HEADER ZINC FINGER DNA BINDING DOMAIN 22-AUG-91 5ZNF TITLE ALTERNATING ZINC FINGERS IN THE HUMAN MALE ASSOCIATED TITLE 2 PROTEIN ZFY: 2D NMR STRUCTURE OF AN EVEN FINGER AND TITLE 3 IMPLICATIONS FOR "JUMPING-LINKER" DNA RECOGNITION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ZINC FINGER; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606 KEYWDS ZINC FINGER DNA BINDING DOMAIN EXPDTA SOLUTION NMR NUMMDL 13 AUTHOR M.KOCHOYAN,H.T.KEUTMANN,M.A.WEISS REVDAT 2 24-FEB-09 5ZNF 1 VERSN REVDAT 1 31-JAN-94 5ZNF 0 JRNL AUTH M.KOCHOYAN,T.F.HAVEL,D.T.NGUYEN,C.E.DAHL, JRNL AUTH 2 H.T.KEUTMANN,M.A.WEISS JRNL TITL ALTERNATING ZINC FINGERS IN THE HUMAN MALE JRNL TITL 2 ASSOCIATED PROTEIN ZFY: 2D NMR STRUCTURE OF AN JRNL TITL 3 EVEN FINGER AND IMPLICATIONS FOR "JUMPING-LINKER" JRNL TITL 4 DNA RECOGNITION. JRNL REF BIOCHEMISTRY V. 30 3371 1991 JRNL REFN ISSN 0006-2960 JRNL PMID 1849423 JRNL DOI 10.1021/BI00228A004 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.KOCHOYAN,H.T.KEUTMANN,M.A.WEISS REMARK 1 TITL ALTERNATING ZINC FINGERS IN THE HUMAN MALE REMARK 1 TITL 2 ASSOCIATED PROTEIN ZFY: REFINEMENT OF THE NMR REMARK 1 TITL 3 STRUCTURE OF AN EVEN FINGER BY SELECTIVE DEUTERIUM REMARK 1 TITL 4 LABELING AND IMPLICATIONS FOR DNA RECOGNITION REMARK 1 REF BIOCHEMISTRY V. 30 7063 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH M.KOCHOYAN,H.T.KEUTMANN,M.A.WEISS REMARK 1 TITL ARCHITECTURAL RULES OF THE ZINC-FINGER MOTIF: REMARK 1 TITL 2 COMPARATIVE TWO-DIMENSIONAL NMR STUDIES OF NATIVE REMARK 1 TITL 3 AND "AROMATIC-SWAP" DOMAINS DEFINE A "WEAKLY POLAR REMARK 1 TITL 4 SWITCH" REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 88 8455 1991 REMARK 1 REFN ISSN 0027-8424 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : DGII, X-PLOR REMARK 3 AUTHORS : HAVEL (DGII), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5ZNF COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 13 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 HIS A 21 NE2 HIS A 21 CD2 -0.067 REMARK 500 1 HIS A 26 NE2 HIS A 26 CD2 -0.067 REMARK 500 2 HIS A 21 NE2 HIS A 21 CD2 -0.073 REMARK 500 3 HIS A 21 NE2 HIS A 21 CD2 -0.068 REMARK 500 5 HIS A 21 NE2 HIS A 21 CD2 -0.069 REMARK 500 6 HIS A 21 NE2 HIS A 21 CD2 -0.070 REMARK 500 7 HIS A 26 NE2 HIS A 26 CD2 -0.068 REMARK 500 8 HIS A 21 NE2 HIS A 21 CD2 -0.069 REMARK 500 9 HIS A 21 NE2 HIS A 21 CD2 -0.069 REMARK 500 10 HIS A 21 NE2 HIS A 21 CD2 -0.068 REMARK 500 11 HIS A 21 NE2 HIS A 21 CD2 -0.068 REMARK 500 12 HIS A 21 NE2 HIS A 21 CD2 -0.068 REMARK 500 13 HIS A 21 NE2 HIS A 21 CD2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 7 CYS A 5 CA - CB - SG ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 6 44.97 -109.36 REMARK 500 1 TYR A 7 -55.00 -131.33 REMARK 500 1 CYS A 8 -147.81 -123.40 REMARK 500 1 SER A 15 -38.56 -34.73 REMARK 500 1 HIS A 26 -87.30 -117.26 REMARK 500 1 SER A 27 73.19 -19.36 REMARK 500 1 LYS A 28 99.78 20.41 REMARK 500 2 CYS A 8 -158.40 -115.48 REMARK 500 2 ASP A 14 -59.03 -130.05 REMARK 500 2 SER A 15 -56.43 123.70 REMARK 500 2 SER A 27 69.93 29.51 REMARK 500 2 LYS A 28 56.18 9.83 REMARK 500 2 GLU A 29 -68.06 89.62 REMARK 500 3 TYR A 7 -49.19 -138.97 REMARK 500 3 CYS A 8 -146.19 -129.56 REMARK 500 3 SER A 15 -49.55 128.86 REMARK 500 3 LYS A 28 35.96 36.54 REMARK 500 4 TYR A 7 -56.18 -148.12 REMARK 500 4 CYS A 8 -144.52 -131.90 REMARK 500 4 ASP A 14 -60.80 -133.59 REMARK 500 4 SER A 15 -49.07 113.91 REMARK 500 4 HIS A 26 59.10 -110.42 REMARK 500 4 SER A 27 -71.96 -119.96 REMARK 500 4 LYS A 28 -54.87 85.88 REMARK 500 5 TYR A 7 -60.45 -127.95 REMARK 500 5 CYS A 8 -157.80 -107.54 REMARK 500 5 GLU A 9 50.77 -112.27 REMARK 500 5 ASP A 14 -64.28 -133.17 REMARK 500 5 SER A 15 -45.52 111.68 REMARK 500 5 HIS A 26 -52.52 -123.48 REMARK 500 5 LYS A 28 -60.11 -140.94 REMARK 500 6 CYS A 8 -143.36 -116.44 REMARK 500 6 ASP A 14 -55.27 -127.68 REMARK 500 6 SER A 15 -57.31 114.28 REMARK 500 6 GLU A 29 -46.57 -131.22 REMARK 500 7 THR A 2 87.97 33.39 REMARK 500 7 CYS A 8 -164.92 -127.02 REMARK 500 7 GLU A 9 50.48 -114.50 REMARK 500 7 LYS A 28 -57.90 -8.74 REMARK 500 8 TYR A 7 -70.37 -128.10 REMARK 500 8 CYS A 8 -143.89 -94.71 REMARK 500 8 ASP A 14 69.30 -115.35 REMARK 500 8 SER A 15 -42.39 -7.76 REMARK 500 8 SER A 27 -74.52 -15.12 REMARK 500 9 TYR A 7 -50.04 -139.04 REMARK 500 9 CYS A 8 -159.81 -123.47 REMARK 500 9 SER A 15 -65.76 125.29 REMARK 500 9 HIS A 26 -91.70 -105.72 REMARK 500 9 SER A 27 60.22 11.75 REMARK 500 10 TYR A 7 -55.35 -133.09 REMARK 500 10 CYS A 8 -152.27 -118.57 REMARK 500 10 ASP A 14 -66.10 -125.39 REMARK 500 10 SER A 15 -59.62 125.64 REMARK 500 10 SER A 27 132.17 -32.57 REMARK 500 10 LYS A 28 -62.90 -130.12 REMARK 500 11 TYR A 7 -61.05 -136.72 REMARK 500 11 CYS A 8 -143.97 -115.95 REMARK 500 11 HIS A 26 59.74 -110.65 REMARK 500 11 SER A 27 167.34 103.82 REMARK 500 11 GLU A 29 -169.37 -116.38 REMARK 500 12 TYR A 7 -62.80 -142.94 REMARK 500 12 CYS A 8 -160.90 -107.87 REMARK 500 12 GLU A 9 54.06 -115.19 REMARK 500 12 ASP A 14 -55.64 -131.95 REMARK 500 12 SER A 15 -54.23 119.21 REMARK 500 12 HIS A 26 -54.22 -123.05 REMARK 500 12 SER A 27 -169.95 -116.94 REMARK 500 13 GLN A 6 44.19 -99.54 REMARK 500 13 TYR A 7 -62.34 -147.72 REMARK 500 13 CYS A 8 -117.77 -115.28 REMARK 500 13 GLU A 9 -58.40 -122.07 REMARK 500 13 TYR A 10 114.78 -7.43 REMARK 500 13 SER A 15 -59.12 -28.25 REMARK 500 13 HIS A 26 57.04 -112.06 REMARK 500 13 SER A 27 78.67 -5.41 REMARK 500 13 LYS A 28 170.63 44.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 11 0.30 SIDE_CHAIN REMARK 500 2 ARG A 11 0.29 SIDE_CHAIN REMARK 500 3 ARG A 11 0.19 SIDE_CHAIN REMARK 500 4 ARG A 11 0.28 SIDE_CHAIN REMARK 500 5 ARG A 11 0.24 SIDE_CHAIN REMARK 500 6 ARG A 11 0.23 SIDE_CHAIN REMARK 500 7 ARG A 11 0.31 SIDE_CHAIN REMARK 500 8 ARG A 11 0.30 SIDE_CHAIN REMARK 500 9 ARG A 11 0.28 SIDE_CHAIN REMARK 500 10 ARG A 11 0.31 SIDE_CHAIN REMARK 500 12 ARG A 11 0.27 SIDE_CHAIN REMARK 500 13 ARG A 11 0.14 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 1 ZN A 31 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 21 NE2 REMARK 620 2 CYS A 5 SG 109.8 REMARK 620 3 HIS A 26 NE2 111.3 105.6 REMARK 620 4 CYS A 8 SG 106.7 112.7 110.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 31 DBREF 5ZNF A 1 29 UNP P08048 ZFY_HUMAN 570 598 SEQADV 5ZNF THR A 2 UNP P08048 PRO 571 CONFLICT SEQRES 1 A 30 LYS THR TYR GLN CYS GLN TYR CYS GLU TYR ARG SER ALA SEQRES 2 A 30 ASP SER SER ASN LEU LYS THR HIS ILE LYS THR LYS HIS SEQRES 3 A 30 SER LYS GLU LYS HET ZN A 31 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ HELIX 1 H1 SER A 15 HIS A 26 1SEE REMARK 4 12 SHEET 1 B1 2 THR A 2 GLN A 6 0 SHEET 2 B1 2 CYS A 8 ALA A 13 -1 N SER A 12 O TYR A 3 LINK ZN ZN A 31 NE2 HIS A 21 1555 1555 1.99 LINK ZN ZN A 31 SG CYS A 5 1555 1555 2.30 LINK ZN ZN A 31 NE2 HIS A 26 1555 1555 1.99 LINK ZN ZN A 31 SG CYS A 8 1555 1555 2.28 SITE 1 AC1 4 CYS A 5 CYS A 8 HIS A 21 HIS A 26 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 248 0 1 1 2 0 1 6 0 0 0 3 END