ID code: '1IPT' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 12 C1' U A 2 beta 7 13 10 32 C1' C A 3 beta 27 33 30 52 C1' U A 4 beta 47 53 50 72 C1' C A 5 beta 67 73 70 92 C1' U A 6 beta 87 93 90 113 C1' U B 15 beta 108 114 111 133 C1' A B 16 beta 128 134 131 155 C1' C B 17 beta 150 156 153 175 C1' C B 18 beta 170 176 173 195 C1' U B 19 beta 190 196 193 215 C1' U B 20 beta 210 216 213 235 C1' U B 21 beta 230 236 233 255 C1' G B 22 beta 250 256 253 278 C1' G B 23 beta 273 279 276 301 C1' A B 24 beta 296 302 299 323 C1' G B 25 beta 318 324 321 346 C1' G B 26 beta 341 347 344 369 C1' A B 28 beta 364 370 367 392 C1' G C 96 beta 387 393 390 415 C1' A C 97 beta 410 416 413 437 C1' C C 98 beta 432 438 435 457 C1' C C 99 beta 452 458 455 477 C1' G C 100 beta 472 478 475 500 C1' U C 101 beta 495 501 498 520 C1' C C 102 beta 515 521 518 540 C1' A C 103 beta 535 541 538 562 C1' A C 104 beta 557 563 560 584 C1' A C 105 beta 579 585 582 606 C1' U C 106 beta 601 607 604 626 C1' U C 107 beta 621 627 624 646 C1' G C 108 beta 641 647 644 669 C1' C C 109 beta 664 670 667 689 C1' G C 110 beta 684 690 687 712 C1' G C 111 beta 707 713 710 735 C1' G C 112 beta 730 736 733 758 C1' A C 113 beta 753 759 756 780 C1' A C 114 beta 775 781 778 802 C1' A C 115 beta 797 803 800 824 C1' G C 116 beta 819 825 822 847 C1' G C 117 beta 842 848 845 871 C1' C D 204 beta 866 872 869 891 C1' U D 205 beta 886 892 889 911 C1' A D 206 beta 906 912 909 933 C1' A D 207 beta 928 934 931 955 C1' C D 208 beta 950 956 953 975 C1' C D 209 beta 970 976 973 995 C1' A D 210 beta 990 996 993 1017 C1' C D 211 beta 1012 1018 1015 1037 C1' G D 212 beta 1032 1038 1035 1060 C1' C D 213 beta 1055 1061 1058 1080 C1' A D 214 beta 1075 1081 1078 1102 C1' G D 215 beta 1097 1103 1100 1125 C1' C D 216 beta 1120 1126 1123 1145 C1' C D 217 beta 1140 1146 1143 1165 C1' A D 218 beta 1160 1166 1163 1187 C1' A D 219 beta 1182 1188 1185 1209 C1' G D 220 beta 1204 1210 1207 1232 C1' U D 221 beta 1227 1233 1230 1253 C1' A E 252 beta 1248 1254 1251 1275 C1' U E 253 beta 1270 1276 1273 1295 C1' G E 254 beta 1290 1296 1293 1318 C1' C E 255 beta 1313 1319 1316 1338 C1' A E 256 beta 1333 1339 1336 1360 C1' G E 257 beta 1355 1361 1358 1383 C1' U E 258 beta 1378 1384 1381 1403 C1' U E 259 beta 1398 1404 1401 1423 C1' C E 260 beta 1418 1424 1421 1443 C1' A E 261 beta 1438 1444 1441 1465 C1' C E 262 beta 1460 1466 1463 1485 C1' A E 263 beta 1480 1486 1483 1507 C1' G E 264 beta 1502 1508 1505 1530 C1' A E 265 beta 1525 1531 1528 1552 C1' C E 266 beta 1547 1553 1550 1572 C1' U E 267 beta 1567 1573 1570 1592 C1' A E 268 beta 1587 1593 1590 1614 C1' A E 269 beta 1609 1615 1612 1636 C1' A E 270 beta 1631 1637 1634 1658 C1' U E 271 beta 1653 1659 1656 1678 C1' G E 272 beta 1673 1679 1676 1701 C1' U E 273 beta 1696 1702 1699 1721 C1' C E 274 beta 1716 1722 1719 1741 C1' G E 275 beta 1736 1742 1739 1764 C1' G E 276 beta 1759 1765 1762 1787 C1' U E 277 beta 1782 1788 1785 1807 C1' C E 278 beta 1802 1808 1805 1827 C1' G E 279 beta 1822 1828 1825 1850 C1' G E 280 beta 1845 1851 1848 1873 C1' G E 281 beta 1868 1874 1871 1896 C1' G E 282 beta 1891 1897 1894 1920 C1' C F 296 beta 1915 1921 1918 1940 C1' U F 297 beta 1935 1941 1938 1960 C1' C F 298 beta 1955 1961 1958 1980 C1' A F 299 beta 1975 1981 1978 2002 C1' U F 300 beta 1997 2003 2000 2022 C1' A F 301 beta 2017 2023 2020 2044 C1' A F 302 beta 2039 2045 2042 2066 C1' G F 303 beta 2061 2067 2064 2089 C1' A F 304 beta 2084 2090 2087 2111 C1' U F 305 beta 2106 2112 2109 2131 C1' A F 306 beta 2126 2132 2129 2153 C1' U F 307 beta 2148 2154 2151 2173 C1' A F 308 beta 2168 2174 2171 2195 C1' G F 309 beta 2190 2196 2193 2218 C1' U F 310 beta 2213 2219 2216 2238 C1' C F 311 beta 2233 2239 2236 2258 C1' G F 312 beta 2253 2259 2256 2281 C1' G F 313 beta 2276 2282 2279 2304 C1' A F 314 beta 2299 2305 2302 2327 C1' U G 412 beta 2322 2328 2325 2347 C1' C G 413 beta 2342 2348 2345 2367 C1' G G 414 beta 2362 2368 2365 2390 C1' U G 415 beta 2385 2391 2388 2410 C1' A G 416 beta 2405 2411 2408 2432 C1' A G 417 beta 2427 2433 2430 2454 C1' G G 418 beta 2449 2455 2452 2477 C1' G G 419 beta 2472 2478 2475 2500 C1' U G 420 beta 2495 2501 2498 2520 C1' A G 421 beta 2515 2521 2518 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 10 C2' U A 2 OK 12 8 11 30 C2' C A 3 OK 32 28 31 50 C2' U A 4 OK 52 48 51 70 C2' C A 5 OK 72 68 71 90 C2' U A 6 OK 92 88 91 111 C2' U B 15 OK 113 109 112 131 C2' A B 16 OK 133 129 132 153 C2' C B 17 OK 155 151 154 173 C2' C B 18 OK 175 171 174 193 C2' U B 19 OK 195 191 194 213 C2' U B 20 OK 215 211 214 233 C2' U B 21 OK 235 231 234 253 C2' G B 22 OK 255 251 254 276 C2' G B 23 OK 278 274 277 299 C2' A B 24 OK 301 297 300 321 C2' G B 25 OK 323 319 322 344 C2' G B 26 OK 346 342 345 367 C2' A B 28 OK 369 365 368 390 C2' G C 96 OK 392 388 391 413 C2' A C 97 OK 415 411 414 435 C2' C C 98 OK 437 433 436 455 C2' C C 99 OK 457 453 456 475 C2' G C 100 OK 477 473 476 498 C2' U C 101 OK 500 496 499 518 C2' C C 102 OK 520 516 519 538 C2' A C 103 OK 540 536 539 560 C2' A C 104 OK 562 558 561 582 C2' A C 105 OK 584 580 583 604 C2' U C 106 OK 606 602 605 624 C2' U C 107 OK 626 622 625 644 C2' G C 108 OK 646 642 645 667 C2' C C 109 OK 669 665 668 687 C2' G C 110 OK 689 685 688 710 C2' G C 111 OK 712 708 711 733 C2' G C 112 OK 735 731 734 756 C2' A C 113 OK 758 754 757 778 C2' A C 114 OK 780 776 779 800 C2' A C 115 OK 802 798 801 822 C2' G C 116 OK 824 820 823 845 C2' G C 117 OK 847 843 846 869 C2' C D 204 OK 871 867 870 889 C2' U D 205 OK 891 887 890 909 C2' A D 206 OK 911 907 910 931 C2' A D 207 OK 933 929 932 953 C2' C D 208 OK 955 951 954 973 C2' C D 209 OK 975 971 974 993 C2' A D 210 OK 995 991 994 1015 C2' C D 211 OK 1017 1013 1016 1035 C2' G D 212 OK 1037 1033 1036 1058 C2' C D 213 OK 1060 1056 1059 1078 C2' A D 214 OK 1080 1076 1079 1100 C2' G D 215 OK 1102 1098 1101 1123 C2' C D 216 OK 1125 1121 1124 1143 C2' C D 217 OK 1145 1141 1144 1163 C2' A D 218 OK 1165 1161 1164 1185 C2' A D 219 OK 1187 1183 1186 1207 C2' G D 220 OK 1209 1205 1208 1230 C2' U D 221 OK 1232 1228 1231 1251 C2' A E 252 OK 1253 1249 1252 1273 C2' U E 253 OK 1275 1271 1274 1293 C2' G E 254 OK 1295 1291 1294 1316 C2' C E 255 OK 1318 1314 1317 1336 C2' A E 256 OK 1338 1334 1337 1358 C2' G E 257 OK 1360 1356 1359 1381 C2' U E 258 OK 1383 1379 1382 1401 C2' U E 259 OK 1403 1399 1402 1421 C2' C E 260 OK 1423 1419 1422 1441 C2' A E 261 OK 1443 1439 1442 1463 C2' C E 262 OK 1465 1461 1464 1483 C2' A E 263 OK 1485 1481 1484 1505 C2' G E 264 OK 1507 1503 1506 1528 C2' A E 265 OK 1530 1526 1529 1550 C2' C E 266 OK 1552 1548 1551 1570 C2' U E 267 OK 1572 1568 1571 1590 C2' A E 268 OK 1592 1588 1591 1612 C2' A E 269 OK 1614 1610 1613 1634 C2' A E 270 OK 1636 1632 1635 1656 C2' U E 271 OK 1658 1654 1657 1676 C2' G E 272 OK 1678 1674 1677 1699 C2' U E 273 OK 1701 1697 1700 1719 C2' C E 274 OK 1721 1717 1720 1739 C2' G E 275 OK 1741 1737 1740 1762 C2' G E 276 OK 1764 1760 1763 1785 C2' U E 277 OK 1787 1783 1786 1805 C2' C E 278 OK 1807 1803 1806 1825 C2' G E 279 OK 1827 1823 1826 1848 C2' G E 280 OK 1850 1846 1849 1871 C2' G E 281 OK 1873 1869 1872 1894 C2' G E 282 OK 1896 1892 1895 1918 C2' C F 296 OK 1920 1916 1919 1938 C2' U F 297 OK 1940 1936 1939 1958 C2' C F 298 OK 1960 1956 1959 1978 C2' A F 299 OK 1980 1976 1979 2000 C2' U F 300 OK 2002 1998 2001 2020 C2' A F 301 OK 2022 2018 2021 2042 C2' A F 302 OK 2044 2040 2043 2064 C2' G F 303 OK 2066 2062 2065 2087 C2' A F 304 OK 2089 2085 2088 2109 C2' U F 305 OK 2111 2107 2110 2129 C2' A F 306 OK 2131 2127 2130 2151 C2' U F 307 OK 2153 2149 2152 2171 C2' A F 308 OK 2173 2169 2172 2193 C2' G F 309 OK 2195 2191 2194 2216 C2' U F 310 OK 2218 2214 2217 2236 C2' C F 311 OK 2238 2234 2237 2256 C2' G F 312 OK 2258 2254 2257 2279 C2' G F 313 OK 2281 2277 2280 2302 C2' A F 314 OK 2304 2300 2303 2325 C2' U G 412 OK 2327 2323 2326 2345 C2' C G 413 OK 2347 2343 2346 2365 C2' G G 414 OK 2367 2363 2366 2388 C2' U G 415 OK 2390 2386 2389 2408 C2' A G 416 OK 2410 2406 2409 2430 C2' A G 417 OK 2432 2428 2431 2452 C2' G G 418 OK 2454 2450 2453 2475 C2' G G 419 OK 2477 2473 2476 2498 C2' U G 420 OK 2500 2496 2499 2518 C2' A G 421 OK 2520 2516 2519 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 8 C3' U A 2 OK 6 9 10 28 C3' C A 3 OK 26 29 30 48 C3' U A 4 OK 46 49 50 68 C3' C A 5 OK 66 69 70 88 C3' U A 6 OK 86 89 90 109 C3' U B 15 OK 107 110 111 129 C3' A B 16 OK 127 130 131 151 C3' C B 17 OK 149 152 153 171 C3' C B 18 OK 169 172 173 191 C3' U B 19 OK 189 192 193 211 C3' U B 20 OK 209 212 213 231 C3' U B 21 OK 229 232 233 251 C3' G B 22 OK 249 252 253 274 C3' G B 23 OK 272 275 276 297 C3' A B 24 OK 295 298 299 319 C3' G B 25 OK 317 320 321 342 C3' G B 26 OK 340 343 344 365 C3' A B 28 OK 363 366 367 388 C3' G C 96 OK 386 389 390 411 C3' A C 97 OK 409 412 413 433 C3' C C 98 OK 431 434 435 453 C3' C C 99 OK 451 454 455 473 C3' G C 100 OK 471 474 475 496 C3' U C 101 OK 494 497 498 516 C3' C C 102 OK 514 517 518 536 C3' A C 103 OK 534 537 538 558 C3' A C 104 OK 556 559 560 580 C3' A C 105 OK 578 581 582 602 C3' U C 106 OK 600 603 604 622 C3' U C 107 OK 620 623 624 642 C3' G C 108 OK 640 643 644 665 C3' C C 109 OK 663 666 667 685 C3' G C 110 OK 683 686 687 708 C3' G C 111 OK 706 709 710 731 C3' G C 112 OK 729 732 733 754 C3' A C 113 OK 752 755 756 776 C3' A C 114 OK 774 777 778 798 C3' A C 115 OK 796 799 800 820 C3' G C 116 OK 818 821 822 843 C3' G C 117 OK 841 844 845 867 C3' C D 204 OK 865 868 869 887 C3' U D 205 OK 885 888 889 907 C3' A D 206 OK 905 908 909 929 C3' A D 207 OK 927 930 931 951 C3' C D 208 OK 949 952 953 971 C3' C D 209 OK 969 972 973 991 C3' A D 210 OK 989 992 993 1013 C3' C D 211 OK 1011 1014 1015 1033 C3' G D 212 OK 1031 1034 1035 1056 C3' C D 213 OK 1054 1057 1058 1076 C3' A D 214 OK 1074 1077 1078 1098 C3' G D 215 OK 1096 1099 1100 1121 C3' C D 216 OK 1119 1122 1123 1141 C3' C D 217 OK 1139 1142 1143 1161 C3' A D 218 OK 1159 1162 1163 1183 C3' A D 219 OK 1181 1184 1185 1205 C3' G D 220 OK 1203 1206 1207 1228 C3' U D 221 OK 1226 1229 1230 1249 C3' A E 252 OK 1247 1250 1251 1271 C3' U E 253 OK 1269 1272 1273 1291 C3' G E 254 OK 1289 1292 1293 1314 C3' C E 255 OK 1312 1315 1316 1334 C3' A E 256 OK 1332 1335 1336 1356 C3' G E 257 OK 1354 1357 1358 1379 C3' U E 258 OK 1377 1380 1381 1399 C3' U E 259 OK 1397 1400 1401 1419 C3' C E 260 OK 1417 1420 1421 1439 C3' A E 261 OK 1437 1440 1441 1461 C3' C E 262 OK 1459 1462 1463 1481 C3' A E 263 OK 1479 1482 1483 1503 C3' G E 264 OK 1501 1504 1505 1526 C3' A E 265 OK 1524 1527 1528 1548 C3' C E 266 OK 1546 1549 1550 1568 C3' U E 267 OK 1566 1569 1570 1588 C3' A E 268 OK 1586 1589 1590 1610 C3' A E 269 OK 1608 1611 1612 1632 C3' A E 270 OK 1630 1633 1634 1654 C3' U E 271 OK 1652 1655 1656 1674 C3' G E 272 OK 1672 1675 1676 1697 C3' U E 273 OK 1695 1698 1699 1717 C3' C E 274 OK 1715 1718 1719 1737 C3' G E 275 OK 1735 1738 1739 1760 C3' G E 276 OK 1758 1761 1762 1783 C3' U E 277 OK 1781 1784 1785 1803 C3' C E 278 OK 1801 1804 1805 1823 C3' G E 279 OK 1821 1824 1825 1846 C3' G E 280 OK 1844 1847 1848 1869 C3' G E 281 OK 1867 1870 1871 1892 C3' G E 282 OK 1890 1893 1894 1916 C3' C F 296 OK 1914 1917 1918 1936 C3' U F 297 OK 1934 1937 1938 1956 C3' C F 298 OK 1954 1957 1958 1976 C3' A F 299 OK 1974 1977 1978 1998 C3' U F 300 OK 1996 1999 2000 2018 C3' A F 301 OK 2016 2019 2020 2040 C3' A F 302 OK 2038 2041 2042 2062 C3' G F 303 OK 2060 2063 2064 2085 C3' A F 304 OK 2083 2086 2087 2107 C3' U F 305 OK 2105 2108 2109 2127 C3' A F 306 OK 2125 2128 2129 2149 C3' U F 307 OK 2147 2150 2151 2169 C3' A F 308 OK 2167 2170 2171 2191 C3' G F 309 OK 2189 2192 2193 2214 C3' U F 310 OK 2212 2215 2216 2234 C3' C F 311 OK 2232 2235 2236 2254 C3' G F 312 OK 2252 2255 2256 2277 C3' G F 313 OK 2275 2278 2279 2300 C3' A F 314 OK 2298 2301 2302 2323 C3' U G 412 OK 2321 2324 2325 2343 C3' C G 413 OK 2341 2344 2345 2363 C3' G G 414 OK 2361 2364 2365 2386 C3' U G 415 OK 2384 2387 2388 2406 C3' A G 416 OK 2404 2407 2408 2428 C3' A G 417 OK 2426 2429 2430 2450 C3' G G 418 OK 2448 2451 2452 2473 C3' G G 419 OK 2471 2474 2475 2496 C3' U G 420 OK 2494 2497 2498 2516 C3' A G 421 OK 2514 2517 2518 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 6 C4' U A 2 OK 8 5 7 26 C4' C A 3 OK 28 25 27 46 C4' U A 4 OK 48 45 47 66 C4' C A 5 OK 68 65 67 86 C4' U A 6 OK 88 85 87 107 C4' U B 15 OK 109 106 108 127 C4' A B 16 OK 129 126 128 149 C4' C B 17 OK 151 148 150 169 C4' C B 18 OK 171 168 170 189 C4' U B 19 OK 191 188 190 209 C4' U B 20 OK 211 208 210 229 C4' U B 21 OK 231 228 230 249 C4' G B 22 OK 251 248 250 272 C4' G B 23 OK 274 271 273 295 C4' A B 24 OK 297 294 296 317 C4' G B 25 OK 319 316 318 340 C4' G B 26 OK 342 339 341 363 C4' A B 28 OK 365 362 364 386 C4' G C 96 OK 388 385 387 409 C4' A C 97 OK 411 408 410 431 C4' C C 98 OK 433 430 432 451 C4' C C 99 OK 453 450 452 471 C4' G C 100 OK 473 470 472 494 C4' U C 101 OK 496 493 495 514 C4' C C 102 OK 516 513 515 534 C4' A C 103 OK 536 533 535 556 C4' A C 104 OK 558 555 557 578 C4' A C 105 OK 580 577 579 600 C4' U C 106 OK 602 599 601 620 C4' U C 107 OK 622 619 621 640 C4' G C 108 OK 642 639 641 663 C4' C C 109 OK 665 662 664 683 C4' G C 110 OK 685 682 684 706 C4' G C 111 OK 708 705 707 729 C4' G C 112 OK 731 728 730 752 C4' A C 113 OK 754 751 753 774 C4' A C 114 OK 776 773 775 796 C4' A C 115 OK 798 795 797 818 C4' G C 116 OK 820 817 819 841 C4' G C 117 OK 843 840 842 865 C4' C D 204 OK 867 864 866 885 C4' U D 205 OK 887 884 886 905 C4' A D 206 OK 907 904 906 927 C4' A D 207 OK 929 926 928 949 C4' C D 208 OK 951 948 950 969 C4' C D 209 OK 971 968 970 989 C4' A D 210 OK 991 988 990 1011 C4' C D 211 OK 1013 1010 1012 1031 C4' G D 212 OK 1033 1030 1032 1054 C4' C D 213 OK 1056 1053 1055 1074 C4' A D 214 OK 1076 1073 1075 1096 C4' G D 215 OK 1098 1095 1097 1119 C4' C D 216 OK 1121 1118 1120 1139 C4' C D 217 OK 1141 1138 1140 1159 C4' A D 218 OK 1161 1158 1160 1181 C4' A D 219 OK 1183 1180 1182 1203 C4' G D 220 OK 1205 1202 1204 1226 C4' U D 221 OK 1228 1225 1227 1247 C4' A E 252 OK 1249 1246 1248 1269 C4' U E 253 OK 1271 1268 1270 1289 C4' G E 254 OK 1291 1288 1290 1312 C4' C E 255 OK 1314 1311 1313 1332 C4' A E 256 OK 1334 1331 1333 1354 C4' G E 257 OK 1356 1353 1355 1377 C4' U E 258 OK 1379 1376 1378 1397 C4' U E 259 OK 1399 1396 1398 1417 C4' C E 260 OK 1419 1416 1418 1437 C4' A E 261 OK 1439 1436 1438 1459 C4' C E 262 OK 1461 1458 1460 1479 C4' A E 263 OK 1481 1478 1480 1501 C4' G E 264 OK 1503 1500 1502 1524 C4' A E 265 OK 1526 1523 1525 1546 C4' C E 266 OK 1548 1545 1547 1566 C4' U E 267 OK 1568 1565 1567 1586 C4' A E 268 OK 1588 1585 1587 1608 C4' A E 269 OK 1610 1607 1609 1630 C4' A E 270 OK 1632 1629 1631 1652 C4' U E 271 OK 1654 1651 1653 1672 C4' G E 272 OK 1674 1671 1673 1695 C4' U E 273 OK 1697 1694 1696 1715 C4' C E 274 OK 1717 1714 1716 1735 C4' G E 275 OK 1737 1734 1736 1758 C4' G E 276 OK 1760 1757 1759 1781 C4' U E 277 OK 1783 1780 1782 1801 C4' C E 278 OK 1803 1800 1802 1821 C4' G E 279 OK 1823 1820 1822 1844 C4' G E 280 OK 1846 1843 1845 1867 C4' G E 281 OK 1869 1866 1868 1890 C4' G E 282 OK 1892 1889 1891 1914 C4' C F 296 OK 1916 1913 1915 1934 C4' U F 297 OK 1936 1933 1935 1954 C4' C F 298 OK 1956 1953 1955 1974 C4' A F 299 OK 1976 1973 1975 1996 C4' U F 300 OK 1998 1995 1997 2016 C4' A F 301 OK 2018 2015 2017 2038 C4' A F 302 OK 2040 2037 2039 2060 C4' G F 303 OK 2062 2059 2061 2083 C4' A F 304 OK 2085 2082 2084 2105 C4' U F 305 OK 2107 2104 2106 2125 C4' A F 306 OK 2127 2124 2126 2147 C4' U F 307 OK 2149 2146 2148 2167 C4' A F 308 OK 2169 2166 2168 2189 C4' G F 309 OK 2191 2188 2190 2212 C4' U F 310 OK 2214 2211 2213 2232 C4' C F 311 OK 2234 2231 2233 2252 C4' G F 312 OK 2254 2251 2253 2275 C4' G F 313 OK 2277 2274 2276 2298 C4' A F 314 OK 2300 2297 2299 2321 C4' U G 412 OK 2323 2320 2322 2341 C4' C G 413 OK 2343 2340 2342 2361 C4' G G 414 OK 2363 2360 2362 2384 C4' U G 415 OK 2386 2383 2385 2404 C4' A G 416 OK 2406 2403 2405 2426 C4' A G 417 OK 2428 2425 2427 2448 C4' G G 418 OK 2450 2447 2449 2471 C4' G G 419 OK 2473 2470 2472 2494 C4' U G 420 OK 2496 2493 2495 2514 C4' A G 421 OK 2516 2513 2515 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 5 C5' U A 2 4 6 25 C5' C A 3 24 26 45 C5' U A 4 44 46 65 C5' C A 5 64 66 85 C5' U A 6 84 86 106 C5' U B 15 105 107 126 C5' A B 16 125 127 148 C5' C B 17 147 149 168 C5' C B 18 167 169 188 C5' U B 19 187 189 208 C5' U B 20 207 209 228 C5' U B 21 227 229 248 C5' G B 22 247 249 271 C5' G B 23 270 272 294 C5' A B 24 293 295 316 C5' G B 25 315 317 339 C5' G B 26 338 340 362 C5' A B 28 361 363 385 C5' G C 96 384 386 408 C5' A C 97 407 409 430 C5' C C 98 429 431 450 C5' C C 99 449 451 470 C5' G C 100 469 471 493 C5' U C 101 492 494 513 C5' C C 102 512 514 533 C5' A C 103 532 534 555 C5' A C 104 554 556 577 C5' A C 105 576 578 599 C5' U C 106 598 600 619 C5' U C 107 618 620 639 C5' G C 108 638 640 662 C5' C C 109 661 663 682 C5' G C 110 681 683 705 C5' G C 111 704 706 728 C5' G C 112 727 729 751 C5' A C 113 750 752 773 C5' A C 114 772 774 795 C5' A C 115 794 796 817 C5' G C 116 816 818 840 C5' G C 117 839 841 864 C5' C D 204 863 865 884 C5' U D 205 883 885 904 C5' A D 206 903 905 926 C5' A D 207 925 927 948 C5' C D 208 947 949 968 C5' C D 209 967 969 988 C5' A D 210 987 989 1010 C5' C D 211 1009 1011 1030 C5' G D 212 1029 1031 1053 C5' C D 213 1052 1054 1073 C5' A D 214 1072 1074 1095 C5' G D 215 1094 1096 1118 C5' C D 216 1117 1119 1138 C5' C D 217 1137 1139 1158 C5' A D 218 1157 1159 1180 C5' A D 219 1179 1181 1202 C5' G D 220 1201 1203 1225 C5' U D 221 1224 1226 1246 C5' A E 252 1245 1247 1268 C5' U E 253 1267 1269 1288 C5' G E 254 1287 1289 1311 C5' C E 255 1310 1312 1331 C5' A E 256 1330 1332 1353 C5' G E 257 1352 1354 1376 C5' U E 258 1375 1377 1396 C5' U E 259 1395 1397 1416 C5' C E 260 1415 1417 1436 C5' A E 261 1435 1437 1458 C5' C E 262 1457 1459 1478 C5' A E 263 1477 1479 1500 C5' G E 264 1499 1501 1523 C5' A E 265 1522 1524 1545 C5' C E 266 1544 1546 1565 C5' U E 267 1564 1566 1585 C5' A E 268 1584 1586 1607 C5' A E 269 1606 1608 1629 C5' A E 270 1628 1630 1651 C5' U E 271 1650 1652 1671 C5' G E 272 1670 1672 1694 C5' U E 273 1693 1695 1714 C5' C E 274 1713 1715 1734 C5' G E 275 1733 1735 1757 C5' G E 276 1756 1758 1780 C5' U E 277 1779 1781 1800 C5' C E 278 1799 1801 1820 C5' G E 279 1819 1821 1843 C5' G E 280 1842 1844 1866 C5' G E 281 1865 1867 1889 C5' G E 282 1888 1890 1913 C5' C F 296 1912 1914 1933 C5' U F 297 1932 1934 1953 C5' C F 298 1952 1954 1973 C5' A F 299 1972 1974 1995 C5' U F 300 1994 1996 2015 C5' A F 301 2014 2016 2037 C5' A F 302 2036 2038 2059 C5' G F 303 2058 2060 2082 C5' A F 304 2081 2083 2104 C5' U F 305 2103 2105 2124 C5' A F 306 2123 2125 2146 C5' U F 307 2145 2147 2166 C5' A F 308 2165 2167 2188 C5' G F 309 2187 2189 2211 C5' U F 310 2210 2212 2231 C5' C F 311 2230 2232 2251 C5' G F 312 2250 2252 2274 C5' G F 313 2273 2275 2297 C5' A F 314 2296 2298 2320 C5' U G 412 2319 2321 2340 C5' C G 413 2339 2341 2360 C5' G G 414 2359 2361 2383 C5' U G 415 2382 2384 2403 C5' A G 416 2402 2404 2425 C5' A G 417 2424 2426 2447 C5' G G 418 2446 2448 2470 C5' G G 419 2469 2471 2493 C5' U G 420 2492 2494 2513 C5' A G 421 2512 2514 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1 P U A 2 distorted distorted 2 3 4 21 P C A 3 distorted distorted 9 22 23 24 41 P U A 4 distorted distorted 29 42 43 44 61 P C A 5 distorted distorted 49 62 63 64 81 P U A 6 distorted distorted 69 82 83 84 102 P U B 15 distorted distorted 103 104 105 122 P A B 16 distorted distorted 110 123 124 125 144 P C B 17 distorted distorted 130 145 146 147 164 P C B 18 distorted distorted 152 165 166 167 184 P U B 19 distorted distorted 172 185 186 187 204 P U B 20 distorted distorted 192 205 206 207 224 P U B 21 distorted distorted 212 225 226 227 244 P G B 22 distorted distorted 232 245 246 247 267 P G B 23 distorted distorted 252 268 269 270 290 P A B 24 distorted distorted 275 291 292 293 312 P G B 25 distorted distorted 298 313 314 315 335 P G B 26 distorted distorted 320 336 337 338 358 P A B 28 distorted distorted 343 359 360 361 381 P G C 96 distorted distorted 366 382 383 384 404 P A C 97 distorted distorted 389 405 406 407 426 P C C 98 distorted distorted 412 427 428 429 446 P C C 99 distorted distorted 434 447 448 449 466 P G C 100 distorted distorted 454 467 468 469 489 P U C 101 distorted distorted 474 490 491 492 509 P C C 102 distorted distorted 497 510 511 512 529 P A C 103 distorted distorted 517 530 531 532 551 P A C 104 distorted distorted 537 552 553 554 573 P A C 105 distorted distorted 559 574 575 576 595 P U C 106 distorted distorted 581 596 597 598 615 P U C 107 distorted distorted 603 616 617 618 635 P G C 108 distorted distorted 623 636 637 638 658 P C C 109 distorted distorted 643 659 660 661 678 P G C 110 distorted distorted 666 679 680 681 701 P G C 111 distorted distorted 686 702 703 704 724 P G C 112 distorted distorted 709 725 726 727 747 P A C 113 distorted distorted 732 748 749 750 769 P A C 114 distorted distorted 755 770 771 772 791 P A C 115 distorted distorted 777 792 793 794 813 P G C 116 distorted distorted 799 814 815 816 836 P G C 117 distorted distorted 821 837 838 839 860 P C D 204 distorted distorted 861 862 863 880 P U D 205 distorted distorted 868 881 882 883 900 P A D 206 distorted distorted 888 901 902 903 922 P A D 207 distorted distorted 908 923 924 925 944 P C D 208 distorted distorted 930 945 946 947 964 P C D 209 distorted distorted 952 965 966 967 984 P A D 210 distorted distorted 972 985 986 987 1006 P C D 211 distorted distorted 992 1007 1008 1009 1026 P G D 212 distorted distorted 1014 1027 1028 1029 1049 P C D 213 distorted distorted 1034 1050 1051 1052 1069 P A D 214 distorted distorted 1057 1070 1071 1072 1091 P G D 215 distorted distorted 1077 1092 1093 1094 1114 P C D 216 distorted distorted 1099 1115 1116 1117 1134 P C D 217 distorted distorted 1122 1135 1136 1137 1154 P A D 218 distorted distorted 1142 1155 1156 1157 1176 P A D 219 distorted distorted 1162 1177 1178 1179 1198 P G D 220 distorted distorted 1184 1199 1200 1201 1221 P U D 221 distorted distorted 1206 1222 1223 1224 1242 P A E 252 distorted distorted 1243 1244 1245 1264 P U E 253 distorted distorted 1250 1265 1266 1267 1284 P G E 254 distorted distorted 1272 1285 1286 1287 1307 P C E 255 distorted distorted 1292 1308 1309 1310 1327 P A E 256 distorted distorted 1315 1328 1329 1330 1349 P G E 257 distorted distorted 1335 1350 1351 1352 1372 P U E 258 distorted distorted 1357 1373 1374 1375 1392 P U E 259 distorted distorted 1380 1393 1394 1395 1412 P C E 260 distorted distorted 1400 1413 1414 1415 1432 P A E 261 distorted distorted 1420 1433 1434 1435 1454 P C E 262 distorted distorted 1440 1455 1456 1457 1474 P A E 263 distorted distorted 1462 1475 1476 1477 1496 P G E 264 distorted distorted 1482 1497 1498 1499 1519 P A E 265 distorted distorted 1504 1520 1521 1522 1541 P C E 266 distorted distorted 1527 1542 1543 1544 1561 P U E 267 distorted distorted 1549 1562 1563 1564 1581 P A E 268 distorted distorted 1569 1582 1583 1584 1603 P A E 269 distorted distorted 1589 1604 1605 1606 1625 P A E 270 distorted distorted 1611 1626 1627 1628 1647 P U E 271 distorted distorted 1633 1648 1649 1650 1667 P G E 272 distorted distorted 1655 1668 1669 1670 1690 P U E 273 distorted distorted 1675 1691 1692 1693 1710 P C E 274 distorted distorted 1698 1711 1712 1713 1730 P G E 275 distorted distorted 1718 1731 1732 1733 1753 P G E 276 distorted distorted 1738 1754 1755 1756 1776 P U E 277 distorted distorted 1761 1777 1778 1779 1796 P C E 278 distorted distorted 1784 1797 1798 1799 1816 P G E 279 distorted distorted 1804 1817 1818 1819 1839 P G E 280 distorted distorted 1824 1840 1841 1842 1862 P G E 281 distorted distorted 1847 1863 1864 1865 1885 P G E 282 distorted distorted 1870 1886 1887 1888 1909 P C F 296 distorted distorted 1910 1911 1912 1929 P U F 297 distorted distorted 1917 1930 1931 1932 1949 P C F 298 distorted distorted 1937 1950 1951 1952 1969 P A F 299 distorted distorted 1957 1970 1971 1972 1991 P U F 300 distorted distorted 1977 1992 1993 1994 2011 P A F 301 distorted distorted 1999 2012 2013 2014 2033 P A F 302 distorted distorted 2019 2034 2035 2036 2055 P G F 303 distorted distorted 2041 2056 2057 2058 2078 P A F 304 distorted distorted 2063 2079 2080 2081 2100 P U F 305 distorted distorted 2086 2101 2102 2103 2120 P A F 306 distorted distorted 2108 2121 2122 2123 2142 P U F 307 distorted distorted 2128 2143 2144 2145 2162 P A F 308 distorted distorted 2150 2163 2164 2165 2184 P G F 309 distorted distorted 2170 2185 2186 2187 2207 P U F 310 distorted distorted 2192 2208 2209 2210 2227 P C F 311 distorted distorted 2215 2228 2229 2230 2247 P G F 312 distorted distorted 2235 2248 2249 2250 2270 P G F 313 distorted distorted 2255 2271 2272 2273 2293 P A F 314 distorted distorted 2278 2294 2295 2296 2316 P U G 412 distorted distorted 2317 2318 2319 2336 P C G 413 distorted distorted 2324 2337 2338 2339 2356 P G G 414 distorted distorted 2344 2357 2358 2359 2379 P U G 415 distorted distorted 2364 2380 2381 2382 2399 P A G 416 distorted distorted 2387 2400 2401 2402 2421 P A G 417 distorted distorted 2407 2422 2423 2424 2443 P G G 418 distorted distorted 2429 2444 2445 2446 2466 P G G 419 distorted distorted 2451 2467 2468 2469 2489 P U G 420 distorted distorted 2474 2490 2491 2492 2509 P A G 421 distorted distorted 2497 2510 2511 2512 ---------------------------------------------------------------------------------