ID code: '1C2X' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' U C 1 beta 8 14 11 33 C1' G C 2 beta 28 34 31 56 C1' C C 3 beta 51 57 54 76 C1' C C 4 beta 71 77 74 96 C1' U C 5 beta 91 97 94 116 C1' G C 6 beta 111 117 114 139 C1' G C 7 beta 134 140 137 162 C1' C C 8 beta 157 163 160 182 C1' G C 9 beta 177 183 180 205 C1' G C 10 beta 200 206 203 228 C1' C C 11 beta 223 229 226 248 C1' C C 12 beta 243 249 246 268 C1' G C 13 beta 263 269 266 291 C1' U C 14 beta 286 292 289 311 C1' A C 15 beta 306 312 309 333 C1' G C 16 beta 328 334 331 356 C1' C C 17 beta 351 357 354 376 C1' G C 18 beta 371 377 374 399 C1' C C 19 beta 394 400 397 419 C1' G C 20 beta 414 420 417 442 C1' G C 21 beta 437 443 440 465 C1' U C 22 beta 460 466 463 485 C1' G C 23 beta 480 486 483 508 C1' G C 24 beta 503 509 506 531 C1' U C 25 beta 526 532 529 551 C1' C C 26 beta 546 552 549 571 C1' C C 27 beta 566 572 569 591 C1' C C 28 beta 586 592 589 611 C1' A C 29 beta 606 612 609 633 C1' C C 30 beta 628 634 631 653 C1' C C 31 beta 648 654 651 673 C1' U C 32 beta 668 674 671 693 C1' G C 33 beta 688 694 691 716 C1' A C 34 beta 711 717 714 738 C1' C C 35 beta 733 739 736 758 C1' C C 36 beta 753 759 756 780 C1' C C 37 beta 775 781 778 800 C1' C C 38 beta 795 801 798 820 C1' A C 39 beta 815 821 818 842 C1' U C 40 beta 837 843 840 862 C1' G C 41 beta 857 863 860 885 C1' C C 42 beta 880 886 883 905 C1' C C 43 beta 900 906 903 925 C1' G C 44 beta 920 926 923 948 C1' A C 45 beta 943 949 946 970 C1' A C 46 beta 965 971 968 992 C1' C C 47 beta 987 993 990 1012 C1' U C 48 beta 1007 1013 1010 1032 C1' C C 49 beta 1027 1033 1030 1052 C1' A C 50 beta 1047 1053 1050 1074 C1' G C 51 beta 1069 1075 1072 1097 C1' A C 52 beta 1092 1098 1095 1119 C1' A C 53 beta 1114 1120 1117 1141 C1' G C 54 beta 1136 1142 1139 1164 C1' U C 55 beta 1159 1165 1162 1184 C1' G C 56 beta 1179 1185 1182 1207 C1' A C 57 beta 1202 1208 1205 1229 C1' A C 58 beta 1224 1230 1227 1251 C1' A C 59 beta 1246 1252 1249 1273 C1' C C 60 beta 1268 1274 1271 1293 C1' G C 61 beta 1288 1294 1291 1316 C1' C C 62 beta 1311 1317 1314 1336 C1' C C 63 beta 1331 1337 1334 1356 C1' G C 64 beta 1351 1357 1354 1381 C1' U C 65 beta 1376 1382 1379 1401 C1' A C 66 beta 1396 1402 1399 1423 C1' G C 67 beta 1418 1424 1421 1446 C1' C C 68 beta 1441 1447 1444 1466 C1' G C 69 beta 1461 1467 1464 1489 C1' C C 70 beta 1484 1490 1487 1509 C1' C C 71 beta 1504 1510 1507 1529 C1' G C 72 beta 1524 1530 1527 1552 C1' A C 73 beta 1547 1553 1550 1574 C1' U C 74 beta 1569 1575 1572 1594 C1' G C 75 beta 1589 1595 1592 1617 C1' G C 76 beta 1612 1618 1615 1640 C1' U C 77 beta 1635 1641 1638 1660 C1' A C 78 beta 1655 1661 1658 1682 C1' G C 79 beta 1677 1683 1680 1705 C1' U C 80 beta 1700 1706 1703 1725 C1' G C 81 beta 1720 1726 1723 1748 C1' U C 82 beta 1743 1749 1746 1768 C1' G C 83 beta 1763 1769 1766 1791 C1' G C 84 beta 1786 1792 1789 1814 C1' G C 85 beta 1809 1815 1812 1837 C1' G C 86 beta 1832 1838 1835 1860 C1' U C 87 beta 1855 1861 1858 1880 C1' C C 88 beta 1875 1881 1878 1900 C1' U C 89 beta 1895 1901 1898 1920 C1' C C 90 beta 1915 1921 1918 1940 C1' C C 91 beta 1935 1941 1938 1960 C1' C C 92 beta 1955 1961 1958 1980 C1' C C 93 beta 1975 1981 1978 2000 C1' A C 94 beta 1995 2001 1998 2022 C1' U C 95 beta 2017 2023 2020 2042 C1' G C 96 beta 2037 2043 2040 2065 C1' C C 97 beta 2060 2066 2063 2085 C1' G C 98 beta 2080 2086 2083 2108 C1' A C 99 beta 2103 2109 2106 2130 C1' G C 100 beta 2125 2131 2128 2153 C1' A C 101 beta 2148 2154 2151 2175 C1' G C 102 beta 2170 2176 2173 2198 C1' U C 103 beta 2193 2199 2196 2218 C1' A C 104 beta 2213 2219 2216 2240 C1' G C 105 beta 2235 2241 2238 2263 C1' G C 106 beta 2258 2264 2261 2286 C1' G C 107 beta 2281 2287 2284 2309 C1' A C 108 beta 2304 2310 2307 2331 C1' A C 109 beta 2326 2332 2329 2353 C1' C C 110 beta 2348 2354 2351 2373 C1' U C 111 beta 2368 2374 2371 2393 C1' G C 112 beta 2388 2394 2391 2416 C1' C C 113 beta 2411 2417 2414 2436 C1' C C 114 beta 2431 2437 2434 2456 C1' A C 115 beta 2451 2457 2454 2478 C1' G C 116 beta 2473 2479 2476 2501 C1' G C 117 beta 2496 2502 2499 2524 C1' C C 118 beta 2519 2525 2522 2544 C1' A C 119 beta 2539 2545 2542 2568 C1' U C 120 beta 2563 2569 2566 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' U C 1 OK 13 9 12 31 C2' G C 2 OK 33 29 32 54 C2' C C 3 OK 56 52 55 74 C2' C C 4 OK 76 72 75 94 C2' U C 5 OK 96 92 95 114 C2' G C 6 OK 116 112 115 137 C2' G C 7 OK 139 135 138 160 C2' C C 8 OK 162 158 161 180 C2' G C 9 OK 182 178 181 203 C2' G C 10 OK 205 201 204 226 C2' C C 11 OK 228 224 227 246 C2' C C 12 OK 248 244 247 266 C2' G C 13 OK 268 264 267 289 C2' U C 14 OK 291 287 290 309 C2' A C 15 OK 311 307 310 331 C2' G C 16 OK 333 329 332 354 C2' C C 17 OK 356 352 355 374 C2' G C 18 OK 376 372 375 397 C2' C C 19 OK 399 395 398 417 C2' G C 20 OK 419 415 418 440 C2' G C 21 OK 442 438 441 463 C2' U C 22 OK 465 461 464 483 C2' G C 23 OK 485 481 484 506 C2' G C 24 OK 508 504 507 529 C2' U C 25 OK 531 527 530 549 C2' C C 26 OK 551 547 550 569 C2' C C 27 OK 571 567 570 589 C2' C C 28 OK 591 587 590 609 C2' A C 29 OK 611 607 610 631 C2' C C 30 OK 633 629 632 651 C2' C C 31 OK 653 649 652 671 C2' U C 32 OK 673 669 672 691 C2' G C 33 OK 693 689 692 714 C2' A C 34 OK 716 712 715 736 C2' C C 35 OK 738 734 737 756 C2' C C 36 OK 758 754 757 778 C2' C C 37 OK 780 776 779 798 C2' C C 38 OK 800 796 799 818 C2' A C 39 OK 820 816 819 840 C2' U C 40 OK 842 838 841 860 C2' G C 41 OK 862 858 861 883 C2' C C 42 OK 885 881 884 903 C2' C C 43 OK 905 901 904 923 C2' G C 44 OK 925 921 924 946 C2' A C 45 OK 948 944 947 968 C2' A C 46 OK 970 966 969 990 C2' C C 47 OK 992 988 991 1010 C2' U C 48 OK 1012 1008 1011 1030 C2' C C 49 OK 1032 1028 1031 1050 C2' A C 50 OK 1052 1048 1051 1072 C2' G C 51 OK 1074 1070 1073 1095 C2' A C 52 OK 1097 1093 1096 1117 C2' A C 53 OK 1119 1115 1118 1139 C2' G C 54 OK 1141 1137 1140 1162 C2' U C 55 OK 1164 1160 1163 1182 C2' G C 56 OK 1184 1180 1183 1205 C2' A C 57 OK 1207 1203 1206 1227 C2' A C 58 OK 1229 1225 1228 1249 C2' A C 59 OK 1251 1247 1250 1271 C2' C C 60 OK 1273 1269 1272 1291 C2' G C 61 OK 1293 1289 1292 1314 C2' C C 62 OK 1316 1312 1315 1334 C2' C C 63 OK 1336 1332 1335 1354 C2' G C 64 OK 1356 1352 1355 1379 C2' U C 65 OK 1381 1377 1380 1399 C2' A C 66 OK 1401 1397 1400 1421 C2' G C 67 OK 1423 1419 1422 1444 C2' C C 68 OK 1446 1442 1445 1464 C2' G C 69 OK 1466 1462 1465 1487 C2' C C 70 OK 1489 1485 1488 1507 C2' C C 71 OK 1509 1505 1508 1527 C2' G C 72 OK 1529 1525 1528 1550 C2' A C 73 OK 1552 1548 1551 1572 C2' U C 74 OK 1574 1570 1573 1592 C2' G C 75 OK 1594 1590 1593 1615 C2' G C 76 OK 1617 1613 1616 1638 C2' U C 77 OK 1640 1636 1639 1658 C2' A C 78 OK 1660 1656 1659 1680 C2' G C 79 OK 1682 1678 1681 1703 C2' U C 80 OK 1705 1701 1704 1723 C2' G C 81 OK 1725 1721 1724 1746 C2' U C 82 OK 1748 1744 1747 1766 C2' G C 83 OK 1768 1764 1767 1789 C2' G C 84 OK 1791 1787 1790 1812 C2' G C 85 OK 1814 1810 1813 1835 C2' G C 86 OK 1837 1833 1836 1858 C2' U C 87 OK 1860 1856 1859 1878 C2' C C 88 OK 1880 1876 1879 1898 C2' U C 89 OK 1900 1896 1899 1918 C2' C C 90 OK 1920 1916 1919 1938 C2' C C 91 OK 1940 1936 1939 1958 C2' C C 92 OK 1960 1956 1959 1978 C2' C C 93 OK 1980 1976 1979 1998 C2' A C 94 OK 2000 1996 1999 2020 C2' U C 95 OK 2022 2018 2021 2040 C2' G C 96 OK 2042 2038 2041 2063 C2' C C 97 OK 2065 2061 2064 2083 C2' G C 98 OK 2085 2081 2084 2106 C2' A C 99 OK 2108 2104 2107 2128 C2' G C 100 OK 2130 2126 2129 2151 C2' A C 101 OK 2153 2149 2152 2173 C2' G C 102 OK 2175 2171 2174 2196 C2' U C 103 OK 2198 2194 2197 2216 C2' A C 104 OK 2218 2214 2217 2238 C2' G C 105 OK 2240 2236 2239 2261 C2' G C 106 OK 2263 2259 2262 2284 C2' G C 107 OK 2286 2282 2285 2307 C2' A C 108 OK 2309 2305 2308 2329 C2' A C 109 OK 2331 2327 2330 2351 C2' C C 110 OK 2353 2349 2352 2371 C2' U C 111 OK 2373 2369 2372 2391 C2' G C 112 OK 2393 2389 2392 2414 C2' C C 113 OK 2416 2412 2415 2434 C2' C C 114 OK 2436 2432 2435 2454 C2' A C 115 OK 2456 2452 2455 2476 C2' G C 116 OK 2478 2474 2477 2499 C2' G C 117 OK 2501 2497 2500 2522 C2' C C 118 OK 2524 2520 2523 2542 C2' A C 119 OK 2544 2540 2543 2566 C2' U C 120 OK 2568 2564 2567 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' U C 1 OK 7 10 11 29 C3' G C 2 OK 27 30 31 52 C3' C C 3 OK 50 53 54 72 C3' C C 4 OK 70 73 74 92 C3' U C 5 OK 90 93 94 112 C3' G C 6 OK 110 113 114 135 C3' G C 7 OK 133 136 137 158 C3' C C 8 OK 156 159 160 178 C3' G C 9 OK 176 179 180 201 C3' G C 10 OK 199 202 203 224 C3' C C 11 OK 222 225 226 244 C3' C C 12 OK 242 245 246 264 C3' G C 13 OK 262 265 266 287 C3' U C 14 OK 285 288 289 307 C3' A C 15 OK 305 308 309 329 C3' G C 16 OK 327 330 331 352 C3' C C 17 OK 350 353 354 372 C3' G C 18 OK 370 373 374 395 C3' C C 19 OK 393 396 397 415 C3' G C 20 OK 413 416 417 438 C3' G C 21 OK 436 439 440 461 C3' U C 22 OK 459 462 463 481 C3' G C 23 OK 479 482 483 504 C3' G C 24 OK 502 505 506 527 C3' U C 25 OK 525 528 529 547 C3' C C 26 OK 545 548 549 567 C3' C C 27 OK 565 568 569 587 C3' C C 28 OK 585 588 589 607 C3' A C 29 OK 605 608 609 629 C3' C C 30 OK 627 630 631 649 C3' C C 31 OK 647 650 651 669 C3' U C 32 OK 667 670 671 689 C3' G C 33 OK 687 690 691 712 C3' A C 34 OK 710 713 714 734 C3' C C 35 OK 732 735 736 754 C3' C C 36 OK 752 755 756 776 C3' C C 37 OK 774 777 778 796 C3' C C 38 OK 794 797 798 816 C3' A C 39 OK 814 817 818 838 C3' U C 40 OK 836 839 840 858 C3' G C 41 OK 856 859 860 881 C3' C C 42 OK 879 882 883 901 C3' C C 43 OK 899 902 903 921 C3' G C 44 OK 919 922 923 944 C3' A C 45 OK 942 945 946 966 C3' A C 46 OK 964 967 968 988 C3' C C 47 OK 986 989 990 1008 C3' U C 48 OK 1006 1009 1010 1028 C3' C C 49 OK 1026 1029 1030 1048 C3' A C 50 OK 1046 1049 1050 1070 C3' G C 51 OK 1068 1071 1072 1093 C3' A C 52 OK 1091 1094 1095 1115 C3' A C 53 OK 1113 1116 1117 1137 C3' G C 54 OK 1135 1138 1139 1160 C3' U C 55 OK 1158 1161 1162 1180 C3' G C 56 distorted 1178 1181 1182 1203 C3' A C 57 OK 1201 1204 1205 1225 C3' A C 58 OK 1223 1226 1227 1247 C3' A C 59 OK 1245 1248 1249 1269 C3' C C 60 OK 1267 1270 1271 1289 C3' G C 61 OK 1287 1290 1291 1312 C3' C C 62 OK 1310 1313 1314 1332 C3' C C 63 OK 1330 1333 1334 1352 C3' G C 64 OK 1350 1353 1354 1377 C3' U C 65 OK 1375 1378 1379 1397 C3' A C 66 OK 1395 1398 1399 1419 C3' G C 67 OK 1417 1420 1421 1442 C3' C C 68 OK 1440 1443 1444 1462 C3' G C 69 OK 1460 1463 1464 1485 C3' C C 70 OK 1483 1486 1487 1505 C3' C C 71 OK 1503 1506 1507 1525 C3' G C 72 OK 1523 1526 1527 1548 C3' A C 73 OK 1546 1549 1550 1570 C3' U C 74 OK 1568 1571 1572 1590 C3' G C 75 OK 1588 1591 1592 1613 C3' G C 76 OK 1611 1614 1615 1636 C3' U C 77 OK 1634 1637 1638 1656 C3' A C 78 OK 1654 1657 1658 1678 C3' G C 79 OK 1676 1679 1680 1701 C3' U C 80 OK 1699 1702 1703 1721 C3' G C 81 OK 1719 1722 1723 1744 C3' U C 82 OK 1742 1745 1746 1764 C3' G C 83 OK 1762 1765 1766 1787 C3' G C 84 OK 1785 1788 1789 1810 C3' G C 85 OK 1808 1811 1812 1833 C3' G C 86 OK 1831 1834 1835 1856 C3' U C 87 OK 1854 1857 1858 1876 C3' C C 88 OK 1874 1877 1878 1896 C3' U C 89 OK 1894 1897 1898 1916 C3' C C 90 OK 1914 1917 1918 1936 C3' C C 91 OK 1934 1937 1938 1956 C3' C C 92 OK 1954 1957 1958 1976 C3' C C 93 OK 1974 1977 1978 1996 C3' A C 94 OK 1994 1997 1998 2018 C3' U C 95 OK 2016 2019 2020 2038 C3' G C 96 OK 2036 2039 2040 2061 C3' C C 97 OK 2059 2062 2063 2081 C3' G C 98 OK 2079 2082 2083 2104 C3' A C 99 OK 2102 2105 2106 2126 C3' G C 100 OK 2124 2127 2128 2149 C3' A C 101 OK 2147 2150 2151 2171 C3' G C 102 OK 2169 2172 2173 2194 C3' U C 103 OK 2192 2195 2196 2214 C3' A C 104 OK 2212 2215 2216 2236 C3' G C 105 OK 2234 2237 2238 2259 C3' G C 106 OK 2257 2260 2261 2282 C3' G C 107 OK 2280 2283 2284 2305 C3' A C 108 OK 2303 2306 2307 2327 C3' A C 109 OK 2325 2328 2329 2349 C3' C C 110 OK 2347 2350 2351 2369 C3' U C 111 OK 2367 2370 2371 2389 C3' G C 112 OK 2387 2390 2391 2412 C3' C C 113 OK 2410 2413 2414 2432 C3' C C 114 OK 2430 2433 2434 2452 C3' A C 115 OK 2450 2453 2454 2474 C3' G C 116 OK 2472 2475 2476 2497 C3' G C 117 OK 2495 2498 2499 2520 C3' C C 118 OK 2518 2521 2522 2540 C3' A C 119 OK 2538 2541 2542 2564 C3' U C 120 OK 2562 2565 2566 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' U C 1 OK 9 6 8 27 C4' G C 2 OK 29 26 28 50 C4' C C 3 OK 52 49 51 70 C4' C C 4 OK 72 69 71 90 C4' U C 5 OK 92 89 91 110 C4' G C 6 OK 112 109 111 133 C4' G C 7 OK 135 132 134 156 C4' C C 8 OK 158 155 157 176 C4' G C 9 OK 178 175 177 199 C4' G C 10 OK 201 198 200 222 C4' C C 11 distorted 224 221 223 242 C4' C C 12 distorted 244 241 243 262 C4' G C 13 OK 264 261 263 285 C4' U C 14 OK 287 284 286 305 C4' A C 15 distorted 307 304 306 327 C4' G C 16 OK 329 326 328 350 C4' C C 17 OK 352 349 351 370 C4' G C 18 OK 372 369 371 393 C4' C C 19 OK 395 392 394 413 C4' G C 20 OK 415 412 414 436 C4' G C 21 OK 438 435 437 459 C4' U C 22 OK 461 458 460 479 C4' G C 23 OK 481 478 480 502 C4' G C 24 distorted 504 501 503 525 C4' U C 25 OK 527 524 526 545 C4' C C 26 OK 547 544 546 565 C4' C C 27 OK 567 564 566 585 C4' C C 28 OK 587 584 586 605 C4' A C 29 OK 607 604 606 627 C4' C C 30 OK 629 626 628 647 C4' C C 31 OK 649 646 648 667 C4' U C 32 OK 669 666 668 687 C4' G C 33 OK 689 686 688 710 C4' A C 34 OK 712 709 711 732 C4' C C 35 OK 734 731 733 752 C4' C C 36 OK 754 751 753 774 C4' C C 37 OK 776 773 775 794 C4' C C 38 OK 796 793 795 814 C4' A C 39 OK 816 813 815 836 C4' U C 40 distorted 838 835 837 856 C4' G C 41 OK 858 855 857 879 C4' C C 42 OK 881 878 880 899 C4' C C 43 OK 901 898 900 919 C4' G C 44 OK 921 918 920 942 C4' A C 45 OK 944 941 943 964 C4' A C 46 OK 966 963 965 986 C4' C C 47 distorted 988 985 987 1006 C4' U C 48 OK 1008 1005 1007 1026 C4' C C 49 OK 1028 1025 1027 1046 C4' A C 50 OK 1048 1045 1047 1068 C4' G C 51 OK 1070 1067 1069 1091 C4' A C 52 OK 1093 1090 1092 1113 C4' A C 53 OK 1115 1112 1114 1135 C4' G C 54 OK 1137 1134 1136 1158 C4' U C 55 OK 1160 1157 1159 1178 C4' G C 56 OK 1180 1177 1179 1201 C4' A C 57 distorted 1203 1200 1202 1223 C4' A C 58 OK 1225 1222 1224 1245 C4' A C 59 OK 1247 1244 1246 1267 C4' C C 60 OK 1269 1266 1268 1287 C4' G C 61 OK 1289 1286 1288 1310 C4' C C 62 OK 1312 1309 1311 1330 C4' C C 63 OK 1332 1329 1331 1350 C4' G C 64 OK 1352 1349 1351 1375 C4' U C 65 OK 1377 1374 1376 1395 C4' A C 66 OK 1397 1394 1396 1417 C4' G C 67 OK 1419 1416 1418 1440 C4' C C 68 OK 1442 1439 1441 1460 C4' G C 69 OK 1462 1459 1461 1483 C4' C C 70 OK 1485 1482 1484 1503 C4' C C 71 OK 1505 1502 1504 1523 C4' G C 72 OK 1525 1522 1524 1546 C4' A C 73 OK 1548 1545 1547 1568 C4' U C 74 OK 1570 1567 1569 1588 C4' G C 75 OK 1590 1587 1589 1611 C4' G C 76 OK 1613 1610 1612 1634 C4' U C 77 OK 1636 1633 1635 1654 C4' A C 78 OK 1656 1653 1655 1676 C4' G C 79 OK 1678 1675 1677 1699 C4' U C 80 OK 1701 1698 1700 1719 C4' G C 81 OK 1721 1718 1720 1742 C4' U C 82 OK 1744 1741 1743 1762 C4' G C 83 OK 1764 1761 1763 1785 C4' G C 84 OK 1787 1784 1786 1808 C4' G C 85 OK 1810 1807 1809 1831 C4' G C 86 OK 1833 1830 1832 1854 C4' U C 87 OK 1856 1853 1855 1874 C4' C C 88 OK 1876 1873 1875 1894 C4' U C 89 OK 1896 1893 1895 1914 C4' C C 90 OK 1916 1913 1915 1934 C4' C C 91 OK 1936 1933 1935 1954 C4' C C 92 OK 1956 1953 1955 1974 C4' C C 93 OK 1976 1973 1975 1994 C4' A C 94 OK 1996 1993 1995 2016 C4' U C 95 OK 2018 2015 2017 2036 C4' G C 96 OK 2038 2035 2037 2059 C4' C C 97 OK 2061 2058 2060 2079 C4' G C 98 OK 2081 2078 2080 2102 C4' A C 99 OK 2104 2101 2103 2124 C4' G C 100 OK 2126 2123 2125 2147 C4' A C 101 OK 2149 2146 2148 2169 C4' G C 102 OK 2171 2168 2170 2192 C4' U C 103 OK 2194 2191 2193 2212 C4' A C 104 OK 2214 2211 2213 2234 C4' G C 105 OK 2236 2233 2235 2257 C4' G C 106 OK 2259 2256 2258 2280 C4' G C 107 OK 2282 2279 2281 2303 C4' A C 108 OK 2305 2302 2304 2325 C4' A C 109 OK 2327 2324 2326 2347 C4' C C 110 OK 2349 2346 2348 2367 C4' U C 111 OK 2369 2366 2368 2387 C4' G C 112 OK 2389 2386 2388 2410 C4' C C 113 OK 2412 2409 2411 2430 C4' C C 114 OK 2432 2429 2431 2450 C4' A C 115 OK 2452 2449 2451 2472 C4' G C 116 OK 2474 2471 2473 2495 C4' G C 117 OK 2497 2494 2496 2518 C4' C C 118 OK 2520 2517 2519 2538 C4' A C 119 OK 2540 2537 2539 2562 C4' U C 120 OK 2564 2561 2563 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' U C 1 5 7 26 C5' G C 2 25 27 49 C5' C C 3 48 50 69 C5' C C 4 68 70 89 C5' U C 5 88 90 109 C5' G C 6 108 110 132 C5' G C 7 131 133 155 C5' C C 8 154 156 175 C5' G C 9 174 176 198 C5' G C 10 197 199 221 C5' C C 11 220 222 241 C5' C C 12 240 242 261 C5' G C 13 260 262 284 C5' U C 14 283 285 304 C5' A C 15 303 305 326 C5' G C 16 325 327 349 C5' C C 17 348 350 369 C5' G C 18 368 370 392 C5' C C 19 391 393 412 C5' G C 20 411 413 435 C5' G C 21 434 436 458 C5' U C 22 457 459 478 C5' G C 23 477 479 501 C5' G C 24 500 502 524 C5' U C 25 523 525 544 C5' C C 26 543 545 564 C5' C C 27 563 565 584 C5' C C 28 583 585 604 C5' A C 29 603 605 626 C5' C C 30 625 627 646 C5' C C 31 645 647 666 C5' U C 32 665 667 686 C5' G C 33 685 687 709 C5' A C 34 708 710 731 C5' C C 35 730 732 751 C5' C C 36 750 752 773 C5' C C 37 772 774 793 C5' C C 38 792 794 813 C5' A C 39 812 814 835 C5' U C 40 834 836 855 C5' G C 41 854 856 878 C5' C C 42 877 879 898 C5' C C 43 897 899 918 C5' G C 44 917 919 941 C5' A C 45 940 942 963 C5' A C 46 962 964 985 C5' C C 47 984 986 1005 C5' U C 48 1004 1006 1025 C5' C C 49 1024 1026 1045 C5' A C 50 1044 1046 1067 C5' G C 51 1066 1068 1090 C5' A C 52 1089 1091 1112 C5' A C 53 1111 1113 1134 C5' G C 54 1133 1135 1157 C5' U C 55 1156 1158 1177 C5' G C 56 1176 1178 1200 C5' A C 57 1199 1201 1222 C5' A C 58 1221 1223 1244 C5' A C 59 1243 1245 1266 C5' C C 60 1265 1267 1286 C5' G C 61 1285 1287 1309 C5' C C 62 1308 1310 1329 C5' C C 63 1328 1330 1349 C5' G C 64 1348 1350 1374 C5' U C 65 1373 1375 1394 C5' A C 66 1393 1395 1416 C5' G C 67 1415 1417 1439 C5' C C 68 1438 1440 1459 C5' G C 69 1458 1460 1482 C5' C C 70 1481 1483 1502 C5' C C 71 1501 1503 1522 C5' G C 72 1521 1523 1545 C5' A C 73 1544 1546 1567 C5' U C 74 1566 1568 1587 C5' G C 75 1586 1588 1610 C5' G C 76 1609 1611 1633 C5' U C 77 1632 1634 1653 C5' A C 78 1652 1654 1675 C5' G C 79 1674 1676 1698 C5' U C 80 1697 1699 1718 C5' G C 81 1717 1719 1741 C5' U C 82 1740 1742 1761 C5' G C 83 1760 1762 1784 C5' G C 84 1783 1785 1807 C5' G C 85 1806 1808 1830 C5' G C 86 1829 1831 1853 C5' U C 87 1852 1854 1873 C5' C C 88 1872 1874 1893 C5' U C 89 1892 1894 1913 C5' C C 90 1912 1914 1933 C5' C C 91 1932 1934 1953 C5' C C 92 1952 1954 1973 C5' C C 93 1972 1974 1993 C5' A C 94 1992 1994 2015 C5' U C 95 2014 2016 2035 C5' G C 96 2034 2036 2058 C5' C C 97 2057 2059 2078 C5' G C 98 2077 2079 2101 C5' A C 99 2100 2102 2123 C5' G C 100 2122 2124 2146 C5' A C 101 2145 2147 2168 C5' G C 102 2167 2169 2191 C5' U C 103 2190 2192 2211 C5' A C 104 2210 2212 2233 C5' G C 105 2232 2234 2256 C5' G C 106 2255 2257 2279 C5' G C 107 2278 2280 2302 C5' A C 108 2301 2303 2324 C5' A C 109 2323 2325 2346 C5' C C 110 2345 2347 2366 C5' U C 111 2365 2367 2386 C5' G C 112 2385 2387 2409 C5' C C 113 2408 2410 2429 C5' C C 114 2428 2430 2449 C5' A C 115 2448 2450 2471 C5' G C 116 2470 2472 2494 C5' G C 117 2493 2495 2517 C5' C C 118 2516 2518 2537 C5' A C 119 2536 2538 2561 C5' U C 120 2560 2562 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P U C 1 OK OK 3 4 5 22 P G C 2 distorted distorted 10 23 24 25 45 P C C 3 distorted distorted 30 46 47 48 65 P C C 4 distorted distorted 53 66 67 68 85 P U C 5 distorted distorted 73 86 87 88 105 P G C 6 distorted distorted 93 106 107 108 128 P G C 7 distorted distorted 113 129 130 131 151 P C C 8 distorted distorted 136 152 153 154 171 P G C 9 distorted distorted 159 172 173 174 194 P G C 10 distorted distorted 179 195 196 197 217 P C C 11 distorted distorted 202 218 219 220 237 P C C 12 distorted distorted 225 238 239 240 257 P G C 13 distorted distorted 245 258 259 260 280 P U C 14 distorted distorted 265 281 282 283 300 P A C 15 distorted distorted 288 301 302 303 322 P G C 16 distorted distorted 308 323 324 325 345 P C C 17 distorted distorted 330 346 347 348 365 P G C 18 distorted distorted 353 366 367 368 388 P C C 19 distorted distorted 373 389 390 391 408 P G C 20 distorted distorted 396 409 410 411 431 P G C 21 distorted distorted 416 432 433 434 454 P U C 22 distorted distorted 439 455 456 457 474 P G C 23 distorted distorted 462 475 476 477 497 P G C 24 distorted distorted 482 498 499 500 520 P U C 25 distorted distorted 505 521 522 523 540 P C C 26 distorted distorted 528 541 542 543 560 P C C 27 distorted distorted 548 561 562 563 580 P C C 28 distorted distorted 568 581 582 583 600 P A C 29 distorted distorted 588 601 602 603 622 P C C 30 distorted distorted 608 623 624 625 642 P C C 31 distorted distorted 630 643 644 645 662 P U C 32 distorted distorted 650 663 664 665 682 P G C 33 distorted distorted 670 683 684 685 705 P A C 34 distorted distorted 690 706 707 708 727 P C C 35 distorted distorted 713 728 729 730 747 P C C 36 distorted distorted 735 748 749 750 769 P C C 37 distorted distorted 755 770 771 772 789 P C C 38 distorted distorted 777 790 791 792 809 P A C 39 distorted distorted 797 810 811 812 831 P U C 40 distorted distorted 817 832 833 834 851 P G C 41 distorted distorted 839 852 853 854 874 P C C 42 distorted distorted 859 875 876 877 894 P C C 43 distorted distorted 882 895 896 897 914 P G C 44 distorted distorted 902 915 916 917 937 P A C 45 distorted distorted 922 938 939 940 959 P A C 46 distorted distorted 945 960 961 962 981 P C C 47 distorted distorted 967 982 983 984 1001 P U C 48 distorted distorted 989 1002 1003 1004 1021 P C C 49 distorted distorted 1009 1022 1023 1024 1041 P A C 50 distorted distorted 1029 1042 1043 1044 1063 P G C 51 distorted distorted 1049 1064 1065 1066 1086 P A C 52 distorted distorted 1071 1087 1088 1089 1108 P A C 53 distorted distorted 1094 1109 1110 1111 1130 P G C 54 distorted distorted 1116 1131 1132 1133 1153 P U C 55 distorted distorted 1138 1154 1155 1156 1173 P G C 56 distorted distorted 1161 1174 1175 1176 1196 P A C 57 distorted distorted 1181 1197 1198 1199 1218 P A C 58 distorted distorted 1204 1219 1220 1221 1240 P A C 59 distorted distorted 1226 1241 1242 1243 1262 P C C 60 distorted distorted 1248 1263 1264 1265 1282 P G C 61 distorted distorted 1270 1283 1284 1285 1305 P C C 62 distorted distorted 1290 1306 1307 1308 1325 P C C 63 distorted distorted 1313 1326 1327 1328 1345 P G C 64 distorted distorted 1333 1346 1347 1348 1370 P U C 65 distorted distorted 1353 1371 1372 1373 1390 P A C 66 distorted distorted 1378 1391 1392 1393 1412 P G C 67 distorted distorted 1398 1413 1414 1415 1435 P C C 68 distorted distorted 1420 1436 1437 1438 1455 P G C 69 distorted distorted 1443 1456 1457 1458 1478 P C C 70 distorted distorted 1463 1479 1480 1481 1498 P C C 71 distorted distorted 1486 1499 1500 1501 1518 P G C 72 distorted distorted 1506 1519 1520 1521 1541 P A C 73 distorted distorted 1526 1542 1543 1544 1563 P U C 74 distorted distorted 1549 1564 1565 1566 1583 P G C 75 distorted distorted 1571 1584 1585 1586 1606 P G C 76 distorted distorted 1591 1607 1608 1609 1629 P U C 77 distorted distorted 1614 1630 1631 1632 1649 P A C 78 distorted distorted 1637 1650 1651 1652 1671 P G C 79 distorted distorted 1657 1672 1673 1674 1694 P U C 80 distorted distorted 1679 1695 1696 1697 1714 P G C 81 distorted distorted 1702 1715 1716 1717 1737 P U C 82 distorted distorted 1722 1738 1739 1740 1757 P G C 83 distorted distorted 1745 1758 1759 1760 1780 P G C 84 distorted distorted 1765 1781 1782 1783 1803 P G C 85 distorted distorted 1788 1804 1805 1806 1826 P G C 86 distorted distorted 1811 1827 1828 1829 1849 P U C 87 distorted distorted 1834 1850 1851 1852 1869 P C C 88 distorted distorted 1857 1870 1871 1872 1889 P U C 89 distorted distorted 1877 1890 1891 1892 1909 P C C 90 distorted distorted 1897 1910 1911 1912 1929 P C C 91 distorted distorted 1917 1930 1931 1932 1949 P C C 92 distorted distorted 1937 1950 1951 1952 1969 P C C 93 distorted distorted 1957 1970 1971 1972 1989 P A C 94 distorted distorted 1977 1990 1991 1992 2011 P U C 95 distorted distorted 1997 2012 2013 2014 2031 P G C 96 distorted distorted 2019 2032 2033 2034 2054 P C C 97 distorted distorted 2039 2055 2056 2057 2074 P G C 98 distorted distorted 2062 2075 2076 2077 2097 P A C 99 distorted distorted 2082 2098 2099 2100 2119 P G C 100 distorted distorted 2105 2120 2121 2122 2142 P A C 101 distorted distorted 2127 2143 2144 2145 2164 P G C 102 distorted distorted 2150 2165 2166 2167 2187 P U C 103 distorted distorted 2172 2188 2189 2190 2207 P A C 104 distorted distorted 2195 2208 2209 2210 2229 P G C 105 distorted distorted 2215 2230 2231 2232 2252 P G C 106 distorted distorted 2237 2253 2254 2255 2275 P G C 107 distorted distorted 2260 2276 2277 2278 2298 P A C 108 distorted distorted 2283 2299 2300 2301 2320 P A C 109 distorted distorted 2306 2321 2322 2323 2342 P C C 110 distorted distorted 2328 2343 2344 2345 2362 P U C 111 distorted distorted 2350 2363 2364 2365 2382 P G C 112 distorted distorted 2370 2383 2384 2385 2405 P C C 113 distorted distorted 2390 2406 2407 2408 2425 P C C 114 distorted distorted 2413 2426 2427 2428 2445 P A C 115 distorted distorted 2433 2446 2447 2448 2467 P G C 116 distorted distorted 2453 2468 2469 2470 2490 P G C 117 distorted distorted 2475 2491 2492 2493 2513 P C C 118 distorted distorted 2498 2514 2515 2516 2533 P A C 119 distorted distorted 2521 2534 2535 2536 2557 P U C 120 distorted distorted 2541 2558 2559 2560 ---------------------------------------------------------------------------------