ID code: '3IVN' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 5 beta 4 10 7 32 C1' G A 6 beta 27 33 30 55 C1' C A 7 beta 50 56 53 75 C1' C A 8 beta 70 76 73 95 C1' A A 9 beta 90 96 93 117 C1' G A 10 beta 112 118 115 140 C1' U A 11 beta 135 141 138 160 C1' A A 12 beta 155 161 158 182 C1' U A 13 beta 177 183 180 202 C1' A A 14 beta 197 203 200 224 C1' A A 15 beta 219 225 222 246 C1' C A 16 beta 241 247 244 266 C1' C A 17 beta 261 267 264 286 C1' U A 18 beta 281 287 284 306 C1' C A 19 beta 301 307 304 326 C1' A A 20 beta 321 327 324 348 C1' A A 21 beta 343 349 346 370 C1' U A 22 beta 365 371 368 390 C1' G A 23 beta 385 391 388 413 C1' A A 24 beta 408 414 411 435 C1' U A 25 beta 430 436 433 455 C1' A A 26 beta 450 456 453 477 C1' U A 27 beta 472 478 475 497 C1' G A 28 beta 492 498 495 520 C1' G A 29 beta 515 521 518 543 C1' U A 30 beta 538 544 541 563 C1' U A 31 beta 558 564 561 583 C1' U A 32 beta 578 584 581 603 C1' G A 33 beta 598 604 601 626 C1' A A 34 beta 621 627 624 648 C1' G A 35 beta 643 649 646 671 C1' G A 36 beta 666 672 669 694 C1' G A 37 beta 689 695 692 717 C1' U A 38 beta 712 718 715 737 C1' G A 39 beta 732 738 735 760 C1' U A 40 beta 755 761 758 780 C1' C A 41 beta 775 781 778 800 C1' U A 42 beta 795 801 798 820 C1' A A 43 beta 815 821 818 842 C1' C A 44 beta 837 843 840 862 C1' C A 45 beta 857 863 860 882 C1' A A 46 beta 877 883 880 904 C1' G A 47 beta 899 905 902 927 C1' G A 48 beta 922 928 925 950 C1' A A 49 beta 945 951 948 972 C1' A A 50 beta 967 973 970 994 C1' C A 51 beta 989 995 992 1014 C1' C A 52 beta 1009 1015 1012 1034 C1' G A 53 beta 1029 1035 1032 1057 C1' U A 54 beta 1052 1058 1055 1077 C1' A A 55 beta 1072 1078 1075 1099 C1' A A 56 beta 1094 1100 1097 1121 C1' A A 57 beta 1116 1122 1119 1143 C1' A A 58 beta 1138 1144 1141 1165 C1' U A 59 beta 1160 1166 1163 1185 C1' C A 60 beta 1180 1186 1183 1205 C1' C A 61 beta 1200 1206 1203 1225 C1' U A 62 beta 1220 1226 1223 1245 C1' G A 63 beta 1240 1246 1243 1268 C1' A A 64 beta 1263 1269 1266 1290 C1' C A 65 beta 1285 1291 1288 1310 C1' U A 66 beta 1305 1311 1308 1330 C1' A A 67 beta 1325 1331 1328 1352 C1' C A 68 beta 1347 1353 1350 1372 C1' U A 69 beta 1367 1373 1370 1392 C1' G A 70 beta 1387 1393 1390 1415 C1' G A 71 beta 1410 1416 1413 1438 C1' U A 72 beta 1433 1439 1436 1458 C1' C A 73 beta 1453 1459 1456 1476 C1' G B 5 beta 1471 1477 1474 1499 C1' G B 6 beta 1494 1500 1497 1522 C1' C B 7 beta 1517 1523 1520 1542 C1' C B 8 beta 1537 1543 1540 1562 C1' A B 9 beta 1557 1563 1560 1584 C1' G B 10 beta 1579 1585 1582 1607 C1' U B 11 beta 1602 1608 1605 1627 C1' A B 12 beta 1622 1628 1625 1649 C1' U B 13 beta 1644 1650 1647 1669 C1' A B 14 beta 1664 1670 1667 1691 C1' A B 15 beta 1686 1692 1689 1713 C1' C B 16 beta 1708 1714 1711 1733 C1' C B 17 beta 1728 1734 1731 1753 C1' U B 18 beta 1748 1754 1751 1773 C1' C B 19 beta 1768 1774 1771 1793 C1' A B 20 beta 1788 1794 1791 1815 C1' A B 21 beta 1810 1816 1813 1837 C1' U B 22 beta 1832 1838 1835 1857 C1' G B 23 beta 1852 1858 1855 1880 C1' A B 24 beta 1875 1881 1878 1902 C1' U B 25 beta 1897 1903 1900 1922 C1' A B 26 beta 1917 1923 1920 1944 C1' U B 27 beta 1939 1945 1942 1964 C1' G B 28 beta 1959 1965 1962 1987 C1' G B 29 beta 1982 1988 1985 2010 C1' U B 30 beta 2005 2011 2008 2030 C1' U B 31 beta 2025 2031 2028 2050 C1' U B 32 beta 2045 2051 2048 2070 C1' G B 33 beta 2065 2071 2068 2093 C1' A B 34 beta 2088 2094 2091 2115 C1' G B 35 beta 2110 2116 2113 2138 C1' G B 36 beta 2133 2139 2136 2161 C1' G B 37 beta 2156 2162 2159 2184 C1' U B 38 beta 2179 2185 2182 2204 C1' G B 39 beta 2199 2205 2202 2227 C1' U B 40 beta 2222 2228 2225 2247 C1' C B 41 beta 2242 2248 2245 2267 C1' U B 42 beta 2262 2268 2265 2287 C1' A B 43 beta 2282 2288 2285 2309 C1' C B 44 beta 2304 2310 2307 2329 C1' C B 45 beta 2324 2330 2327 2349 C1' A B 46 beta 2344 2350 2347 2371 C1' G B 47 beta 2366 2372 2369 2394 C1' G B 48 beta 2389 2395 2392 2417 C1' A B 49 beta 2412 2418 2415 2439 C1' A B 50 beta 2434 2440 2437 2461 C1' C B 51 beta 2456 2462 2459 2481 C1' C B 52 beta 2476 2482 2479 2501 C1' G B 53 beta 2496 2502 2499 2524 C1' U B 54 beta 2519 2525 2522 2544 C1' A B 55 beta 2539 2545 2542 2566 C1' A B 56 beta 2561 2567 2564 2588 C1' A B 57 beta 2583 2589 2586 2610 C1' A B 58 beta 2605 2611 2608 2632 C1' U B 59 beta 2627 2633 2630 2652 C1' C B 60 beta 2647 2653 2650 2672 C1' C B 61 beta 2667 2673 2670 2692 C1' U B 62 beta 2687 2693 2690 2712 C1' G B 63 beta 2707 2713 2710 2735 C1' A B 64 beta 2730 2736 2733 2757 C1' C B 65 beta 2752 2758 2755 2777 C1' U B 66 beta 2772 2778 2775 2797 C1' A B 67 beta 2792 2798 2795 2819 C1' C B 68 beta 2814 2820 2817 2839 C1' U B 69 beta 2834 2840 2837 2859 C1' G B 70 beta 2854 2860 2857 2882 C1' G B 71 beta 2877 2883 2880 2905 C1' U B 72 beta 2900 2906 2903 2925 C1' C B 73 beta 2920 2926 2923 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 5 OK 9 5 8 30 C2' G A 6 OK 32 28 31 53 C2' C A 7 OK 55 51 54 73 C2' C A 8 OK 75 71 74 93 C2' A A 9 OK 95 91 94 115 C2' G A 10 OK 117 113 116 138 C2' U A 11 OK 140 136 139 158 C2' A A 12 OK 160 156 159 180 C2' U A 13 OK 182 178 181 200 C2' A A 14 OK 202 198 201 222 C2' A A 15 OK 224 220 223 244 C2' C A 16 OK 246 242 245 264 C2' C A 17 OK 266 262 265 284 C2' U A 18 OK 286 282 285 304 C2' C A 19 OK 306 302 305 324 C2' A A 20 OK 326 322 325 346 C2' A A 21 OK 348 344 347 368 C2' U A 22 OK 370 366 369 388 C2' G A 23 OK 390 386 389 411 C2' A A 24 OK 413 409 412 433 C2' U A 25 OK 435 431 434 453 C2' A A 26 OK 455 451 454 475 C2' U A 27 OK 477 473 476 495 C2' G A 28 OK 497 493 496 518 C2' G A 29 OK 520 516 519 541 C2' U A 30 OK 543 539 542 561 C2' U A 31 OK 563 559 562 581 C2' U A 32 OK 583 579 582 601 C2' G A 33 OK 603 599 602 624 C2' A A 34 OK 626 622 625 646 C2' G A 35 OK 648 644 647 669 C2' G A 36 OK 671 667 670 692 C2' G A 37 OK 694 690 693 715 C2' U A 38 OK 717 713 716 735 C2' G A 39 OK 737 733 736 758 C2' U A 40 OK 760 756 759 778 C2' C A 41 OK 780 776 779 798 C2' U A 42 OK 800 796 799 818 C2' A A 43 OK 820 816 819 840 C2' C A 44 OK 842 838 841 860 C2' C A 45 OK 862 858 861 880 C2' A A 46 OK 882 878 881 902 C2' G A 47 OK 904 900 903 925 C2' G A 48 OK 927 923 926 948 C2' A A 49 OK 950 946 949 970 C2' A A 50 OK 972 968 971 992 C2' C A 51 OK 994 990 993 1012 C2' C A 52 OK 1014 1010 1013 1032 C2' G A 53 OK 1034 1030 1033 1055 C2' U A 54 OK 1057 1053 1056 1075 C2' A A 55 OK 1077 1073 1076 1097 C2' A A 56 OK 1099 1095 1098 1119 C2' A A 57 OK 1121 1117 1120 1141 C2' A A 58 OK 1143 1139 1142 1163 C2' U A 59 OK 1165 1161 1164 1183 C2' C A 60 OK 1185 1181 1184 1203 C2' C A 61 OK 1205 1201 1204 1223 C2' U A 62 OK 1225 1221 1224 1243 C2' G A 63 OK 1245 1241 1244 1266 C2' A A 64 OK 1268 1264 1267 1288 C2' C A 65 OK 1290 1286 1289 1308 C2' U A 66 OK 1310 1306 1309 1328 C2' A A 67 OK 1330 1326 1329 1350 C2' C A 68 OK 1352 1348 1351 1370 C2' U A 69 OK 1372 1368 1371 1390 C2' G A 70 OK 1392 1388 1391 1413 C2' G A 71 OK 1415 1411 1414 1436 C2' U A 72 OK 1438 1434 1437 1456 C2' C A 73 OK 1458 1454 1457 1474 C2' G B 5 OK 1476 1472 1475 1497 C2' G B 6 OK 1499 1495 1498 1520 C2' C B 7 OK 1522 1518 1521 1540 C2' C B 8 OK 1542 1538 1541 1560 C2' A B 9 OK 1562 1558 1561 1582 C2' G B 10 OK 1584 1580 1583 1605 C2' U B 11 OK 1607 1603 1606 1625 C2' A B 12 OK 1627 1623 1626 1647 C2' U B 13 OK 1649 1645 1648 1667 C2' A B 14 OK 1669 1665 1668 1689 C2' A B 15 OK 1691 1687 1690 1711 C2' C B 16 OK 1713 1709 1712 1731 C2' C B 17 OK 1733 1729 1732 1751 C2' U B 18 OK 1753 1749 1752 1771 C2' C B 19 OK 1773 1769 1772 1791 C2' A B 20 OK 1793 1789 1792 1813 C2' A B 21 OK 1815 1811 1814 1835 C2' U B 22 OK 1837 1833 1836 1855 C2' G B 23 OK 1857 1853 1856 1878 C2' A B 24 OK 1880 1876 1879 1900 C2' U B 25 OK 1902 1898 1901 1920 C2' A B 26 OK 1922 1918 1921 1942 C2' U B 27 OK 1944 1940 1943 1962 C2' G B 28 OK 1964 1960 1963 1985 C2' G B 29 OK 1987 1983 1986 2008 C2' U B 30 OK 2010 2006 2009 2028 C2' U B 31 OK 2030 2026 2029 2048 C2' U B 32 OK 2050 2046 2049 2068 C2' G B 33 OK 2070 2066 2069 2091 C2' A B 34 OK 2093 2089 2092 2113 C2' G B 35 OK 2115 2111 2114 2136 C2' G B 36 OK 2138 2134 2137 2159 C2' G B 37 OK 2161 2157 2160 2182 C2' U B 38 OK 2184 2180 2183 2202 C2' G B 39 OK 2204 2200 2203 2225 C2' U B 40 OK 2227 2223 2226 2245 C2' C B 41 OK 2247 2243 2246 2265 C2' U B 42 OK 2267 2263 2266 2285 C2' A B 43 OK 2287 2283 2286 2307 C2' C B 44 OK 2309 2305 2308 2327 C2' C B 45 OK 2329 2325 2328 2347 C2' A B 46 OK 2349 2345 2348 2369 C2' G B 47 OK 2371 2367 2370 2392 C2' G B 48 OK 2394 2390 2393 2415 C2' A B 49 OK 2417 2413 2416 2437 C2' A B 50 OK 2439 2435 2438 2459 C2' C B 51 OK 2461 2457 2460 2479 C2' C B 52 OK 2481 2477 2480 2499 C2' G B 53 OK 2501 2497 2500 2522 C2' U B 54 OK 2524 2520 2523 2542 C2' A B 55 OK 2544 2540 2543 2564 C2' A B 56 OK 2566 2562 2565 2586 C2' A B 57 OK 2588 2584 2587 2608 C2' A B 58 OK 2610 2606 2609 2630 C2' U B 59 OK 2632 2628 2631 2650 C2' C B 60 OK 2652 2648 2651 2670 C2' C B 61 OK 2672 2668 2671 2690 C2' U B 62 OK 2692 2688 2691 2710 C2' G B 63 OK 2712 2708 2711 2733 C2' A B 64 OK 2735 2731 2734 2755 C2' C B 65 OK 2757 2753 2756 2775 C2' U B 66 OK 2777 2773 2776 2795 C2' A B 67 OK 2797 2793 2796 2817 C2' C B 68 OK 2819 2815 2818 2837 C2' U B 69 OK 2839 2835 2838 2857 C2' G B 70 OK 2859 2855 2858 2880 C2' G B 71 OK 2882 2878 2881 2903 C2' U B 72 OK 2905 2901 2904 2923 C2' C B 73 OK 2925 2921 2924 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 5 OK 3 6 7 28 C3' G A 6 OK 26 29 30 51 C3' C A 7 OK 49 52 53 71 C3' C A 8 OK 69 72 73 91 C3' A A 9 OK 89 92 93 113 C3' G A 10 OK 111 114 115 136 C3' U A 11 OK 134 137 138 156 C3' A A 12 OK 154 157 158 178 C3' U A 13 OK 176 179 180 198 C3' A A 14 OK 196 199 200 220 C3' A A 15 OK 218 221 222 242 C3' C A 16 OK 240 243 244 262 C3' C A 17 OK 260 263 264 282 C3' U A 18 OK 280 283 284 302 C3' C A 19 OK 300 303 304 322 C3' A A 20 OK 320 323 324 344 C3' A A 21 OK 342 345 346 366 C3' U A 22 OK 364 367 368 386 C3' G A 23 OK 384 387 388 409 C3' A A 24 OK 407 410 411 431 C3' U A 25 OK 429 432 433 451 C3' A A 26 OK 449 452 453 473 C3' U A 27 OK 471 474 475 493 C3' G A 28 OK 491 494 495 516 C3' G A 29 OK 514 517 518 539 C3' U A 30 OK 537 540 541 559 C3' U A 31 OK 557 560 561 579 C3' U A 32 OK 577 580 581 599 C3' G A 33 OK 597 600 601 622 C3' A A 34 OK 620 623 624 644 C3' G A 35 OK 642 645 646 667 C3' G A 36 OK 665 668 669 690 C3' G A 37 OK 688 691 692 713 C3' U A 38 OK 711 714 715 733 C3' G A 39 OK 731 734 735 756 C3' U A 40 OK 754 757 758 776 C3' C A 41 OK 774 777 778 796 C3' U A 42 OK 794 797 798 816 C3' A A 43 OK 814 817 818 838 C3' C A 44 OK 836 839 840 858 C3' C A 45 OK 856 859 860 878 C3' A A 46 OK 876 879 880 900 C3' G A 47 OK 898 901 902 923 C3' G A 48 OK 921 924 925 946 C3' A A 49 OK 944 947 948 968 C3' A A 50 OK 966 969 970 990 C3' C A 51 OK 988 991 992 1010 C3' C A 52 OK 1008 1011 1012 1030 C3' G A 53 OK 1028 1031 1032 1053 C3' U A 54 OK 1051 1054 1055 1073 C3' A A 55 OK 1071 1074 1075 1095 C3' A A 56 OK 1093 1096 1097 1117 C3' A A 57 OK 1115 1118 1119 1139 C3' A A 58 OK 1137 1140 1141 1161 C3' U A 59 OK 1159 1162 1163 1181 C3' C A 60 OK 1179 1182 1183 1201 C3' C A 61 OK 1199 1202 1203 1221 C3' U A 62 OK 1219 1222 1223 1241 C3' G A 63 OK 1239 1242 1243 1264 C3' A A 64 OK 1262 1265 1266 1286 C3' C A 65 OK 1284 1287 1288 1306 C3' U A 66 OK 1304 1307 1308 1326 C3' A A 67 OK 1324 1327 1328 1348 C3' C A 68 OK 1346 1349 1350 1368 C3' U A 69 OK 1366 1369 1370 1388 C3' G A 70 OK 1386 1389 1390 1411 C3' G A 71 OK 1409 1412 1413 1434 C3' U A 72 OK 1432 1435 1436 1454 C3' C A 73 OK 1452 1455 1456 1472 C3' G B 5 OK 1470 1473 1474 1495 C3' G B 6 OK 1493 1496 1497 1518 C3' C B 7 OK 1516 1519 1520 1538 C3' C B 8 OK 1536 1539 1540 1558 C3' A B 9 OK 1556 1559 1560 1580 C3' G B 10 OK 1578 1581 1582 1603 C3' U B 11 OK 1601 1604 1605 1623 C3' A B 12 OK 1621 1624 1625 1645 C3' U B 13 OK 1643 1646 1647 1665 C3' A B 14 OK 1663 1666 1667 1687 C3' A B 15 OK 1685 1688 1689 1709 C3' C B 16 OK 1707 1710 1711 1729 C3' C B 17 OK 1727 1730 1731 1749 C3' U B 18 OK 1747 1750 1751 1769 C3' C B 19 OK 1767 1770 1771 1789 C3' A B 20 OK 1787 1790 1791 1811 C3' A B 21 OK 1809 1812 1813 1833 C3' U B 22 OK 1831 1834 1835 1853 C3' G B 23 OK 1851 1854 1855 1876 C3' A B 24 OK 1874 1877 1878 1898 C3' U B 25 OK 1896 1899 1900 1918 C3' A B 26 OK 1916 1919 1920 1940 C3' U B 27 OK 1938 1941 1942 1960 C3' G B 28 OK 1958 1961 1962 1983 C3' G B 29 OK 1981 1984 1985 2006 C3' U B 30 OK 2004 2007 2008 2026 C3' U B 31 OK 2024 2027 2028 2046 C3' U B 32 OK 2044 2047 2048 2066 C3' G B 33 OK 2064 2067 2068 2089 C3' A B 34 OK 2087 2090 2091 2111 C3' G B 35 OK 2109 2112 2113 2134 C3' G B 36 OK 2132 2135 2136 2157 C3' G B 37 OK 2155 2158 2159 2180 C3' U B 38 OK 2178 2181 2182 2200 C3' G B 39 OK 2198 2201 2202 2223 C3' U B 40 OK 2221 2224 2225 2243 C3' C B 41 OK 2241 2244 2245 2263 C3' U B 42 OK 2261 2264 2265 2283 C3' A B 43 OK 2281 2284 2285 2305 C3' C B 44 OK 2303 2306 2307 2325 C3' C B 45 OK 2323 2326 2327 2345 C3' A B 46 OK 2343 2346 2347 2367 C3' G B 47 OK 2365 2368 2369 2390 C3' G B 48 OK 2388 2391 2392 2413 C3' A B 49 OK 2411 2414 2415 2435 C3' A B 50 OK 2433 2436 2437 2457 C3' C B 51 OK 2455 2458 2459 2477 C3' C B 52 OK 2475 2478 2479 2497 C3' G B 53 OK 2495 2498 2499 2520 C3' U B 54 OK 2518 2521 2522 2540 C3' A B 55 OK 2538 2541 2542 2562 C3' A B 56 OK 2560 2563 2564 2584 C3' A B 57 OK 2582 2585 2586 2606 C3' A B 58 OK 2604 2607 2608 2628 C3' U B 59 OK 2626 2629 2630 2648 C3' C B 60 OK 2646 2649 2650 2668 C3' C B 61 OK 2666 2669 2670 2688 C3' U B 62 OK 2686 2689 2690 2708 C3' G B 63 OK 2706 2709 2710 2731 C3' A B 64 OK 2729 2732 2733 2753 C3' C B 65 OK 2751 2754 2755 2773 C3' U B 66 OK 2771 2774 2775 2793 C3' A B 67 OK 2791 2794 2795 2815 C3' C B 68 OK 2813 2816 2817 2835 C3' U B 69 OK 2833 2836 2837 2855 C3' G B 70 OK 2853 2856 2857 2878 C3' G B 71 OK 2876 2879 2880 2901 C3' U B 72 OK 2899 2902 2903 2921 C3' C B 73 OK 2919 2922 2923 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 5 OK 5 2 4 26 C4' G A 6 OK 28 25 27 49 C4' C A 7 OK 51 48 50 69 C4' C A 8 OK 71 68 70 89 C4' A A 9 OK 91 88 90 111 C4' G A 10 OK 113 110 112 134 C4' U A 11 OK 136 133 135 154 C4' A A 12 OK 156 153 155 176 C4' U A 13 OK 178 175 177 196 C4' A A 14 OK 198 195 197 218 C4' A A 15 OK 220 217 219 240 C4' C A 16 OK 242 239 241 260 C4' C A 17 OK 262 259 261 280 C4' U A 18 OK 282 279 281 300 C4' C A 19 OK 302 299 301 320 C4' A A 20 OK 322 319 321 342 C4' A A 21 OK 344 341 343 364 C4' U A 22 OK 366 363 365 384 C4' G A 23 OK 386 383 385 407 C4' A A 24 OK 409 406 408 429 C4' U A 25 OK 431 428 430 449 C4' A A 26 OK 451 448 450 471 C4' U A 27 OK 473 470 472 491 C4' G A 28 OK 493 490 492 514 C4' G A 29 OK 516 513 515 537 C4' U A 30 OK 539 536 538 557 C4' U A 31 OK 559 556 558 577 C4' U A 32 OK 579 576 578 597 C4' G A 33 OK 599 596 598 620 C4' A A 34 OK 622 619 621 642 C4' G A 35 OK 644 641 643 665 C4' G A 36 OK 667 664 666 688 C4' G A 37 OK 690 687 689 711 C4' U A 38 OK 713 710 712 731 C4' G A 39 OK 733 730 732 754 C4' U A 40 OK 756 753 755 774 C4' C A 41 OK 776 773 775 794 C4' U A 42 OK 796 793 795 814 C4' A A 43 OK 816 813 815 836 C4' C A 44 OK 838 835 837 856 C4' C A 45 OK 858 855 857 876 C4' A A 46 OK 878 875 877 898 C4' G A 47 OK 900 897 899 921 C4' G A 48 OK 923 920 922 944 C4' A A 49 OK 946 943 945 966 C4' A A 50 OK 968 965 967 988 C4' C A 51 OK 990 987 989 1008 C4' C A 52 OK 1010 1007 1009 1028 C4' G A 53 OK 1030 1027 1029 1051 C4' U A 54 OK 1053 1050 1052 1071 C4' A A 55 OK 1073 1070 1072 1093 C4' A A 56 OK 1095 1092 1094 1115 C4' A A 57 OK 1117 1114 1116 1137 C4' A A 58 OK 1139 1136 1138 1159 C4' U A 59 OK 1161 1158 1160 1179 C4' C A 60 OK 1181 1178 1180 1199 C4' C A 61 OK 1201 1198 1200 1219 C4' U A 62 OK 1221 1218 1220 1239 C4' G A 63 OK 1241 1238 1240 1262 C4' A A 64 OK 1264 1261 1263 1284 C4' C A 65 OK 1286 1283 1285 1304 C4' U A 66 OK 1306 1303 1305 1324 C4' A A 67 OK 1326 1323 1325 1346 C4' C A 68 OK 1348 1345 1347 1366 C4' U A 69 OK 1368 1365 1367 1386 C4' G A 70 OK 1388 1385 1387 1409 C4' G A 71 OK 1411 1408 1410 1432 C4' U A 72 OK 1434 1431 1433 1452 C4' C A 73 OK 1454 1451 1453 1470 C4' G B 5 OK 1472 1469 1471 1493 C4' G B 6 OK 1495 1492 1494 1516 C4' C B 7 OK 1518 1515 1517 1536 C4' C B 8 OK 1538 1535 1537 1556 C4' A B 9 OK 1558 1555 1557 1578 C4' G B 10 OK 1580 1577 1579 1601 C4' U B 11 OK 1603 1600 1602 1621 C4' A B 12 OK 1623 1620 1622 1643 C4' U B 13 OK 1645 1642 1644 1663 C4' A B 14 OK 1665 1662 1664 1685 C4' A B 15 OK 1687 1684 1686 1707 C4' C B 16 OK 1709 1706 1708 1727 C4' C B 17 OK 1729 1726 1728 1747 C4' U B 18 OK 1749 1746 1748 1767 C4' C B 19 OK 1769 1766 1768 1787 C4' A B 20 OK 1789 1786 1788 1809 C4' A B 21 OK 1811 1808 1810 1831 C4' U B 22 OK 1833 1830 1832 1851 C4' G B 23 OK 1853 1850 1852 1874 C4' A B 24 OK 1876 1873 1875 1896 C4' U B 25 OK 1898 1895 1897 1916 C4' A B 26 OK 1918 1915 1917 1938 C4' U B 27 OK 1940 1937 1939 1958 C4' G B 28 OK 1960 1957 1959 1981 C4' G B 29 OK 1983 1980 1982 2004 C4' U B 30 OK 2006 2003 2005 2024 C4' U B 31 OK 2026 2023 2025 2044 C4' U B 32 OK 2046 2043 2045 2064 C4' G B 33 OK 2066 2063 2065 2087 C4' A B 34 OK 2089 2086 2088 2109 C4' G B 35 OK 2111 2108 2110 2132 C4' G B 36 OK 2134 2131 2133 2155 C4' G B 37 OK 2157 2154 2156 2178 C4' U B 38 OK 2180 2177 2179 2198 C4' G B 39 OK 2200 2197 2199 2221 C4' U B 40 OK 2223 2220 2222 2241 C4' C B 41 OK 2243 2240 2242 2261 C4' U B 42 OK 2263 2260 2262 2281 C4' A B 43 OK 2283 2280 2282 2303 C4' C B 44 OK 2305 2302 2304 2323 C4' C B 45 OK 2325 2322 2324 2343 C4' A B 46 OK 2345 2342 2344 2365 C4' G B 47 OK 2367 2364 2366 2388 C4' G B 48 OK 2390 2387 2389 2411 C4' A B 49 OK 2413 2410 2412 2433 C4' A B 50 OK 2435 2432 2434 2455 C4' C B 51 OK 2457 2454 2456 2475 C4' C B 52 OK 2477 2474 2476 2495 C4' G B 53 OK 2497 2494 2496 2518 C4' U B 54 OK 2520 2517 2519 2538 C4' A B 55 OK 2540 2537 2539 2560 C4' A B 56 OK 2562 2559 2561 2582 C4' A B 57 OK 2584 2581 2583 2604 C4' A B 58 OK 2606 2603 2605 2626 C4' U B 59 OK 2628 2625 2627 2646 C4' C B 60 OK 2648 2645 2647 2666 C4' C B 61 OK 2668 2665 2667 2686 C4' U B 62 OK 2688 2685 2687 2706 C4' G B 63 OK 2708 2705 2707 2729 C4' A B 64 OK 2731 2728 2730 2751 C4' C B 65 OK 2753 2750 2752 2771 C4' U B 66 OK 2773 2770 2772 2791 C4' A B 67 OK 2793 2790 2792 2813 C4' C B 68 OK 2815 2812 2814 2833 C4' U B 69 OK 2835 2832 2834 2853 C4' G B 70 OK 2855 2852 2854 2876 C4' G B 71 OK 2878 2875 2877 2899 C4' U B 72 OK 2901 2898 2900 2919 C4' C B 73 OK 2921 2918 2920 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 5 1 3 25 C5' G A 6 24 26 48 C5' C A 7 47 49 68 C5' C A 8 67 69 88 C5' A A 9 87 89 110 C5' G A 10 109 111 133 C5' U A 11 132 134 153 C5' A A 12 152 154 175 C5' U A 13 174 176 195 C5' A A 14 194 196 217 C5' A A 15 216 218 239 C5' C A 16 238 240 259 C5' C A 17 258 260 279 C5' U A 18 278 280 299 C5' C A 19 298 300 319 C5' A A 20 318 320 341 C5' A A 21 340 342 363 C5' U A 22 362 364 383 C5' G A 23 382 384 406 C5' A A 24 405 407 428 C5' U A 25 427 429 448 C5' A A 26 447 449 470 C5' U A 27 469 471 490 C5' G A 28 489 491 513 C5' G A 29 512 514 536 C5' U A 30 535 537 556 C5' U A 31 555 557 576 C5' U A 32 575 577 596 C5' G A 33 595 597 619 C5' A A 34 618 620 641 C5' G A 35 640 642 664 C5' G A 36 663 665 687 C5' G A 37 686 688 710 C5' U A 38 709 711 730 C5' G A 39 729 731 753 C5' U A 40 752 754 773 C5' C A 41 772 774 793 C5' U A 42 792 794 813 C5' A A 43 812 814 835 C5' C A 44 834 836 855 C5' C A 45 854 856 875 C5' A A 46 874 876 897 C5' G A 47 896 898 920 C5' G A 48 919 921 943 C5' A A 49 942 944 965 C5' A A 50 964 966 987 C5' C A 51 986 988 1007 C5' C A 52 1006 1008 1027 C5' G A 53 1026 1028 1050 C5' U A 54 1049 1051 1070 C5' A A 55 1069 1071 1092 C5' A A 56 1091 1093 1114 C5' A A 57 1113 1115 1136 C5' A A 58 1135 1137 1158 C5' U A 59 1157 1159 1178 C5' C A 60 1177 1179 1198 C5' C A 61 1197 1199 1218 C5' U A 62 1217 1219 1238 C5' G A 63 1237 1239 1261 C5' A A 64 1260 1262 1283 C5' C A 65 1282 1284 1303 C5' U A 66 1302 1304 1323 C5' A A 67 1322 1324 1345 C5' C A 68 1344 1346 1365 C5' U A 69 1364 1366 1385 C5' G A 70 1384 1386 1408 C5' G A 71 1407 1409 1431 C5' U A 72 1430 1432 1451 C5' C A 73 1450 1452 1469 C5' G B 5 1468 1470 1492 C5' G B 6 1491 1493 1515 C5' C B 7 1514 1516 1535 C5' C B 8 1534 1536 1555 C5' A B 9 1554 1556 1577 C5' G B 10 1576 1578 1600 C5' U B 11 1599 1601 1620 C5' A B 12 1619 1621 1642 C5' U B 13 1641 1643 1662 C5' A B 14 1661 1663 1684 C5' A B 15 1683 1685 1706 C5' C B 16 1705 1707 1726 C5' C B 17 1725 1727 1746 C5' U B 18 1745 1747 1766 C5' C B 19 1765 1767 1786 C5' A B 20 1785 1787 1808 C5' A B 21 1807 1809 1830 C5' U B 22 1829 1831 1850 C5' G B 23 1849 1851 1873 C5' A B 24 1872 1874 1895 C5' U B 25 1894 1896 1915 C5' A B 26 1914 1916 1937 C5' U B 27 1936 1938 1957 C5' G B 28 1956 1958 1980 C5' G B 29 1979 1981 2003 C5' U B 30 2002 2004 2023 C5' U B 31 2022 2024 2043 C5' U B 32 2042 2044 2063 C5' G B 33 2062 2064 2086 C5' A B 34 2085 2087 2108 C5' G B 35 2107 2109 2131 C5' G B 36 2130 2132 2154 C5' G B 37 2153 2155 2177 C5' U B 38 2176 2178 2197 C5' G B 39 2196 2198 2220 C5' U B 40 2219 2221 2240 C5' C B 41 2239 2241 2260 C5' U B 42 2259 2261 2280 C5' A B 43 2279 2281 2302 C5' C B 44 2301 2303 2322 C5' C B 45 2321 2323 2342 C5' A B 46 2341 2343 2364 C5' G B 47 2363 2365 2387 C5' G B 48 2386 2388 2410 C5' A B 49 2409 2411 2432 C5' A B 50 2431 2433 2454 C5' C B 51 2453 2455 2474 C5' C B 52 2473 2475 2494 C5' G B 53 2493 2495 2517 C5' U B 54 2516 2518 2537 C5' A B 55 2536 2538 2559 C5' A B 56 2558 2560 2581 C5' A B 57 2580 2582 2603 C5' A B 58 2602 2604 2625 C5' U B 59 2624 2626 2645 C5' C B 60 2644 2646 2665 C5' C B 61 2664 2666 2685 C5' U B 62 2684 2686 2705 C5' G B 63 2704 2706 2728 C5' A B 64 2727 2729 2750 C5' C B 65 2749 2751 2770 C5' U B 66 2769 2771 2790 C5' A B 67 2789 2791 2812 C5' C B 68 2811 2813 2832 C5' U B 69 2831 2833 2852 C5' G B 70 2851 2853 2875 C5' G B 71 2874 2876 2898 C5' U B 72 2897 2899 2918 C5' C B 73 2917 2919 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P G A 6 distorted distorted 6 22 23 24 44 P C A 7 distorted distorted 29 45 46 47 64 P C A 8 distorted distorted 52 65 66 67 84 P A A 9 distorted distorted 72 85 86 87 106 P G A 10 distorted distorted 92 107 108 109 129 P U A 11 distorted distorted 114 130 131 132 149 P A A 12 distorted distorted 137 150 151 152 171 P U A 13 distorted distorted 157 172 173 174 191 P A A 14 distorted distorted 179 192 193 194 213 P A A 15 distorted distorted 199 214 215 216 235 P C A 16 distorted distorted 221 236 237 238 255 P C A 17 distorted distorted 243 256 257 258 275 P U A 18 distorted distorted 263 276 277 278 295 P C A 19 distorted distorted 283 296 297 298 315 P A A 20 distorted distorted 303 316 317 318 337 P A A 21 distorted distorted 323 338 339 340 359 P U A 22 distorted distorted 345 360 361 362 379 P G A 23 distorted distorted 367 380 381 382 402 P A A 24 distorted distorted 387 403 404 405 424 P U A 25 distorted distorted 410 425 426 427 444 P A A 26 distorted distorted 432 445 446 447 466 P U A 27 distorted distorted 452 467 468 469 486 P G A 28 distorted distorted 474 487 488 489 509 P G A 29 distorted distorted 494 510 511 512 532 P U A 30 distorted distorted 517 533 534 535 552 P U A 31 distorted distorted 540 553 554 555 572 P U A 32 distorted distorted 560 573 574 575 592 P G A 33 distorted distorted 580 593 594 595 615 P A A 34 distorted distorted 600 616 617 618 637 P G A 35 distorted distorted 623 638 639 640 660 P G A 36 distorted distorted 645 661 662 663 683 P G A 37 distorted distorted 668 684 685 686 706 P U A 38 distorted distorted 691 707 708 709 726 P G A 39 distorted distorted 714 727 728 729 749 P U A 40 distorted distorted 734 750 751 752 769 P C A 41 distorted distorted 757 770 771 772 789 P U A 42 distorted distorted 777 790 791 792 809 P A A 43 distorted distorted 797 810 811 812 831 P C A 44 distorted distorted 817 832 833 834 851 P C A 45 distorted distorted 839 852 853 854 871 P A A 46 distorted distorted 859 872 873 874 893 P G A 47 distorted distorted 879 894 895 896 916 P G A 48 distorted distorted 901 917 918 919 939 P A A 49 distorted distorted 924 940 941 942 961 P A A 50 distorted distorted 947 962 963 964 983 P C A 51 distorted distorted 969 984 985 986 1003 P C A 52 distorted distorted 991 1004 1005 1006 1023 P G A 53 distorted distorted 1011 1024 1025 1026 1046 P U A 54 distorted distorted 1031 1047 1048 1049 1066 P A A 55 distorted distorted 1054 1067 1068 1069 1088 P A A 56 distorted distorted 1074 1089 1090 1091 1110 P A A 57 distorted distorted 1096 1111 1112 1113 1132 P A A 58 distorted distorted 1118 1133 1134 1135 1154 P U A 59 distorted distorted 1140 1155 1156 1157 1174 P C A 60 distorted distorted 1162 1175 1176 1177 1194 P C A 61 distorted distorted 1182 1195 1196 1197 1214 P U A 62 distorted distorted 1202 1215 1216 1217 1234 P G A 63 distorted distorted 1222 1235 1236 1237 1257 P A A 64 distorted distorted 1242 1258 1259 1260 1279 P C A 65 distorted distorted 1265 1280 1281 1282 1299 P U A 66 distorted distorted 1287 1300 1301 1302 1319 P A A 67 distorted distorted 1307 1320 1321 1322 1341 P C A 68 distorted distorted 1327 1342 1343 1344 1361 P U A 69 distorted distorted 1349 1362 1363 1364 1381 P G A 70 distorted distorted 1369 1382 1383 1384 1404 P G A 71 distorted distorted 1389 1405 1406 1407 1427 P U A 72 distorted distorted 1412 1428 1429 1430 1447 P C A 73 distorted distorted 1435 1448 1449 1450 1488 P G B 6 distorted distorted 1473 1489 1490 1491 1511 P C B 7 distorted distorted 1496 1512 1513 1514 1531 P C B 8 distorted distorted 1519 1532 1533 1534 1551 P A B 9 distorted distorted 1539 1552 1553 1554 1573 P G B 10 distorted distorted 1559 1574 1575 1576 1596 P U B 11 distorted distorted 1581 1597 1598 1599 1616 P A B 12 distorted distorted 1604 1617 1618 1619 1638 P U B 13 distorted distorted 1624 1639 1640 1641 1658 P A B 14 distorted distorted 1646 1659 1660 1661 1680 P A B 15 distorted distorted 1666 1681 1682 1683 1702 P C B 16 distorted distorted 1688 1703 1704 1705 1722 P C B 17 distorted distorted 1710 1723 1724 1725 1742 P U B 18 distorted distorted 1730 1743 1744 1745 1762 P C B 19 distorted distorted 1750 1763 1764 1765 1782 P A B 20 distorted distorted 1770 1783 1784 1785 1804 P A B 21 distorted distorted 1790 1805 1806 1807 1826 P U B 22 distorted distorted 1812 1827 1828 1829 1846 P G B 23 distorted distorted 1834 1847 1848 1849 1869 P A B 24 distorted distorted 1854 1870 1871 1872 1891 P U B 25 distorted distorted 1877 1892 1893 1894 1911 P A B 26 distorted distorted 1899 1912 1913 1914 1933 P U B 27 distorted distorted 1919 1934 1935 1936 1953 P G B 28 distorted distorted 1941 1954 1955 1956 1976 P G B 29 distorted distorted 1961 1977 1978 1979 1999 P U B 30 distorted distorted 1984 2000 2001 2002 2019 P U B 31 distorted distorted 2007 2020 2021 2022 2039 P U B 32 distorted distorted 2027 2040 2041 2042 2059 P G B 33 distorted distorted 2047 2060 2061 2062 2082 P A B 34 distorted distorted 2067 2083 2084 2085 2104 P G B 35 distorted distorted 2090 2105 2106 2107 2127 P G B 36 distorted distorted 2112 2128 2129 2130 2150 P G B 37 distorted distorted 2135 2151 2152 2153 2173 P U B 38 distorted distorted 2158 2174 2175 2176 2193 P G B 39 distorted distorted 2181 2194 2195 2196 2216 P U B 40 distorted distorted 2201 2217 2218 2219 2236 P C B 41 distorted distorted 2224 2237 2238 2239 2256 P U B 42 distorted distorted 2244 2257 2258 2259 2276 P A B 43 distorted distorted 2264 2277 2278 2279 2298 P C B 44 distorted distorted 2284 2299 2300 2301 2318 P C B 45 distorted distorted 2306 2319 2320 2321 2338 P A B 46 distorted distorted 2326 2339 2340 2341 2360 P G B 47 distorted distorted 2346 2361 2362 2363 2383 P G B 48 distorted distorted 2368 2384 2385 2386 2406 P A B 49 distorted distorted 2391 2407 2408 2409 2428 P A B 50 distorted distorted 2414 2429 2430 2431 2450 P C B 51 distorted distorted 2436 2451 2452 2453 2470 P C B 52 distorted distorted 2458 2471 2472 2473 2490 P G B 53 distorted distorted 2478 2491 2492 2493 2513 P U B 54 distorted distorted 2498 2514 2515 2516 2533 P A B 55 distorted distorted 2521 2534 2535 2536 2555 P A B 56 distorted distorted 2541 2556 2557 2558 2577 P A B 57 distorted distorted 2563 2578 2579 2580 2599 P A B 58 distorted distorted 2585 2600 2601 2602 2621 P U B 59 distorted distorted 2607 2622 2623 2624 2641 P C B 60 distorted distorted 2629 2642 2643 2644 2661 P C B 61 distorted distorted 2649 2662 2663 2664 2681 P U B 62 distorted distorted 2669 2682 2683 2684 2701 P G B 63 distorted distorted 2689 2702 2703 2704 2724 P A B 64 distorted distorted 2709 2725 2726 2727 2746 P C B 65 distorted distorted 2732 2747 2748 2749 2766 P U B 66 distorted distorted 2754 2767 2768 2769 2786 P A B 67 distorted distorted 2774 2787 2788 2789 2808 P C B 68 distorted distorted 2794 2809 2810 2811 2828 P U B 69 distorted distorted 2816 2829 2830 2831 2848 P G B 70 distorted distorted 2836 2849 2850 2851 2871 P G B 71 distorted distorted 2856 2872 2873 2874 2894 P U B 72 distorted distorted 2879 2895 2896 2897 2914 P C B 73 distorted distorted 2902 2915 2916 2917 ---------------------------------------------------------------------------------