ID code: '1U63' CHIRALITY (03 Nov 1998) Checks the chirality and the naming of substituents of chiral and prochiral centers in nucleic acid structures. The molecular structure is read from a PDB file. Only the first model is evaluated. ---------------------------------------------------------- Center Reference for correct naming ---------------------------------------------------------- C1' alpha/beta nomenclature of anomeric sugars, base in beta position in natural nucleosids. C2' IUPAC. 1983. Eur J Biochem, 131: 9-15. C3' IUPAC. 1983. Eur J Biochem, 131: 9-15. C4' IUPAC. 1983. Eur J Biochem, 131: 9-15. C5' IUPAC. 1983. Eur J Biochem, 131: 9-15. P Brookhaven PDB entry '1BNA', O1P -> major groove, O2P -> minor groove. ---------------------------------------------------------- Author: Peter Slickers (slickers@imb-jena.de) Biocomputing, IMB Jena, Germany --------------------------------------------------------------------------------- Seq No Atom Residue H1' base O4' H1' base C2' --------------------------------------------------------------------------------- 13 C1' G B 1 beta 8 14 11 36 C1' G B 2 beta 31 37 34 59 C1' G B 3 beta 54 60 57 82 C1' A B 4 beta 77 83 80 104 C1' G B 5 beta 99 105 102 127 C1' U B 6 beta 122 128 125 147 C1' G B 7 beta 142 148 145 170 C1' A B 8 beta 165 171 168 192 C1' A B 9 beta 187 193 190 214 C1' G B 10 beta 209 215 212 237 C1' G B 11 beta 232 238 235 260 C1' A B 12 beta 255 261 258 282 C1' G B 13 beta 277 283 280 305 C1' G B 14 beta 300 306 303 328 C1' C B 15 beta 323 329 326 348 C1' U B 16 beta 343 349 346 368 C1' C B 17 beta 363 369 366 388 C1' G B 18 beta 383 389 386 411 C1' C B 19 beta 406 412 409 431 C1' G B 20 alpha 426 432 429 454 C1' A B 21 beta 449 455 452 476 C1' A B 22 beta 471 477 474 498 C1' C B 23 beta 493 499 496 518 C1' U B 24 beta 513 519 516 538 C1' C B 25 beta 533 539 536 558 C1' G B 26 beta 553 559 556 581 C1' C B 27 beta 576 582 579 601 C1' G B 28 beta 596 602 599 624 C1' A B 29 beta 619 625 622 646 C1' A B 30 beta 641 647 644 668 C1' G B 31 beta 663 669 666 691 C1' C B 32 beta 686 692 689 711 C1' C B 33 beta 706 712 709 731 C1' G B 34 beta 726 732 729 754 C1' A B 35 beta 749 755 752 776 C1' G B 36 beta 771 777 774 799 C1' A B 37 beta 794 800 797 821 C1' A B 38 beta 816 822 819 843 C1' A B 39 beta 838 844 841 865 C1' C B 40 beta 860 866 863 885 C1' U B 41 beta 880 886 883 905 C1' U B 42 beta 900 906 903 925 C1' C B 43 beta 920 926 923 945 C1' A B 44 beta 940 946 943 967 C1' C B 45 beta 962 968 965 987 C1' U B 46 beta 982 988 985 1007 C1' C B 47 beta 1002 1008 1005 1027 C1' C B 48 beta 1022 1028 1025 1047 C1' C B 49 beta 1042 1048 1045 1069 C1' G D 1 beta 1064 1070 1067 1092 C1' G D 2 beta 1087 1093 1090 1115 C1' G D 3 beta 1110 1116 1113 1138 C1' A D 4 beta 1133 1139 1136 1160 C1' G D 5 beta 1155 1161 1158 1183 C1' U D 6 beta 1178 1184 1181 1203 C1' G D 7 beta 1198 1204 1201 1226 C1' A D 8 beta 1221 1227 1224 1248 C1' A D 9 beta 1243 1249 1246 1270 C1' G D 10 beta 1265 1271 1268 1293 C1' G D 11 alpha 1288 1294 1291 1316 C1' A D 12 alpha 1311 1317 1314 1338 C1' G D 13 beta 1333 1339 1336 1361 C1' G D 14 beta 1356 1362 1359 1384 C1' C D 15 beta 1379 1385 1382 1404 C1' U D 16 beta 1399 1405 1402 1424 C1' C D 17 beta 1419 1425 1422 1444 C1' G D 18 beta 1439 1445 1442 1467 C1' C D 19 beta 1462 1468 1465 1487 C1' G D 20 beta 1482 1488 1485 1510 C1' A D 21 beta 1505 1511 1508 1532 C1' A D 22 beta 1527 1533 1530 1554 C1' C D 23 beta 1549 1555 1552 1574 C1' U D 24 beta 1569 1575 1572 1594 C1' C D 25 beta 1589 1595 1592 1614 C1' G D 26 beta 1609 1615 1612 1637 C1' C D 27 beta 1632 1638 1635 1657 C1' G D 28 beta 1652 1658 1655 1680 C1' A D 29 beta 1675 1681 1678 1702 C1' A D 30 beta 1697 1703 1700 1724 C1' G D 31 beta 1719 1725 1722 1747 C1' C D 32 beta 1742 1748 1745 1767 C1' C D 33 beta 1762 1768 1765 1787 C1' G D 34 beta 1782 1788 1785 1810 C1' A D 35 beta 1805 1811 1808 1832 C1' G D 36 beta 1827 1833 1830 1855 C1' A D 37 beta 1850 1856 1853 1877 C1' A D 38 beta 1872 1878 1875 1899 C1' A D 39 beta 1894 1900 1897 1921 C1' C D 40 beta 1916 1922 1919 1941 C1' U D 41 beta 1936 1942 1939 1961 C1' U D 42 beta 1956 1962 1959 1981 C1' C D 43 alpha 1976 1982 1979 2001 C1' A D 44 beta 1996 2002 1999 2023 C1' C D 45 beta 2018 2024 2021 2043 C1' U D 46 beta 2038 2044 2041 2063 C1' C D 47 beta 2058 2064 2061 2083 C1' C D 48 beta 2078 2084 2081 2103 C1' C D 49 beta 2098 2104 2101 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------- Seq No Atom Residue Deoxyribose Ribose C1' C3' H2'1 H2'2 H2' O2' H2'1 H2'2 H2' O2' --------------------------------------------------------------------------------------------------------------------- 11 C2' G B 1 OK 13 9 12 34 C2' G B 2 OK 36 32 35 57 C2' G B 3 OK 59 55 58 80 C2' A B 4 OK 82 78 81 102 C2' G B 5 OK 104 100 103 125 C2' U B 6 OK 127 123 126 145 C2' G B 7 OK 147 143 146 168 C2' A B 8 OK 170 166 169 190 C2' A B 9 OK 192 188 191 212 C2' G B 10 OK 214 210 213 235 C2' G B 11 OK 237 233 236 258 C2' A B 12 OK 260 256 259 280 C2' G B 13 OK 282 278 281 303 C2' G B 14 OK 305 301 304 326 C2' C B 15 OK 328 324 327 346 C2' U B 16 OK 348 344 347 366 C2' C B 17 OK 368 364 367 386 C2' G B 18 OK 388 384 387 409 C2' C B 19 OK 411 407 410 429 C2' G B 20 OK 431 427 430 452 C2' A B 21 OK 454 450 453 474 C2' A B 22 OK 476 472 475 496 C2' C B 23 OK 498 494 497 516 C2' U B 24 OK 518 514 517 536 C2' C B 25 OK 538 534 537 556 C2' G B 26 OK 558 554 557 579 C2' C B 27 OK 581 577 580 599 C2' G B 28 OK 601 597 600 622 C2' A B 29 OK 624 620 623 644 C2' A B 30 OK 646 642 645 666 C2' G B 31 OK 668 664 667 689 C2' C B 32 OK 691 687 690 709 C2' C B 33 OK 711 707 710 729 C2' G B 34 OK 731 727 730 752 C2' A B 35 OK 754 750 753 774 C2' G B 36 OK 776 772 775 797 C2' A B 37 OK 799 795 798 819 C2' A B 38 OK 821 817 820 841 C2' A B 39 OK 843 839 842 863 C2' C B 40 OK 865 861 864 883 C2' U B 41 OK 885 881 884 903 C2' U B 42 OK 905 901 904 923 C2' C B 43 OK 925 921 924 943 C2' A B 44 OK 945 941 944 965 C2' C B 45 OK 967 963 966 985 C2' U B 46 OK 987 983 986 1005 C2' C B 47 OK 1007 1003 1006 1025 C2' C B 48 OK 1027 1023 1026 1045 C2' C B 49 OK 1047 1043 1046 1067 C2' G D 1 OK 1069 1065 1068 1090 C2' G D 2 OK 1092 1088 1091 1113 C2' G D 3 OK 1115 1111 1114 1136 C2' A D 4 OK 1138 1134 1137 1158 C2' G D 5 OK 1160 1156 1159 1181 C2' U D 6 OK 1183 1179 1182 1201 C2' G D 7 OK 1203 1199 1202 1224 C2' A D 8 OK 1226 1222 1225 1246 C2' A D 9 OK 1248 1244 1247 1268 C2' G D 10 OK 1270 1266 1269 1291 C2' G D 11 OK 1293 1289 1292 1314 C2' A D 12 OK 1316 1312 1315 1336 C2' G D 13 OK 1338 1334 1337 1359 C2' G D 14 OK 1361 1357 1360 1382 C2' C D 15 OK 1384 1380 1383 1402 C2' U D 16 OK 1404 1400 1403 1422 C2' C D 17 OK 1424 1420 1423 1442 C2' G D 18 OK 1444 1440 1443 1465 C2' C D 19 OK 1467 1463 1466 1485 C2' G D 20 OK 1487 1483 1486 1508 C2' A D 21 OK 1510 1506 1509 1530 C2' A D 22 OK 1532 1528 1531 1552 C2' C D 23 OK 1554 1550 1553 1572 C2' U D 24 OK 1574 1570 1573 1592 C2' C D 25 OK 1594 1590 1593 1612 C2' G D 26 OK 1614 1610 1613 1635 C2' C D 27 OK 1637 1633 1636 1655 C2' G D 28 OK 1657 1653 1656 1678 C2' A D 29 OK 1680 1676 1679 1700 C2' A D 30 OK 1702 1698 1701 1722 C2' G D 31 OK 1724 1720 1723 1745 C2' C D 32 OK 1747 1743 1746 1765 C2' C D 33 OK 1767 1763 1766 1785 C2' G D 34 OK 1787 1783 1786 1808 C2' A D 35 OK 1810 1806 1809 1830 C2' G D 36 OK 1832 1828 1831 1853 C2' A D 37 OK 1855 1851 1854 1875 C2' A D 38 OK 1877 1873 1876 1897 C2' A D 39 OK 1899 1895 1898 1919 C2' C D 40 OK 1921 1917 1920 1939 C2' U D 41 OK 1941 1937 1940 1959 C2' U D 42 OK 1961 1957 1960 1979 C2' C D 43 OK 1981 1977 1980 1999 C2' A D 44 OK 2001 1997 2000 2021 C2' C D 45 OK 2023 2019 2022 2041 C2' U D 46 OK 2043 2039 2042 2061 C2' C D 47 OK 2063 2059 2062 2081 C2' C D 48 OK 2083 2079 2082 2101 C2' C D 49 OK 2103 2099 2102 --------------------------------------------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H3' O3' C4' H3' O3' C2' --------------------------------------------------------------------------------- 9 C3' G B 1 OK 7 10 11 32 C3' G B 2 OK 30 33 34 55 C3' G B 3 OK 53 56 57 78 C3' A B 4 OK 76 79 80 100 C3' G B 5 OK 98 101 102 123 C3' U B 6 OK 121 124 125 143 C3' G B 7 OK 141 144 145 166 C3' A B 8 OK 164 167 168 188 C3' A B 9 OK 186 189 190 210 C3' G B 10 OK 208 211 212 233 C3' G B 11 OK 231 234 235 256 C3' A B 12 OK 254 257 258 278 C3' G B 13 OK 276 279 280 301 C3' G B 14 OK 299 302 303 324 C3' C B 15 OK 322 325 326 344 C3' U B 16 OK 342 345 346 364 C3' C B 17 OK 362 365 366 384 C3' G B 18 OK 382 385 386 407 C3' C B 19 OK 405 408 409 427 C3' G B 20 distorted 425 428 429 450 C3' A B 21 OK 448 451 452 472 C3' A B 22 OK 470 473 474 494 C3' C B 23 OK 492 495 496 514 C3' U B 24 OK 512 515 516 534 C3' C B 25 OK 532 535 536 554 C3' G B 26 OK 552 555 556 577 C3' C B 27 OK 575 578 579 597 C3' G B 28 OK 595 598 599 620 C3' A B 29 OK 618 621 622 642 C3' A B 30 OK 640 643 644 664 C3' G B 31 OK 662 665 666 687 C3' C B 32 OK 685 688 689 707 C3' C B 33 OK 705 708 709 727 C3' G B 34 OK 725 728 729 750 C3' A B 35 OK 748 751 752 772 C3' G B 36 OK 770 773 774 795 C3' A B 37 OK 793 796 797 817 C3' A B 38 OK 815 818 819 839 C3' A B 39 OK 837 840 841 861 C3' C B 40 OK 859 862 863 881 C3' U B 41 OK 879 882 883 901 C3' U B 42 OK 899 902 903 921 C3' C B 43 OK 919 922 923 941 C3' A B 44 OK 939 942 943 963 C3' C B 45 OK 961 964 965 983 C3' U B 46 OK 981 984 985 1003 C3' C B 47 OK 1001 1004 1005 1023 C3' C B 48 OK 1021 1024 1025 1043 C3' C B 49 OK 1041 1044 1045 1065 C3' G D 1 OK 1063 1066 1067 1088 C3' G D 2 OK 1086 1089 1090 1111 C3' G D 3 OK 1109 1112 1113 1134 C3' A D 4 OK 1132 1135 1136 1156 C3' G D 5 OK 1154 1157 1158 1179 C3' U D 6 OK 1177 1180 1181 1199 C3' G D 7 OK 1197 1200 1201 1222 C3' A D 8 OK 1220 1223 1224 1244 C3' A D 9 OK 1242 1245 1246 1266 C3' G D 10 OK 1264 1267 1268 1289 C3' G D 11 distorted 1287 1290 1291 1312 C3' A D 12 distorted 1310 1313 1314 1334 C3' G D 13 OK 1332 1335 1336 1357 C3' G D 14 OK 1355 1358 1359 1380 C3' C D 15 OK 1378 1381 1382 1400 C3' U D 16 OK 1398 1401 1402 1420 C3' C D 17 OK 1418 1421 1422 1440 C3' G D 18 OK 1438 1441 1442 1463 C3' C D 19 OK 1461 1464 1465 1483 C3' G D 20 OK 1481 1484 1485 1506 C3' A D 21 OK 1504 1507 1508 1528 C3' A D 22 OK 1526 1529 1530 1550 C3' C D 23 OK 1548 1551 1552 1570 C3' U D 24 OK 1568 1571 1572 1590 C3' C D 25 OK 1588 1591 1592 1610 C3' G D 26 OK 1608 1611 1612 1633 C3' C D 27 OK 1631 1634 1635 1653 C3' G D 28 OK 1651 1654 1655 1676 C3' A D 29 OK 1674 1677 1678 1698 C3' A D 30 OK 1696 1699 1700 1720 C3' G D 31 OK 1718 1721 1722 1743 C3' C D 32 OK 1741 1744 1745 1763 C3' C D 33 OK 1761 1764 1765 1783 C3' G D 34 OK 1781 1784 1785 1806 C3' A D 35 OK 1804 1807 1808 1828 C3' G D 36 OK 1826 1829 1830 1851 C3' A D 37 OK 1849 1852 1853 1873 C3' A D 38 OK 1871 1874 1875 1895 C3' A D 39 OK 1893 1896 1897 1917 C3' C D 40 OK 1915 1918 1919 1937 C3' U D 41 OK 1935 1938 1939 1957 C3' U D 42 OK 1955 1958 1959 1977 C3' C D 43 distorted 1975 1978 1979 1997 C3' A D 44 OK 1995 1998 1999 2019 C3' C D 45 OK 2017 2020 2021 2039 C3' U D 46 OK 2037 2040 2041 2059 C3' C D 47 OK 2057 2060 2061 2079 C3' C D 48 OK 2077 2080 2081 2099 C3' C D 49 OK 2097 2100 2101 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H4' C5' C3' H4' C5' O4' --------------------------------------------------------------------------------- 7 C4' G B 1 OK 9 6 8 30 C4' G B 2 OK 32 29 31 53 C4' G B 3 OK 55 52 54 76 C4' A B 4 OK 78 75 77 98 C4' G B 5 OK 100 97 99 121 C4' U B 6 OK 123 120 122 141 C4' G B 7 OK 143 140 142 164 C4' A B 8 OK 166 163 165 186 C4' A B 9 OK 188 185 187 208 C4' G B 10 OK 210 207 209 231 C4' G B 11 OK 233 230 232 254 C4' A B 12 OK 256 253 255 276 C4' G B 13 OK 278 275 277 299 C4' G B 14 OK 301 298 300 322 C4' C B 15 OK 324 321 323 342 C4' U B 16 OK 344 341 343 362 C4' C B 17 OK 364 361 363 382 C4' G B 18 OK 384 381 383 405 C4' C B 19 OK 407 404 406 425 C4' G B 20 distorted 427 424 426 448 C4' A B 21 OK 450 447 449 470 C4' A B 22 OK 472 469 471 492 C4' C B 23 OK 494 491 493 512 C4' U B 24 OK 514 511 513 532 C4' C B 25 OK 534 531 533 552 C4' G B 26 OK 554 551 553 575 C4' C B 27 OK 577 574 576 595 C4' G B 28 OK 597 594 596 618 C4' A B 29 OK 620 617 619 640 C4' A B 30 OK 642 639 641 662 C4' G B 31 OK 664 661 663 685 C4' C B 32 OK 687 684 686 705 C4' C B 33 OK 707 704 706 725 C4' G B 34 OK 727 724 726 748 C4' A B 35 OK 750 747 749 770 C4' G B 36 OK 772 769 771 793 C4' A B 37 OK 795 792 794 815 C4' A B 38 OK 817 814 816 837 C4' A B 39 OK 839 836 838 859 C4' C B 40 OK 861 858 860 879 C4' U B 41 OK 881 878 880 899 C4' U B 42 OK 901 898 900 919 C4' C B 43 OK 921 918 920 939 C4' A B 44 OK 941 938 940 961 C4' C B 45 OK 963 960 962 981 C4' U B 46 OK 983 980 982 1001 C4' C B 47 OK 1003 1000 1002 1021 C4' C B 48 OK 1023 1020 1022 1041 C4' C B 49 OK 1043 1040 1042 1063 C4' G D 1 OK 1065 1062 1064 1086 C4' G D 2 OK 1088 1085 1087 1109 C4' G D 3 OK 1111 1108 1110 1132 C4' A D 4 OK 1134 1131 1133 1154 C4' G D 5 OK 1156 1153 1155 1177 C4' U D 6 OK 1179 1176 1178 1197 C4' G D 7 OK 1199 1196 1198 1220 C4' A D 8 OK 1222 1219 1221 1242 C4' A D 9 OK 1244 1241 1243 1264 C4' G D 10 OK 1266 1263 1265 1287 C4' G D 11 distorted 1289 1286 1288 1310 C4' A D 12 distorted 1312 1309 1311 1332 C4' G D 13 OK 1334 1331 1333 1355 C4' G D 14 OK 1357 1354 1356 1378 C4' C D 15 OK 1380 1377 1379 1398 C4' U D 16 OK 1400 1397 1399 1418 C4' C D 17 OK 1420 1417 1419 1438 C4' G D 18 OK 1440 1437 1439 1461 C4' C D 19 OK 1463 1460 1462 1481 C4' G D 20 OK 1483 1480 1482 1504 C4' A D 21 OK 1506 1503 1505 1526 C4' A D 22 OK 1528 1525 1527 1548 C4' C D 23 OK 1550 1547 1549 1568 C4' U D 24 OK 1570 1567 1569 1588 C4' C D 25 OK 1590 1587 1589 1608 C4' G D 26 OK 1610 1607 1609 1631 C4' C D 27 OK 1633 1630 1632 1651 C4' G D 28 OK 1653 1650 1652 1674 C4' A D 29 OK 1676 1673 1675 1696 C4' A D 30 OK 1698 1695 1697 1718 C4' G D 31 OK 1720 1717 1719 1741 C4' C D 32 OK 1743 1740 1742 1761 C4' C D 33 OK 1763 1760 1762 1781 C4' G D 34 OK 1783 1780 1782 1804 C4' A D 35 OK 1806 1803 1805 1826 C4' G D 36 OK 1828 1825 1827 1849 C4' A D 37 OK 1851 1848 1850 1871 C4' A D 38 OK 1873 1870 1872 1893 C4' A D 39 OK 1895 1892 1894 1915 C4' C D 40 OK 1917 1914 1916 1935 C4' U D 41 OK 1937 1934 1936 1955 C4' U D 42 OK 1957 1954 1956 1975 C4' C D 43 distorted 1977 1974 1976 1995 C4' A D 44 OK 1997 1994 1996 2017 C4' C D 45 OK 2019 2016 2018 2037 C4' U D 46 OK 2039 2036 2038 2057 C4' C D 47 OK 2059 2056 2058 2077 C4' C D 48 OK 2079 2076 2078 2097 C4' C D 49 OK 2099 2096 2098 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue H5'1 H5'2 O5' H5'1 H5'2 C4' --------------------------------------------------------------------------------- 6 C5' G B 1 5 7 29 C5' G B 2 28 30 52 C5' G B 3 51 53 75 C5' A B 4 74 76 97 C5' G B 5 96 98 120 C5' U B 6 119 121 140 C5' G B 7 139 141 163 C5' A B 8 162 164 185 C5' A B 9 184 186 207 C5' G B 10 206 208 230 C5' G B 11 229 231 253 C5' A B 12 252 254 275 C5' G B 13 274 276 298 C5' G B 14 297 299 321 C5' C B 15 320 322 341 C5' U B 16 340 342 361 C5' C B 17 360 362 381 C5' G B 18 380 382 404 C5' C B 19 403 405 424 C5' G B 20 423 425 447 C5' A B 21 446 448 469 C5' A B 22 468 470 491 C5' C B 23 490 492 511 C5' U B 24 510 512 531 C5' C B 25 530 532 551 C5' G B 26 550 552 574 C5' C B 27 573 575 594 C5' G B 28 593 595 617 C5' A B 29 616 618 639 C5' A B 30 638 640 661 C5' G B 31 660 662 684 C5' C B 32 683 685 704 C5' C B 33 703 705 724 C5' G B 34 723 725 747 C5' A B 35 746 748 769 C5' G B 36 768 770 792 C5' A B 37 791 793 814 C5' A B 38 813 815 836 C5' A B 39 835 837 858 C5' C B 40 857 859 878 C5' U B 41 877 879 898 C5' U B 42 897 899 918 C5' C B 43 917 919 938 C5' A B 44 937 939 960 C5' C B 45 959 961 980 C5' U B 46 979 981 1000 C5' C B 47 999 1001 1020 C5' C B 48 1019 1021 1040 C5' C B 49 1039 1041 1062 C5' G D 1 1061 1063 1085 C5' G D 2 1084 1086 1108 C5' G D 3 1107 1109 1131 C5' A D 4 1130 1132 1153 C5' G D 5 1152 1154 1176 C5' U D 6 1175 1177 1196 C5' G D 7 1195 1197 1219 C5' A D 8 1218 1220 1241 C5' A D 9 1240 1242 1263 C5' G D 10 1262 1264 1286 C5' G D 11 1285 1287 1309 C5' A D 12 1308 1310 1331 C5' G D 13 1330 1332 1354 C5' G D 14 1353 1355 1377 C5' C D 15 1376 1378 1397 C5' U D 16 1396 1398 1417 C5' C D 17 1416 1418 1437 C5' G D 18 1436 1438 1460 C5' C D 19 1459 1461 1480 C5' G D 20 1479 1481 1503 C5' A D 21 1502 1504 1525 C5' A D 22 1524 1526 1547 C5' C D 23 1546 1548 1567 C5' U D 24 1566 1568 1587 C5' C D 25 1586 1588 1607 C5' G D 26 1606 1608 1630 C5' C D 27 1629 1631 1650 C5' G D 28 1649 1651 1673 C5' A D 29 1672 1674 1695 C5' A D 30 1694 1696 1717 C5' G D 31 1716 1718 1740 C5' C D 32 1739 1741 1760 C5' C D 33 1759 1761 1780 C5' G D 34 1779 1781 1803 C5' A D 35 1802 1804 1825 C5' G D 36 1824 1826 1848 C5' A D 37 1847 1849 1870 C5' A D 38 1869 1871 1892 C5' A D 39 1891 1893 1914 C5' C D 40 1913 1915 1934 C5' U D 41 1933 1935 1954 C5' U D 42 1953 1955 1974 C5' C D 43 1973 1975 1994 C5' A D 44 1993 1995 2016 C5' C D 45 2015 2017 2036 C5' U D 46 2035 2037 2056 C5' C D 47 2055 2057 2076 C5' C D 48 2075 2077 2096 C5' C D 49 2095 2097 --------------------------------------------------------------------------------- --------------------------------------------------------------------------------- Seq No Atom Residue O1P O2P O3' O1P O2P O5' --------------------------------------------------------------------------------- 2 P G B 1 OK OK 3 4 5 25 P G B 2 distorted distorted 10 26 27 28 48 P G B 3 distorted distorted 33 49 50 51 71 P A B 4 distorted distorted 56 72 73 74 93 P G B 5 distorted distorted 79 94 95 96 116 P U B 6 distorted distorted 101 117 118 119 136 P G B 7 distorted distorted 124 137 138 139 159 P A B 8 distorted distorted 144 160 161 162 181 P A B 9 distorted distorted 167 182 183 184 203 P G B 10 distorted distorted 189 204 205 206 226 P G B 11 distorted distorted 211 227 228 229 249 P A B 12 distorted distorted 234 250 251 252 271 P G B 13 distorted distorted 257 272 273 274 294 P G B 14 distorted distorted 279 295 296 297 317 P C B 15 distorted distorted 302 318 319 320 337 P U B 16 distorted distorted 325 338 339 340 357 P C B 17 distorted distorted 345 358 359 360 377 P G B 18 distorted distorted 365 378 379 380 400 P C B 19 distorted distorted 385 401 402 403 420 P G B 20 distorted distorted 408 421 422 423 443 P A B 21 distorted distorted 428 444 445 446 465 P A B 22 distorted distorted 451 466 467 468 487 P C B 23 distorted distorted 473 488 489 490 507 P U B 24 distorted distorted 495 508 509 510 527 P C B 25 distorted distorted 515 528 529 530 547 P G B 26 distorted distorted 535 548 549 550 570 P C B 27 distorted distorted 555 571 572 573 590 P G B 28 distorted distorted 578 591 592 593 613 P A B 29 distorted distorted 598 614 615 616 635 P A B 30 distorted distorted 621 636 637 638 657 P G B 31 distorted distorted 643 658 659 660 680 P C B 32 distorted distorted 665 681 682 683 700 P C B 33 distorted distorted 688 701 702 703 720 P G B 34 distorted distorted 708 721 722 723 743 P A B 35 distorted distorted 728 744 745 746 765 P G B 36 distorted distorted 751 766 767 768 788 P A B 37 distorted distorted 773 789 790 791 810 P A B 38 distorted distorted 796 811 812 813 832 P A B 39 distorted distorted 818 833 834 835 854 P C B 40 distorted distorted 840 855 856 857 874 P U B 41 distorted distorted 862 875 876 877 894 P U B 42 distorted distorted 882 895 896 897 914 P C B 43 distorted distorted 902 915 916 917 934 P A B 44 distorted distorted 922 935 936 937 956 P C B 45 distorted distorted 942 957 958 959 976 P U B 46 distorted distorted 964 977 978 979 996 P C B 47 distorted distorted 984 997 998 999 1016 P C B 48 distorted distorted 1004 1017 1018 1019 1036 P C B 49 distorted distorted 1024 1037 1038 1039 1058 P G D 1 OK OK 1059 1060 1061 1081 P G D 2 distorted distorted 1066 1082 1083 1084 1104 P G D 3 distorted distorted 1089 1105 1106 1107 1127 P A D 4 distorted distorted 1112 1128 1129 1130 1149 P G D 5 distorted distorted 1135 1150 1151 1152 1172 P U D 6 distorted distorted 1157 1173 1174 1175 1192 P G D 7 distorted distorted 1180 1193 1194 1195 1215 P A D 8 distorted distorted 1200 1216 1217 1218 1237 P A D 9 distorted distorted 1223 1238 1239 1240 1259 P G D 10 distorted distorted 1245 1260 1261 1262 1282 P G D 11 distorted distorted 1267 1283 1284 1285 1305 P A D 12 distorted distorted 1290 1306 1307 1308 1327 P G D 13 distorted distorted 1313 1328 1329 1330 1350 P G D 14 distorted distorted 1335 1351 1352 1353 1373 P C D 15 distorted distorted 1358 1374 1375 1376 1393 P U D 16 distorted distorted 1381 1394 1395 1396 1413 P C D 17 distorted distorted 1401 1414 1415 1416 1433 P G D 18 distorted distorted 1421 1434 1435 1436 1456 P C D 19 distorted distorted 1441 1457 1458 1459 1476 P G D 20 distorted distorted 1464 1477 1478 1479 1499 P A D 21 distorted distorted 1484 1500 1501 1502 1521 P A D 22 distorted distorted 1507 1522 1523 1524 1543 P C D 23 distorted distorted 1529 1544 1545 1546 1563 P U D 24 distorted distorted 1551 1564 1565 1566 1583 P C D 25 distorted distorted 1571 1584 1585 1586 1603 P G D 26 distorted distorted 1591 1604 1605 1606 1626 P C D 27 distorted distorted 1611 1627 1628 1629 1646 P G D 28 distorted distorted 1634 1647 1648 1649 1669 P A D 29 distorted distorted 1654 1670 1671 1672 1691 P A D 30 distorted distorted 1677 1692 1693 1694 1713 P G D 31 distorted distorted 1699 1714 1715 1716 1736 P C D 32 distorted distorted 1721 1737 1738 1739 1756 P C D 33 distorted distorted 1744 1757 1758 1759 1776 P G D 34 distorted distorted 1764 1777 1778 1779 1799 P A D 35 distorted distorted 1784 1800 1801 1802 1821 P G D 36 distorted distorted 1807 1822 1823 1824 1844 P A D 37 distorted distorted 1829 1845 1846 1847 1866 P A D 38 distorted distorted 1852 1867 1868 1869 1888 P A D 39 distorted distorted 1874 1889 1890 1891 1910 P C D 40 distorted distorted 1896 1911 1912 1913 1930 P U D 41 distorted distorted 1918 1931 1932 1933 1950 P U D 42 distorted distorted 1938 1951 1952 1953 1970 P C D 43 distorted distorted 1958 1971 1972 1973 1990 P A D 44 distorted distorted 1978 1991 1992 1993 2012 P C D 45 distorted distorted 1998 2013 2014 2015 2032 P U D 46 distorted distorted 2020 2033 2034 2035 2052 P C D 47 distorted distorted 2040 2053 2054 2055 2072 P C D 48 distorted distorted 2060 2073 2074 2075 2092 P C D 49 distorted distorted 2080 2093 2094 2095 ---------------------------------------------------------------------------------