ID code: '1HC8' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 1086 C1' GTP C 101 beta 1081 1087 1084 1109 C1' C C 102 beta 1104 1110 1107 1129 C1' C C 103 beta 1124 1130 1127 1149 C1' A C 104 beta 1144 1150 1147 1171 C1' G C 105 beta 1166 1172 1169 1194 C1' G C 106 beta 1189 1195 1192 1217 C1' A C 107 beta 1212 1218 1215 1239 C1' U C 108 beta 1234 1240 1237 1259 C1' G C 109 beta 1254 1260 1257 1282 C1' U C 110 beta 1277 1283 1280 1302 C1' A C 111 beta 1297 1303 1300 1324 C1' G C 112 beta 1319 1325 1322 1347 C1' G C 113 beta 1342 1348 1345 1370 C1' C C 114 beta 1365 1371 1368 1390 C1' U C 115 beta 1385 1391 1388 1410 C1' U C 116 beta 1405 1411 1408 1430 C1' A C 117 beta 1425 1431 1428 1452 C1' G C 118 beta 1447 1453 1450 1475 C1' A C 119 beta 1470 1476 1473 1497 C1' A C 120 beta 1492 1498 1495 1519 C1' G C 121 beta 1514 1520 1517 1542 C1' C C 122 beta 1537 1543 1540 1562 C1' A C 123 beta 1557 1563 1560 1584 C1' G C 124 beta 1579 1585 1582 1607 C1' C C 125 beta 1602 1608 1605 1627 C1' C C 126 beta 1622 1628 1625 1647 C1' A C 127 beta 1642 1648 1645 1669 C1' U C 128 beta 1664 1670 1667 1689 C1' C C 129 beta 1684 1690 1687 1709 C1' A C 130 beta 1704 1710 1707 1731 C1' U C 131 beta 1726 1732 1729 1751 C1' U C 132 beta 1746 1752 1749 1771 C1' U C 133 beta 1766 1772 1769 1791 C1' A C 134 beta 1786 1792 1789 1813 C1' A C 135 beta 1808 1814 1811 1835 C1' A C 136 beta 1830 1836 1833 1857 C1' G C 137 beta 1852 1858 1855 1880 C1' A C 138 beta 1875 1881 1878 1902 C1' A C 139 beta 1897 1903 1900 1924 C1' A C 140 beta 1919 1925 1922 1946 C1' G C 141 beta 1941 1947 1944 1969 C1' C C 142 beta 1964 1970 1967 1989 C1' G C 143 beta 1984 1990 1987 2012 C1' U C 144 beta 2007 2013 2010 2032 C1' A C 145 beta 2027 2033 2030 2054 C1' A C 146 beta 2049 2055 2052 2076 C1' U C 147 beta 2071 2077 2074 2096 C1' A C 148 beta 2091 2097 2094 2118 C1' G C 149 beta 2113 2119 2116 2141 C1' C C 150 beta 2136 2142 2139 2161 C1' U C 151 beta 2156 2162 2159 2181 C1' C C 152 beta 2176 2182 2179 2201 C1' A C 153 beta 2196 2202 2199 2223 C1' C C 154 beta 2218 2224 2221 2243 C1' U C 155 beta 2238 2244 2241 2263 C1' G C 156 beta 2258 2264 2261 2286 C1' G C 157 beta 2281 2287 2284 2309 C1' U C 158 beta 2304 2310 2307 2339 C1' GTP D 301 beta 2334 2340 2337 2362 C1' C D 302 beta 2357 2363 2360 2382 C1' C D 303 beta 2377 2383 2380 2402 C1' A D 304 beta 2397 2403 2400 2424 C1' G D 305 beta 2419 2425 2422 2447 C1' G D 306 beta 2442 2448 2445 2470 C1' A D 307 beta 2465 2471 2468 2492 C1' U D 308 beta 2487 2493 2490 2512 C1' G D 309 beta 2507 2513 2510 2535 C1' U D 310 beta 2530 2536 2533 2555 C1' A D 311 beta 2550 2556 2553 2577 C1' G D 312 beta 2572 2578 2575 2600 C1' G D 313 beta 2595 2601 2598 2623 C1' C D 314 beta 2618 2624 2621 2643 C1' U D 315 beta 2638 2644 2641 2663 C1' U D 316 beta 2658 2664 2661 2683 C1' A D 317 beta 2678 2684 2681 2705 C1' G D 318 beta 2700 2706 2703 2728 C1' A D 319 beta 2723 2729 2726 2750 C1' A D 320 beta 2745 2751 2748 2772 C1' G D 321 beta 2767 2773 2770 2795 C1' C D 322 beta 2790 2796 2793 2815 C1' A D 323 beta 2810 2816 2813 2837 C1' G D 324 beta 2832 2838 2835 2860 C1' C D 325 beta 2855 2861 2858 2880 C1' C D 326 beta 2875 2881 2878 2900 C1' A D 327 beta 2895 2901 2898 2922 C1' U D 328 beta 2917 2923 2920 2942 C1' C D 329 beta 2937 2943 2940 2962 C1' A D 330 beta 2957 2963 2960 2984 C1' U D 331 beta 2979 2985 2982 3004 C1' U D 332 beta 2999 3005 3002 3024 C1' U D 333 beta 3019 3025 3022 3044 C1' A D 334 beta 3039 3045 3042 3066 C1' A D 335 beta 3061 3067 3064 3088 C1' A D 336 beta 3083 3089 3086 3110 C1' G D 337 beta 3105 3111 3108 3133 C1' A D 338 beta 3128 3134 3131 3155 C1' A D 339 beta 3150 3156 3153 3177 C1' A D 340 beta 3172 3178 3175 3199 C1' G D 341 beta 3194 3200 3197 3222 C1' C D 342 beta 3217 3223 3220 3242 C1' G D 343 beta 3237 3243 3240 3265 C1' U D 344 beta 3260 3266 3263 3285 C1' A D 345 beta 3280 3286 3283 3307 C1' A D 346 beta 3302 3308 3305 3329 C1' U D 347 beta 3324 3330 3327 3349 C1' A D 348 beta 3344 3350 3347 3371 C1' G D 349 beta 3366 3372 3369 3394 C1' C D 350 beta 3389 3395 3392 3414 C1' U D 351 beta 3409 3415 3412 3434 C1' C D 352 beta 3429 3435 3432 3454 C1' A D 353 beta 3449 3455 3452 3476 C1' C D 354 beta 3471 3477 3474 3496 C1' U D 355 beta 3491 3497 3494 3516 C1' G D 356 beta 3511 3517 3514 3539 C1' G D 357 beta 3534 3540 3537 3562 C1' U D 358 beta 3557 3563 3560 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 1084 C2' GTP C 101 OK 1086 1082 1085 1107 C2' C C 102 OK 1109 1105 1108 1127 C2' C C 103 OK 1129 1125 1128 1147 C2' A C 104 OK 1149 1145 1148 1169 C2' G C 105 OK 1171 1167 1170 1192 C2' G C 106 OK 1194 1190 1193 1215 C2' A C 107 OK 1217 1213 1216 1237 C2' U C 108 OK 1239 1235 1238 1257 C2' G C 109 OK 1259 1255 1258 1280 C2' U C 110 OK 1282 1278 1281 1300 C2' A C 111 OK 1302 1298 1301 1322 C2' G C 112 OK 1324 1320 1323 1345 C2' G C 113 OK 1347 1343 1346 1368 C2' C C 114 OK 1370 1366 1369 1388 C2' U C 115 OK 1390 1386 1389 1408 C2' U C 116 OK 1410 1406 1409 1428 C2' A C 117 OK 1430 1426 1429 1450 C2' G C 118 OK 1452 1448 1451 1473 C2' A C 119 OK 1475 1471 1474 1495 C2' A C 120 OK 1497 1493 1496 1517 C2' G C 121 OK 1519 1515 1518 1540 C2' C C 122 OK 1542 1538 1541 1560 C2' A C 123 OK 1562 1558 1561 1582 C2' G C 124 OK 1584 1580 1583 1605 C2' C C 125 OK 1607 1603 1606 1625 C2' C C 126 OK 1627 1623 1626 1645 C2' A C 127 OK 1647 1643 1646 1667 C2' U C 128 OK 1669 1665 1668 1687 C2' C C 129 OK 1689 1685 1688 1707 C2' A C 130 OK 1709 1705 1708 1729 C2' U C 131 OK 1731 1727 1730 1749 C2' U C 132 OK 1751 1747 1750 1769 C2' U C 133 OK 1771 1767 1770 1789 C2' A C 134 OK 1791 1787 1790 1811 C2' A C 135 OK 1813 1809 1812 1833 C2' A C 136 OK 1835 1831 1834 1855 C2' G C 137 OK 1857 1853 1856 1878 C2' A C 138 OK 1880 1876 1879 1900 C2' A C 139 OK 1902 1898 1901 1922 C2' A C 140 OK 1924 1920 1923 1944 C2' G C 141 OK 1946 1942 1945 1967 C2' C C 142 OK 1969 1965 1968 1987 C2' G C 143 OK 1989 1985 1988 2010 C2' U C 144 OK 2012 2008 2011 2030 C2' A C 145 OK 2032 2028 2031 2052 C2' A C 146 OK 2054 2050 2053 2074 C2' U C 147 OK 2076 2072 2075 2094 C2' A C 148 OK 2096 2092 2095 2116 C2' G C 149 OK 2118 2114 2117 2139 C2' C C 150 OK 2141 2137 2140 2159 C2' U C 151 OK 2161 2157 2160 2179 C2' C C 152 OK 2181 2177 2180 2199 C2' A C 153 OK 2201 2197 2200 2221 C2' C C 154 OK 2223 2219 2222 2241 C2' U C 155 OK 2243 2239 2242 2261 C2' G C 156 OK 2263 2259 2262 2284 C2' G C 157 OK 2286 2282 2285 2307 C2' U C 158 OK 2309 2305 2308 2337 C2' GTP D 301 OK 2339 2335 2338 2360 C2' C D 302 OK 2362 2358 2361 2380 C2' C D 303 OK 2382 2378 2381 2400 C2' A D 304 OK 2402 2398 2401 2422 C2' G D 305 OK 2424 2420 2423 2445 C2' G D 306 OK 2447 2443 2446 2468 C2' A D 307 OK 2470 2466 2469 2490 C2' U D 308 OK 2492 2488 2491 2510 C2' G D 309 OK 2512 2508 2511 2533 C2' U D 310 OK 2535 2531 2534 2553 C2' A D 311 OK 2555 2551 2554 2575 C2' G D 312 OK 2577 2573 2576 2598 C2' G D 313 OK 2600 2596 2599 2621 C2' C D 314 OK 2623 2619 2622 2641 C2' U D 315 OK 2643 2639 2642 2661 C2' U D 316 OK 2663 2659 2662 2681 C2' A D 317 OK 2683 2679 2682 2703 C2' G D 318 OK 2705 2701 2704 2726 C2' A D 319 OK 2728 2724 2727 2748 C2' A D 320 OK 2750 2746 2749 2770 C2' G D 321 OK 2772 2768 2771 2793 C2' C D 322 OK 2795 2791 2794 2813 C2' A D 323 OK 2815 2811 2814 2835 C2' G D 324 OK 2837 2833 2836 2858 C2' C D 325 OK 2860 2856 2859 2878 C2' C D 326 OK 2880 2876 2879 2898 C2' A D 327 OK 2900 2896 2899 2920 C2' U D 328 OK 2922 2918 2921 2940 C2' C D 329 OK 2942 2938 2941 2960 C2' A D 330 OK 2962 2958 2961 2982 C2' U D 331 OK 2984 2980 2983 3002 C2' U D 332 OK 3004 3000 3003 3022 C2' U D 333 OK 3024 3020 3023 3042 C2' A D 334 OK 3044 3040 3043 3064 C2' A D 335 OK 3066 3062 3065 3086 C2' A D 336 OK 3088 3084 3087 3108 C2' G D 337 OK 3110 3106 3109 3131 C2' A D 338 OK 3133 3129 3132 3153 C2' A D 339 OK 3155 3151 3154 3175 C2' A D 340 OK 3177 3173 3176 3197 C2' G D 341 OK 3199 3195 3198 3220 C2' C D 342 OK 3222 3218 3221 3240 C2' G D 343 OK 3242 3238 3241 3263 C2' U D 344 OK 3265 3261 3264 3283 C2' A D 345 OK 3285 3281 3284 3305 C2' A D 346 OK 3307 3303 3306 3327 C2' U D 347 OK 3329 3325 3328 3347 C2' A D 348 OK 3349 3345 3348 3369 C2' G D 349 OK 3371 3367 3370 3392 C2' C D 350 OK 3394 3390 3393 3412 C2' U D 351 OK 3414 3410 3413 3432 C2' C D 352 OK 3434 3430 3433 3452 C2' A D 353 OK 3454 3450 3453 3474 C2' C D 354 OK 3476 3472 3475 3494 C2' U D 355 OK 3496 3492 3495 3514 C2' G D 356 OK 3516 3512 3515 3537 C2' G D 357 OK 3539 3535 3538 3560 C2' U D 358 OK 3562 3558 3561 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 1082 C3' GTP C 101 OK 1080 1083 1084 1105 C3' C C 102 OK 1103 1106 1107 1125 C3' C C 103 OK 1123 1126 1127 1145 C3' A C 104 OK 1143 1146 1147 1167 C3' G C 105 OK 1165 1168 1169 1190 C3' G C 106 OK 1188 1191 1192 1213 C3' A C 107 OK 1211 1214 1215 1235 C3' U C 108 OK 1233 1236 1237 1255 C3' G C 109 OK 1253 1256 1257 1278 C3' U C 110 OK 1276 1279 1280 1298 C3' A C 111 OK 1296 1299 1300 1320 C3' G C 112 OK 1318 1321 1322 1343 C3' G C 113 OK 1341 1344 1345 1366 C3' C C 114 OK 1364 1367 1368 1386 C3' U C 115 OK 1384 1387 1388 1406 C3' U C 116 OK 1404 1407 1408 1426 C3' A C 117 OK 1424 1427 1428 1448 C3' G C 118 OK 1446 1449 1450 1471 C3' A C 119 OK 1469 1472 1473 1493 C3' A C 120 OK 1491 1494 1495 1515 C3' G C 121 OK 1513 1516 1517 1538 C3' C C 122 OK 1536 1539 1540 1558 C3' A C 123 OK 1556 1559 1560 1580 C3' G C 124 OK 1578 1581 1582 1603 C3' C C 125 OK 1601 1604 1605 1623 C3' C C 126 OK 1621 1624 1625 1643 C3' A C 127 OK 1641 1644 1645 1665 C3' U C 128 OK 1663 1666 1667 1685 C3' C C 129 OK 1683 1686 1687 1705 C3' A C 130 OK 1703 1706 1707 1727 C3' U C 131 OK 1725 1728 1729 1747 C3' U C 132 OK 1745 1748 1749 1767 C3' U C 133 OK 1765 1768 1769 1787 C3' A C 134 OK 1785 1788 1789 1809 C3' A C 135 OK 1807 1810 1811 1831 C3' A C 136 OK 1829 1832 1833 1853 C3' G C 137 OK 1851 1854 1855 1876 C3' A C 138 OK 1874 1877 1878 1898 C3' A C 139 OK 1896 1899 1900 1920 C3' A C 140 OK 1918 1921 1922 1942 C3' G C 141 OK 1940 1943 1944 1965 C3' C C 142 OK 1963 1966 1967 1985 C3' G C 143 OK 1983 1986 1987 2008 C3' U C 144 OK 2006 2009 2010 2028 C3' A C 145 OK 2026 2029 2030 2050 C3' A C 146 OK 2048 2051 2052 2072 C3' U C 147 OK 2070 2073 2074 2092 C3' A C 148 OK 2090 2093 2094 2114 C3' G C 149 OK 2112 2115 2116 2137 C3' C C 150 OK 2135 2138 2139 2157 C3' U C 151 OK 2155 2158 2159 2177 C3' C C 152 OK 2175 2178 2179 2197 C3' A C 153 OK 2195 2198 2199 2219 C3' C C 154 OK 2217 2220 2221 2239 C3' U C 155 OK 2237 2240 2241 2259 C3' G C 156 OK 2257 2260 2261 2282 C3' G C 157 OK 2280 2283 2284 2305 C3' U C 158 OK 2303 2306 2307 2335 C3' GTP D 301 OK 2333 2336 2337 2358 C3' C D 302 OK 2356 2359 2360 2378 C3' C D 303 OK 2376 2379 2380 2398 C3' A D 304 OK 2396 2399 2400 2420 C3' G D 305 OK 2418 2421 2422 2443 C3' G D 306 OK 2441 2444 2445 2466 C3' A D 307 OK 2464 2467 2468 2488 C3' U D 308 OK 2486 2489 2490 2508 C3' G D 309 OK 2506 2509 2510 2531 C3' U D 310 OK 2529 2532 2533 2551 C3' A D 311 OK 2549 2552 2553 2573 C3' G D 312 OK 2571 2574 2575 2596 C3' G D 313 OK 2594 2597 2598 2619 C3' C D 314 OK 2617 2620 2621 2639 C3' U D 315 OK 2637 2640 2641 2659 C3' U D 316 OK 2657 2660 2661 2679 C3' A D 317 OK 2677 2680 2681 2701 C3' G D 318 OK 2699 2702 2703 2724 C3' A D 319 OK 2722 2725 2726 2746 C3' A D 320 OK 2744 2747 2748 2768 C3' G D 321 OK 2766 2769 2770 2791 C3' C D 322 OK 2789 2792 2793 2811 C3' A D 323 OK 2809 2812 2813 2833 C3' G D 324 OK 2831 2834 2835 2856 C3' C D 325 OK 2854 2857 2858 2876 C3' C D 326 OK 2874 2877 2878 2896 C3' A D 327 OK 2894 2897 2898 2918 C3' U D 328 OK 2916 2919 2920 2938 C3' C D 329 OK 2936 2939 2940 2958 C3' A D 330 OK 2956 2959 2960 2980 C3' U D 331 OK 2978 2981 2982 3000 C3' U D 332 OK 2998 3001 3002 3020 C3' U D 333 OK 3018 3021 3022 3040 C3' A D 334 OK 3038 3041 3042 3062 C3' A D 335 OK 3060 3063 3064 3084 C3' A D 336 OK 3082 3085 3086 3106 C3' G D 337 OK 3104 3107 3108 3129 C3' A D 338 OK 3127 3130 3131 3151 C3' A D 339 OK 3149 3152 3153 3173 C3' A D 340 OK 3171 3174 3175 3195 C3' G D 341 OK 3193 3196 3197 3218 C3' C D 342 OK 3216 3219 3220 3238 C3' G D 343 OK 3236 3239 3240 3261 C3' U D 344 OK 3259 3262 3263 3281 C3' A D 345 OK 3279 3282 3283 3303 C3' A D 346 OK 3301 3304 3305 3325 C3' U D 347 OK 3323 3326 3327 3345 C3' A D 348 OK 3343 3346 3347 3367 C3' G D 349 OK 3365 3368 3369 3390 C3' C D 350 OK 3388 3391 3392 3410 C3' U D 351 OK 3408 3411 3412 3430 C3' C D 352 OK 3428 3431 3432 3450 C3' A D 353 OK 3448 3451 3452 3472 C3' C D 354 OK 3470 3473 3474 3492 C3' U D 355 OK 3490 3493 3494 3512 C3' G D 356 OK 3510 3513 3514 3535 C3' G D 357 OK 3533 3536 3537 3558 C3' U D 358 OK 3556 3559 3560 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 1080 C4' GTP C 101 OK 1082 1079 1081 1103 C4' C C 102 OK 1105 1102 1104 1123 C4' C C 103 OK 1125 1122 1124 1143 C4' A C 104 OK 1145 1142 1144 1165 C4' G C 105 OK 1167 1164 1166 1188 C4' G C 106 OK 1190 1187 1189 1211 C4' A C 107 OK 1213 1210 1212 1233 C4' U C 108 OK 1235 1232 1234 1253 C4' G C 109 OK 1255 1252 1254 1276 C4' U C 110 OK 1278 1275 1277 1296 C4' A C 111 OK 1298 1295 1297 1318 C4' G C 112 OK 1320 1317 1319 1341 C4' G C 113 OK 1343 1340 1342 1364 C4' C C 114 OK 1366 1363 1365 1384 C4' U C 115 OK 1386 1383 1385 1404 C4' U C 116 OK 1406 1403 1405 1424 C4' A C 117 OK 1426 1423 1425 1446 C4' G C 118 OK 1448 1445 1447 1469 C4' A C 119 OK 1471 1468 1470 1491 C4' A C 120 OK 1493 1490 1492 1513 C4' G C 121 OK 1515 1512 1514 1536 C4' C C 122 OK 1538 1535 1537 1556 C4' A C 123 OK 1558 1555 1557 1578 C4' G C 124 OK 1580 1577 1579 1601 C4' C C 125 OK 1603 1600 1602 1621 C4' C C 126 OK 1623 1620 1622 1641 C4' A C 127 OK 1643 1640 1642 1663 C4' U C 128 OK 1665 1662 1664 1683 C4' C C 129 OK 1685 1682 1684 1703 C4' A C 130 OK 1705 1702 1704 1725 C4' U C 131 OK 1727 1724 1726 1745 C4' U C 132 OK 1747 1744 1746 1765 C4' U C 133 OK 1767 1764 1766 1785 C4' A C 134 OK 1787 1784 1786 1807 C4' A C 135 OK 1809 1806 1808 1829 C4' A C 136 OK 1831 1828 1830 1851 C4' G C 137 OK 1853 1850 1852 1874 C4' A C 138 OK 1876 1873 1875 1896 C4' A C 139 OK 1898 1895 1897 1918 C4' A C 140 OK 1920 1917 1919 1940 C4' G C 141 OK 1942 1939 1941 1963 C4' C C 142 OK 1965 1962 1964 1983 C4' G C 143 OK 1985 1982 1984 2006 C4' U C 144 OK 2008 2005 2007 2026 C4' A C 145 OK 2028 2025 2027 2048 C4' A C 146 OK 2050 2047 2049 2070 C4' U C 147 OK 2072 2069 2071 2090 C4' A C 148 OK 2092 2089 2091 2112 C4' G C 149 OK 2114 2111 2113 2135 C4' C C 150 OK 2137 2134 2136 2155 C4' U C 151 OK 2157 2154 2156 2175 C4' C C 152 OK 2177 2174 2176 2195 C4' A C 153 OK 2197 2194 2196 2217 C4' C C 154 OK 2219 2216 2218 2237 C4' U C 155 OK 2239 2236 2238 2257 C4' G C 156 OK 2259 2256 2258 2280 C4' G C 157 OK 2282 2279 2281 2303 C4' U C 158 OK 2305 2302 2304 2333 C4' GTP D 301 OK 2335 2332 2334 2356 C4' C D 302 OK 2358 2355 2357 2376 C4' C D 303 OK 2378 2375 2377 2396 C4' A D 304 OK 2398 2395 2397 2418 C4' G D 305 OK 2420 2417 2419 2441 C4' G D 306 OK 2443 2440 2442 2464 C4' A D 307 OK 2466 2463 2465 2486 C4' U D 308 OK 2488 2485 2487 2506 C4' G D 309 OK 2508 2505 2507 2529 C4' U D 310 OK 2531 2528 2530 2549 C4' A D 311 OK 2551 2548 2550 2571 C4' G D 312 OK 2573 2570 2572 2594 C4' G D 313 OK 2596 2593 2595 2617 C4' C D 314 OK 2619 2616 2618 2637 C4' U D 315 OK 2639 2636 2638 2657 C4' U D 316 OK 2659 2656 2658 2677 C4' A D 317 OK 2679 2676 2678 2699 C4' G D 318 OK 2701 2698 2700 2722 C4' A D 319 OK 2724 2721 2723 2744 C4' A D 320 OK 2746 2743 2745 2766 C4' G D 321 OK 2768 2765 2767 2789 C4' C D 322 OK 2791 2788 2790 2809 C4' A D 323 OK 2811 2808 2810 2831 C4' G D 324 OK 2833 2830 2832 2854 C4' C D 325 OK 2856 2853 2855 2874 C4' C D 326 OK 2876 2873 2875 2894 C4' A D 327 OK 2896 2893 2895 2916 C4' U D 328 OK 2918 2915 2917 2936 C4' C D 329 OK 2938 2935 2937 2956 C4' A D 330 OK 2958 2955 2957 2978 C4' U D 331 OK 2980 2977 2979 2998 C4' U D 332 OK 3000 2997 2999 3018 C4' U D 333 OK 3020 3017 3019 3038 C4' A D 334 OK 3040 3037 3039 3060 C4' A D 335 OK 3062 3059 3061 3082 C4' A D 336 OK 3084 3081 3083 3104 C4' G D 337 OK 3106 3103 3105 3127 C4' A D 338 OK 3129 3126 3128 3149 C4' A D 339 OK 3151 3148 3150 3171 C4' A D 340 OK 3173 3170 3172 3193 C4' G D 341 OK 3195 3192 3194 3216 C4' C D 342 OK 3218 3215 3217 3236 C4' G D 343 OK 3238 3235 3237 3259 C4' U D 344 OK 3261 3258 3260 3279 C4' A D 345 OK 3281 3278 3280 3301 C4' A D 346 OK 3303 3300 3302 3323 C4' U D 347 OK 3325 3322 3324 3343 C4' A D 348 OK 3345 3342 3344 3365 C4' G D 349 OK 3367 3364 3366 3388 C4' C D 350 OK 3390 3387 3389 3408 C4' U D 351 OK 3410 3407 3409 3428 C4' C D 352 OK 3430 3427 3429 3448 C4' A D 353 OK 3450 3447 3449 3470 C4' C D 354 OK 3472 3469 3471 3490 C4' U D 355 OK 3492 3489 3491 3510 C4' G D 356 OK 3512 3509 3511 3533 C4' G D 357 OK 3535 3532 3534 3556 C4' U D 358 OK 3558 3555 3557 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 1079 C5' GTP C 101 1078 1080 1102 C5' C C 102 1101 1103 1122 C5' C C 103 1121 1123 1142 C5' A C 104 1141 1143 1164 C5' G C 105 1163 1165 1187 C5' G C 106 1186 1188 1210 C5' A C 107 1209 1211 1232 C5' U C 108 1231 1233 1252 C5' G C 109 1251 1253 1275 C5' U C 110 1274 1276 1295 C5' A C 111 1294 1296 1317 C5' G C 112 1316 1318 1340 C5' G C 113 1339 1341 1363 C5' C C 114 1362 1364 1383 C5' U C 115 1382 1384 1403 C5' U C 116 1402 1404 1423 C5' A C 117 1422 1424 1445 C5' G C 118 1444 1446 1468 C5' A C 119 1467 1469 1490 C5' A C 120 1489 1491 1512 C5' G C 121 1511 1513 1535 C5' C C 122 1534 1536 1555 C5' A C 123 1554 1556 1577 C5' G C 124 1576 1578 1600 C5' C C 125 1599 1601 1620 C5' C C 126 1619 1621 1640 C5' A C 127 1639 1641 1662 C5' U C 128 1661 1663 1682 C5' C C 129 1681 1683 1702 C5' A C 130 1701 1703 1724 C5' U C 131 1723 1725 1744 C5' U C 132 1743 1745 1764 C5' U C 133 1763 1765 1784 C5' A C 134 1783 1785 1806 C5' A C 135 1805 1807 1828 C5' A C 136 1827 1829 1850 C5' G C 137 1849 1851 1873 C5' A C 138 1872 1874 1895 C5' A C 139 1894 1896 1917 C5' A C 140 1916 1918 1939 C5' G C 141 1938 1940 1962 C5' C C 142 1961 1963 1982 C5' G C 143 1981 1983 2005 C5' U C 144 2004 2006 2025 C5' A C 145 2024 2026 2047 C5' A C 146 2046 2048 2069 C5' U C 147 2068 2070 2089 C5' A C 148 2088 2090 2111 C5' G C 149 2110 2112 2134 C5' C C 150 2133 2135 2154 C5' U C 151 2153 2155 2174 C5' C C 152 2173 2175 2194 C5' A C 153 2193 2195 2216 C5' C C 154 2215 2217 2236 C5' U C 155 2235 2237 2256 C5' G C 156 2255 2257 2279 C5' G C 157 2278 2280 2302 C5' U C 158 2301 2303 2332 C5' GTP D 301 2331 2333 2355 C5' C D 302 2354 2356 2375 C5' C D 303 2374 2376 2395 C5' A D 304 2394 2396 2417 C5' G D 305 2416 2418 2440 C5' G D 306 2439 2441 2463 C5' A D 307 2462 2464 2485 C5' U D 308 2484 2486 2505 C5' G D 309 2504 2506 2528 C5' U D 310 2527 2529 2548 C5' A D 311 2547 2549 2570 C5' G D 312 2569 2571 2593 C5' G D 313 2592 2594 2616 C5' C D 314 2615 2617 2636 C5' U D 315 2635 2637 2656 C5' U D 316 2655 2657 2676 C5' A D 317 2675 2677 2698 C5' G D 318 2697 2699 2721 C5' A D 319 2720 2722 2743 C5' A D 320 2742 2744 2765 C5' G D 321 2764 2766 2788 C5' C D 322 2787 2789 2808 C5' A D 323 2807 2809 2830 C5' G D 324 2829 2831 2853 C5' C D 325 2852 2854 2873 C5' C D 326 2872 2874 2893 C5' A D 327 2892 2894 2915 C5' U D 328 2914 2916 2935 C5' C D 329 2934 2936 2955 C5' A D 330 2954 2956 2977 C5' U D 331 2976 2978 2997 C5' U D 332 2996 2998 3017 C5' U D 333 3016 3018 3037 C5' A D 334 3036 3038 3059 C5' A D 335 3058 3060 3081 C5' A D 336 3080 3082 3103 C5' G D 337 3102 3104 3126 C5' A D 338 3125 3127 3148 C5' A D 339 3147 3149 3170 C5' A D 340 3169 3171 3192 C5' G D 341 3191 3193 3215 C5' C D 342 3214 3216 3235 C5' G D 343 3234 3236 3258 C5' U D 344 3257 3259 3278 C5' A D 345 3277 3279 3300 C5' A D 346 3299 3301 3322 C5' U D 347 3321 3323 3342 C5' A D 348 3341 3343 3364 C5' G D 349 3363 3365 3387 C5' C D 350 3386 3388 3407 C5' U D 351 3406 3408 3427 C5' C D 352 3426 3428 3447 C5' A D 353 3446 3448 3469 C5' C D 354 3468 3470 3489 C5' U D 355 3488 3490 3509 C5' G D 356 3508 3510 3532 C5' G D 357 3531 3533 3555 C5' U D 358 3554 3556 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 1098 P C C 102 distorted distorted 1083 1099 1100 1101 1118 P C C 103 distorted distorted 1106 1119 1120 1121 1138 P A C 104 distorted distorted 1126 1139 1140 1141 1160 P G C 105 distorted distorted 1146 1161 1162 1163 1183 P G C 106 distorted distorted 1168 1184 1185 1186 1206 P A C 107 distorted distorted 1191 1207 1208 1209 1228 P U C 108 distorted distorted 1214 1229 1230 1231 1248 P G C 109 distorted distorted 1236 1249 1250 1251 1271 P U C 110 distorted distorted 1256 1272 1273 1274 1291 P A C 111 distorted distorted 1279 1292 1293 1294 1313 P G C 112 distorted distorted 1299 1314 1315 1316 1336 P G C 113 distorted distorted 1321 1337 1338 1339 1359 P C C 114 distorted distorted 1344 1360 1361 1362 1379 P U C 115 distorted distorted 1367 1380 1381 1382 1399 P U C 116 distorted distorted 1387 1400 1401 1402 1419 P A C 117 distorted distorted 1407 1420 1421 1422 1441 P G C 118 distorted distorted 1427 1442 1443 1444 1464 P A C 119 distorted distorted 1449 1465 1466 1467 1486 P A C 120 distorted distorted 1472 1487 1488 1489 1508 P G C 121 distorted distorted 1494 1509 1510 1511 1531 P C C 122 distorted distorted 1516 1532 1533 1534 1551 P A C 123 distorted distorted 1539 1552 1553 1554 1573 P G C 124 distorted distorted 1559 1574 1575 1576 1596 P C C 125 distorted distorted 1581 1597 1598 1599 1616 P C C 126 distorted distorted 1604 1617 1618 1619 1636 P A C 127 distorted distorted 1624 1637 1638 1639 1658 P U C 128 distorted distorted 1644 1659 1660 1661 1678 P C C 129 distorted distorted 1666 1679 1680 1681 1698 P A C 130 distorted distorted 1686 1699 1700 1701 1720 P U C 131 distorted distorted 1706 1721 1722 1723 1740 P U C 132 distorted distorted 1728 1741 1742 1743 1760 P U C 133 distorted distorted 1748 1761 1762 1763 1780 P A C 134 distorted distorted 1768 1781 1782 1783 1802 P A C 135 distorted distorted 1788 1803 1804 1805 1824 P A C 136 distorted distorted 1810 1825 1826 1827 1846 P G C 137 distorted distorted 1832 1847 1848 1849 1869 P A C 138 distorted distorted 1854 1870 1871 1872 1891 P A C 139 distorted distorted 1877 1892 1893 1894 1913 P A C 140 distorted distorted 1899 1914 1915 1916 1935 P G C 141 distorted distorted 1921 1936 1937 1938 1958 P C C 142 distorted distorted 1943 1959 1960 1961 1978 P G C 143 distorted distorted 1966 1979 1980 1981 2001 P U C 144 distorted distorted 1986 2002 2003 2004 2021 P A C 145 distorted distorted 2009 2022 2023 2024 2043 P A C 146 distorted distorted 2029 2044 2045 2046 2065 P U C 147 distorted distorted 2051 2066 2067 2068 2085 P A C 148 distorted distorted 2073 2086 2087 2088 2107 P G C 149 distorted distorted 2093 2108 2109 2110 2130 P C C 150 distorted distorted 2115 2131 2132 2133 2150 P U C 151 distorted distorted 2138 2151 2152 2153 2170 P C C 152 distorted distorted 2158 2171 2172 2173 2190 P A C 153 distorted distorted 2178 2191 2192 2193 2212 P C C 154 distorted distorted 2198 2213 2214 2215 2232 P U C 155 distorted distorted 2220 2233 2234 2235 2252 P G C 156 distorted distorted 2240 2253 2254 2255 2275 P G C 157 distorted distorted 2260 2276 2277 2278 2298 P U C 158 distorted distorted 2283 2299 2300 2301 2351 P C D 302 distorted distorted 2336 2352 2353 2354 2371 P C D 303 distorted distorted 2359 2372 2373 2374 2391 P A D 304 distorted distorted 2379 2392 2393 2394 2413 P G D 305 distorted distorted 2399 2414 2415 2416 2436 P G D 306 distorted distorted 2421 2437 2438 2439 2459 P A D 307 distorted distorted 2444 2460 2461 2462 2481 P U D 308 distorted distorted 2467 2482 2483 2484 2501 P G D 309 distorted distorted 2489 2502 2503 2504 2524 P U D 310 distorted distorted 2509 2525 2526 2527 2544 P A D 311 distorted distorted 2532 2545 2546 2547 2566 P G D 312 distorted distorted 2552 2567 2568 2569 2589 P G D 313 distorted distorted 2574 2590 2591 2592 2612 P C D 314 distorted distorted 2597 2613 2614 2615 2632 P U D 315 distorted distorted 2620 2633 2634 2635 2652 P U D 316 distorted distorted 2640 2653 2654 2655 2672 P A D 317 distorted distorted 2660 2673 2674 2675 2694 P G D 318 distorted distorted 2680 2695 2696 2697 2717 P A D 319 distorted distorted 2702 2718 2719 2720 2739 P A D 320 distorted distorted 2725 2740 2741 2742 2761 P G D 321 distorted distorted 2747 2762 2763 2764 2784 P C D 322 distorted distorted 2769 2785 2786 2787 2804 P A D 323 distorted distorted 2792 2805 2806 2807 2826 P G D 324 distorted distorted 2812 2827 2828 2829 2849 P C D 325 distorted distorted 2834 2850 2851 2852 2869 P C D 326 distorted distorted 2857 2870 2871 2872 2889 P A D 327 distorted distorted 2877 2890 2891 2892 2911 P U D 328 distorted distorted 2897 2912 2913 2914 2931 P C D 329 distorted distorted 2919 2932 2933 2934 2951 P A D 330 distorted distorted 2939 2952 2953 2954 2973 P U D 331 distorted distorted 2959 2974 2975 2976 2993 P U D 332 distorted distorted 2981 2994 2995 2996 3013 P U D 333 distorted distorted 3001 3014 3015 3016 3033 P A D 334 distorted distorted 3021 3034 3035 3036 3055 P A D 335 distorted distorted 3041 3056 3057 3058 3077 P A D 336 distorted distorted 3063 3078 3079 3080 3099 P G D 337 distorted distorted 3085 3100 3101 3102 3122 P A D 338 distorted distorted 3107 3123 3124 3125 3144 P A D 339 distorted distorted 3130 3145 3146 3147 3166 P A D 340 distorted distorted 3152 3167 3168 3169 3188 P G D 341 distorted distorted 3174 3189 3190 3191 3211 P C D 342 distorted distorted 3196 3212 3213 3214 3231 P G D 343 distorted distorted 3219 3232 3233 3234 3254 P U D 344 distorted distorted 3239 3255 3256 3257 3274 P A D 345 distorted distorted 3262 3275 3276 3277 3296 P A D 346 distorted distorted 3282 3297 3298 3299 3318 P U D 347 distorted distorted 3304 3319 3320 3321 3338 P A D 348 distorted distorted 3326 3339 3340 3341 3360 P G D 349 distorted distorted 3346 3361 3362 3363 3383 P C D 350 distorted distorted 3368 3384 3385 3386 3403 P U D 351 distorted distorted 3391 3404 3405 3406 3423 P C D 352 distorted distorted 3411 3424 3425 3426 3443 P A D 353 distorted distorted 3431 3444 3445 3446 3465 P C D 354 distorted distorted 3451 3466 3467 3468 3485 P U D 355 distorted distorted 3473 3486 3487 3488 3505 P G D 356 distorted distorted 3493 3506 3507 3508 3528 P G D 357 distorted distorted 3513 3529 3530 3531 3551 P U D 358 distorted distorted 3536 3552 3553 3554 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