HEADER TRANSPORT PROTEIN 28-MAR-17 5VB8 TITLE CRYSTAL STRUCTURE OF THE NAVAB VOLTAGE-GATED SODIUM CHANNEL IN AN OPEN TITLE 2 STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ION TRANSPORT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-226; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCOBACTER BUTZLERI; SOURCE 3 ORGANISM_TAXID: 28197; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS KEYWDS VOLTAGE-GATED SODIUM CHANNEL, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.J.LENAEUS,W.A.CATTERALL REVDAT 4 20-NOV-19 5VB8 1 REMARK REVDAT 3 27-SEP-17 5VB8 1 REMARK REVDAT 2 19-APR-17 5VB8 1 JRNL REVDAT 1 05-APR-17 5VB8 0 JRNL AUTH M.J.LENAEUS,T.M.GAMAL EL-DIN,C.ING,K.RAMANADANE,R.POMES, JRNL AUTH 2 N.ZHENG,W.A.CATTERALL JRNL TITL STRUCTURES OF CLOSED AND OPEN STATES OF A VOLTAGE-GATED JRNL TITL 2 SODIUM CHANNEL. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E3051 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28348242 JRNL DOI 10.1073/PNAS.1700761114 REMARK 2 REMARK 2 RESOLUTION. 2.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.11.1_2575: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 16657 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.230 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 853 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7881 - 5.1717 0.90 2725 150 0.2423 0.2732 REMARK 3 2 5.1717 - 4.1083 0.92 2661 144 0.2062 0.2187 REMARK 3 3 4.1083 - 3.5900 0.93 2660 147 0.1959 0.2342 REMARK 3 4 3.5900 - 3.2622 0.93 2656 142 0.2219 0.2381 REMARK 3 5 3.2622 - 3.0286 0.94 2679 141 0.2746 0.3187 REMARK 3 6 3.0286 - 2.8502 0.86 2423 129 0.3037 0.3121 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.390 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1817 REMARK 3 ANGLE : 1.377 2469 REMARK 3 CHIRALITY : 0.058 295 REMARK 3 PLANARITY : 0.008 285 REMARK 3 DIHEDRAL : 13.178 1025 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 999 THROUGH 1011 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.1118 -35.0751 -52.5179 REMARK 3 T TENSOR REMARK 3 T11: 1.4980 T22: 1.5818 REMARK 3 T33: 1.6391 T12: -0.0826 REMARK 3 T13: -0.3356 T23: -0.1696 REMARK 3 L TENSOR REMARK 3 L11: 0.3031 L22: 0.1427 REMARK 3 L33: 0.1553 L12: -0.1462 REMARK 3 L13: -0.0637 L23: -0.0484 REMARK 3 S TENSOR REMARK 3 S11: -0.6868 S12: 2.2622 S13: 0.9094 REMARK 3 S21: -1.4485 S22: 0.6098 S23: 1.7001 REMARK 3 S31: 0.7117 S32: 1.1048 S33: 0.0047 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1012 THROUGH 1070 ) REMARK 3 ORIGIN FOR THE GROUP (A): -33.6727 -36.1920 -71.4969 REMARK 3 T TENSOR REMARK 3 T11: 1.0393 T22: 1.0038 REMARK 3 T33: 1.1714 T12: -0.3268 REMARK 3 T13: -0.1614 T23: -0.2746 REMARK 3 L TENSOR REMARK 3 L11: 2.5511 L22: 2.9148 REMARK 3 L33: 1.4509 L12: -0.0749 REMARK 3 L13: 0.6151 L23: 2.2448 REMARK 3 S TENSOR REMARK 3 S11: -0.4115 S12: 0.2148 S13: 0.6002 REMARK 3 S21: -0.0570 S22: 0.5414 S23: -0.5965 REMARK 3 S31: -0.8715 S32: 1.2384 S33: -0.0010 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1071 THROUGH 1152 ) REMARK 3 ORIGIN FOR THE GROUP (A): -39.9508 -58.2269 -68.5323 REMARK 3 T TENSOR REMARK 3 T11: 0.8496 T22: 0.9727 REMARK 3 T33: 0.8580 T12: -0.0129 REMARK 3 T13: -0.2098 T23: -0.1290 REMARK 3 L TENSOR REMARK 3 L11: 2.5924 L22: 4.0144 REMARK 3 L33: 1.0504 L12: 1.3152 REMARK 3 L13: 0.6480 L23: 0.6326 REMARK 3 S TENSOR REMARK 3 S11: 0.2843 S12: -0.6361 S13: 0.0787 REMARK 3 S21: 1.0383 S22: -0.1201 S23: -0.6743 REMARK 3 S31: 0.1378 S32: -0.0472 S33: -0.0003 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1153 THROUGH 1193 ) REMARK 3 ORIGIN FOR THE GROUP (A): -54.3347 -74.3491 -86.0176 REMARK 3 T TENSOR REMARK 3 T11: 0.6532 T22: 0.5640 REMARK 3 T33: 0.6969 T12: 0.0180 REMARK 3 T13: -0.0351 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 3.6309 L22: 2.0630 REMARK 3 L33: 3.2887 L12: 0.4981 REMARK 3 L13: -0.1151 L23: -0.7876 REMARK 3 S TENSOR REMARK 3 S11: -0.0271 S12: 0.2567 S13: -0.3058 REMARK 3 S21: -0.1650 S22: -0.0991 S23: -0.2333 REMARK 3 S31: 0.0410 S32: 0.2368 S33: 0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 1194 THROUGH 1219 ) REMARK 3 ORIGIN FOR THE GROUP (A): -57.1830 -72.9703 -69.4222 REMARK 3 T TENSOR REMARK 3 T11: 0.9880 T22: 0.7312 REMARK 3 T33: 0.7562 T12: 0.1298 REMARK 3 T13: -0.0849 T23: 0.0411 REMARK 3 L TENSOR REMARK 3 L11: -0.2605 L22: 1.3660 REMARK 3 L33: 2.0287 L12: 0.9193 REMARK 3 L13: -0.5931 L23: -1.5965 REMARK 3 S TENSOR REMARK 3 S11: -0.4045 S12: -0.5305 S13: -0.0703 REMARK 3 S21: 1.5587 S22: 0.3986 S23: 0.5220 REMARK 3 S31: 0.5058 S32: 0.9949 S33: -0.0061 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5VB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAR-17. REMARK 100 THE DEPOSITION ID IS D_1000227156. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAY-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16684 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.850 REMARK 200 RESOLUTION RANGE LOW (A) : 29.530 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.1 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.09700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.90 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3RVY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 81.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 6.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8 M AMMONIUM SULFATE AND 100 MM REMARK 280 SODIUM ACETATE (PH 4.8). 1,2-DIMYRISTOYL-SN-GLYCERO-3- REMARK 280 PHOSPHATIDYLCHOLINE (DMPC):CHAPSO BICELLES (ANATRACE), VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 62.65100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.21200 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 62.65100 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 96.21200 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 62.65100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 96.21200 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 62.65100 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 96.21200 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 62.65100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 96.21200 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 62.65100 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 96.21200 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 62.65100 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 96.21200 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 62.65100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 62.65100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 96.21200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 40900 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -122.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -125.30200 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -125.30200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 -125.30200 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 -125.30200 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 NA NA A1301 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 983 REMARK 465 ASP A 984 REMARK 465 TYR A 985 REMARK 465 LYS A 986 REMARK 465 ASP A 987 REMARK 465 ASP A 988 REMARK 465 ASP A 989 REMARK 465 ASP A 990 REMARK 465 LYS A 991 REMARK 465 GLY A 992 REMARK 465 SER A 993 REMARK 465 LEU A 994 REMARK 465 VAL A 995 REMARK 465 PRO A 996 REMARK 465 ARG A 997 REMARK 465 GLY A 998 REMARK 465 PRO A 1090 REMARK 465 THR A 1091 REMARK 465 SER A 1092 REMARK 465 SER A 1093 REMARK 465 GLY A 1094 REMARK 465 PHE A 1095 REMARK 465 ALA A 1220 REMARK 465 MET A 1221 REMARK 465 ALA A 1222 REMARK 465 ILE A 1223 REMARK 465 LEU A 1224 REMARK 465 ASN A 1225 REMARK 465 GLN A 1226 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 999 OG REMARK 470 HIS A1000 CG ND1 CD2 CE1 NE2 REMARK 470 LEU A1003 CG CD1 CD2 REMARK 470 ARG A1004 CG CD NE CZ NH1 NH2 REMARK 470 THR A1006 OG1 CG2 REMARK 470 ASN A1007 CG OD1 ND2 REMARK 470 PHE A1013 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A1016 CG CD CE NZ REMARK 470 LYS A1035 CG CD CE NZ REMARK 470 GLN A1039 CG CD OE1 NE2 REMARK 470 SER A1040 OG REMARK 470 TYR A1044 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A1047 CG CD1 CD2 REMARK 470 GLN A1050 CG CD OE1 NE2 REMARK 470 TYR A1065 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 ARG A1068 CG CD NE CZ NH1 NH2 REMARK 470 ILE A1069 CG1 CG2 CD1 REMARK 470 LYS A1073 CG CD CE NZ REMARK 470 LEU A1088 CG CD1 CD2 REMARK 470 GLU A1096 CG CD OE1 OE2 REMARK 470 LEU A1098 CG CD1 CD2 REMARK 470 ARG A1099 CG CD NE CZ NH1 NH2 REMARK 470 GLN A1115 CG CD OE1 NE2 REMARK 470 ARG A1117 CG CD NE CZ NH1 NH2 REMARK 470 LYS A1118 CG CD CE NZ REMARK 470 SER A1125 OG REMARK 470 VAL A1218 CG1 CG2 REMARK 470 ASP A1219 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 1008 HG SER A 1011 1.55 REMARK 500 OE2 GLU A 1059 HH22 ARG A 1108 1.57 REMARK 500 O VAL A 1208 H LEU A 1212 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A1068 -128.14 52.95 REMARK 500 PHE A1160 10.76 -147.25 REMARK 500 VAL A1190 -33.39 -131.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PX4 A 1302 REMARK 610 PX4 A 1303 REMARK 610 PX4 A 1304 REMARK 610 PX4 A 1305 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PX4 A 1305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue SO4 A 1306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5VB2 RELATED DB: PDB DBREF 5VB8 A 1001 1226 UNP A8EVM5 A8EVM5_ARCB4 1 226 SEQADV 5VB8 MET A 983 UNP A8EVM5 INITIATING METHIONINE SEQADV 5VB8 ASP A 984 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 TYR A 985 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 LYS A 986 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 ASP A 987 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 ASP A 988 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 ASP A 989 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 ASP A 990 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 LYS A 991 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 GLY A 992 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 SER A 993 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 LEU A 994 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 VAL A 995 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 PRO A 996 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 ARG A 997 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 GLY A 998 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 SER A 999 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 HIS A 1000 UNP A8EVM5 EXPRESSION TAG SEQADV 5VB8 CYS A 1217 UNP A8EVM5 ILE 217 CONFLICT SEQRES 1 A 244 MET ASP TYR LYS ASP ASP ASP ASP LYS GLY SER LEU VAL SEQRES 2 A 244 PRO ARG GLY SER HIS MET TYR LEU ARG ILE THR ASN ILE SEQRES 3 A 244 VAL GLU SER SER PHE PHE THR LYS PHE ILE ILE TYR LEU SEQRES 4 A 244 ILE VAL LEU ASN GLY ILE THR MET GLY LEU GLU THR SER SEQRES 5 A 244 LYS THR PHE MET GLN SER PHE GLY VAL TYR THR THR LEU SEQRES 6 A 244 PHE ASN GLN ILE VAL ILE THR ILE PHE THR ILE GLU ILE SEQRES 7 A 244 ILE LEU ARG ILE TYR VAL HIS ARG ILE SER PHE PHE LYS SEQRES 8 A 244 ASP PRO TRP SER LEU PHE ASP PHE PHE VAL VAL ALA ILE SEQRES 9 A 244 SER LEU VAL PRO THR SER SER GLY PHE GLU ILE LEU ARG SEQRES 10 A 244 VAL LEU ARG VAL LEU ARG LEU PHE ARG LEU VAL THR ALA SEQRES 11 A 244 VAL PRO GLN MET ARG LYS ILE VAL SER ALA LEU ILE SER SEQRES 12 A 244 VAL ILE PRO GLY MET LEU SER VAL ILE ALA LEU MET THR SEQRES 13 A 244 LEU PHE PHE TYR ILE PHE ALA ILE MET ALA THR GLN LEU SEQRES 14 A 244 PHE GLY GLU ARG PHE PRO GLU TRP PHE GLY THR LEU GLY SEQRES 15 A 244 GLU SER PHE TYR THR LEU PHE GLN VAL MET THR LEU GLU SEQRES 16 A 244 SER TRP SER MET GLY ILE VAL ARG PRO LEU MET GLU VAL SEQRES 17 A 244 TYR PRO TYR ALA TRP VAL PHE PHE ILE PRO PHE ILE PHE SEQRES 18 A 244 VAL VAL THR PHE VAL MET ILE ASN LEU VAL VAL ALA ILE SEQRES 19 A 244 CYS VAL ASP ALA MET ALA ILE LEU ASN GLN HET NA A1301 1 HET PX4 A1302 52 HET PX4 A1303 62 HET PX4 A1304 83 HET PX4 A1305 40 HET SO4 A1306 5 HETNAM NA SODIUM ION HETNAM PX4 1,2-DIMYRISTOYL-SN-GLYCERO-3-PHOSPHOCHOLINE HETNAM SO4 SULFATE ION FORMUL 2 NA NA 1+ FORMUL 3 PX4 4(C36 H73 N O8 P 1+) FORMUL 7 SO4 O4 S 2- FORMUL 8 HOH *12(H2 O) HELIX 1 AA1 SER A 999 GLU A 1010 1 12 HELIX 2 AA2 SER A 1011 GLU A 1032 1 22 HELIX 3 AA3 SER A 1034 ARG A 1068 1 35 HELIX 4 AA4 ARG A 1068 LYS A 1073 1 6 HELIX 5 AA5 ASP A 1074 VAL A 1089 1 16 HELIX 6 AA6 ILE A 1097 ARG A 1102 1 6 HELIX 7 AA7 VAL A 1103 LEU A 1106 5 4 HELIX 8 AA8 PHE A 1107 ALA A 1112 1 6 HELIX 9 AA9 VAL A 1113 GLY A 1153 1 41 HELIX 10 AB1 PHE A 1156 GLY A 1161 1 6 HELIX 11 AB2 THR A 1162 THR A 1175 1 14 HELIX 12 AB3 ILE A 1183 GLU A 1189 1 7 HELIX 13 AB4 TYR A 1193 ALA A 1215 1 23 HELIX 14 AB5 ILE A 1216 ASP A 1219 5 4 SITE 1 AC1 6 ILE A1097 TYR A1191 TYR A1193 ALA A1194 SITE 2 AC1 6 VAL A1196 HOH A1410 SITE 1 AC2 9 GLY A1164 GLU A1165 PHE A1167 TYR A1168 SITE 2 AC2 9 MET A1188 PRO A1192 TRP A1195 PX4 A1304 SITE 3 AC2 9 HOH A1401 SITE 1 AC3 9 ILE A1027 GLY A1030 SER A1034 THR A1036 SITE 2 AC3 9 THR A1138 TYR A1142 THR A1162 GLY A1164 SITE 3 AC3 9 PX4 A1303 SITE 1 AC4 3 PRO A1075 TRP A1076 SER A1121 SITE 1 AC5 4 PHE A1156 PRO A1157 GLU A1158 TRP A1159 CRYST1 125.302 125.302 192.424 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007981 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007981 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005197 0.00000 MASTER 475 0 6 14 0 0 10 6 0 0 0 19 END