' G A 79 beta 1805 1811 1808 1833 C1' C A 80 beta 1828 1834 1831 1853 C1' C A 81 beta 1848 1854 1851 1873 C1' C A 82 beta 1868 1874 1871 1893 C1' C A 83 beta 1888 1894 1891 1913 C1' C A 84 beta 1908 1914 1911 1933 C1' G A 85 beta 1928 1934 1931 1956 C1' G A 86 beta 1951 1957 1954 1979 C1' U A 87 beta 1974 1980 1977 1999 C1' G A 88 beta 1994 2000 1997 2022 C1' G A 89 beta 2017 2023 2020 2045 C1' C A 90 beta 2040 2046 2043 2065 C1' U A 91 beta 2060 2066 2063 2085 C1' U A 92 beta 2080 2086 2083 2105 C1' U A 93 beta 2100 2106 2103 2125 C1' A A 94 beta 2120 2126 2123 2147 C1' A A 95 beta 2142 2148 2145 2169 C1' C A 96 beta 2164 2170 2167 2189 C1' G A 97 beta 2184 2190 2187 2212 C1' C A 98 beta 2207 2213 2210 2232 C1' C A 99 beta 2227 2233 2230 2252 C1' A A 100 beta 2247 2253 2250 2274 C1' A A 101 beta 2269 2275 2272 2296 C1' C A 102 beta 2291 2297 2294 2316 C1' G A 103 beta 2311 2317 2314 2339 C1' U A 104 beta 2334 2340 2337 2359 C1' U A 105 beta 2354 2360 2357 2379 C1' C A 106 beta 2374 2380 2377 2399 C1' U A 107 beta 2394 2400 2397 2419 C1' C A 108 beta 2414 2420 2417 2439 C1' A A 109 beta 2434 2440 2437 2461 C1' A A 110 beta 2456 2462 2459 2483 C1' C A 111 beta 2478 2484 2481 2503 C1' A A 112 beta 2498 2504 2501 2525 C1' A A 113 beta 2520 2526 2523 2547 C1' U A 114 beta 2542 2548 2545 2567 C1' A A 115 beta 2562 2568 2565 2589 C1' G A 116 beta 2584 2590 2587 2612 C1' U A 117 beta 2607 2613 2610 2632 C1' G A 118 beta 2627 2633 2630 2655 C1' A A 119 beta 2650 2656 2653 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' C A 200 OK 12 8 11 30 C2' C A 201 OK 32 28 31 50 C2' A A 202 OK 52 48 51 72 C2' G A 203 OK 74 70 73 95 C2' U A 204 OK 97 93 96 115 C2' C A 205 OK 117 113 116 135 C2' G A 1 OK 137 133 136 158 C2' G A 2 OK 160 156 159 181 C2' A A 3 OK 183 179 182 203 C2' A A 4 OK 205 201 204 225 C2' C A 5 OK 227 223 226 245 C2' A A 6 OK 247 243 246 267 C2' C A 7 OK 269 265 268 287 C2' U A 8 OK 289 285 288 307 C2' A A 9 OK 309 305 308 329 C2' U A 10 OK 331 327 330 349 C2' A A 11 OK 351 347 350 371 C2' C A 12 OK 373 369 372 391 C2' G A 13 OK 393 389 392 414 C2' A A 14 OK 416 412 415 436 C2' C A 15 OK 438 434 437 456 C2' U A 16 OK 458 454 457 476 C2' G A 17 OK 478 474 477 499 C2' G A 18 OK 501 497 500 522 C2' U A 19 OK 524 520 523 542 C2' A A 20 OK 544 540 543 564 C2' C A 21 OK 566 562 565 584 C2' C A 22 OK 586 582 585 604 C2' G A 23 OK 606 602 605 627 C2' U A 24 OK 629 625 628 647 C2' A A 25 OK 649 645 648 669 C2' A A 26 OK 671 667 670 691 C2' A A 27 OK 693 689 692 713 C2' A A 28 OK 715 711 714 735 C2' G A 29 OK 737 733 736 758 C2' A A 30 OK 760 756 759 780 C2' C A 31 OK 782 778 781 800 C2' A A 32 OK 802 798 801 822 C2' A A 33 OK 824 820 823 844 C2' A A 34 OK 846 842 845 866 C2' U A 35 OK 868 864 867 886 C2' C A 36 OK 888 884 887 906 C2' U A 37 OK 908 904 907 926 C2' G A 38 OK 928 924 927 949 C2' C A 39 OK 951 947 950 969 C2' C A 40 OK 971 967 970 989 C2' C A 41 OK 991 987 990 1009 C2' U A 42 OK 1011 1007 1010 1029 C2' C A 43 OK 1031 1027 1030 1049 C2' A A 44 OK 1051 1047 1050 1071 C2' G A 45 OK 1073 1069 1072 1094 C2' A A 46 OK 1096 1092 1095 1116 C2' G A 47 OK 1118 1114 1117 1139 C2' C A 48 OK 1141 1137 1140 1159 C2' U A 49 OK 1161 1157 1160 1179 C2' U A 50 OK 1181 1177 1180 1199 C2' G A 51 OK 1201 1197 1200 1222 C2' A A 52 OK 1224 1220 1223 1244 C2' G A 53 OK 1246 1242 1245 1267 C2' A A 54 OK 1269 1265 1268 1289 C2' A A 55 OK 1291 1287 1290 1311 C2' C A 56 OK 1313 1309 1312 1331 C2' A A 57 OK 1333 1329 1332 1353 C2' U A 58 OK 1355 1351 1354 1373 C2' C A 59 OK 1375 1371 1374 1393 C2' U A 60 OK 1395 1391 1394 1413 C2' U A 61 OK 1415 1411 1414 1433 C2' C A 62 OK 1435 1431 1434 1453 C2' G A 63 OK 1455 1451 1454 1476 C2' G A 64 OK 1478 1474 1477 1499 C2' A A 65 OK 1501 1497 1500 1521 C2' U A 66 OK 1523 1519 1522 1541 C2' G A 67 OK 1543 1539 1542 1564 C2' C A 68 OK 1566 1562 1565 1584 C2' A A 69 OK 1586 1582 1585 1606 C2' G A 70 OK 1608 1604 1607 1629 C2' G A 71 OK 1631 1627 1630 1652 C2' G A 72 OK 1654 1650 1653 1675 C2' G A 73 OK 1677 1673 1676 1698 C2' A A 74 OK 1700 1696 1699 1720 C2' G A 75 OK 1722 1718 1721 1743 C2' G A 76 OK 1745 1741 1744 1766 C2' C A 77 OK 1768 1764 1767 1786 C2' A A 78 OK 1788 1784 1787 1808 C2' G A 79 OK 1810 1806 1809 1831 C2' C A 80 OK 1833 1829 1832 1851 C2' C A 81 OK 1853 1849 1852 1871 C2' C A 82 OK 1873 1869 1872 1891 C2' C A 83 OK 1893 1889 1892 1911 C2' C A 84 OK 1913 1909 1912 1931 C2' G A 85 OK 1933 1929 1932 1954 C2' G A 86 OK 1956 1952 1955 1977 C2' U A 87 OK 1979 1975 1978 1997 C2' G A 88 OK 1999 1995 1998 2020 C2' G A 89 OK 2022 2018 2021 2043 C2' C A 90 OK 2045 2041 2044 2063 C2' U A 91 OK 2065 2061 2064 2083 C2' U A 92 OK 2085 2081 2084 2103 C2' U A 93 OK 2105 2101 2104 2123 C2' A A 94 OK 2125 2121 2124 2145 C2' A A 95 OK 2147 2143 2146 2167 C2' C A 96 OK 2169 2165 2168 2187 C2' G A 97 OK 2189 2185 2188 2210 C2' C A 98 OK 2212 2208 2211 2230 C2' C A 99 OK 2232 2228 2231 2250 C2' A A 100 OK 2252 2248 2251 2272 C2' A A 101 OK 2274 2270 2273 2294 C2' C A 102 OK 2296 2292 2295 2314 C2' G A 103 OK 2316 2312 2315 2337 C2' U A 104 OK 2339 2335 2338 2357 C2' U A 105 OK 2359 2355 2358 2377 C2' C A 106 OK 2379 2375 2378 2397 C2' U A 107 OK 2399 2395 2398 2417 C2' C A 108 OK 2419 2415 2418 2437 C2' A A 109 OK 2439 2435 2438 2459 C2' A A 110 OK 2461 2457 2460 2481 C2' C A 111 OK 2483 2479 2482 2501 C2' A A 112 OK 2503 2499 2502 2523 C2' A A 113 OK 2525 2521 2524 2545 C2' U A 114 OK 2547 2543 2546 2565 C2' A A 115 OK 2567 2563 2566 2587 C2' G A 116 OK 2589 2585 2588 2610 C2' U A 117 OK 2612 2608 2611 2630 C2' G A 118 OK 2632 2628 2631 2653 C2' A A 119 OK 2655 2651 2654 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' C A 200 OK 6 9 10 28 C3' C A 201 OK 26 29 30 48 C3' A A 202 OK 46 49 50 70 C3' G A 203 OK 68 71 72 93 C3' U A 204 OK 91 94 95 113 C3' C A 205 OK 111 114 115 133 C3' G A 1 OK 131 134 135 156 C3' G A 2 OK 154 157 158 179 C3' A A 3 OK 177 180 181 201 C3' A A 4 OK 199 202 203 223 C3' C A 5 OK 221 224 225 243 C3' A A 6 OK 241 244 245 265 C3' C A 7 OK 263 266 267 285 C3' U A 8 OK 283 286 287 305 C3' A A 9 OK 303 306 307 327 C3' U A 10 OK 325 328 329 347 C3' A A 11 OK 345 348 349 369 C3' C A 12 OK 367 370 371 389 C3' G A 13 OK 387 390 391 412 C3' A A 14 OK 410 413 414 434 C3' C A 15 OK 432 435 436 454 C3' U A 16 OK 452 455 456 474 C3' G A 17 OK 472 475 476 497 C3' G A 18 OK 495 498 499 520 C3' U A 19 OK 518 521 522 540 C3' A A 20 OK 538 541 542 562 C3' C A 21 OK 560 563 564 582 C3' C A 22 OK 580 583 584 602 C3' G A 23 OK 600 603 604 625 C3' U A 24 OK 623 626 627 645 C3' A A 25 OK 643 646 647 667 C3' A A 26 OK 665 668 669 689 C3' A A 27 OK 687 690 691 711 C3' A A 28 OK 709 712 713 733 C3' G A 29 OK 731 734 735 756 C3' A A 30 OK 754 757 758 778 C3' C A 31 OK 776 779 780 798 C3' A A 32 OK 796 799 800 820 C3' A A 33 OK 818 821 822 842 C3' A A 34 OK 840 843 844 864 C3' U A 35 OK 862 865 866 884 C3' C A 36 OK 882 885 886 904 C3' U A 37 OK 902 905 906 924 C3' G A 38 OK 922 925 926 947 C3' C A 39 OK 945 948 949 967 C3' C A 40 OK 965 968 969 987 C3' C A 41 OK 985 988 989 1007 C3' U A 42 OK 1005 1008 1009 1027 C3' C A 43 OK 1025 1028 1029 1047 C3' A A 44 OK 1045 1048 1049 1069 C3' G A 45 OK 1067 1070 1071 1092 C3' A A 46 OK 1090 1093 1094 1114 C3' G A 47 OK 1112 1115 1116 1137 C3' C A 48 OK 1135 1138 1139 1157 C3' U A 49 OK 1155 1158 1159 1177 C3' U A 50 OK 1175 1178 1179 1197 C3' G A 51 OK 1195 1198 1199 1220 C3' A A 52 OK 1218 1221 1222 1242 C3' G A 53 OK 1240 1243 1244 1265 C3' A A 54 OK 1263 1266 1267 1287 C3' A A 55 OK 1285 1288 1289 1309 C3' C A 56 OK 1307 1310 1311 1329 C3' A A 57 OK 1327 1330 1331 1351 C3' U A 58 OK 1349 1352 1353 1371 C3' C A 59 OK 1369 1372 1373 1391 C3' U A 60 OK 1389 1392 1393 1411 C3' U A 61 OK 1409 1412 1413 1431 C3' C A 62 OK 1429 1432 1433 1451 C3' G A 63 OK 1449 1452 1453 1474 C3' G A 64 OK 1472 1475 1476 1497 C3' A A 65 OK 1495 1498 1499 1519 C3' U A 66 OK 1517 1520 1521 1539 C3' G A 67 OK 1537 1540 1541 1562 C3' C A 68 OK 1560 1563 1564 1582 C3' A A 69 OK 1580 1583 1584 1604 C3' G A 70 OK 1602 1605 1606 1627 C3' G A 71 OK 1625 1628 1629 1650 C3' G A 72 OK 1648 1651 1652 1673 C3' G A 73 OK 1671 1674 1675 1696 C3' A A 74 OK 1694 1697 1698 1718 C3' G A 75 OK 1716 1719 1720 1741 C3' G A 76 OK 1739 1742 1743 1764 C3' C A 77 OK 1762 1765 1766 1784 C3' A A 78 OK 1782 1785 1786 1806 C3' G A 79 OK 1804 1807 1808 1829 C3' C A 80 OK 1827 1830 1831 1849 C3' C A 81 OK 1847 1850 1851 1869 C3' C A 82 OK 1867 1870 1871 1889 C3' C A 83 OK 1887 1890 1891 1909 C3' C A 84 OK 1907 1910 1911 1929 C3' G A 85 OK 1927 1930 1931 1952 C3' G A 86 OK 1950 1953 1954 1975 C3' U A 87 OK 1973 1976 1977 1995 C3' G A 88 OK 1993 1996 1997 2018 C3' G A 89 OK 2016 2019 2020 2041 C3' C A 90 OK 2039 2042 2043 2061 C3' U A 91 OK 2059 2062 2063 2081 C3' U A 92 OK 2079 2082 2083 2101 C3' U A 93 OK 2099 2102 2103 2121 C3' A A 94 OK 2119 2122 2123 2143 C3' A A 95 OK 2141 2144 2145 2165 C3' C A 96 OK 2163 2166 2167 2185 C3' G A 97 OK 2183 2186 2187 2208 C3' C A 98 OK 2206 2209 2210 2228 C3' C A 99 OK 2226 2229 2230 2248 C3' A A 100 OK 2246 2249 2250 2270 C3' A A 101 OK 2268 2271 2272 2292 C3' C A 102 OK 2290 2293 2294 2312 C3' G A 103 OK 2310 2313 2314 2335 C3' U A 104 OK 2333 2336 2337 2355 C3' U A 105 OK 2353 2356 2357 2375 C3' C A 106 OK 2373 2376 2377 2395 C3' U A 107 OK 2393 2396 2397 2415 C3' C A 108 OK 2413 2416 2417 2435 C3' A A 109 OK 2433 2436 2437 2457 C3' A A 110 OK 2455 2458 2459 2479 C3' C A 111 OK 2477 2480 2481 2499 C3' A A 112 OK 2497 2500 2501 2521 C3' A A 113 OK 2519 2522 2523 2543 C3' U A 114 OK 2541 2544 2545 2563 C3' A A 115 OK 2561 2564 2565 2585 C3' G A 116 OK 2583 2586 2587 2608 C3' U A 117 OK 2606 2609 2610 2628 C3' G A 118 OK 2626 2629 2630 2651 C3' A A 119 OK 2649 2652 2653 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' C A 200 OK 8 5 7 26 C4' C A 201 OK 28 25 27 46 C4' A A 202 OK 48 45 47 68 C4' G A 203 OK 70 67 69 91 C4' U A 204 OK 93 90 92 111 C4' C A 205 OK 113 110 112 131 C4' G A 1 OK 133 130 132 154 C4' G A 2 OK 156 153 155 177 C4' A A 3 OK 179 176 178 199 C4' A A 4 OK 201 198 200 221 C4' C A 5 OK 223 220 222 241 C4' A A 6 OK 243 240 242 263 C4' C A 7 OK 265 262 264 283 C4' U A 8 OK 285 282 284 303 C4' A A 9 OK 305 302 304 325 C4' U A 10 OK 327 324 326 345 C4' A A 11 OK 347 344 346 367 C4' C A 12 OK 369 366 368 387 C4' G A 13 OK 389 386 388 410 C4' A A 14 OK 412 409 411 432 C4' C A 15 OK 434 431 433 452 C4' U A 16 OK 454 451 453 472 C4' G A 17 OK 474 471 473 495 C4' G A 18 OK 497 494 496 518 C4' U A 19 OK 520 517 519 538 C4' A A 20 OK 540 537 539 560 C4' C A 21 OK 562 559 561 580 C4' C A 22 OK 582 579 581 600 C4' G A 23 OK 602 599 601 623 C4' U A 24 OK 625 622 624 643 C4' A A 25 OK 645 642 644 665 C4' A A 26 OK 667 664 666 687 C4' A A 27 OK 689 686 688 709 C4' A A 28 OK 711 708 710 731 C4' G A 29 OK 733 730 732 754 C4' A A 30 OK 756 753 755 776 C4' C A 31 OK 778 775 777 796 C4' A A 32 OK 798 795 797 818 C4' A A 33 OK 820 817 819 840 C4' A A 34 OK 842 839 841 862 C4' U A 35 OK 864 861 863 882 C4' C A 36 OK 884 881 883 902 C4' U A 37 OK 904 901 903 922 C4' G A 38 OK 924 921 923 945 C4' C A 39 OK 947 944 946 965 C4' C A 40 OK 967 964 966 985 C4' C A 41 OK 987 984 986 1005 C4' U A 42 OK 1007 1004 1006 1025 C4' C A 43 OK 1027 1024 1026 1045 C4' A A 44 OK 1047 1044 1046 1067 C4' G A 45 OK 1069 1066 1068 1090 C4' A A 46 OK 1092 1089 1091 1112 C4' G A 47 OK 1114 1111 1113 1135 C4' C A 48 OK 1137 1134 1136 1155 C4' U A 49 OK 1157 1154 1156 1175 C4' U A 50 OK 1177 1174 1176 1195 C4' G A 51 OK 1197 1194 1196 1218 C4' A A 52 OK 1220 1217 1219 1240 C4' G A 53 OK 1242 1239 1241 1263 C4' A A 54 OK 1265 1262 1264 1285 C4' A A 55 OK 1287 1284 1286 1307 C4' C A 56 OK 1309 1306 1308 1327 C4' A A 57 OK 1329 1326 1328 1349 C4' U A 58 OK 1351 1348 1350 1369 C4' C A 59 OK 1371 1368 1370 1389 C4' U A 60 OK 1391 1388 1390 1409 C4' U A 61 OK 1411 1408 1410 1429 C4' C A 62 OK 1431 1428 1430 1449 C4' G A 63 OK 1451 1448 1450 1472 C4' G A 64 OK 1474 1471 1473 1495 C4' A A 65 OK 1497 1494 1496 1517 C4' U A 66 OK 1519 1516 1518 1537 C4' G A 67 OK 1539 1536 1538 1560 C4' C A 68 OK 1562 1559 1561 1580 C4' A A 69 OK 1582 1579 1581 1602 C4' G A 70 OK 1604 1601 1603 1625 C4' G A 71 OK 1627 1624 1626 1648 C4' G A 72 OK 1650 1647 1649 1671 C4' G A 73 OK 1673 1670 1672 1694 C4' A A 74 OK 1696 1693 1695 1716 C4' G A 75 OK 1718 1715 1717 1739 C4' G A 76 OK 1741 1738 1740 1762 C4' C A 77 OK 1764 1761 1763 1782 C4' A A 78 OK 1784 1781 1783 1804 C4' G A 79 OK 1806 1803 1805 1827 C4' C A 80 OK 1829 1826 1828 1847 C4' C A 81 OK 1849 1846 1848 1867 C4' C A 82 OK 1869 1866 1868 1887 C4' C A 83 OK 1889 1886 1888 1907 C4' C A 84 OK 1909 1906 1908 1927 C4' G A 85 OK 1929 1926 1928 1950 C4' G A 86 OK 1952 1949 1951 1973 C4' U A 87 OK 1975 1972 1974 1993 C4' G A 88 OK 1995 1992 1994 2016 C4' G A 89 OK 2018 2015 2017 2039 C4' C A 90 OK 2041 2038 2040 2059 C4' U A 91 OK 2061 2058 2060 2079 C4' U A 92 OK 2081 2078 2080 2099 C4' U A 93 OK 2101 2098 2100 2119 C4' A A 94 OK 2121 2118 2120 2141 C4' A A 95 OK 2143 2140 2142 2163 C4' C A 96 OK 2165 2162 2164 2183 C4' G A 97 OK 2185 2182 2184 2206 C4' C A 98 OK 2208 2205 2207 2226 C4' C A 99 OK 2228 2225 2227 2246 C4' A A 100 OK 2248 2245 2247 2268 C4' A A 101 OK 2270 2267 2269 2290 C4' C A 102 OK 2292 2289 2291 2310 C4' G A 103 OK 2312 2309 2311 2333 C4' U A 104 OK 2335 2332 2334 2353 C4' U A 105 OK 2355 2352 2354 2373 C4' C A 106 OK 2375 2372 2374 2393 C4' U A 107 OK 2395 2392 2394 2413 C4' C A 108 OK 2415 2412 2414 2433 C4' A A 109 OK 2435 2432 2434 2455 C4' A A 110 OK 2457 2454 2456 2477 C4' C A 111 OK 2479 2476 2478 2497 C4' A A 112 OK 2499 2496 2498 2519 C4' A A 113 OK 2521 2518 2520 2541 C4' U A 114 OK 2543 2540 2542 2561 C4' A A 115 OK 2563 2560 2562 2583 C4' G A 116 OK 2585 2582 2584 2606 C4' U A 117 OK 2608 2605 2607 2626 C4' G A 118 OK 2628 2625 2627 2649 C4' A A 119 OK 2651 2648 2650 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' C A 200 4 6 25 C5' C A 201 24 26 45 C5' A A 202 44 46 67 C5' G A 203 66 68 90 C5' U A 204 89 91 110 C5' C A 205 109 111 130 C5' G A 1 129 131 153 C5' G A 2 152 154 176 C5' A A 3 175 177 198 C5' A A 4 197 199 220 C5' C A 5 219 221 240 C5' A A 6 239 241 262 C5' C A 7 261 263 282 C5' U A 8 281 283 302 C5' A A 9 301 303 324 C5' U A 10 323 325 344 C5' A A 11 343 345 366 C5' C A 12 365 367 386 C5' G A 13 385 387 409 C5' A A 14 408 410 431 C5' C A 15 430 432 451 C5' U A 16 450 452 471 C5' G A 17 470 472 494 C5' G A 18 493 495 517 C5' U A 19 516 518 537 C5' A A 20 536 538 559 C5' C A 21 558 560 579 C5' C A 22 578 580 599 C5' G A 23 598 600 622 C5' U A 24 621 623 642 C5' A A 25 641 643 664 C5' A A 26 663 665 686 C5' A A 27 685 687 708 C5' A A 28 707 709 730 C5' G A 29 729 731 753 C5' A A 30 752 754 775 C5' C A 31 774 776 795 C5' A A 32 794 796 817 C5' A A 33 816 818 839 C5' A A 34 838 840 861 C5' U A 35 860 862 881 C5' C A 36 880 882 901 C5' U A 37 900 902 921 C5' G A 38 920 922 944 C5' C A 39 943 945 964 C5' C A 40 963 965 984 C5' C A 41 983 985 1004 C5' U A 42 1003 1005 1024 C5' C A 43 1023 1025 1044 C5' A A 44 1043 1045 1066 C5' G A 45 1065 1067 1089 C5' A A 46 1088 1090 1111 C5' G A 47 1110 1112 1134 C5' C A 48 1133 1135 1154 C5' U A 49 1153 1155 1174 C5' U A 50 1173 1175 1194 C5' G A 51 1193 1195 1217 C5' A A 52 1216 1218 1239 C5' G A 53 1238 1240 1262 C5' A A 54 1261 1263 1284 C5' A A 55 1283 1285 1306 C5' C A 56 1305 1307 1326 C5' A A 57 1325 1327 1348 C5' U A 58 1347 1349 1368 C5' C A 59 1367 1369 1388 C5' U A 60 1387 1389 1408 C5' U A 61 1407 1409 1428 C5' C A 62 1427 1429 1448 C5' G A 63 1447 1449 1471 C5' G A 64 1470 1472 1494 C5' A A 65 1493 1495 1516 C5' U A 66 1515 1517 1536 C5' G A 67 1535 1537 1559 C5' C A 68 1558 1560 1579 C5' A A 69 1578 1580 1601 C5' G A 70 1600 1602 1624 C5' G A 71 1623 1625 1647 C5' G A 72 1646 1648 1670 C5' G A 73 1669 1671 1693 C5' A A 74 1692 1694 1715 C5' G A 75 1714 1716 1738 C5' G A 76 1737 1739 1761 C5' C A 77 1760 1762 1781 C5' A A 78 1780 1782 1803 C5' G A 79 1802 1804 1826 C5' C A 80 1825 1827 1846 C5' C A 81 1845 1847 1866 C5' C A 82 1865 1867 1886 C5' C A 83 1885 1887 1906 C5' C A 84 1905 1907 1926 C5' G A 85 1925 1927 1949 C5' G A 86 1948 1950 1972 C5' U A 87 1971 1973 1992 C5' G A 88 1991 1993 2015 C5' G A 89 2014 2016 2038 C5' C A 90 2037 2039 2058 C5' U A 91 2057 2059 2078 C5' U A 92 2077 2079 2098 C5' U A 93 2097 2099 2118 C5' A A 94 2117 2119 2140 C5' A A 95 2139 2141 2162 C5' C A 96 2161 2163 2182 C5' G A 97 2181 2183 2205 C5' C A 98 2204 2206 2225 C5' C A 99 2224 2226 2245 C5' A A 100 2244 2246 2267 C5' A A 101 2266 2268 2289 C5' C A 102 2288 2290 2309 C5' G A 103 2308 2310 2332 C5' U A 104 2331 2333 2352 C5' U A 105 2351 2353 2372 C5' C A 106 2371 2373 2392 C5' U A 107 2391 2393 2412 C5' C A 108 2411 2413 2432 C5' A A 109 2431 2433 2454 C5' A A 110 2453 2455 2476 C5' C A 111 2475 2477 2496 C5' A A 112 2495 2497 2518 C5' A A 113 2517 2519 2540 C5' U A 114 2539 2541 2560 C5' A A 115 2559 2561 2582 C5' G A 116 2581 2583 2605 C5' U A 117 2604 2606 2625 C5' G A 118 2624 2626 2648 C5' A A 119 2647 2649 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P C A 200 distorted distorted 2 3 4 21 P C A 201 distorted distorted 9 22 23 24 41 P A A 202 distorted distorted 29 42 43 44 63 P G A 203 distorted distorted 49 64 65 66 86 P U A 204 distorted distorted 71 87 88 89 106 P C A 205 distorted distorted 94 107 108 109 126 P G A 1 distorted distorted 114 127 128 129 149 P G A 2 distorted distorted 134 150 151 152 172 P A A 3 distorted distorted 157 173 174 175 194 P A A 4 distorted distorted 180 195 196 197 216 P C A 5 distorted distorted 202 217 218 219 236 P A A 6 distorted distorted 224 237 238 239 258 P C A 7 distorted distorted 244 259 260 261 278 P U A 8 distorted distorted 266 279 280 281 298 P A A 9 distorted distorted 286 299 300 301 320 P U A 10 distorted distorted 306 321 322 323 340 P A A 11 distorted distorted 328 341 342 343 362 P C A 12 distorted distorted 348 363 364 365 382 P G A 13 distorted distorted 370 383 384 385 405 P A A 14 distorted distorted 390 406 407 408 427 P C A 15 distorted distorted 413 428 429 430 447 P U A 16 distorted distorted 435 448 449 450 467 P G A 17 distorted distorted 455 468 469 470 490 P G A 18 distorted distorted 475 491 492 493 513 P U A 19 distorted distorted 498 514 515 516 533 P A A 20 distorted distorted 521 534 535 536 555 P C A 21 distorted distorted 541 556 557 558 575 P C A 22 distorted distorted 563 576 577 578 595 P G A 23 distorted distorted 583 596 597 598 618 P U A 24 distorted distorted 603 619 620 621 638 P A A 25 distorted distorted 626 639 640 641 660 P A A 26 distorted distorted 646 661 662 663 682 P A A 27 distorted distorted 668 683 684 685 704 P A A 28 distorted distorted 690 705 706 707 726 P G A 29 distorted distorted 712 727 728 729 749 P A A 30 distorted distorted 734 750 751 752 771 P C A 31 distorted distorted 757 772 773 774 791 P A A 32 distorted distorted 779 792 793 794 813 P A A 33 distorted distorted 799 814 815 816 835 P A A 34 distorted distorted 821 836 837 838 857 P U A 35 distorted distorted 843 858 859 860 877 P C A 36 distorted distorted 865 878 879 880 897 P U A 37 distorted distorted 885 898 899 900 917 P G A 38 distorted distorted 905 918 919 920 940 P C A 39 distorted distorted 925 941 942 943 960 P C A 40 distorted distorted 948 961 962 963 980 P C A 41 distorted distorted 968 981 982 983 1000 P U A 42 distorted distorted 988 1001 1002 1003 1020 P C A 43 distorted distorted 1008 1021 1022 1023 1040 P A A 44 distorted distorted 1028 1041 1042 1043 1062 P G A 45 distorted distorted 1048 1063 1064 1065 1085 P A A 46 distorted distorted 1070 1086 1087 1088 1107 P G A 47 distorted distorted 1093 1108 1109 1110 1130 P C A 48 distorted distorted 1115 1131 1132 1133 1150 P U A 49 distorted distorted 1138 1151 1152 1153 1170 P U A 50 distorted distorted 1158 1171 1172 1173 1190 P G A 51 distorted distorted 1178 1191 1192 1193 1213 P A A 52 distorted distorted 1198 1214 1215 1216 1235 P G A 53 distorted distorted 1221 1236 1237 1238 1258 P A A 54 distorted distorted 1243 1259 1260 1261 1280 P A A 55 distorted distorted 1266 1281 1282 1283 1302 P C A 56 distorted distorted 1288 1303 1304 1305 1322 P A A 57 distorted distorted 1310 1323 1324 1325 1344 P U A 58 distorted distorted 1330 1345 1346 1347 1364 P C A 59 distorted distorted 1352 1365 1366 1367 1384 P U A 60 distorted distorted 1372 1385 1386 1387 1404 P U A 61 distorted distorted 1392 1405 1406 1407 1424 P C A 62 distorted distorted 1412 1425 1426 1427 1444 P G A 63 distorted distorted 1432 1445 1446 1447 1467 P G A 64 distorted distorted 1452 1468 1469 1470 1490 P A A 65 distorted distorted 1475 1491 1492 1493 1512 P U A 66 distorted distorted 1498 1513 1514 1515 1532 P G A 67 distorted distorted 1520 1533 1534 1535 1555 P C A 68 distorted distorted 1540 1556 1557 1558 1575 P A A 69 distorted distorted 1563 1576 1577 1578 1597 P G A 70 distorted distorted 1583 1598 1599 1600 1620 P G A 71 distorted distorted 1605 1621 1622 1623 1643 P G A 72 distorted distorted 1628 1644 1645 1646 1666 P G A 73 distorted distorted 1651 1667 1668 1669 1689 P A A 74 distorted distorted 1674 1690 1691 1692 1711 P G A 75 distorted distorted 1697 1712 1713 1714 1734 P G A 76 distorted distorted 1719 1735 1736 1737 1757 P C A 77 distorted distorted 1742 1758 1759 1760 1777 P A A 78 distorted distorted 1765 1778 1779 1780 1799 P G A 79 distorted distorted 1785 1800 1801 1802 1822 P C A 80 distorted distorted 1807 1823 1824 1825 1842 P C A 81 distorted distorted 1830 1843 1844 1845 1862 P C A 82 distorted distorted 1850 1863 1864 1865 1882 P C A 83 distorted distorted 1870 1883 1884 1885 1902 P C A 84 distorted distorted 1890 1903 1904 1905 1922 P G A 85 distorted distorted 1910 1923 1924 1925 1945 P G A 86 distorted distorted 1930 1946 1947 1948 1968 P U A 87 distorted distorted 1953 1969 1970 1971 1988 P G A 88 distorted distorted 1976 1989 1990 1991 2011 P G A 89 distorted distorted 1996 2012 2013 2014 2034 P C A 90 distorted distorted 2019 2035 2036 2037 2054 P U A 91 distorted distorted 2042 2055 2056 2057 2074 P U A 92 distorted distorted 2062 2075 2076 2077 2094 P U A 93 distorted distorted 2082 2095 2096 2097 2114 P A A 94 distorted distorted 2102 2115 2116 2117 2136 P A A 95 distorted distorted 2122 2137 2138 2139 2158 P C A 96 distorted distorted 2144 2159 2160 2161 2178 P G A 97 distorted distorted 2166 2179 2180 2181 2201 P C A 98 distorted distorted 2186 2202 2203 2204 2221 P C A 99 distorted distorted 2209 2222 2223 2224 2241 P A A 100 distorted distorted 2229 2242 2243 2244 2263 P A A 101 distorted distorted 2249 2264 2265 2266 2285 P C A 102 distorted distorted 2271 2286 2287 2288 2305 P G A 103 distorted distorted 2293 2306 2307 2308 2328 P U A 104 distorted distorted 2313 2329 2330 2331 2348 P U A 105 distorted distorted 2336 2349 2350 2351 2368 P C A 106 distorted distorted 2356 2369 2370 2371 2388 P U A 107 distorted distorted 2376 2389 2390 2391 2408 P C A 108 distorted distorted 2396 2409 2410 2411 2428 P A A 109 distorted distorted 2416 2429 2430 2431 2450 P A A 110 distorted distorted 2436 2451 2452 2453 2472 P C A 111 distorted distorted 2458 2473 2474 2475 2492 P A A 112 distorted distorted 2480 2493 2494 2495 2514 P A A 113 distorted distorted 2500 2515 2516 2517 2536 P U A 114 distorted distorted 2522 2537 2538 2539 2556 P A A 115 distorted distorted 2544 2557 2558 2559 2578 P G A 116 distorted distorted 2564 2579 2580 2581 2601 P U A 117 distorted distorted 2586 2602 2603 2604 2621 P G A 118 distorted distorted 2609 2622 2623 2624 2644 P A A 119 distorted distorted 2629 2645 2646 2647 ---------------------------------------------------------------------------------