HEADER OXIDOREDUCTASE 04-FEB-17 5UPX TITLE CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE TITLE 2 DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN THE PRESENCE OF TITLE 3 XANTHOSINE MONOPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: IMPDH; COMPND 5 EC: 1.1.1.205; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN SOURCE 3 ATCC BAA-679 / EGD-E); SOURCE 4 ORGANISM_TAXID: 169963; SOURCE 5 STRAIN: ATCC BAA-679 / EGD-E; SOURCE 6 GENE: GUAB; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) MAGIC; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PMCSG50 KEYWDS ALPHA-BETA STRUCTURE, TIM BARREL, IMPDH, STRUCTURAL GENOMICS, CENTER KEYWDS 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES, CSGID, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.KIM,M.MAKOWSKA-GRZYSKA,J.OSIPIUK,W.F.ANDERSON,A.JOACHIMIAK,CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES (CSGID) REVDAT 3 01-JAN-20 5UPX 1 REMARK REVDAT 2 20-SEP-17 5UPX 1 REMARK REVDAT 1 05-APR-17 5UPX 0 JRNL AUTH Y.KIM,M.MAKOWSKA-GRZYSKA,J.OSIPIUK,W.F.ANDERSON, JRNL AUTH 2 A.JOACHIMIAK, JRNL AUTH 3 CENTER FOR STRUCTURAL GENOMICS OF INFECTIOUS DISEASES JRNL AUTH 4 (CSGID) JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE JRNL TITL 2 MONOPHOSPHATE DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN JRNL TITL 3 THE PRESENCE OF XANTHOSINE MONOPHOSPHATE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2411: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.60 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 34022 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.166 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.202 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1711 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6055 - 4.2447 0.99 2769 117 0.1436 0.1793 REMARK 3 2 4.2447 - 3.3698 1.00 2714 161 0.1463 0.1826 REMARK 3 3 3.3698 - 2.9440 1.00 2747 142 0.1724 0.1899 REMARK 3 4 2.9440 - 2.6749 1.00 2697 161 0.1715 0.2142 REMARK 3 5 2.6749 - 2.4832 1.00 2746 144 0.1719 0.2037 REMARK 3 6 2.4832 - 2.3368 1.00 2678 143 0.1802 0.2245 REMARK 3 7 2.3368 - 2.2198 1.00 2720 152 0.1687 0.2090 REMARK 3 8 2.2198 - 2.1232 1.00 2687 161 0.1691 0.2303 REMARK 3 9 2.1232 - 2.0415 1.00 2730 145 0.1820 0.2151 REMARK 3 10 2.0415 - 1.9710 1.00 2736 120 0.1952 0.2385 REMARK 3 11 1.9710 - 1.9094 1.00 2693 142 0.2156 0.2701 REMARK 3 12 1.9094 - 1.8548 0.87 2394 123 0.2444 0.2970 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.870 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2942 REMARK 3 ANGLE : 0.849 3977 REMARK 3 CHIRALITY : 0.057 454 REMARK 3 PLANARITY : 0.005 516 REMARK 3 DIHEDRAL : 19.683 1769 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -2 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.3849 -34.0910 6.0171 REMARK 3 T TENSOR REMARK 3 T11: 0.2344 T22: 0.2417 REMARK 3 T33: 0.1714 T12: 0.0150 REMARK 3 T13: 0.0391 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 2.1172 L22: 1.9502 REMARK 3 L33: 0.7026 L12: 0.1446 REMARK 3 L13: 0.0029 L23: -0.3292 REMARK 3 S TENSOR REMARK 3 S11: -0.0233 S12: -0.2114 S13: 0.0534 REMARK 3 S21: 0.0616 S22: 0.0314 S23: 0.2233 REMARK 3 S31: 0.0503 S32: -0.0477 S33: -0.0174 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 57 THROUGH 242 ) REMARK 3 ORIGIN FOR THE GROUP (A): 13.5886 -18.4800 -7.3208 REMARK 3 T TENSOR REMARK 3 T11: 0.2590 T22: 0.2613 REMARK 3 T33: 0.4870 T12: 0.0466 REMARK 3 T13: -0.0672 T23: 0.0540 REMARK 3 L TENSOR REMARK 3 L11: 3.3047 L22: 4.4863 REMARK 3 L33: 2.6058 L12: 0.8892 REMARK 3 L13: -0.6566 L23: -0.5846 REMARK 3 S TENSOR REMARK 3 S11: 0.0772 S12: 0.3036 S13: 0.3841 REMARK 3 S21: -0.2607 S22: -0.0177 S23: 0.7814 REMARK 3 S31: -0.1396 S32: -0.2607 S33: 0.0118 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 243 THROUGH 389 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9937 -25.1723 1.4136 REMARK 3 T TENSOR REMARK 3 T11: 0.2129 T22: 0.2151 REMARK 3 T33: 0.1949 T12: 0.0027 REMARK 3 T13: 0.0181 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.9589 L22: 2.2791 REMARK 3 L33: 0.6104 L12: 0.1648 REMARK 3 L13: 0.4616 L23: -0.2981 REMARK 3 S TENSOR REMARK 3 S11: -0.0381 S12: 0.0936 S13: 0.1885 REMARK 3 S21: -0.0936 S22: 0.0627 S23: 0.0666 REMARK 3 S31: -0.0641 S32: 0.0417 S33: -0.0226 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 390 THROUGH 427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.4793 -18.3340 -13.0775 REMARK 3 T TENSOR REMARK 3 T11: 0.6515 T22: 0.4377 REMARK 3 T33: 0.5562 T12: -0.0611 REMARK 3 T13: -0.0045 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 3.4639 L22: 4.6379 REMARK 3 L33: 1.6883 L12: -0.3176 REMARK 3 L13: -0.1917 L23: 0.0931 REMARK 3 S TENSOR REMARK 3 S11: -0.0297 S12: 0.0357 S13: 1.0025 REMARK 3 S21: -0.4900 S22: 0.3082 S23: -0.8778 REMARK 3 S31: -0.7249 S32: 0.5854 S33: 0.1142 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 428 THROUGH 445 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0069 -41.9694 -4.2603 REMARK 3 T TENSOR REMARK 3 T11: 0.2334 T22: 0.2186 REMARK 3 T33: 0.3050 T12: 0.0016 REMARK 3 T13: -0.0415 T23: -0.0121 REMARK 3 L TENSOR REMARK 3 L11: 1.3045 L22: 4.8181 REMARK 3 L33: 2.8830 L12: 0.0683 REMARK 3 L13: 0.1041 L23: -1.8807 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.0991 S13: -0.0486 REMARK 3 S21: -0.5388 S22: 0.0095 S23: 0.5661 REMARK 3 S31: 0.1290 S32: -0.0627 S33: -0.0413 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 446 THROUGH 486 ) REMARK 3 ORIGIN FOR THE GROUP (A): 27.9856 -47.3254 0.0599 REMARK 3 T TENSOR REMARK 3 T11: 0.3567 T22: 0.2719 REMARK 3 T33: 0.2943 T12: -0.0062 REMARK 3 T13: 0.0466 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 3.4689 L22: 3.2519 REMARK 3 L33: 2.2583 L12: -0.9206 REMARK 3 L13: 0.3693 L23: -0.2298 REMARK 3 S TENSOR REMARK 3 S11: 0.1107 S12: 0.5272 S13: 0.0008 REMARK 3 S21: -0.4720 S22: -0.0770 S23: -0.0604 REMARK 3 S31: 0.2834 S32: 0.1157 S33: -0.0060 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5UPX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-FEB-17. REMARK 100 THE DEPOSITION ID IS D_1000226292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97921 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34028 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.76800 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: HKL-3000, MOLREP REMARK 200 STARTING MODEL: 4MJM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.5 12% (W/V) PEG 20,000, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.57400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.57400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 47.63250 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.57400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.57400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 47.63250 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 46.57400 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 46.57400 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 47.63250 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 46.57400 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 46.57400 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 47.63250 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 24260 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 54450 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.14800 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -93.14800 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 1.000000 0.000000 0.000000 -93.14800 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 93.14800 REMARK 350 BIOMT2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 204 REMARK 465 GLU A 205 REMARK 465 SER A 401 REMARK 465 LYS A 402 REMARK 465 ILE A 487 REMARK 465 SER A 488 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 54 -54.46 -120.05 REMARK 500 GLU A 56 -160.92 -120.05 REMARK 500 ALA A 282 10.09 -145.15 REMARK 500 LYS A 336 -167.82 -119.72 REMARK 500 TYR A 485 78.39 -150.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue XMP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: CSGID-IDP06352 RELATED DB: TARGETTRACK REMARK 900 RELATED ID: 5UPY RELATED DB: PDB DBREF 5UPX A 1 94 UNP Q926Y9 Q926Y9_LISMO 1 94 DBREF 5UPX A 96 488 UNP Q926Y9 Q926Y9_LISMO 201 488 SEQADV 5UPX SER A -2 UNP Q926Y9 EXPRESSION TAG SEQADV 5UPX ASN A -1 UNP Q926Y9 EXPRESSION TAG SEQADV 5UPX ALA A 0 UNP Q926Y9 EXPRESSION TAG SEQADV 5UPX GLY A 95 UNP Q926Y9 LINKER SEQRES 1 A 386 SER ASN ALA MET TRP GLU THR LYS PHE ALA LYS GLU GLY SEQRES 2 A 386 LEU THR PHE ASP ASP VAL LEU LEU VAL PRO ALA LYS SER SEQRES 3 A 386 ASP VAL LEU PRO ASN ASP VAL ASP LEU SER VAL GLU MET SEQRES 4 A 386 ALA PRO SER LEU LYS LEU ASN VAL PRO ILE TRP SER ALA SEQRES 5 A 386 GLY MET ASP THR ILE THR GLU ALA LYS MET ALA ILE ALA SEQRES 6 A 386 ILE ALA ARG GLN GLY GLY ILE GLY VAL VAL HIS LYS ASN SEQRES 7 A 386 MET SER ILE GLU GLN GLN ALA GLU GLU ILE GLU LYS VAL SEQRES 8 A 386 LYS ARG SER GLU SER GLY GLY ILE LYS ASP ILE GLU LYS SEQRES 9 A 386 VAL ILE GLU PHE PRO ASN SER ALA LYS ASP LYS HIS GLY SEQRES 10 A 386 ARG LEU LEU ALA ALA ALA ALA VAL GLY ILE THR ASN ASP SEQRES 11 A 386 THR PHE VAL ARG VAL GLU LYS LEU ILE GLU ALA GLY VAL SEQRES 12 A 386 ASP ALA ILE VAL ILE ASP THR ALA HIS GLY HIS SER ALA SEQRES 13 A 386 GLY VAL ILE ASN LYS ILE SER GLU ILE ARG GLN THR PHE SEQRES 14 A 386 LYS ASP VAL VAL ILE VAL ALA GLY ASN VAL ALA THR ALA SEQRES 15 A 386 GLU GLY ALA ARG ALA LEU PHE GLU VAL GLY VAL ASP ILE SEQRES 16 A 386 VAL LYS VAL GLY ILE GLY PRO GLY SER ILE CYS THR THR SEQRES 17 A 386 ARG VAL VAL ALA GLY VAL GLY VAL PRO GLN ILE THR ALA SEQRES 18 A 386 ILE TYR ASP CYS ALA THR VAL ALA ARG GLU PHE GLY LYS SEQRES 19 A 386 THR ILE ILE ALA ASP GLY GLY ILE LYS TYR SER GLY ASP SEQRES 20 A 386 ILE VAL LYS ALA LEU ALA ALA GLY GLY ASN ALA VAL MET SEQRES 21 A 386 LEU GLY SER MET LEU ALA GLY THR ASP GLU SER PRO GLY SEQRES 22 A 386 GLU THR GLU ILE PHE GLN GLY ARG GLN PHE LYS THR TYR SEQRES 23 A 386 ARG GLY MET GLY SER LEU ALA ALA MET GLU HIS GLY SER SEQRES 24 A 386 LYS ASP ARG TYR PHE GLN ALA ASP ALA LYS LYS LEU VAL SEQRES 25 A 386 PRO GLU GLY ILE GLU GLY ARG VAL PRO TYR LYS GLY SER SEQRES 26 A 386 VAL ALA ASP ILE ILE PHE GLN LEU VAL GLY GLY ILE ARG SEQRES 27 A 386 SER GLY MET GLY TYR THR GLY SER PRO ASP LEU ARG HIS SEQRES 28 A 386 LEU ARG GLU GLU ALA ALA PHE VAL ARG MET THR GLY ALA SEQRES 29 A 386 GLY LEU ARG GLU SER HIS PRO HIS ASP ILE GLN ILE THR SEQRES 30 A 386 LYS GLU ALA PRO ASN TYR SER ILE SER HET XMP A 500 24 HET GOL A 501 6 HETNAM XMP XANTHOSINE-5'-MONOPHOSPHATE HETNAM GOL GLYCEROL HETSYN XMP 5-MONOPHOSPHATE-9-BETA-D-RIBOFURANOSYL XANTHINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 XMP C10 H14 N4 O9 P 1+ FORMUL 3 GOL C3 H8 O3 FORMUL 4 HOH *145(H2 O) HELIX 1 AA1 SER A -2 THR A 4 1 7 HELIX 2 AA2 THR A 12 ASP A 14 5 3 HELIX 3 AA3 LEU A 26 VAL A 30 5 5 HELIX 4 AA4 GLU A 56 GLN A 66 1 11 HELIX 5 AA5 SER A 77 SER A 91 1 15 HELIX 6 AA6 ASP A 232 ALA A 243 1 12 HELIX 7 AA7 SER A 257 PHE A 271 1 15 HELIX 8 AA8 THR A 283 GLU A 292 1 10 HELIX 9 AA9 THR A 309 GLY A 315 1 7 HELIX 10 AB1 PRO A 319 GLY A 335 1 17 HELIX 11 AB2 TYR A 346 ALA A 356 1 11 HELIX 12 AB3 SER A 393 GLU A 398 1 6 HELIX 13 AB4 SER A 427 GLY A 447 1 21 HELIX 14 AB5 ASP A 450 ALA A 458 1 9 HELIX 15 AB6 THR A 464 HIS A 472 1 9 SHEET 1 AA1 2 VAL A 16 LEU A 18 0 SHEET 2 AA1 2 PHE A 460 ARG A 462 -1 O VAL A 461 N LEU A 17 SHEET 1 AA2 2 VAL A 34 ALA A 37 0 SHEET 2 AA2 2 LEU A 40 LEU A 42 -1 O LEU A 42 N VAL A 34 SHEET 1 AA3 9 ILE A 46 SER A 48 0 SHEET 2 AA3 9 ILE A 69 VAL A 72 1 O ILE A 69 N SER A 48 SHEET 3 AA3 9 ALA A 224 VAL A 227 1 O ALA A 226 N VAL A 72 SHEET 4 AA3 9 ALA A 247 ASP A 251 1 O VAL A 249 N VAL A 227 SHEET 5 AA3 9 VAL A 275 VAL A 281 1 O VAL A 277 N ILE A 248 SHEET 6 AA3 9 ILE A 297 VAL A 300 1 O LYS A 299 N ALA A 278 SHEET 7 AA3 9 THR A 337 ASP A 341 1 O ILE A 339 N VAL A 300 SHEET 8 AA3 9 ALA A 360 LEU A 363 1 O ALA A 360 N ALA A 340 SHEET 9 AA3 9 ILE A 46 SER A 48 1 N TRP A 47 O VAL A 361 SHEET 1 AA4 2 GLY A 95 ILE A 96 0 SHEET 2 AA4 2 ILE A 208 GLU A 209 -1 O ILE A 208 N ILE A 96 SHEET 1 AA5 3 GLU A 378 PHE A 380 0 SHEET 2 AA5 3 ARG A 383 ARG A 389 -1 O ARG A 383 N PHE A 380 SHEET 3 AA5 3 GLU A 419 PRO A 423 -1 O VAL A 422 N LYS A 386 CISPEP 1 GLY A 279 ASN A 280 0 -0.38 SITE 1 AC1 25 ALA A 49 MET A 51 GLY A 305 SER A 306 SITE 2 AC1 25 ILE A 307 CYS A 308 THR A 310 ASP A 341 SITE 3 AC1 25 GLY A 342 GLY A 343 MET A 362 GLY A 364 SITE 4 AC1 25 SER A 365 TYR A 388 GLY A 390 MET A 391 SITE 5 AC1 25 GLY A 392 GLU A 416 GLY A 417 HOH A 634 SITE 6 AC1 25 HOH A 644 HOH A 661 HOH A 677 HOH A 680 SITE 7 AC1 25 HOH A 697 SITE 1 AC2 4 HIS A 254 SER A 441 GLY A 444 TYR A 445 CRYST1 93.148 93.148 95.265 90.00 90.00 90.00 I 4 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010736 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010736 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010497 0.00000 MASTER 366 0 2 15 18 0 8 6 0 0 0 30 END