ID code: '1L4R' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' U A 1 beta 7 13 10 32 C1' C A 2 beta 27 33 30 52 C1' A A 3 beta 47 53 50 74 C1' A A 4 beta 69 75 72 96 C1' U A 5 beta 91 97 94 116 C1' G A 6 beta 111 117 114 139 C1' G A 7 beta 134 140 137 162 C1' U A 8 beta 157 163 160 182 C1' A A 9 beta 177 183 180 204 C1' C A 10 beta 199 205 202 224 C1' G A 11 beta 219 225 222 247 C1' G A 12 beta 242 248 245 270 C1' U A 13 beta 265 271 268 290 C1' A A 14 beta 285 291 288 312 C1' C A 15 beta 307 313 310 332 C1' U A 16 beta 327 333 330 352 C1' U A 17 beta 347 353 350 372 C1' C A 18 beta 367 373 370 392 C1' C A 19 beta 387 393 390 412 C1' A A 20 beta 407 413 410 434 C1' U A 21 beta 429 435 432 454 C1' U A 22 beta 449 455 452 474 C1' G A 23 beta 469 475 472 497 C1' U A 24 beta 492 498 495 517 C1' C A 25 beta 512 518 515 537 C1' A A 26 beta 532 538 535 559 C1' U A 27 beta 554 560 557 579 C1' G A 28 beta 574 580 577 602 C1' U A 29 beta 597 603 600 622 C1' G A 30 beta 617 623 620 645 C1' U A 31 beta 640 646 643 665 C1' A A 32 beta 660 666 663 687 C1' U A 33 beta 682 688 685 707 C1' G A 34 beta 702 708 705 730 C1' U A 35 beta 725 731 728 750 C1' U A 36 beta 745 751 748 770 C1' G A 37 beta 765 771 768 793 C1' G A 38 beta 788 794 791 816 C1' G A 39 beta 811 817 814 839 C1' G A 40 beta 834 840 837 862 C1' A A 41 beta 857 863 860 884 C1' U A 42 beta 879 885 882 904 C1' U A 43 beta 899 905 902 924 C1' A A 44 beta 919 925 922 946 C1' A A 45 beta 941 947 944 968 C1' A A 46 beta 963 969 966 990 C1' C A 47 beta 985 991 988 1010 C1' C A 48 beta 1005 1011 1008 1030 C1' C A 49 beta 1025 1031 1028 1050 C1' U A 50 beta 1045 1051 1048 1070 C1' G A 51 beta 1065 1071 1068 1093 C1' A A 52 beta 1088 1094 1091 1115 C1' U A 53 beta 1110 1116 1113 1135 C1' U A 54 beta 1130 1136 1133 1155 C1' G A 55 beta 1150 1156 1153 1178 C1' A A 56 beta 1173 1179 1176 1200 C1' G A 57 beta 1195 1201 1198 1223 C1' U A 58 beta 1218 1224 1221 1243 C1' U A 59 beta 1238 1244 1241 1263 C1' C A 60 beta 1258 1264 1261 1283 C1' A A 61 beta 1278 1284 1281 1305 C1' G A 62 beta 1300 1306 1303 1328 C1' C A 63 beta 1323 1329 1326 1348 C1' C A 64 beta 1343 1349 1346 1368 C1' C A 65 beta 1363 1369 1366 1388 C1' A A 66 beta 1383 1389 1386 1410 C1' C A 67 beta 1405 1411 1408 1430 C1' A A 68 beta 1425 1431 1428 1452 C1' U A 69 beta 1447 1453 1450 1472 C1' A A 70 beta 1467 1473 1470 1494 C1' C A 71 beta 1489 1495 1492 1514 C1' U A 72 beta 1509 1515 1512 1534 C1' U A 73 beta 1529 1535 1532 1554 C1' U A 74 beta 1549 1555 1552 1574 C1' G A 75 beta 1569 1575 1572 1597 C1' U A 76 beta 1592 1598 1595 1617 C1' U A 77 beta 1612 1618 1615 1637 C1' G A 78 beta 1632 1638 1635 1660 C1' A A 79 beta 1655 1661 1658 1682 C1' U A 80 beta 1677 1683 1680 1702 C1' U A 81 beta 1697 1703 1700 1722 C1' G A 82 beta 1717 1723 1720 1745 C1' G A 83 beta 1740 1746 1743 1768 C1' U A 84 beta 1763 1769 1766 1788 C1' U A 85 beta 1783 1789 1786 1808 C1' G A 86 beta 1803 1809 1806 1831 C1' U A 87 beta 1826 1832 1829 1851 C1' C A 88 beta 1846 1852 1849 1871 C1' A A 89 beta 1866 1872 1869 1893 C1' A A 90 beta 1888 1894 1891 1915 C1' U A 91 beta 1910 1916 1913 1935 C1' C A 92 beta 1930 1936 1933 1955 C1' A A 93 beta 1950 1956 1953 1977 C1' U A 94 beta 1972 1978 1975 1997 C1' G A 95 beta 1992 1998 1995 2020 C1' G A 96 beta 2015 2021 2018 2043 C1' C A 97 beta 2038 2044 2041 2063 C1' A A 98 beta 2058 2064 2061 2085 C1' A A 99 beta 2080 2086 2083 2107 C1' A A 100 beta 2102 2108 2105 2129 C1' A A 101 beta 2124 2130 2127 2151 C1' G A 102 beta 2146 2152 2149 2174 C1' U A 103 beta 2169 2175 2172 2194 C1' G A 104 beta 2189 2195 2192 2217 C1' C A 105 beta 2212 2218 2215 2237 C1' A A 106 beta 2232 2238 2235 2259 C1' C A 107 beta 2254 2260 2257 2279 C1' G A 108 beta 2274 2280 2277 2302 C1' C A 109 beta 2297 2303 2300 2322 C1' U A 110 beta 2317 2323 2320 2342 C1' A A 111 beta 2337 2343 2340 2364 C1' C A 112 beta 2359 2365 2362 2384 C1' U A 113 beta 2379 2385 2382 2404 C1' U A 114 beta 2399 2405 2402 2424 C1' U A 115 beta 2419 2425 2422 2444 C1' G A 116 beta 2439 2445 2442 2467 C1' A A 117 beta 2462 2468 2465 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' U A 1 OK 12 8 11 30 C2' C A 2 OK 32 28 31 50 C2' A A 3 OK 52 48 51 72 C2' A A 4 OK 74 70 73 94 C2' U A 5 OK 96 92 95 114 C2' G A 6 OK 116 112 115 137 C2' G A 7 OK 139 135 138 160 C2' U A 8 OK 162 158 161 180 C2' A A 9 OK 182 178 181 202 C2' C A 10 OK 204 200 203 222 C2' G A 11 OK 224 220 223 245 C2' G A 12 OK 247 243 246 268 C2' U A 13 OK 270 266 269 288 C2' A A 14 OK 290 286 289 310 C2' C A 15 OK 312 308 311 330 C2' U A 16 OK 332 328 331 350 C2' U A 17 OK 352 348 351 370 C2' C A 18 OK 372 368 371 390 C2' C A 19 OK 392 388 391 410 C2' A A 20 OK 412 408 411 432 C2' U A 21 OK 434 430 433 452 C2' U A 22 OK 454 450 453 472 C2' G A 23 OK 474 470 473 495 C2' U A 24 OK 497 493 496 515 C2' C A 25 OK 517 513 516 535 C2' A A 26 OK 537 533 536 557 C2' U A 27 OK 559 555 558 577 C2' G A 28 OK 579 575 578 600 C2' U A 29 OK 602 598 601 620 C2' G A 30 OK 622 618 621 643 C2' U A 31 OK 645 641 644 663 C2' A A 32 OK 665 661 664 685 C2' U A 33 OK 687 683 686 705 C2' G A 34 OK 707 703 706 728 C2' U A 35 OK 730 726 729 748 C2' U A 36 OK 750 746 749 768 C2' G A 37 OK 770 766 769 791 C2' G A 38 OK 793 789 792 814 C2' G A 39 OK 816 812 815 837 C2' G A 40 OK 839 835 838 860 C2' A A 41 OK 862 858 861 882 C2' U A 42 OK 884 880 883 902 C2' U A 43 OK 904 900 903 922 C2' A A 44 OK 924 920 923 944 C2' A A 45 OK 946 942 945 966 C2' A A 46 OK 968 964 967 988 C2' C A 47 OK 990 986 989 1008 C2' C A 48 OK 1010 1006 1009 1028 C2' C A 49 OK 1030 1026 1029 1048 C2' U A 50 OK 1050 1046 1049 1068 C2' G A 51 OK 1070 1066 1069 1091 C2' A A 52 OK 1093 1089 1092 1113 C2' U A 53 OK 1115 1111 1114 1133 C2' U A 54 OK 1135 1131 1134 1153 C2' G A 55 OK 1155 1151 1154 1176 C2' A A 56 OK 1178 1174 1177 1198 C2' G A 57 OK 1200 1196 1199 1221 C2' U A 58 OK 1223 1219 1222 1241 C2' U A 59 OK 1243 1239 1242 1261 C2' C A 60 OK 1263 1259 1262 1281 C2' A A 61 OK 1283 1279 1282 1303 C2' G A 62 OK 1305 1301 1304 1326 C2' C A 63 OK 1328 1324 1327 1346 C2' C A 64 OK 1348 1344 1347 1366 C2' C A 65 OK 1368 1364 1367 1386 C2' A A 66 OK 1388 1384 1387 1408 C2' C A 67 OK 1410 1406 1409 1428 C2' A A 68 OK 1430 1426 1429 1450 C2' U A 69 OK 1452 1448 1451 1470 C2' A A 70 OK 1472 1468 1471 1492 C2' C A 71 OK 1494 1490 1493 1512 C2' U A 72 OK 1514 1510 1513 1532 C2' U A 73 OK 1534 1530 1533 1552 C2' U A 74 OK 1554 1550 1553 1572 C2' G A 75 OK 1574 1570 1573 1595 C2' U A 76 OK 1597 1593 1596 1615 C2' U A 77 OK 1617 1613 1616 1635 C2' G A 78 OK 1637 1633 1636 1658 C2' A A 79 OK 1660 1656 1659 1680 C2' U A 80 OK 1682 1678 1681 1700 C2' U A 81 OK 1702 1698 1701 1720 C2' G A 82 OK 1722 1718 1721 1743 C2' G A 83 OK 1745 1741 1744 1766 C2' U A 84 OK 1768 1764 1767 1786 C2' U A 85 OK 1788 1784 1787 1806 C2' G A 86 OK 1808 1804 1807 1829 C2' U A 87 OK 1831 1827 1830 1849 C2' C A 88 OK 1851 1847 1850 1869 C2' A A 89 OK 1871 1867 1870 1891 C2' A A 90 OK 1893 1889 1892 1913 C2' U A 91 OK 1915 1911 1914 1933 C2' C A 92 OK 1935 1931 1934 1953 C2' A A 93 OK 1955 1951 1954 1975 C2' U A 94 OK 1977 1973 1976 1995 C2' G A 95 OK 1997 1993 1996 2018 C2' G A 96 OK 2020 2016 2019 2041 C2' C A 97 OK 2043 2039 2042 2061 C2' A A 98 OK 2063 2059 2062 2083 C2' A A 99 OK 2085 2081 2084 2105 C2' A A 100 OK 2107 2103 2106 2127 C2' A A 101 OK 2129 2125 2128 2149 C2' G A 102 OK 2151 2147 2150 2172 C2' U A 103 OK 2174 2170 2173 2192 C2' G A 104 OK 2194 2190 2193 2215 C2' C A 105 OK 2217 2213 2216 2235 C2' A A 106 OK 2237 2233 2236 2257 C2' C A 107 OK 2259 2255 2258 2277 C2' G A 108 OK 2279 2275 2278 2300 C2' C A 109 OK 2302 2298 2301 2320 C2' U A 110 OK 2322 2318 2321 2340 C2' A A 111 OK 2342 2338 2341 2362 C2' C A 112 OK 2364 2360 2363 2382 C2' U A 113 OK 2384 2380 2383 2402 C2' U A 114 OK 2404 2400 2403 2422 C2' U A 115 OK 2424 2420 2423 2442 C2' G A 116 OK 2444 2440 2443 2465 C2' A A 117 OK 2467 2463 2466 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' U A 1 OK 6 9 10 28 C3' C A 2 OK 26 29 30 48 C3' A A 3 OK 46 49 50 70 C3' A A 4 OK 68 71 72 92 C3' U A 5 OK 90 93 94 112 C3' G A 6 OK 110 113 114 135 C3' G A 7 OK 133 136 137 158 C3' U A 8 OK 156 159 160 178 C3' A A 9 OK 176 179 180 200 C3' C A 10 OK 198 201 202 220 C3' G A 11 OK 218 221 222 243 C3' G A 12 OK 241 244 245 266 C3' U A 13 OK 264 267 268 286 C3' A A 14 OK 284 287 288 308 C3' C A 15 OK 306 309 310 328 C3' U A 16 OK 326 329 330 348 C3' U A 17 OK 346 349 350 368 C3' C A 18 OK 366 369 370 388 C3' C A 19 OK 386 389 390 408 C3' A A 20 OK 406 409 410 430 C3' U A 21 OK 428 431 432 450 C3' U A 22 OK 448 451 452 470 C3' G A 23 OK 468 471 472 493 C3' U A 24 OK 491 494 495 513 C3' C A 25 OK 511 514 515 533 C3' A A 26 OK 531 534 535 555 C3' U A 27 OK 553 556 557 575 C3' G A 28 OK 573 576 577 598 C3' U A 29 OK 596 599 600 618 C3' G A 30 OK 616 619 620 641 C3' U A 31 OK 639 642 643 661 C3' A A 32 OK 659 662 663 683 C3' U A 33 OK 681 684 685 703 C3' G A 34 OK 701 704 705 726 C3' U A 35 OK 724 727 728 746 C3' U A 36 OK 744 747 748 766 C3' G A 37 OK 764 767 768 789 C3' G A 38 OK 787 790 791 812 C3' G A 39 OK 810 813 814 835 C3' G A 40 OK 833 836 837 858 C3' A A 41 OK 856 859 860 880 C3' U A 42 OK 878 881 882 900 C3' U A 43 OK 898 901 902 920 C3' A A 44 OK 918 921 922 942 C3' A A 45 OK 940 943 944 964 C3' A A 46 OK 962 965 966 986 C3' C A 47 OK 984 987 988 1006 C3' C A 48 OK 1004 1007 1008 1026 C3' C A 49 OK 1024 1027 1028 1046 C3' U A 50 OK 1044 1047 1048 1066 C3' G A 51 OK 1064 1067 1068 1089 C3' A A 52 OK 1087 1090 1091 1111 C3' U A 53 OK 1109 1112 1113 1131 C3' U A 54 OK 1129 1132 1133 1151 C3' G A 55 OK 1149 1152 1153 1174 C3' A A 56 OK 1172 1175 1176 1196 C3' G A 57 OK 1194 1197 1198 1219 C3' U A 58 OK 1217 1220 1221 1239 C3' U A 59 OK 1237 1240 1241 1259 C3' C A 60 OK 1257 1260 1261 1279 C3' A A 61 OK 1277 1280 1281 1301 C3' G A 62 OK 1299 1302 1303 1324 C3' C A 63 OK 1322 1325 1326 1344 C3' C A 64 OK 1342 1345 1346 1364 C3' C A 65 OK 1362 1365 1366 1384 C3' A A 66 OK 1382 1385 1386 1406 C3' C A 67 OK 1404 1407 1408 1426 C3' A A 68 OK 1424 1427 1428 1448 C3' U A 69 OK 1446 1449 1450 1468 C3' A A 70 OK 1466 1469 1470 1490 C3' C A 71 OK 1488 1491 1492 1510 C3' U A 72 OK 1508 1511 1512 1530 C3' U A 73 OK 1528 1531 1532 1550 C3' U A 74 OK 1548 1551 1552 1570 C3' G A 75 OK 1568 1571 1572 1593 C3' U A 76 OK 1591 1594 1595 1613 C3' U A 77 OK 1611 1614 1615 1633 C3' G A 78 OK 1631 1634 1635 1656 C3' A A 79 OK 1654 1657 1658 1678 C3' U A 80 OK 1676 1679 1680 1698 C3' U A 81 OK 1696 1699 1700 1718 C3' G A 82 OK 1716 1719 1720 1741 C3' G A 83 OK 1739 1742 1743 1764 C3' U A 84 OK 1762 1765 1766 1784 C3' U A 85 OK 1782 1785 1786 1804 C3' G A 86 OK 1802 1805 1806 1827 C3' U A 87 OK 1825 1828 1829 1847 C3' C A 88 OK 1845 1848 1849 1867 C3' A A 89 OK 1865 1868 1869 1889 C3' A A 90 OK 1887 1890 1891 1911 C3' U A 91 OK 1909 1912 1913 1931 C3' C A 92 OK 1929 1932 1933 1951 C3' A A 93 OK 1949 1952 1953 1973 C3' U A 94 OK 1971 1974 1975 1993 C3' G A 95 OK 1991 1994 1995 2016 C3' G A 96 OK 2014 2017 2018 2039 C3' C A 97 OK 2037 2040 2041 2059 C3' A A 98 OK 2057 2060 2061 2081 C3' A A 99 OK 2079 2082 2083 2103 C3' A A 100 OK 2101 2104 2105 2125 C3' A A 101 OK 2123 2126 2127 2147 C3' G A 102 OK 2145 2148 2149 2170 C3' U A 103 OK 2168 2171 2172 2190 C3' G A 104 OK 2188 2191 2192 2213 C3' C A 105 OK 2211 2214 2215 2233 C3' A A 106 OK 2231 2234 2235 2255 C3' C A 107 OK 2253 2256 2257 2275 C3' G A 108 OK 2273 2276 2277 2298 C3' C A 109 OK 2296 2299 2300 2318 C3' U A 110 OK 2316 2319 2320 2338 C3' A A 111 OK 2336 2339 2340 2360 C3' C A 112 OK 2358 2361 2362 2380 C3' U A 113 OK 2378 2381 2382 2400 C3' U A 114 OK 2398 2401 2402 2420 C3' U A 115 OK 2418 2421 2422 2440 C3' G A 116 OK 2438 2441 2442 2463 C3' A A 117 OK 2461 2464 2465 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' U A 1 OK 8 5 7 26 C4' C A 2 OK 28 25 27 46 C4' A A 3 OK 48 45 47 68 C4' A A 4 OK 70 67 69 90 C4' U A 5 OK 92 89 91 110 C4' G A 6 OK 112 109 111 133 C4' G A 7 OK 135 132 134 156 C4' U A 8 OK 158 155 157 176 C4' A A 9 OK 178 175 177 198 C4' C A 10 OK 200 197 199 218 C4' G A 11 OK 220 217 219 241 C4' G A 12 OK 243 240 242 264 C4' U A 13 OK 266 263 265 284 C4' A A 14 OK 286 283 285 306 C4' C A 15 OK 308 305 307 326 C4' U A 16 OK 328 325 327 346 C4' U A 17 OK 348 345 347 366 C4' C A 18 OK 368 365 367 386 C4' C A 19 OK 388 385 387 406 C4' A A 20 OK 408 405 407 428 C4' U A 21 OK 430 427 429 448 C4' U A 22 OK 450 447 449 468 C4' G A 23 OK 470 467 469 491 C4' U A 24 OK 493 490 492 511 C4' C A 25 OK 513 510 512 531 C4' A A 26 OK 533 530 532 553 C4' U A 27 OK 555 552 554 573 C4' G A 28 OK 575 572 574 596 C4' U A 29 OK 598 595 597 616 C4' G A 30 OK 618 615 617 639 C4' U A 31 OK 641 638 640 659 C4' A A 32 OK 661 658 660 681 C4' U A 33 OK 683 680 682 701 C4' G A 34 OK 703 700 702 724 C4' U A 35 OK 726 723 725 744 C4' U A 36 OK 746 743 745 764 C4' G A 37 OK 766 763 765 787 C4' G A 38 OK 789 786 788 810 C4' G A 39 OK 812 809 811 833 C4' G A 40 OK 835 832 834 856 C4' A A 41 OK 858 855 857 878 C4' U A 42 OK 880 877 879 898 C4' U A 43 OK 900 897 899 918 C4' A A 44 OK 920 917 919 940 C4' A A 45 OK 942 939 941 962 C4' A A 46 OK 964 961 963 984 C4' C A 47 OK 986 983 985 1004 C4' C A 48 OK 1006 1003 1005 1024 C4' C A 49 OK 1026 1023 1025 1044 C4' U A 50 OK 1046 1043 1045 1064 C4' G A 51 OK 1066 1063 1065 1087 C4' A A 52 OK 1089 1086 1088 1109 C4' U A 53 OK 1111 1108 1110 1129 C4' U A 54 OK 1131 1128 1130 1149 C4' G A 55 OK 1151 1148 1150 1172 C4' A A 56 OK 1174 1171 1173 1194 C4' G A 57 OK 1196 1193 1195 1217 C4' U A 58 OK 1219 1216 1218 1237 C4' U A 59 OK 1239 1236 1238 1257 C4' C A 60 OK 1259 1256 1258 1277 C4' A A 61 OK 1279 1276 1278 1299 C4' G A 62 OK 1301 1298 1300 1322 C4' C A 63 OK 1324 1321 1323 1342 C4' C A 64 OK 1344 1341 1343 1362 C4' C A 65 OK 1364 1361 1363 1382 C4' A A 66 OK 1384 1381 1383 1404 C4' C A 67 OK 1406 1403 1405 1424 C4' A A 68 OK 1426 1423 1425 1446 C4' U A 69 OK 1448 1445 1447 1466 C4' A A 70 OK 1468 1465 1467 1488 C4' C A 71 OK 1490 1487 1489 1508 C4' U A 72 OK 1510 1507 1509 1528 C4' U A 73 OK 1530 1527 1529 1548 C4' U A 74 OK 1550 1547 1549 1568 C4' G A 75 OK 1570 1567 1569 1591 C4' U A 76 OK 1593 1590 1592 1611 C4' U A 77 OK 1613 1610 1612 1631 C4' G A 78 OK 1633 1630 1632 1654 C4' A A 79 OK 1656 1653 1655 1676 C4' U A 80 OK 1678 1675 1677 1696 C4' U A 81 OK 1698 1695 1697 1716 C4' G A 82 OK 1718 1715 1717 1739 C4' G A 83 OK 1741 1738 1740 1762 C4' U A 84 OK 1764 1761 1763 1782 C4' U A 85 OK 1784 1781 1783 1802 C4' G A 86 OK 1804 1801 1803 1825 C4' U A 87 OK 1827 1824 1826 1845 C4' C A 88 OK 1847 1844 1846 1865 C4' A A 89 OK 1867 1864 1866 1887 C4' A A 90 OK 1889 1886 1888 1909 C4' U A 91 OK 1911 1908 1910 1929 C4' C A 92 OK 1931 1928 1930 1949 C4' A A 93 OK 1951 1948 1950 1971 C4' U A 94 OK 1973 1970 1972 1991 C4' G A 95 OK 1993 1990 1992 2014 C4' G A 96 OK 2016 2013 2015 2037 C4' C A 97 OK 2039 2036 2038 2057 C4' A A 98 OK 2059 2056 2058 2079 C4' A A 99 OK 2081 2078 2080 2101 C4' A A 100 OK 2103 2100 2102 2123 C4' A A 101 OK 2125 2122 2124 2145 C4' G A 102 OK 2147 2144 2146 2168 C4' U A 103 OK 2170 2167 2169 2188 C4' G A 104 OK 2190 2187 2189 2211 C4' C A 105 OK 2213 2210 2212 2231 C4' A A 106 OK 2233 2230 2232 2253 C4' C A 107 OK 2255 2252 2254 2273 C4' G A 108 OK 2275 2272 2274 2296 C4' C A 109 OK 2298 2295 2297 2316 C4' U A 110 OK 2318 2315 2317 2336 C4' A A 111 OK 2338 2335 2337 2358 C4' C A 112 OK 2360 2357 2359 2378 C4' U A 113 OK 2380 2377 2379 2398 C4' U A 114 OK 2400 2397 2399 2418 C4' U A 115 OK 2420 2417 2419 2438 C4' G A 116 OK 2440 2437 2439 2461 C4' A A 117 OK 2463 2460 2462 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' U A 1 4 6 25 C5' C A 2 24 26 45 C5' A A 3 44 46 67 C5' A A 4 66 68 89 C5' U A 5 88 90 109 C5' G A 6 108 110 132 C5' G A 7 131 133 155 C5' U A 8 154 156 175 C5' A A 9 174 176 197 C5' C A 10 196 198 217 C5' G A 11 216 218 240 C5' G A 12 239 241 263 C5' U A 13 262 264 283 C5' A A 14 282 284 305 C5' C A 15 304 306 325 C5' U A 16 324 326 345 C5' U A 17 344 346 365 C5' C A 18 364 366 385 C5' C A 19 384 386 405 C5' A A 20 404 406 427 C5' U A 21 426 428 447 C5' U A 22 446 448 467 C5' G A 23 466 468 490 C5' U A 24 489 491 510 C5' C A 25 509 511 530 C5' A A 26 529 531 552 C5' U A 27 551 553 572 C5' G A 28 571 573 595 C5' U A 29 594 596 615 C5' G A 30 614 616 638 C5' U A 31 637 639 658 C5' A A 32 657 659 680 C5' U A 33 679 681 700 C5' G A 34 699 701 723 C5' U A 35 722 724 743 C5' U A 36 742 744 763 C5' G A 37 762 764 786 C5' G A 38 785 787 809 C5' G A 39 808 810 832 C5' G A 40 831 833 855 C5' A A 41 854 856 877 C5' U A 42 876 878 897 C5' U A 43 896 898 917 C5' A A 44 916 918 939 C5' A A 45 938 940 961 C5' A A 46 960 962 983 C5' C A 47 982 984 1003 C5' C A 48 1002 1004 1023 C5' C A 49 1022 1024 1043 C5' U A 50 1042 1044 1063 C5' G A 51 1062 1064 1086 C5' A A 52 1085 1087 1108 C5' U A 53 1107 1109 1128 C5' U A 54 1127 1129 1148 C5' G A 55 1147 1149 1171 C5' A A 56 1170 1172 1193 C5' G A 57 1192 1194 1216 C5' U A 58 1215 1217 1236 C5' U A 59 1235 1237 1256 C5' C A 60 1255 1257 1276 C5' A A 61 1275 1277 1298 C5' G A 62 1297 1299 1321 C5' C A 63 1320 1322 1341 C5' C A 64 1340 1342 1361 C5' C A 65 1360 1362 1381 C5' A A 66 1380 1382 1403 C5' C A 67 1402 1404 1423 C5' A A 68 1422 1424 1445 C5' U A 69 1444 1446 1465 C5' A A 70 1464 1466 1487 C5' C A 71 1486 1488 1507 C5' U A 72 1506 1508 1527 C5' U A 73 1526 1528 1547 C5' U A 74 1546 1548 1567 C5' G A 75 1566 1568 1590 C5' U A 76 1589 1591 1610 C5' U A 77 1609 1611 1630 C5' G A 78 1629 1631 1653 C5' A A 79 1652 1654 1675 C5' U A 80 1674 1676 1695 C5' U A 81 1694 1696 1715 C5' G A 82 1714 1716 1738 C5' G A 83 1737 1739 1761 C5' U A 84 1760 1762 1781 C5' U A 85 1780 1782 1801 C5' G A 86 1800 1802 1824 C5' U A 87 1823 1825 1844 C5' C A 88 1843 1845 1864 C5' A A 89 1863 1865 1886 C5' A A 90 1885 1887 1908 C5' U A 91 1907 1909 1928 C5' C A 92 1927 1929 1948 C5' A A 93 1947 1949 1970 C5' U A 94 1969 1971 1990 C5' G A 95 1989 1991 2013 C5' G A 96 2012 2014 2036 C5' C A 97 2035 2037 2056 C5' A A 98 2055 2057 2078 C5' A A 99 2077 2079 2100 C5' A A 100 2099 2101 2122 C5' A A 101 2121 2123 2144 C5' G A 102 2143 2145 2167 C5' U A 103 2166 2168 2187 C5' G A 104 2186 2188 2210 C5' C A 105 2209 2211 2230 C5' A A 106 2229 2231 2252 C5' C A 107 2251 2253 2272 C5' G A 108 2271 2273 2295 C5' C A 109 2294 2296 2315 C5' U A 110 2314 2316 2335 C5' A A 111 2334 2336 2357 C5' C A 112 2356 2358 2377 C5' U A 113 2376 2378 2397 C5' U A 114 2396 2398 2417 C5' U A 115 2416 2418 2437 C5' G A 116 2436 2438 2460 C5' A A 117 2459 2461 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P U A 1 distorted distorted 2 3 4 21 P C A 2 distorted distorted 9 22 23 24 41 P A A 3 distorted distorted 29 42 43 44 63 P A A 4 distorted distorted 49 64 65 66 85 P U A 5 distorted distorted 71 86 87 88 105 P G A 6 distorted distorted 93 106 107 108 128 P G A 7 distorted distorted 113 129 130 131 151 P U A 8 distorted distorted 136 152 153 154 171 P A A 9 distorted distorted 159 172 173 174 193 P C A 10 distorted distorted 179 194 195 196 213 P G A 11 distorted distorted 201 214 215 216 236 P G A 12 distorted distorted 221 237 238 239 259 P U A 13 distorted distorted 244 260 261 262 279 P A A 14 distorted distorted 267 280 281 282 301 P C A 15 distorted distorted 287 302 303 304 321 P U A 16 distorted distorted 309 322 323 324 341 P U A 17 distorted distorted 329 342 343 344 361 P C A 18 distorted distorted 349 362 363 364 381 P C A 19 distorted distorted 369 382 383 384 401 P A A 20 distorted distorted 389 402 403 404 423 P U A 21 distorted distorted 409 424 425 426 443 P U A 22 distorted distorted 431 444 445 446 463 P G A 23 distorted distorted 451 464 465 466 486 P U A 24 distorted distorted 471 487 488 489 506 P C A 25 distorted distorted 494 507 508 509 526 P A A 26 distorted distorted 514 527 528 529 548 P U A 27 distorted distorted 534 549 550 551 568 P G A 28 distorted distorted 556 569 570 571 591 P U A 29 distorted distorted 576 592 593 594 611 P G A 30 distorted distorted 599 612 613 614 634 P U A 31 distorted distorted 619 635 636 637 654 P A A 32 distorted distorted 642 655 656 657 676 P U A 33 distorted distorted 662 677 678 679 696 P G A 34 distorted distorted 684 697 698 699 719 P U A 35 distorted distorted 704 720 721 722 739 P U A 36 distorted distorted 727 740 741 742 759 P G A 37 distorted distorted 747 760 761 762 782 P G A 38 distorted distorted 767 783 784 785 805 P G A 39 distorted distorted 790 806 807 808 828 P G A 40 distorted distorted 813 829 830 831 851 P A A 41 distorted distorted 836 852 853 854 873 P U A 42 distorted distorted 859 874 875 876 893 P U A 43 distorted distorted 881 894 895 896 913 P A A 44 distorted distorted 901 914 915 916 935 P A A 45 distorted distorted 921 936 937 938 957 P A A 46 distorted distorted 943 958 959 960 979 P C A 47 distorted distorted 965 980 981 982 999 P C A 48 distorted distorted 987 1000 1001 1002 1019 P C A 49 distorted distorted 1007 1020 1021 1022 1039 P U A 50 distorted distorted 1027 1040 1041 1042 1059 P G A 51 distorted distorted 1047 1060 1061 1062 1082 P A A 52 distorted distorted 1067 1083 1084 1085 1104 P U A 53 distorted distorted 1090 1105 1106 1107 1124 P U A 54 distorted distorted 1112 1125 1126 1127 1144 P G A 55 distorted distorted 1132 1145 1146 1147 1167 P A A 56 distorted distorted 1152 1168 1169 1170 1189 P G A 57 distorted distorted 1175 1190 1191 1192 1212 P U A 58 distorted distorted 1197 1213 1214 1215 1232 P U A 59 distorted distorted 1220 1233 1234 1235 1252 P C A 60 distorted distorted 1240 1253 1254 1255 1272 P A A 61 distorted distorted 1260 1273 1274 1275 1294 P G A 62 distorted distorted 1280 1295 1296 1297 1317 P C A 63 distorted distorted 1302 1318 1319 1320 1337 P C A 64 distorted distorted 1325 1338 1339 1340 1357 P C A 65 distorted distorted 1345 1358 1359 1360 1377 P A A 66 distorted distorted 1365 1378 1379 1380 1399 P C A 67 distorted distorted 1385 1400 1401 1402 1419 P A A 68 distorted distorted 1407 1420 1421 1422 1441 P U A 69 distorted distorted 1427 1442 1443 1444 1461 P A A 70 distorted distorted 1449 1462 1463 1464 1483 P C A 71 distorted distorted 1469 1484 1485 1486 1503 P U A 72 distorted distorted 1491 1504 1505 1506 1523 P U A 73 distorted distorted 1511 1524 1525 1526 1543 P U A 74 distorted distorted 1531 1544 1545 1546 1563 P G A 75 distorted distorted 1551 1564 1565 1566 1586 P U A 76 distorted distorted 1571 1587 1588 1589 1606 P U A 77 distorted distorted 1594 1607 1608 1609 1626 P G A 78 distorted distorted 1614 1627 1628 1629 1649 P A A 79 distorted distorted 1634 1650 1651 1652 1671 P U A 80 distorted distorted 1657 1672 1673 1674 1691 P U A 81 distorted distorted 1679 1692 1693 1694 1711 P G A 82 distorted distorted 1699 1712 1713 1714 1734 P G A 83 distorted distorted 1719 1735 1736 1737 1757 P U A 84 distorted distorted 1742 1758 1759 1760 1777 P U A 85 distorted distorted 1765 1778 1779 1780 1797 P G A 86 distorted distorted 1785 1798 1799 1800 1820 P U A 87 distorted distorted 1805 1821 1822 1823 1840 P C A 88 distorted distorted 1828 1841 1842 1843 1860 P A A 89 distorted distorted 1848 1861 1862 1863 1882 P A A 90 distorted distorted 1868 1883 1884 1885 1904 P U A 91 distorted distorted 1890 1905 1906 1907 1924 P C A 92 distorted distorted 1912 1925 1926 1927 1944 P A A 93 distorted distorted 1932 1945 1946 1947 1966 P U A 94 distorted distorted 1952 1967 1968 1969 1986 P G A 95 distorted distorted 1974 1987 1988 1989 2009 P G A 96 distorted distorted 1994 2010 2011 2012 2032 P C A 97 distorted distorted 2017 2033 2034 2035 2052 P A A 98 distorted distorted 2040 2053 2054 2055 2074 P A A 99 distorted distorted 2060 2075 2076 2077 2096 P A A 100 distorted distorted 2082 2097 2098 2099 2118 P A A 101 distorted distorted 2104 2119 2120 2121 2140 P G A 102 distorted distorted 2126 2141 2142 2143 2163 P U A 103 distorted distorted 2148 2164 2165 2166 2183 P G A 104 distorted distorted 2171 2184 2185 2186 2206 P C A 105 distorted distorted 2191 2207 2208 2209 2226 P A A 106 distorted distorted 2214 2227 2228 2229 2248 P C A 107 distorted distorted 2234 2249 2250 2251 2268 P G A 108 distorted distorted 2256 2269 2270 2271 2291 P C A 109 distorted distorted 2276 2292 2293 2294 2311 P U A 110 distorted distorted 2299 2312 2313 2314 2331 P A A 111 distorted distorted 2319 2332 2333 2334 2353 P C A 112 distorted distorted 2339 2354 2355 2356 2373 P U A 113 distorted distorted 2361 2374 2375 2376 2393 P U A 114 distorted distorted 2381 2394 2395 2396 2413 P U A 115 distorted distorted 2401 2414 2415 2416 2433 P G A 116 distorted distorted 2421 2434 2435 2436 2456 P A A 117 distorted distorted 2441 2457 2458 2459 ---------------------------------------------------------------------------------