HEADER METAL BINDING PROTEIN 12-FEB-19 6NYT TITLE MUNC13-1 C2B-DOMAIN, CALCIUM BOUND COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN UNC-13 HOMOLOG A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2B; COMPND 5 SYNONYM: MUNC13-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: UNC13A, UNC13H1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-KT KEYWDS CALCIUM BINDING PROTEIN, PHOSPHOLIPID BINDING PROTEIN, METAL BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,J.RIZO,M.MACHIUS,J.LU REVDAT 2 18-DEC-19 6NYT 1 REMARK REVDAT 1 20-FEB-19 6NYT 0 SPRSDE 20-FEB-19 6NYT 3KWU JRNL AUTH O.H.SHIN,J.LU,J.S.RHEE,D.R.TOMCHICK,Z.P.PANG,S.M.WOJCIK, JRNL AUTH 2 M.CAMACHO-PEREZ,N.BROSE,M.MACHIUS,J.RIZO,C.ROSENMUND, JRNL AUTH 3 T.C.SUDHOF JRNL TITL MUNC13 C2B DOMAIN IS AN ACTIVITY-DEPENDENT CA2+ REGULATOR OF JRNL TITL 2 SYNAPTIC EXOCYTOSIS. JRNL REF NAT. STRUCT. MOL. BIOL. V. 17 280 2010 JRNL REFN ESSN 1545-9985 JRNL PMID 20154707 JRNL DOI 10.1038/NSMB.1758 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.J.JUNGE,J.S.RHEE,O.JAHN,F.VAROQUEAUX,J.SPEISS,M.N.WAXHAM, REMARK 1 AUTH 2 C.ROSENMUND,N.BROSE REMARK 1 TITL CALMODULIN AND MUNC13 FORM A CA2+ SENSOR/EFFECTOR COMPLEX REMARK 1 TITL 2 THAT CONTROLS SHORT-TERM SYNAPTIC PLASTICITY. REMARK 1 REF CELL(CAMBRIDGE,MASS.) V. 118 389 2004 REMARK 1 REFN ISSN 0092-8674 REMARK 1 PMID 15294163 REMARK 1 DOI 10.1016/J.CELL.2004.06.029 REMARK 1 REFERENCE 2 REMARK 1 AUTH I.AUGUSTIN,C.ROSENMUND,T.C.SUDHOF,N.BROSE REMARK 1 TITL MUNC-13 IS ESSENTIAL FOR FUSION COMPETENCE OF GLUTAMATERGIC REMARK 1 TITL 2 SYNAPTIC VESICLES. REMARK 1 REF NATURE V. 400 457 1999 REMARK 1 REFN ISSN 0028-0836 REMARK 1 PMID 10440375 REMARK 1 DOI 10.1038/22768 REMARK 1 REFERENCE 3 REMARK 1 AUTH N.BROSE,K.HOFMANN,Y.HATA,T.C.SUDHOF REMARK 1 TITL MAMMALIAN HOMOLOGUES OF C. ELEGANS UNC-13 GENE DEFINE NOVEL REMARK 1 TITL 2 FAMILY OF C2-DOMAIN PROTEINS. REMARK 1 REF J. BIOL. CHEM. V. 270 25273 1995 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 7559667 REMARK 2 REMARK 2 RESOLUTION. 1.37 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.14_3260: ??? REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.37 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.148 REMARK 3 FREE R VALUE : 0.169 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.860 REMARK 3 FREE R VALUE TEST SET COUNT : 1546 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.0111 - 3.0437 1.00 2989 137 0.1662 0.1986 REMARK 3 2 3.0437 - 2.4162 1.00 2823 139 0.1741 0.1778 REMARK 3 3 2.4162 - 2.1109 1.00 2741 173 0.1376 0.1319 REMARK 3 4 2.1109 - 1.9179 1.00 2747 150 0.1281 0.1470 REMARK 3 5 1.9179 - 1.7804 1.00 2749 131 0.1231 0.1588 REMARK 3 6 1.7804 - 1.6755 1.00 2709 148 0.1242 0.1526 REMARK 3 7 1.6755 - 1.5916 1.00 2731 132 0.1180 0.1623 REMARK 3 8 1.5916 - 1.5223 1.00 2741 128 0.1236 0.1513 REMARK 3 9 1.5223 - 1.4637 1.00 2705 134 0.1224 0.1620 REMARK 3 10 1.4637 - 1.4132 1.00 2715 140 0.1421 0.2228 REMARK 3 11 1.4132 - 1.3690 0.98 2612 134 0.1739 0.1979 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.100 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 6NYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-FEB-19. REMARK 100 THE DEPOSITION ID IS D_1000239675. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-JUN-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97895 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31875 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.369 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 11.60 REMARK 200 R MERGE (I) : 0.05500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.37 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.39 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.90 REMARK 200 R MERGE FOR SHELL (I) : 0.46400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 3KWT REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG-MME 2000, 0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.8, 0.1 M NACL, 0.1 MM CACL2, 0.5 MM TCEP, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.99150 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 28.47150 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 67.48725 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 28.47150 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 22.49575 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 28.47150 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 67.48725 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 28.47150 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 28.47150 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 22.49575 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.99150 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1146 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 675 REMARK 465 VAL A 676 REMARK 465 LYS A 677 REMARK 465 GLN A 678 REMARK 465 SER A 679 REMARK 465 VAL A 680 REMARK 465 LEU A 681 REMARK 465 ASP A 682 REMARK 465 GLY A 683 REMARK 465 THR A 684 REMARK 465 SER A 685 REMARK 465 LYS A 686 REMARK 465 LYS A 820 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 773 N - CA - CB ANGL. DEV. = 13.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 749 95.90 -68.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 902 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 704 O REMARK 620 2 ASP A 705 OD1 82.4 REMARK 620 3 ASP A 757 OD2 89.7 80.7 REMARK 620 4 ASP A 759 OD1 152.8 70.9 81.1 REMARK 620 5 ASP A 759 OD2 155.3 119.5 104.4 51.5 REMARK 620 6 ASP A 776 OD2 83.9 165.6 94.9 122.2 74.9 REMARK 620 7 HOH A1116 O 84.2 87.0 167.0 99.2 85.5 95.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 901 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 705 OD1 REMARK 620 2 ASP A 705 OD2 52.1 REMARK 620 3 ASP A 711 OD2 128.4 77.3 REMARK 620 4 ASP A 757 OD1 92.0 90.2 98.3 REMARK 620 5 GLU A 758 O 149.1 158.7 81.8 88.9 REMARK 620 6 ASP A 759 OD1 70.1 122.2 157.6 92.9 79.1 REMARK 620 7 HOH A1114 O 84.4 88.2 84.5 176.3 93.9 85.2 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 905 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3KWU RELATED DB: PDB REMARK 900 ORIGINAL DEPOSITION HAD THE WRONG SEQUENCE AT POSITION 756. WE HAVE REMARK 900 CORRECTED THE SEQUENCE AND RE-REFINED THE STRUCTURE. DBREF 6NYT A 675 820 UNP Q62768 UN13A_RAT 675 820 SEQADV 6NYT GLU A -2 UNP Q62768 EXPRESSION TAG SEQADV 6NYT PHE A -1 UNP Q62768 EXPRESSION TAG SEQADV 6NYT TRP A 756 UNP Q62768 LEU 756 ENGINEERED MUTATION SEQRES 1 A 148 GLU PHE ALA VAL LYS GLN SER VAL LEU ASP GLY THR SER SEQRES 2 A 148 LYS TRP SER ALA LYS ILE SER ILE THR VAL VAL CYS ALA SEQRES 3 A 148 GLN GLY LEU GLN ALA LYS ASP LYS THR GLY SER SER ASP SEQRES 4 A 148 PRO TYR VAL THR VAL GLN VAL GLY LYS THR LYS LYS ARG SEQRES 5 A 148 THR LYS THR ILE TYR GLY ASN LEU ASN PRO VAL TRP GLU SEQRES 6 A 148 GLU ASN PHE HIS PHE GLU CYS HIS ASN SER SER ASP ARG SEQRES 7 A 148 ILE LYS VAL ARG VAL TRP ASP GLU ASP ASP ASP ILE LYS SEQRES 8 A 148 SER ARG VAL LYS GLN ARG PHE LYS ARG GLU SER ASP ASP SEQRES 9 A 148 PHE LEU GLY GLN THR ILE ILE GLU VAL ARG THR LEU SER SEQRES 10 A 148 GLY GLU MET ASP VAL TRP TYR ASN LEU ASP LYS ARG THR SEQRES 11 A 148 ASP LYS SER ALA VAL SER GLY ALA ILE ARG LEU HIS ILE SEQRES 12 A 148 SER VAL GLU ILE LYS HET CA A 901 1 HET CA A 902 1 HET CL A 903 1 HET CL A 904 1 HET GOL A 905 14 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CA 2(CA 2+) FORMUL 4 CL 2(CL 1-) FORMUL 6 GOL C3 H8 O3 FORMUL 7 HOH *146(H2 O) HELIX 1 AA1 ASP A 761 GLN A 768 1 8 HELIX 2 AA2 ARG A 786 LEU A 788 5 3 SHEET 1 AA1 4 VAL A 735 CYS A 744 0 SHEET 2 AA1 4 ALA A 689 GLN A 699 -1 N ALA A 689 O CYS A 744 SHEET 3 AA1 4 ALA A 810 GLU A 818 -1 O SER A 816 N SER A 692 SHEET 4 AA1 4 GLU A 791 ASN A 797 -1 N TYR A 796 O ILE A 811 SHEET 1 AA2 4 THR A 721 ARG A 724 0 SHEET 2 AA2 4 PRO A 712 VAL A 718 -1 N VAL A 716 O LYS A 723 SHEET 3 AA2 4 ARG A 750 ASP A 757 -1 O LYS A 752 N GLN A 717 SHEET 4 AA2 4 ASP A 776 GLU A 784 -1 O LEU A 778 N VAL A 755 LINK O LYS A 704 CA CA A 902 1555 1555 2.37 LINK OD1 ASP A 705 CA CA A 901 1555 1555 2.62 LINK OD1 ASP A 705 CA CA A 902 1555 1555 2.38 LINK OD2 ASP A 705 CA CA A 901 1555 1555 2.37 LINK OD2 ASP A 711 CA CA A 901 1555 1555 2.37 LINK OD1 ASP A 757 CA CA A 901 1555 1555 2.36 LINK OD2 ASP A 757 CA CA A 902 1555 1555 2.29 LINK O GLU A 758 CA CA A 901 1555 1555 2.35 LINK OD1 ASP A 759 CA CA A 901 1555 1555 2.34 LINK OD1 ASP A 759 CA CA A 902 1555 1555 2.54 LINK OD2 ASP A 759 CA CA A 902 1555 1555 2.44 LINK OD2 ASP A 776 CA CA A 902 1555 1555 2.30 LINK CA CA A 901 O HOH A1114 1555 1555 2.35 LINK CA CA A 902 O HOH A1116 1555 1555 2.39 SITE 1 AC1 6 ASP A 705 ASP A 711 ASP A 757 GLU A 758 SITE 2 AC1 6 ASP A 759 HOH A1114 SITE 1 AC2 6 LYS A 704 ASP A 705 ASP A 757 ASP A 759 SITE 2 AC2 6 ASP A 776 HOH A1116 SITE 1 AC3 4 LYS A 704 SER A 805 ALA A 806 HOH A1029 SITE 1 AC4 3 LYS A 723 PHE A 740 HIS A 741 SITE 1 AC5 9 GLU A -2 TYR A 713 TRP A 756 GLU A 773 SITE 2 AC5 9 SER A 774 ASP A 775 HOH A1006 HOH A1048 SITE 3 AC5 9 HOH A1077 CRYST1 56.943 56.943 89.983 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017561 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017561 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011113 0.00000 MASTER 360 0 5 2 8 0 9 6 0 0 0 12 END