HEADER HYDROLASE 20-OCT-16 5TPC TITLE BINDING DOMAIN OF BONT/A COMPLEXED WITH GANGLIOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: BOTULINUM NEUROTOXIN TYPE A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: BONT/A,BONTOXILYSIN-A,BOTOX; COMPND 5 EC: 3.4.24.69; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM BOTULINUM; SOURCE 3 ORGANISM_TAXID: 1491; SOURCE 4 GENE: BOTA, ATX, BNA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS BINDING DOMAIN, LECTIN, GANGLIOSIDE BINDING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.P.-A.BERNTSSON,L.M.SVENSSON,P.STENMARK REVDAT 2 29-JUL-20 5TPC 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE ATOM REVDAT 1 18-JAN-17 5TPC 0 JRNL AUTH C.HAMARK,R.P.BERNTSSON,G.MASUYER,L.M.HENRIKSSON, JRNL AUTH 2 R.GUSTAFSSON,P.STENMARK,G.WIDMALM JRNL TITL GLYCANS CONFER SPECIFICITY TO THE RECOGNITION OF GANGLIOSIDE JRNL TITL 2 RECEPTORS BY BOTULINUM NEUROTOXIN A. JRNL REF J. AM. CHEM. SOC. V. 139 218 2017 JRNL REFN ESSN 1520-5126 JRNL PMID 27958736 JRNL DOI 10.1021/JACS.6B09534 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0073 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 62.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 28636 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1532 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2101 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.67 REMARK 3 BIN R VALUE (WORKING SET) : 0.2710 REMARK 3 BIN FREE R VALUE SET COUNT : 120 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3501 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 77 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.13000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.19000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.230 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.181 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.145 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.183 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3700 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5017 ; 1.356 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 434 ; 6.623 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 191 ;38.192 ;24.921 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 656 ;15.001 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;20.954 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 548 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2799 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1724 ; 0.970 ; 1.341 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2162 ; 1.742 ; 2.005 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1976 ; 1.231 ; 1.632 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 873 A 1297 REMARK 3 ORIGIN FOR THE GROUP (A): 19.7931 24.1511 5.8404 REMARK 3 T TENSOR REMARK 3 T11: 0.0374 T22: 0.1490 REMARK 3 T33: 0.0037 T12: -0.0036 REMARK 3 T13: -0.0006 T23: -0.0092 REMARK 3 L TENSOR REMARK 3 L11: 0.2120 L22: 1.0955 REMARK 3 L33: 1.6132 L12: 0.0081 REMARK 3 L13: -0.2372 L23: -0.5788 REMARK 3 S TENSOR REMARK 3 S11: -0.0112 S12: 0.0251 S13: -0.0119 REMARK 3 S21: 0.0961 S22: 0.0316 S23: 0.0321 REMARK 3 S31: -0.1149 S32: -0.0126 S33: -0.0204 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 5TPC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1000207376. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-NOV-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92526 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30186 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 63.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.12100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.56500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2VU9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.69 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000, 0.2 M MGCL2, 0.1 M HEPES REMARK 280 PH 7.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.24750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.24750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.98600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.15100 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.98600 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.15100 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.24750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.98600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.15100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.24750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.98600 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.15100 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1560 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1673 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4 GAL B 1 C1 NGA C 1 1.56 REMARK 500 O3 GAL C 2 C3 SIA C 3 2.03 REMARK 500 O ASN A 1126 O HOH A 1401 2.05 REMARK 500 O3 GAL B 1 C1 SIA B 2 2.08 REMARK 500 O3 GAL C 2 O6 SIA C 3 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 935 85.82 -153.23 REMARK 500 ASN A1025 -91.98 -144.87 REMARK 500 LYS A1056 136.16 -177.29 REMARK 500 ASP A1076 40.01 -96.17 REMARK 500 ASP A1118 76.13 -117.68 REMARK 500 VAL A1125 -55.97 -121.44 REMARK 500 ASN A1126 -68.35 81.53 REMARK 500 ASN A1147 -9.07 68.52 REMARK 500 TYR A1165 -66.76 -123.08 REMARK 500 ASP A1171 -178.40 -69.89 REMARK 500 ASN A1177 -0.72 79.24 REMARK 500 GLN A1219 -20.35 -149.43 REMARK 500 ASP A1228 -152.84 -151.52 REMARK 500 ARG A1273 -12.17 64.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NGA C 1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2VU9 RELATED DB: PDB REMARK 900 2VU9 CONTAINS THE SAME PROTEIN COMPLEXED TO GT1B DBREF 5TPC A 876 1296 UNP P10845 BXA1_CLOBO 876 1296 SEQADV 5TPC HIS A 873 UNP P10845 EXPRESSION TAG SEQADV 5TPC MET A 874 UNP P10845 EXPRESSION TAG SEQADV 5TPC ASP A 875 UNP P10845 EXPRESSION TAG SEQADV 5TPC GLN A 1297 UNP P10845 EXPRESSION TAG SEQRES 1 A 425 HIS MET ASP THR SER ILE LEU ASN LEU ARG TYR GLU SER SEQRES 2 A 425 ASN HIS LEU ILE ASP LEU SER ARG TYR ALA SER LYS ILE SEQRES 3 A 425 ASN ILE GLY SER LYS VAL ASN PHE ASP PRO ILE ASP LYS SEQRES 4 A 425 ASN GLN ILE GLN LEU PHE ASN LEU GLU SER SER LYS ILE SEQRES 5 A 425 GLU VAL ILE LEU LYS ASN ALA ILE VAL TYR ASN SER MET SEQRES 6 A 425 TYR GLU ASN PHE SER THR SER PHE TRP ILE ARG ILE PRO SEQRES 7 A 425 LYS TYR PHE ASN SER ILE SER LEU ASN ASN GLU TYR THR SEQRES 8 A 425 ILE ILE ASN CYS MET GLU ASN ASN SER GLY TRP LYS VAL SEQRES 9 A 425 SER LEU ASN TYR GLY GLU ILE ILE TRP THR LEU GLN ASP SEQRES 10 A 425 THR GLN GLU ILE LYS GLN ARG VAL VAL PHE LYS TYR SER SEQRES 11 A 425 GLN MET ILE ASN ILE SER ASP TYR ILE ASN ARG TRP ILE SEQRES 12 A 425 PHE VAL THR ILE THR ASN ASN ARG LEU ASN ASN SER LYS SEQRES 13 A 425 ILE TYR ILE ASN GLY ARG LEU ILE ASP GLN LYS PRO ILE SEQRES 14 A 425 SER ASN LEU GLY ASN ILE HIS ALA SER ASN ASN ILE MET SEQRES 15 A 425 PHE LYS LEU ASP GLY CYS ARG ASP THR HIS ARG TYR ILE SEQRES 16 A 425 TRP ILE LYS TYR PHE ASN LEU PHE ASP LYS GLU LEU ASN SEQRES 17 A 425 GLU LYS GLU ILE LYS ASP LEU TYR ASP ASN GLN SER ASN SEQRES 18 A 425 SER GLY ILE LEU LYS ASP PHE TRP GLY ASP TYR LEU GLN SEQRES 19 A 425 TYR ASP LYS PRO TYR TYR MET LEU ASN LEU TYR ASP PRO SEQRES 20 A 425 ASN LYS TYR VAL ASP VAL ASN ASN VAL GLY ILE ARG GLY SEQRES 21 A 425 TYR MET TYR LEU LYS GLY PRO ARG GLY SER VAL MET THR SEQRES 22 A 425 THR ASN ILE TYR LEU ASN SER SER LEU TYR ARG GLY THR SEQRES 23 A 425 LYS PHE ILE ILE LYS LYS TYR ALA SER GLY ASN LYS ASP SEQRES 24 A 425 ASN ILE VAL ARG ASN ASN ASP ARG VAL TYR ILE ASN VAL SEQRES 25 A 425 VAL VAL LYS ASN LYS GLU TYR ARG LEU ALA THR ASN ALA SEQRES 26 A 425 SER GLN ALA GLY VAL GLU LYS ILE LEU SER ALA LEU GLU SEQRES 27 A 425 ILE PRO ASP VAL GLY ASN LEU SER GLN VAL VAL VAL MET SEQRES 28 A 425 LYS SER LYS ASN ASP GLN GLY ILE THR ASN LYS CYS LYS SEQRES 29 A 425 MET ASN LEU GLN ASP ASN ASN GLY ASN ASP ILE GLY PHE SEQRES 30 A 425 ILE GLY PHE HIS GLN PHE ASN ASN ILE ALA LYS LEU VAL SEQRES 31 A 425 ALA SER ASN TRP TYR ASN ARG GLN ILE GLU ARG SER SER SEQRES 32 A 425 ARG THR LEU GLY CYS SER TRP GLU PHE ILE PRO VAL ASP SEQRES 33 A 425 ASP GLY TRP GLY GLU ARG PRO LEU GLN HET GAL B 1 12 HET SIA B 2 20 HET NGA C 1 14 HET GAL C 2 11 HET SIA C 3 20 HETNAM GAL BETA-D-GALACTOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE FORMUL 2 GAL 2(C6 H12 O6) FORMUL 2 SIA 2(C11 H19 N O9) FORMUL 3 NGA C8 H15 N O6 FORMUL 4 HOH *326(H2 O) HELIX 1 AA1 LYS A 929 VAL A 933 5 5 HELIX 2 AA2 ASN A 954 LEU A 958 5 5 HELIX 3 AA3 ASN A 1080 SER A 1092 1 13 HELIX 4 AA4 GLU A 1210 VAL A 1214 5 5 HELIX 5 AA5 SER A 1274 CYS A 1280 5 7 SHEET 1 AA1 5 HIS A 887 ASP A 890 0 SHEET 2 AA1 5 SER A 877 GLU A 884 -1 N ARG A 882 O ILE A 889 SHEET 3 AA1 5 TYR A1066 PHE A1075 -1 O LEU A1074 N ILE A 878 SHEET 4 AA1 5 ILE A 914 PHE A 917 -1 N ILE A 914 O ILE A1069 SHEET 5 AA1 5 ASN A 905 PHE A 906 -1 N ASN A 905 O GLN A 915 SHEET 1 AA2 7 HIS A 887 ASP A 890 0 SHEET 2 AA2 7 SER A 877 GLU A 884 -1 N ARG A 882 O ILE A 889 SHEET 3 AA2 7 TYR A1066 PHE A1075 -1 O LEU A1074 N ILE A 878 SHEET 4 AA2 7 PHE A 941 ARG A 948 -1 N SER A 944 O ASN A1073 SHEET 5 AA2 7 ILE A1015 ASN A1021 -1 O VAL A1017 N PHE A 945 SHEET 6 AA2 7 ASN A1026 ILE A1031 -1 O TYR A1030 N THR A1018 SHEET 7 AA2 7 ARG A1034 PRO A1040 -1 O ILE A1036 N ILE A1029 SHEET 1 AA3 7 LYS A 897 ILE A 900 0 SHEET 2 AA3 7 ILE A 924 ILE A 927 -1 O GLU A 925 N ASN A 899 SHEET 3 AA3 7 ASN A1052 ASP A1058 -1 O PHE A1055 N ILE A 924 SHEET 4 AA3 7 TYR A 962 GLU A 969 -1 N THR A 963 O ASP A1058 SHEET 5 AA3 7 SER A 972 ASN A 979 -1 O LEU A 978 N TYR A 962 SHEET 6 AA3 7 GLU A 982 GLN A 988 -1 O ILE A 984 N SER A 977 SHEET 7 AA3 7 LYS A 994 LYS A1000 -1 O GLN A 995 N LEU A 987 SHEET 1 AA4 2 ASN A 935 SER A 936 0 SHEET 2 AA4 2 ILE A1047 HIS A1048 -1 O ILE A1047 N SER A 936 SHEET 1 AA5 2 TYR A1112 ASN A1115 0 SHEET 2 AA5 2 TRP A1282 ILE A1285 -1 O ILE A1285 N TYR A1112 SHEET 1 AA6 8 TYR A1122 ASP A1124 0 SHEET 2 AA6 8 TYR A1135 LYS A1137 -1 O LYS A1137 N TYR A1122 SHEET 3 AA6 8 ILE A1258 SER A1264 -1 O ALA A1259 N LEU A1136 SHEET 4 AA6 8 ASP A1246 PHE A1255 -1 N PHE A1255 O ILE A1258 SHEET 5 AA6 8 CYS A1235 GLN A1240 -1 N LEU A1239 O ILE A1247 SHEET 6 AA6 8 VAL A1220 SER A1225 -1 N VAL A1220 O GLN A1240 SHEET 7 AA6 8 ARG A1179 VAL A1186 -1 N VAL A1180 O VAL A1221 SHEET 8 AA6 8 GLU A1203 ILE A1205 0 SHEET 1 AA7 8 PHE A1160 LYS A1164 0 SHEET 2 AA7 8 ARG A1179 VAL A1186 -1 O TYR A1181 N LYS A1163 SHEET 3 AA7 8 VAL A1220 SER A1225 -1 O VAL A1221 N VAL A1180 SHEET 4 AA7 8 CYS A1235 GLN A1240 -1 O GLN A1240 N VAL A1220 SHEET 5 AA7 8 ASP A1246 PHE A1255 -1 O ILE A1247 N LEU A1239 SHEET 6 AA7 8 ILE A1258 SER A1264 -1 O ILE A1258 N PHE A1255 SHEET 7 AA7 8 LYS A1189 ALA A1194 0 SHEET 8 AA7 8 SER A1207 LEU A1209 -1 O LEU A1209 N ARG A1192 SHEET 1 AA8 2 SER A1142 THR A1145 0 SHEET 2 AA8 2 TYR A1149 SER A1152 -1 O ASN A1151 N VAL A1143 LINK ND2AASN A1051 O9 SIA C 3 1555 8555 1.29 LINK O3 GAL B 1 C2 SIA B 2 1555 1555 1.53 LINK O3 NGA C 1 C1 GAL C 2 1555 1555 1.44 LINK O3 GAL C 2 C2 SIA C 3 1555 1555 1.33 CISPEP 1 GLY A 1138 PRO A 1139 0 4.34 CRYST1 73.972 114.302 106.495 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013519 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008749 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009390 0.00000 MASTER 336 0 5 5 41 0 0 6 0 0 0 33 END