ID code: '3DS7' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 9 C1' G A 15 beta 4 10 7 32 C1' G A 16 beta 27 33 30 55 C1' A A 17 beta 50 56 53 77 C1' C A 18 beta 72 78 75 97 C1' A A 19 beta 92 98 95 119 C1' U A 20 beta 114 120 117 139 C1' A A 21 beta 134 140 137 161 C1' C A 22 beta 156 162 159 181 C1' A A 23 beta 176 182 179 203 C1' A A 24 beta 198 204 201 225 C1' U A 25 beta 220 226 223 245 C1' C A 26 beta 240 246 243 265 C1' G A 27 beta 260 266 263 288 C1' C A 28 beta 283 289 286 308 C1' G A 29 beta 303 309 306 331 C1' U A 30 beta 326 332 329 351 C1' G A 31 beta 346 352 349 374 C1' G A 32 beta 369 375 372 397 C1' A A 33 beta 392 398 395 419 C1' U A 34 beta 414 420 417 439 C1' A A 35 beta 434 440 437 461 C1' U A 36 beta 456 462 459 481 C1' G A 37 beta 476 482 479 504 C1' G A 38 beta 499 505 502 527 C1' C A 39 beta 522 528 525 547 C1' A A 40 beta 542 548 545 569 C1' C A 41 beta 564 570 567 589 C1' G A 42 beta 584 590 587 612 C1' C A 43 beta 607 613 610 632 C1' A A 44 beta 627 633 630 654 C1' A A 45 beta 649 655 652 676 C1' G A 46 beta 671 677 674 699 C1' A A 47 beta 694 700 697 721 C1' U A 48 beta 716 722 719 741 C1' C A 49 beta 736 742 739 761 C1' C A 50 beta 756 762 759 781 C1' C A 51 beta 776 782 779 801 C1' G A 52 beta 796 802 799 824 C1' C A 53 beta 819 825 822 844 C1' C A 54 beta 839 845 842 864 C1' G A 55 beta 859 865 862 887 C1' G A 56 beta 882 888 885 910 C1' G A 57 beta 905 911 908 933 C1' C A 58 beta 928 934 931 953 C1' A A 59 beta 948 954 951 975 C1' C A 60 beta 970 976 973 995 C1' C A 61 beta 990 996 993 1015 C1' G A 62 beta 1010 1016 1013 1038 C1' U A 63 beta 1033 1039 1036 1058 C1' A A 64 beta 1053 1059 1056 1080 C1' A A 65 beta 1075 1081 1078 1102 C1' A A 66 beta 1097 1103 1100 1124 C1' U A 67 beta 1119 1125 1122 1144 C1' G A 68 beta 1139 1145 1142 1167 C1' U A 69 beta 1162 1168 1165 1187 C1' C A 70 beta 1182 1188 1185 1207 C1' C A 71 beta 1202 1208 1205 1227 C1' G A 72 beta 1222 1228 1225 1250 C1' A A 73 beta 1245 1251 1248 1272 C1' C A 74 beta 1267 1273 1270 1292 C1' U A 75 beta 1287 1293 1290 1312 C1' A A 76 beta 1307 1313 1310 1334 C1' U A 77 beta 1329 1335 1332 1354 C1' G A 78 beta 1349 1355 1352 1377 C1' U A 79 beta 1372 1378 1375 1397 C1' C A 80 beta 1392 1398 1395 1417 C1' C A 81 beta 1412 1418 1415 1438 C1' G B 215 beta 1433 1439 1436 1461 C1' G B 216 beta 1456 1462 1459 1484 C1' A B 217 beta 1479 1485 1482 1506 C1' C B 218 beta 1501 1507 1504 1526 C1' A B 219 beta 1521 1527 1524 1548 C1' U B 220 beta 1543 1549 1546 1568 C1' A B 221 beta 1563 1569 1566 1590 C1' C B 222 beta 1585 1591 1588 1610 C1' A B 223 beta 1605 1611 1608 1632 C1' A B 224 beta 1627 1633 1630 1654 C1' U B 225 beta 1649 1655 1652 1674 C1' C B 226 beta 1669 1675 1672 1694 C1' G B 227 beta 1689 1695 1692 1717 C1' C B 228 beta 1712 1718 1715 1737 C1' G B 229 beta 1732 1738 1735 1760 C1' U B 230 beta 1755 1761 1758 1780 C1' G B 231 beta 1775 1781 1778 1803 C1' G B 232 beta 1798 1804 1801 1826 C1' A B 233 beta 1821 1827 1824 1848 C1' U B 234 beta 1843 1849 1846 1868 C1' A B 235 beta 1863 1869 1866 1890 C1' U B 236 beta 1885 1891 1888 1910 C1' G B 237 beta 1905 1911 1908 1933 C1' G B 238 beta 1928 1934 1931 1956 C1' C B 239 beta 1951 1957 1954 1976 C1' A B 240 beta 1971 1977 1974 1998 C1' C B 241 beta 1993 1999 1996 2018 C1' G B 242 beta 2013 2019 2016 2041 C1' C B 243 beta 2036 2042 2039 2061 C1' A B 244 beta 2056 2062 2059 2083 C1' A B 245 beta 2078 2084 2081 2105 C1' G B 246 beta 2100 2106 2103 2128 C1' A B 247 beta 2123 2129 2126 2150 C1' U B 248 beta 2145 2151 2148 2170 C1' C B 249 beta 2165 2171 2168 2190 C1' C B 250 beta 2185 2191 2188 2210 C1' C B 251 beta 2205 2211 2208 2230 C1' G B 252 beta 2225 2231 2228 2253 C1' C B 253 beta 2248 2254 2251 2273 C1' C B 254 beta 2268 2274 2271 2293 C1' G B 255 beta 2288 2294 2291 2316 C1' G B 256 beta 2311 2317 2314 2339 C1' G B 257 beta 2334 2340 2337 2362 C1' C B 258 beta 2357 2363 2360 2382 C1' A B 259 beta 2377 2383 2380 2404 C1' C B 260 beta 2399 2405 2402 2424 C1' C B 261 beta 2419 2425 2422 2444 C1' G B 262 beta 2439 2445 2442 2467 C1' U B 263 beta 2462 2468 2465 2487 C1' A B 264 beta 2482 2488 2485 2509 C1' A B 265 beta 2504 2510 2507 2531 C1' A B 266 beta 2526 2532 2529 2553 C1' U B 267 beta 2548 2554 2551 2573 C1' G B 268 beta 2568 2574 2571 2596 C1' U B 269 beta 2591 2597 2594 2616 C1' C B 270 beta 2611 2617 2614 2636 C1' C B 271 beta 2631 2637 2634 2656 C1' G B 272 beta 2651 2657 2654 2679 C1' A B 273 beta 2674 2680 2677 2701 C1' C B 274 beta 2696 2702 2699 2721 C1' U B 275 beta 2716 2722 2719 2741 C1' A B 276 beta 2736 2742 2739 2763 C1' U B 277 beta 2758 2764 2761 2783 C1' G B 278 beta 2778 2784 2781 2806 C1' U B 279 beta 2801 2807 2804 2826 C1' C B 280 beta 2821 2827 2824 2846 C1' C B 281 beta 2841 2847 2844 2860 C1' GNG A 120 beta 2859 2861 2872 2918 C1' GNG B 320 beta 2917 2919 2930 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 7 C2' G A 15 OK 9 5 8 30 C2' G A 16 OK 32 28 31 53 C2' A A 17 OK 55 51 54 75 C2' C A 18 OK 77 73 76 95 C2' A A 19 OK 97 93 96 117 C2' U A 20 OK 119 115 118 137 C2' A A 21 OK 139 135 138 159 C2' C A 22 OK 161 157 160 179 C2' A A 23 OK 181 177 180 201 C2' A A 24 OK 203 199 202 223 C2' U A 25 OK 225 221 224 243 C2' C A 26 OK 245 241 244 263 C2' G A 27 OK 265 261 264 286 C2' C A 28 OK 288 284 287 306 C2' G A 29 OK 308 304 307 329 C2' U A 30 OK 331 327 330 349 C2' G A 31 OK 351 347 350 372 C2' G A 32 OK 374 370 373 395 C2' A A 33 OK 397 393 396 417 C2' U A 34 OK 419 415 418 437 C2' A A 35 OK 439 435 438 459 C2' U A 36 OK 461 457 460 479 C2' G A 37 OK 481 477 480 502 C2' G A 38 OK 504 500 503 525 C2' C A 39 OK 527 523 526 545 C2' A A 40 OK 547 543 546 567 C2' C A 41 OK 569 565 568 587 C2' G A 42 OK 589 585 588 610 C2' C A 43 OK 612 608 611 630 C2' A A 44 OK 632 628 631 652 C2' A A 45 OK 654 650 653 674 C2' G A 46 OK 676 672 675 697 C2' A A 47 OK 699 695 698 719 C2' U A 48 OK 721 717 720 739 C2' C A 49 OK 741 737 740 759 C2' C A 50 OK 761 757 760 779 C2' C A 51 OK 781 777 780 799 C2' G A 52 OK 801 797 800 822 C2' C A 53 OK 824 820 823 842 C2' C A 54 OK 844 840 843 862 C2' G A 55 OK 864 860 863 885 C2' G A 56 OK 887 883 886 908 C2' G A 57 OK 910 906 909 931 C2' C A 58 OK 933 929 932 951 C2' A A 59 OK 953 949 952 973 C2' C A 60 OK 975 971 974 993 C2' C A 61 OK 995 991 994 1013 C2' G A 62 OK 1015 1011 1014 1036 C2' U A 63 OK 1038 1034 1037 1056 C2' A A 64 OK 1058 1054 1057 1078 C2' A A 65 OK 1080 1076 1079 1100 C2' A A 66 OK 1102 1098 1101 1122 C2' U A 67 OK 1124 1120 1123 1142 C2' G A 68 OK 1144 1140 1143 1165 C2' U A 69 OK 1167 1163 1166 1185 C2' C A 70 OK 1187 1183 1186 1205 C2' C A 71 OK 1207 1203 1206 1225 C2' G A 72 OK 1227 1223 1226 1248 C2' A A 73 OK 1250 1246 1249 1270 C2' C A 74 OK 1272 1268 1271 1290 C2' U A 75 OK 1292 1288 1291 1310 C2' A A 76 OK 1312 1308 1311 1332 C2' U A 77 OK 1334 1330 1333 1352 C2' G A 78 OK 1354 1350 1353 1375 C2' U A 79 OK 1377 1373 1376 1395 C2' C A 80 OK 1397 1393 1396 1415 C2' C A 81 OK 1417 1413 1416 1436 C2' G B 215 OK 1438 1434 1437 1459 C2' G B 216 OK 1461 1457 1460 1482 C2' A B 217 OK 1484 1480 1483 1504 C2' C B 218 OK 1506 1502 1505 1524 C2' A B 219 OK 1526 1522 1525 1546 C2' U B 220 OK 1548 1544 1547 1566 C2' A B 221 OK 1568 1564 1567 1588 C2' C B 222 OK 1590 1586 1589 1608 C2' A B 223 OK 1610 1606 1609 1630 C2' A B 224 OK 1632 1628 1631 1652 C2' U B 225 OK 1654 1650 1653 1672 C2' C B 226 OK 1674 1670 1673 1692 C2' G B 227 OK 1694 1690 1693 1715 C2' C B 228 OK 1717 1713 1716 1735 C2' G B 229 OK 1737 1733 1736 1758 C2' U B 230 OK 1760 1756 1759 1778 C2' G B 231 OK 1780 1776 1779 1801 C2' G B 232 OK 1803 1799 1802 1824 C2' A B 233 OK 1826 1822 1825 1846 C2' U B 234 OK 1848 1844 1847 1866 C2' A B 235 OK 1868 1864 1867 1888 C2' U B 236 OK 1890 1886 1889 1908 C2' G B 237 OK 1910 1906 1909 1931 C2' G B 238 OK 1933 1929 1932 1954 C2' C B 239 OK 1956 1952 1955 1974 C2' A B 240 OK 1976 1972 1975 1996 C2' C B 241 OK 1998 1994 1997 2016 C2' G B 242 OK 2018 2014 2017 2039 C2' C B 243 OK 2041 2037 2040 2059 C2' A B 244 OK 2061 2057 2060 2081 C2' A B 245 OK 2083 2079 2082 2103 C2' G B 246 OK 2105 2101 2104 2126 C2' A B 247 OK 2128 2124 2127 2148 C2' U B 248 OK 2150 2146 2149 2168 C2' C B 249 OK 2170 2166 2169 2188 C2' C B 250 OK 2190 2186 2189 2208 C2' C B 251 OK 2210 2206 2209 2228 C2' G B 252 OK 2230 2226 2229 2251 C2' C B 253 OK 2253 2249 2252 2271 C2' C B 254 OK 2273 2269 2272 2291 C2' G B 255 OK 2293 2289 2292 2314 C2' G B 256 OK 2316 2312 2315 2337 C2' G B 257 OK 2339 2335 2338 2360 C2' C B 258 OK 2362 2358 2361 2380 C2' A B 259 OK 2382 2378 2381 2402 C2' C B 260 OK 2404 2400 2403 2422 C2' C B 261 OK 2424 2420 2423 2442 C2' G B 262 OK 2444 2440 2443 2465 C2' U B 263 OK 2467 2463 2466 2485 C2' A B 264 OK 2487 2483 2486 2507 C2' A B 265 OK 2509 2505 2508 2529 C2' A B 266 OK 2531 2527 2530 2551 C2' U B 267 OK 2553 2549 2552 2571 C2' G B 268 OK 2573 2569 2572 2594 C2' U B 269 OK 2596 2592 2595 2614 C2' C B 270 OK 2616 2612 2615 2634 C2' C B 271 OK 2636 2632 2635 2654 C2' G B 272 OK 2656 2652 2655 2677 C2' A B 273 OK 2679 2675 2678 2699 C2' C B 274 OK 2701 2697 2700 2719 C2' U B 275 OK 2721 2717 2720 2739 C2' A B 276 OK 2741 2737 2740 2761 C2' U B 277 OK 2763 2759 2762 2781 C2' G B 278 OK 2783 2779 2782 2804 C2' U B 279 OK 2806 2802 2805 2824 C2' C B 280 OK 2826 2822 2825 2844 C2' C B 281 OK 2846 2842 2845 2872 C2' GNG A 120 2860 2873 2930 C2' GNG B 320 2918 2931 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 5 C3' G A 15 OK 3 6 7 28 C3' G A 16 OK 26 29 30 51 C3' A A 17 OK 49 52 53 73 C3' C A 18 OK 71 74 75 93 C3' A A 19 OK 91 94 95 115 C3' U A 20 OK 113 116 117 135 C3' A A 21 OK 133 136 137 157 C3' C A 22 OK 155 158 159 177 C3' A A 23 OK 175 178 179 199 C3' A A 24 OK 197 200 201 221 C3' U A 25 OK 219 222 223 241 C3' C A 26 OK 239 242 243 261 C3' G A 27 OK 259 262 263 284 C3' C A 28 OK 282 285 286 304 C3' G A 29 OK 302 305 306 327 C3' U A 30 OK 325 328 329 347 C3' G A 31 OK 345 348 349 370 C3' G A 32 OK 368 371 372 393 C3' A A 33 OK 391 394 395 415 C3' U A 34 OK 413 416 417 435 C3' A A 35 OK 433 436 437 457 C3' U A 36 OK 455 458 459 477 C3' G A 37 OK 475 478 479 500 C3' G A 38 OK 498 501 502 523 C3' C A 39 OK 521 524 525 543 C3' A A 40 OK 541 544 545 565 C3' C A 41 OK 563 566 567 585 C3' G A 42 OK 583 586 587 608 C3' C A 43 OK 606 609 610 628 C3' A A 44 OK 626 629 630 650 C3' A A 45 OK 648 651 652 672 C3' G A 46 OK 670 673 674 695 C3' A A 47 OK 693 696 697 717 C3' U A 48 OK 715 718 719 737 C3' C A 49 OK 735 738 739 757 C3' C A 50 OK 755 758 759 777 C3' C A 51 OK 775 778 779 797 C3' G A 52 OK 795 798 799 820 C3' C A 53 OK 818 821 822 840 C3' C A 54 OK 838 841 842 860 C3' G A 55 OK 858 861 862 883 C3' G A 56 OK 881 884 885 906 C3' G A 57 OK 904 907 908 929 C3' C A 58 OK 927 930 931 949 C3' A A 59 OK 947 950 951 971 C3' C A 60 OK 969 972 973 991 C3' C A 61 OK 989 992 993 1011 C3' G A 62 OK 1009 1012 1013 1034 C3' U A 63 OK 1032 1035 1036 1054 C3' A A 64 OK 1052 1055 1056 1076 C3' A A 65 OK 1074 1077 1078 1098 C3' A A 66 OK 1096 1099 1100 1120 C3' U A 67 OK 1118 1121 1122 1140 C3' G A 68 OK 1138 1141 1142 1163 C3' U A 69 OK 1161 1164 1165 1183 C3' C A 70 OK 1181 1184 1185 1203 C3' C A 71 OK 1201 1204 1205 1223 C3' G A 72 OK 1221 1224 1225 1246 C3' A A 73 OK 1244 1247 1248 1268 C3' C A 74 OK 1266 1269 1270 1288 C3' U A 75 OK 1286 1289 1290 1308 C3' A A 76 OK 1306 1309 1310 1330 C3' U A 77 OK 1328 1331 1332 1350 C3' G A 78 OK 1348 1351 1352 1373 C3' U A 79 OK 1371 1374 1375 1393 C3' C A 80 OK 1391 1394 1395 1413 C3' C A 81 OK 1411 1414 1415 1434 C3' G B 215 OK 1432 1435 1436 1457 C3' G B 216 OK 1455 1458 1459 1480 C3' A B 217 OK 1478 1481 1482 1502 C3' C B 218 OK 1500 1503 1504 1522 C3' A B 219 OK 1520 1523 1524 1544 C3' U B 220 OK 1542 1545 1546 1564 C3' A B 221 OK 1562 1565 1566 1586 C3' C B 222 OK 1584 1587 1588 1606 C3' A B 223 OK 1604 1607 1608 1628 C3' A B 224 OK 1626 1629 1630 1650 C3' U B 225 OK 1648 1651 1652 1670 C3' C B 226 OK 1668 1671 1672 1690 C3' G B 227 OK 1688 1691 1692 1713 C3' C B 228 OK 1711 1714 1715 1733 C3' G B 229 OK 1731 1734 1735 1756 C3' U B 230 OK 1754 1757 1758 1776 C3' G B 231 OK 1774 1777 1778 1799 C3' G B 232 OK 1797 1800 1801 1822 C3' A B 233 OK 1820 1823 1824 1844 C3' U B 234 OK 1842 1845 1846 1864 C3' A B 235 OK 1862 1865 1866 1886 C3' U B 236 OK 1884 1887 1888 1906 C3' G B 237 OK 1904 1907 1908 1929 C3' G B 238 OK 1927 1930 1931 1952 C3' C B 239 OK 1950 1953 1954 1972 C3' A B 240 OK 1970 1973 1974 1994 C3' C B 241 OK 1992 1995 1996 2014 C3' G B 242 OK 2012 2015 2016 2037 C3' C B 243 OK 2035 2038 2039 2057 C3' A B 244 OK 2055 2058 2059 2079 C3' A B 245 OK 2077 2080 2081 2101 C3' G B 246 OK 2099 2102 2103 2124 C3' A B 247 OK 2122 2125 2126 2146 C3' U B 248 OK 2144 2147 2148 2166 C3' C B 249 OK 2164 2167 2168 2186 C3' C B 250 OK 2184 2187 2188 2206 C3' C B 251 OK 2204 2207 2208 2226 C3' G B 252 OK 2224 2227 2228 2249 C3' C B 253 OK 2247 2250 2251 2269 C3' C B 254 OK 2267 2270 2271 2289 C3' G B 255 OK 2287 2290 2291 2312 C3' G B 256 OK 2310 2313 2314 2335 C3' G B 257 OK 2333 2336 2337 2358 C3' C B 258 OK 2356 2359 2360 2378 C3' A B 259 OK 2376 2379 2380 2400 C3' C B 260 OK 2398 2401 2402 2420 C3' C B 261 OK 2418 2421 2422 2440 C3' G B 262 OK 2438 2441 2442 2463 C3' U B 263 OK 2461 2464 2465 2483 C3' A B 264 OK 2481 2484 2485 2505 C3' A B 265 OK 2503 2506 2507 2527 C3' A B 266 OK 2525 2528 2529 2549 C3' U B 267 OK 2547 2550 2551 2569 C3' G B 268 OK 2567 2570 2571 2592 C3' U B 269 OK 2590 2593 2594 2612 C3' C B 270 OK 2610 2613 2614 2632 C3' C B 271 OK 2630 2633 2634 2652 C3' G B 272 OK 2650 2653 2654 2675 C3' A B 273 OK 2673 2676 2677 2697 C3' C B 274 OK 2695 2698 2699 2717 C3' U B 275 OK 2715 2718 2719 2737 C3' A B 276 OK 2735 2738 2739 2759 C3' U B 277 OK 2757 2760 2761 2779 C3' G B 278 OK 2777 2780 2781 2802 C3' U B 279 OK 2800 2803 2804 2822 C3' C B 280 OK 2820 2823 2824 2842 C3' C B 281 OK 2840 2843 2844 2873 C3' GNG A 120 OK 2858 2874 2872 2931 C3' GNG B 320 OK 2916 2932 2930 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 3 C4' G A 15 OK 5 2 4 26 C4' G A 16 OK 28 25 27 49 C4' A A 17 OK 51 48 50 71 C4' C A 18 OK 73 70 72 91 C4' A A 19 OK 93 90 92 113 C4' U A 20 OK 115 112 114 133 C4' A A 21 OK 135 132 134 155 C4' C A 22 OK 157 154 156 175 C4' A A 23 OK 177 174 176 197 C4' A A 24 OK 199 196 198 219 C4' U A 25 OK 221 218 220 239 C4' C A 26 OK 241 238 240 259 C4' G A 27 OK 261 258 260 282 C4' C A 28 OK 284 281 283 302 C4' G A 29 OK 304 301 303 325 C4' U A 30 OK 327 324 326 345 C4' G A 31 OK 347 344 346 368 C4' G A 32 OK 370 367 369 391 C4' A A 33 OK 393 390 392 413 C4' U A 34 OK 415 412 414 433 C4' A A 35 OK 435 432 434 455 C4' U A 36 OK 457 454 456 475 C4' G A 37 OK 477 474 476 498 C4' G A 38 OK 500 497 499 521 C4' C A 39 OK 523 520 522 541 C4' A A 40 OK 543 540 542 563 C4' C A 41 OK 565 562 564 583 C4' G A 42 OK 585 582 584 606 C4' C A 43 OK 608 605 607 626 C4' A A 44 OK 628 625 627 648 C4' A A 45 OK 650 647 649 670 C4' G A 46 OK 672 669 671 693 C4' A A 47 OK 695 692 694 715 C4' U A 48 OK 717 714 716 735 C4' C A 49 OK 737 734 736 755 C4' C A 50 OK 757 754 756 775 C4' C A 51 OK 777 774 776 795 C4' G A 52 OK 797 794 796 818 C4' C A 53 OK 820 817 819 838 C4' C A 54 OK 840 837 839 858 C4' G A 55 OK 860 857 859 881 C4' G A 56 OK 883 880 882 904 C4' G A 57 OK 906 903 905 927 C4' C A 58 OK 929 926 928 947 C4' A A 59 OK 949 946 948 969 C4' C A 60 OK 971 968 970 989 C4' C A 61 OK 991 988 990 1009 C4' G A 62 OK 1011 1008 1010 1032 C4' U A 63 OK 1034 1031 1033 1052 C4' A A 64 OK 1054 1051 1053 1074 C4' A A 65 OK 1076 1073 1075 1096 C4' A A 66 OK 1098 1095 1097 1118 C4' U A 67 OK 1120 1117 1119 1138 C4' G A 68 OK 1140 1137 1139 1161 C4' U A 69 OK 1163 1160 1162 1181 C4' C A 70 OK 1183 1180 1182 1201 C4' C A 71 OK 1203 1200 1202 1221 C4' G A 72 OK 1223 1220 1222 1244 C4' A A 73 OK 1246 1243 1245 1266 C4' C A 74 OK 1268 1265 1267 1286 C4' U A 75 OK 1288 1285 1287 1306 C4' A A 76 OK 1308 1305 1307 1328 C4' U A 77 OK 1330 1327 1329 1348 C4' G A 78 OK 1350 1347 1349 1371 C4' U A 79 OK 1373 1370 1372 1391 C4' C A 80 OK 1393 1390 1392 1411 C4' C A 81 OK 1413 1410 1412 1432 C4' G B 215 OK 1434 1431 1433 1455 C4' G B 216 OK 1457 1454 1456 1478 C4' A B 217 OK 1480 1477 1479 1500 C4' C B 218 OK 1502 1499 1501 1520 C4' A B 219 OK 1522 1519 1521 1542 C4' U B 220 OK 1544 1541 1543 1562 C4' A B 221 OK 1564 1561 1563 1584 C4' C B 222 OK 1586 1583 1585 1604 C4' A B 223 OK 1606 1603 1605 1626 C4' A B 224 OK 1628 1625 1627 1648 C4' U B 225 OK 1650 1647 1649 1668 C4' C B 226 OK 1670 1667 1669 1688 C4' G B 227 OK 1690 1687 1689 1711 C4' C B 228 OK 1713 1710 1712 1731 C4' G B 229 OK 1733 1730 1732 1754 C4' U B 230 OK 1756 1753 1755 1774 C4' G B 231 OK 1776 1773 1775 1797 C4' G B 232 OK 1799 1796 1798 1820 C4' A B 233 OK 1822 1819 1821 1842 C4' U B 234 OK 1844 1841 1843 1862 C4' A B 235 OK 1864 1861 1863 1884 C4' U B 236 OK 1886 1883 1885 1904 C4' G B 237 OK 1906 1903 1905 1927 C4' G B 238 OK 1929 1926 1928 1950 C4' C B 239 OK 1952 1949 1951 1970 C4' A B 240 OK 1972 1969 1971 1992 C4' C B 241 OK 1994 1991 1993 2012 C4' G B 242 OK 2014 2011 2013 2035 C4' C B 243 OK 2037 2034 2036 2055 C4' A B 244 OK 2057 2054 2056 2077 C4' A B 245 OK 2079 2076 2078 2099 C4' G B 246 OK 2101 2098 2100 2122 C4' A B 247 OK 2124 2121 2123 2144 C4' U B 248 OK 2146 2143 2145 2164 C4' C B 249 OK 2166 2163 2165 2184 C4' C B 250 OK 2186 2183 2185 2204 C4' C B 251 OK 2206 2203 2205 2224 C4' G B 252 OK 2226 2223 2225 2247 C4' C B 253 OK 2249 2246 2248 2267 C4' C B 254 OK 2269 2266 2268 2287 C4' G B 255 OK 2289 2286 2288 2310 C4' G B 256 OK 2312 2309 2311 2333 C4' G B 257 OK 2335 2332 2334 2356 C4' C B 258 OK 2358 2355 2357 2376 C4' A B 259 OK 2378 2375 2377 2398 C4' C B 260 OK 2400 2397 2399 2418 C4' C B 261 OK 2420 2417 2419 2438 C4' G B 262 OK 2440 2437 2439 2461 C4' U B 263 OK 2463 2460 2462 2481 C4' A B 264 OK 2483 2480 2482 2503 C4' A B 265 OK 2505 2502 2504 2525 C4' A B 266 OK 2527 2524 2526 2547 C4' U B 267 OK 2549 2546 2548 2567 C4' G B 268 OK 2569 2566 2568 2590 C4' U B 269 OK 2592 2589 2591 2610 C4' C B 270 OK 2612 2609 2611 2630 C4' C B 271 OK 2632 2629 2631 2650 C4' G B 272 OK 2652 2649 2651 2673 C4' A B 273 OK 2675 2672 2674 2695 C4' C B 274 OK 2697 2694 2696 2715 C4' U B 275 OK 2717 2714 2716 2735 C4' A B 276 OK 2737 2734 2736 2757 C4' U B 277 OK 2759 2756 2758 2777 C4' G B 278 OK 2779 2776 2778 2800 C4' U B 279 OK 2802 2799 2801 2820 C4' C B 280 OK 2822 2819 2821 2840 C4' C B 281 OK 2842 2839 2841 2858 C4' GNG A 120 OK 2873 2857 2859 2916 C4' GNG B 320 OK 2931 2915 2917 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 2 C5' G A 15 1 3 25 C5' G A 16 24 26 48 C5' A A 17 47 49 70 C5' C A 18 69 71 90 C5' A A 19 89 91 112 C5' U A 20 111 113 132 C5' A A 21 131 133 154 C5' C A 22 153 155 174 C5' A A 23 173 175 196 C5' A A 24 195 197 218 C5' U A 25 217 219 238 C5' C A 26 237 239 258 C5' G A 27 257 259 281 C5' C A 28 280 282 301 C5' G A 29 300 302 324 C5' U A 30 323 325 344 C5' G A 31 343 345 367 C5' G A 32 366 368 390 C5' A A 33 389 391 412 C5' U A 34 411 413 432 C5' A A 35 431 433 454 C5' U A 36 453 455 474 C5' G A 37 473 475 497 C5' G A 38 496 498 520 C5' C A 39 519 521 540 C5' A A 40 539 541 562 C5' C A 41 561 563 582 C5' G A 42 581 583 605 C5' C A 43 604 606 625 C5' A A 44 624 626 647 C5' A A 45 646 648 669 C5' G A 46 668 670 692 C5' A A 47 691 693 714 C5' U A 48 713 715 734 C5' C A 49 733 735 754 C5' C A 50 753 755 774 C5' C A 51 773 775 794 C5' G A 52 793 795 817 C5' C A 53 816 818 837 C5' C A 54 836 838 857 C5' G A 55 856 858 880 C5' G A 56 879 881 903 C5' G A 57 902 904 926 C5' C A 58 925 927 946 C5' A A 59 945 947 968 C5' C A 60 967 969 988 C5' C A 61 987 989 1008 C5' G A 62 1007 1009 1031 C5' U A 63 1030 1032 1051 C5' A A 64 1050 1052 1073 C5' A A 65 1072 1074 1095 C5' A A 66 1094 1096 1117 C5' U A 67 1116 1118 1137 C5' G A 68 1136 1138 1160 C5' U A 69 1159 1161 1180 C5' C A 70 1179 1181 1200 C5' C A 71 1199 1201 1220 C5' G A 72 1219 1221 1243 C5' A A 73 1242 1244 1265 C5' C A 74 1264 1266 1285 C5' U A 75 1284 1286 1305 C5' A A 76 1304 1306 1327 C5' U A 77 1326 1328 1347 C5' G A 78 1346 1348 1370 C5' U A 79 1369 1371 1390 C5' C A 80 1389 1391 1410 C5' C A 81 1409 1411 1431 C5' G B 215 1430 1432 1454 C5' G B 216 1453 1455 1477 C5' A B 217 1476 1478 1499 C5' C B 218 1498 1500 1519 C5' A B 219 1518 1520 1541 C5' U B 220 1540 1542 1561 C5' A B 221 1560 1562 1583 C5' C B 222 1582 1584 1603 C5' A B 223 1602 1604 1625 C5' A B 224 1624 1626 1647 C5' U B 225 1646 1648 1667 C5' C B 226 1666 1668 1687 C5' G B 227 1686 1688 1710 C5' C B 228 1709 1711 1730 C5' G B 229 1729 1731 1753 C5' U B 230 1752 1754 1773 C5' G B 231 1772 1774 1796 C5' G B 232 1795 1797 1819 C5' A B 233 1818 1820 1841 C5' U B 234 1840 1842 1861 C5' A B 235 1860 1862 1883 C5' U B 236 1882 1884 1903 C5' G B 237 1902 1904 1926 C5' G B 238 1925 1927 1949 C5' C B 239 1948 1950 1969 C5' A B 240 1968 1970 1991 C5' C B 241 1990 1992 2011 C5' G B 242 2010 2012 2034 C5' C B 243 2033 2035 2054 C5' A B 244 2053 2055 2076 C5' A B 245 2075 2077 2098 C5' G B 246 2097 2099 2121 C5' A B 247 2120 2122 2143 C5' U B 248 2142 2144 2163 C5' C B 249 2162 2164 2183 C5' C B 250 2182 2184 2203 C5' C B 251 2202 2204 2223 C5' G B 252 2222 2224 2246 C5' C B 253 2245 2247 2266 C5' C B 254 2265 2267 2286 C5' G B 255 2285 2287 2309 C5' G B 256 2308 2310 2332 C5' G B 257 2331 2333 2355 C5' C B 258 2354 2356 2375 C5' A B 259 2374 2376 2397 C5' C B 260 2396 2398 2417 C5' C B 261 2416 2418 2437 C5' G B 262 2436 2438 2460 C5' U B 263 2459 2461 2480 C5' A B 264 2479 2481 2502 C5' A B 265 2501 2503 2524 C5' A B 266 2523 2525 2546 C5' U B 267 2545 2547 2566 C5' G B 268 2565 2567 2589 C5' U B 269 2588 2590 2609 C5' C B 270 2608 2610 2629 C5' C B 271 2628 2630 2649 C5' G B 272 2648 2650 2672 C5' A B 273 2671 2673 2694 C5' C B 274 2693 2695 2714 C5' U B 275 2713 2715 2734 C5' A B 276 2733 2735 2756 C5' U B 277 2755 2757 2776 C5' G B 278 2775 2777 2799 C5' U B 279 2798 2800 2819 C5' C B 280 2818 2820 2839 C5' C B 281 2838 2840 2857 C5' GNG A 120 2856 2858 2915 C5' GNG B 320 2914 2916 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 21 P G A 16 distorted distorted 6 22 23 24 44 P A A 17 distorted distorted 29 45 46 47 66 P C A 18 distorted distorted 52 67 68 69 86 P A A 19 distorted distorted 74 87 88 89 108 P U A 20 distorted distorted 94 109 110 111 128 P A A 21 distorted distorted 116 129 130 131 150 P C A 22 distorted distorted 136 151 152 153 170 P A A 23 distorted distorted 158 171 172 173 192 P A A 24 distorted distorted 178 193 194 195 214 P U A 25 distorted distorted 200 215 216 217 234 P C A 26 distorted distorted 222 235 236 237 254 P G A 27 distorted distorted 242 255 256 257 277 P C A 28 distorted distorted 262 278 279 280 297 P G A 29 distorted distorted 285 298 299 300 320 P U A 30 distorted distorted 305 321 322 323 340 P G A 31 distorted distorted 328 341 342 343 363 P G A 32 distorted distorted 348 364 365 366 386 P A A 33 distorted distorted 371 387 388 389 408 P U A 34 distorted distorted 394 409 410 411 428 P A A 35 distorted distorted 416 429 430 431 450 P U A 36 distorted distorted 436 451 452 453 470 P G A 37 distorted distorted 458 471 472 473 493 P G A 38 distorted distorted 478 494 495 496 516 P C A 39 distorted distorted 501 517 518 519 536 P A A 40 distorted distorted 524 537 538 539 558 P C A 41 distorted distorted 544 559 560 561 578 P G A 42 distorted distorted 566 579 580 581 601 P C A 43 distorted distorted 586 602 603 604 621 P A A 44 distorted distorted 609 622 623 624 643 P A A 45 distorted distorted 629 644 645 646 665 P G A 46 distorted distorted 651 666 667 668 688 P A A 47 distorted distorted 673 689 690 691 710 P U A 48 distorted distorted 696 711 712 713 730 P C A 49 distorted distorted 718 731 732 733 750 P C A 50 distorted distorted 738 751 752 753 770 P C A 51 distorted distorted 758 771 772 773 790 P G A 52 distorted distorted 778 791 792 793 813 P C A 53 distorted distorted 798 814 815 816 833 P C A 54 distorted distorted 821 834 835 836 853 P G A 55 distorted distorted 841 854 855 856 876 P G A 56 distorted distorted 861 877 878 879 899 P G A 57 distorted distorted 884 900 901 902 922 P C A 58 distorted distorted 907 923 924 925 942 P A A 59 distorted distorted 930 943 944 945 964 P C A 60 distorted distorted 950 965 966 967 984 P C A 61 distorted distorted 972 985 986 987 1004 P G A 62 distorted distorted 992 1005 1006 1007 1027 P U A 63 distorted distorted 1012 1028 1029 1030 1047 P A A 64 distorted distorted 1035 1048 1049 1050 1069 P A A 65 distorted distorted 1055 1070 1071 1072 1091 P A A 66 distorted distorted 1077 1092 1093 1094 1113 P U A 67 distorted distorted 1099 1114 1115 1116 1133 P G A 68 distorted distorted 1121 1134 1135 1136 1156 P U A 69 distorted distorted 1141 1157 1158 1159 1176 P C A 70 distorted distorted 1164 1177 1178 1179 1196 P C A 71 distorted distorted 1184 1197 1198 1199 1216 P G A 72 distorted distorted 1204 1217 1218 1219 1239 P A A 73 distorted distorted 1224 1240 1241 1242 1261 P C A 74 distorted distorted 1247 1262 1263 1264 1281 P U A 75 distorted distorted 1269 1282 1283 1284 1301 P A A 76 distorted distorted 1289 1302 1303 1304 1323 P U A 77 distorted distorted 1309 1324 1325 1326 1343 P G A 78 distorted distorted 1331 1344 1345 1346 1366 P U A 79 distorted distorted 1351 1367 1368 1369 1386 P C A 80 distorted distorted 1374 1387 1388 1389 1406 P C A 81 distorted distorted 1394 1407 1408 1409 1427 P G B 215 distorted distorted 1428 1429 1430 1450 P G B 216 distorted distorted 1435 1451 1452 1453 1473 P A B 217 distorted distorted 1458 1474 1475 1476 1495 P C B 218 distorted distorted 1481 1496 1497 1498 1515 P A B 219 distorted distorted 1503 1516 1517 1518 1537 P U B 220 distorted distorted 1523 1538 1539 1540 1557 P A B 221 distorted distorted 1545 1558 1559 1560 1579 P C B 222 distorted distorted 1565 1580 1581 1582 1599 P A B 223 distorted distorted 1587 1600 1601 1602 1621 P A B 224 distorted distorted 1607 1622 1623 1624 1643 P U B 225 distorted distorted 1629 1644 1645 1646 1663 P C B 226 distorted distorted 1651 1664 1665 1666 1683 P G B 227 distorted distorted 1671 1684 1685 1686 1706 P C B 228 distorted distorted 1691 1707 1708 1709 1726 P G B 229 distorted distorted 1714 1727 1728 1729 1749 P U B 230 distorted distorted 1734 1750 1751 1752 1769 P G B 231 distorted distorted 1757 1770 1771 1772 1792 P G B 232 distorted distorted 1777 1793 1794 1795 1815 P A B 233 distorted distorted 1800 1816 1817 1818 1837 P U B 234 distorted distorted 1823 1838 1839 1840 1857 P A B 235 distorted distorted 1845 1858 1859 1860 1879 P U B 236 distorted distorted 1865 1880 1881 1882 1899 P G B 237 distorted distorted 1887 1900 1901 1902 1922 P G B 238 distorted distorted 1907 1923 1924 1925 1945 P C B 239 distorted distorted 1930 1946 1947 1948 1965 P A B 240 distorted distorted 1953 1966 1967 1968 1987 P C B 241 distorted distorted 1973 1988 1989 1990 2007 P G B 242 distorted distorted 1995 2008 2009 2010 2030 P C B 243 distorted distorted 2015 2031 2032 2033 2050 P A B 244 distorted distorted 2038 2051 2052 2053 2072 P A B 245 distorted distorted 2058 2073 2074 2075 2094 P G B 246 distorted distorted 2080 2095 2096 2097 2117 P A B 247 distorted distorted 2102 2118 2119 2120 2139 P U B 248 distorted distorted 2125 2140 2141 2142 2159 P C B 249 distorted distorted 2147 2160 2161 2162 2179 P C B 250 distorted distorted 2167 2180 2181 2182 2199 P C B 251 distorted distorted 2187 2200 2201 2202 2219 P G B 252 distorted distorted 2207 2220 2221 2222 2242 P C B 253 distorted distorted 2227 2243 2244 2245 2262 P C B 254 distorted distorted 2250 2263 2264 2265 2282 P G B 255 distorted distorted 2270 2283 2284 2285 2305 P G B 256 distorted distorted 2290 2306 2307 2308 2328 P G B 257 distorted distorted 2313 2329 2330 2331 2351 P C B 258 distorted distorted 2336 2352 2353 2354 2371 P A B 259 distorted distorted 2359 2372 2373 2374 2393 P C B 260 distorted distorted 2379 2394 2395 2396 2413 P C B 261 distorted distorted 2401 2414 2415 2416 2433 P G B 262 distorted distorted 2421 2434 2435 2436 2456 P U B 263 distorted distorted 2441 2457 2458 2459 2476 P A B 264 distorted distorted 2464 2477 2478 2479 2498 P A B 265 distorted distorted 2484 2499 2500 2501 2520 P A B 266 distorted distorted 2506 2521 2522 2523 2542 P U B 267 distorted distorted 2528 2543 2544 2545 2562 P G B 268 distorted distorted 2550 2563 2564 2565 2585 P U B 269 distorted distorted 2570 2586 2587 2588 2605 P C B 270 distorted distorted 2593 2606 2607 2608 2625 P C B 271 distorted distorted 2613 2626 2627 2628 2645 P G B 272 distorted distorted 2633 2646 2647 2648 2668 P A B 273 distorted distorted 2653 2669 2670 2671 2690 P C B 274 distorted distorted 2676 2691 2692 2693 2710 P U B 275 distorted distorted 2698 2711 2712 2713 2730 P A B 276 distorted distorted 2718 2731 2732 2733 2752 P U B 277 distorted distorted 2738 2753 2754 2755 2772 P G B 278 distorted distorted 2760 2773 2774 2775 2795 P U B 279 distorted distorted 2780 2796 2797 2798 2815 P C B 280 distorted distorted 2803 2816 2817 2818 2835 P C B 281 distorted distorted 2823 2836 2837 2838 ---------------------------------------------------------------------------------