HEADER DNA BINDING PROTEIN 28-SEP-16 5TGX TITLE RESTRICTION/MODIFICATION SYSTEM-TYPE II R-SWAI COMPLEXED WITH TITLE 2 PARTIALLY CLEAVED DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: R-SWAI PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: SEMET INCORPORATED; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (26-MER); COMPND 8 CHAIN: H, J; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 3; COMPND 11 MOLECULE: DNA (26-MER); COMPND 12 CHAIN: I, K; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS WARNERI; SOURCE 3 ORGANISM_TAXID: 1292; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: ER2566; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PHKT7; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 12 ORGANISM_TAXID: 32630; SOURCE 13 MOL_ID: 3; SOURCE 14 SYNTHETIC: YES; SOURCE 15 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 16 ORGANISM_TAXID: 32630 KEYWDS R-SWAI, UNCLEAVED DNA COMPLEX, R/M SYSTEM, RARE CUTTER, DNA BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.W.SHEN,B.L.STODDARD REVDAT 4 25-DEC-19 5TGX 1 REMARK REVDAT 3 20-SEP-17 5TGX 1 REMARK REVDAT 2 21-JUN-17 5TGX 1 JRNL REVDAT 1 21-DEC-16 5TGX 0 JRNL AUTH B.W.SHEN,D.F.HEITER,K.D.LUNNEN,G.G.WILSON,B.L.STODDARD JRNL TITL DNA RECOGNITION BY THE SWAI RESTRICTION ENDONUCLEASE JRNL TITL 2 INVOLVES UNUSUAL DISTORTION OF AN 8 BASE PAIR A:T-RICH JRNL TITL 3 TARGET. JRNL REF NUCLEIC ACIDS RES. V. 45 1516 2017 JRNL REFN ESSN 1362-4962 JRNL PMID 28180307 JRNL DOI 10.1093/NAR/GKW1200 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0124 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 3 NUMBER OF REFLECTIONS : 53972 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.200 REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 2971 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2818 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 67.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.3310 REMARK 3 BIN FREE R VALUE SET COUNT : 126 REMARK 3 BIN FREE R VALUE : 0.3570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7541 REMARK 3 NUCLEIC ACID ATOMS : 2145 REMARK 3 HETEROGEN ATOMS : 32 REMARK 3 SOLVENT ATOMS : 212 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.46 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 68.23 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.53000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : 1.34000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.99000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.408 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.249 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.233 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 20.475 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 10365 ; 0.017 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): 8714 ; 0.010 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 14424 ; 1.928 ; 1.744 REMARK 3 BOND ANGLES OTHERS (DEGREES): 20245 ; 1.691 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 908 ; 6.775 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 409 ;41.056 ;25.110 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1461 ;17.270 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 36 ;21.498 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1421 ; 0.112 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 10043 ; 0.014 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 2374 ; 0.009 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3621 ; 1.940 ; 2.916 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3619 ; 1.932 ; 2.914 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4526 ; 3.047 ; 4.365 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 4527 ; 3.047 ; 4.365 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 6744 ; 2.517 ; 3.490 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 6745 ; 2.517 ; 3.491 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 9897 ; 3.941 ; 5.171 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 12284 ; 6.375 ;27.900 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 12285 ; 6.375 ;27.904 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 12 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 2 226 B 2 226 27738 0.07 0.05 REMARK 3 2 A 2 226 C 2 226 27320 0.08 0.05 REMARK 3 3 A 2 226 D 2 226 27642 0.07 0.05 REMARK 3 4 B 2 226 C 2 226 27208 0.09 0.05 REMARK 3 5 B 2 226 D 2 226 27326 0.08 0.05 REMARK 3 6 C 2 226 D 2 226 27390 0.09 0.05 REMARK 3 7 H 6 36 I 6 35 2910 0.02 0.05 REMARK 3 8 H 2 36 J 2 36 3692 0.11 0.05 REMARK 3 9 H 6 36 K 6 35 2908 0.04 0.05 REMARK 3 10 I 6 36 J 6 35 2844 0.07 0.05 REMARK 3 11 I 2 37 K 2 37 3922 0.11 0.05 REMARK 3 12 J 6 36 K 6 35 2836 0.08 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 226 REMARK 3 ORIGIN FOR THE GROUP (A): 5.2931 36.4364 33.7589 REMARK 3 T TENSOR REMARK 3 T11: 0.0591 T22: 0.2275 REMARK 3 T33: 0.0210 T12: -0.0147 REMARK 3 T13: -0.0217 T23: 0.0228 REMARK 3 L TENSOR REMARK 3 L11: 2.9849 L22: 1.6167 REMARK 3 L33: 4.0405 L12: -0.7213 REMARK 3 L13: -0.3663 L23: 0.0269 REMARK 3 S TENSOR REMARK 3 S11: -0.0789 S12: 0.0085 S13: 0.1928 REMARK 3 S21: -0.0971 S22: 0.0539 S23: 0.0407 REMARK 3 S31: -0.3863 S32: -0.2930 S33: 0.0250 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 226 REMARK 3 ORIGIN FOR THE GROUP (A): 28.3741 27.6891 22.8719 REMARK 3 T TENSOR REMARK 3 T11: 0.0932 T22: 0.4411 REMARK 3 T33: 0.0396 T12: -0.0004 REMARK 3 T13: 0.0394 T23: 0.0178 REMARK 3 L TENSOR REMARK 3 L11: 3.1594 L22: 1.4719 REMARK 3 L33: 2.4970 L12: -0.0033 REMARK 3 L13: -0.4534 L23: -0.3810 REMARK 3 S TENSOR REMARK 3 S11: -0.0642 S12: 0.1579 S13: -0.0652 REMARK 3 S21: -0.2043 S22: -0.0727 S23: -0.2290 REMARK 3 S31: 0.1011 S32: 0.5932 S33: 0.1369 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 2 C 226 REMARK 3 ORIGIN FOR THE GROUP (A): -9.2525 30.6363 84.8421 REMARK 3 T TENSOR REMARK 3 T11: 0.1049 T22: 0.4777 REMARK 3 T33: 0.0615 T12: 0.1122 REMARK 3 T13: 0.0388 T23: 0.0345 REMARK 3 L TENSOR REMARK 3 L11: 3.4119 L22: 1.5253 REMARK 3 L33: 3.3692 L12: -0.2985 REMARK 3 L13: -0.8022 L23: -0.0376 REMARK 3 S TENSOR REMARK 3 S11: -0.0485 S12: -0.0726 S13: 0.0568 REMARK 3 S21: 0.2188 S22: 0.1935 S23: 0.2833 REMARK 3 S31: -0.1524 S32: -0.5384 S33: -0.1450 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 2 D 226 REMARK 3 ORIGIN FOR THE GROUP (A): 14.9736 35.7794 74.0712 REMARK 3 T TENSOR REMARK 3 T11: 0.1425 T22: 0.4039 REMARK 3 T33: 0.0344 T12: 0.0017 REMARK 3 T13: -0.0442 T23: -0.0840 REMARK 3 L TENSOR REMARK 3 L11: 2.6035 L22: 1.1496 REMARK 3 L33: 4.6891 L12: 0.1354 REMARK 3 L13: -0.2992 L23: -0.6613 REMARK 3 S TENSOR REMARK 3 S11: -0.0942 S12: -0.0455 S13: 0.1217 REMARK 3 S21: 0.2384 S22: 0.0455 S23: -0.0953 REMARK 3 S31: -0.6821 S32: 0.5935 S33: 0.0487 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 2 H 37 REMARK 3 ORIGIN FOR THE GROUP (A): 11.9361 24.5079 26.9378 REMARK 3 T TENSOR REMARK 3 T11: 0.0563 T22: 0.1617 REMARK 3 T33: 0.1207 T12: -0.0184 REMARK 3 T13: 0.0017 T23: -0.0966 REMARK 3 L TENSOR REMARK 3 L11: 4.1879 L22: 5.8871 REMARK 3 L33: 5.9403 L12: 0.0869 REMARK 3 L13: 0.1001 L23: -0.1340 REMARK 3 S TENSOR REMARK 3 S11: 0.0591 S12: 0.3026 S13: -0.5463 REMARK 3 S21: -0.0204 S22: 0.0122 S23: 0.3785 REMARK 3 S31: 0.5217 S32: 0.1657 S33: -0.0712 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : I 2 I 37 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8695 24.0305 26.0004 REMARK 3 T TENSOR REMARK 3 T11: 0.0886 T22: 0.1465 REMARK 3 T33: 0.1531 T12: -0.0510 REMARK 3 T13: -0.0103 T23: -0.0941 REMARK 3 L TENSOR REMARK 3 L11: 5.7038 L22: 2.7874 REMARK 3 L33: 6.2718 L12: -0.0180 REMARK 3 L13: 1.6501 L23: 0.5232 REMARK 3 S TENSOR REMARK 3 S11: 0.1625 S12: 0.2347 S13: -0.5792 REMARK 3 S21: -0.0861 S22: 0.0656 S23: 0.3542 REMARK 3 S31: 0.6240 S32: 0.0395 S33: -0.2281 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : J 1 J 37 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3026 23.6386 84.1953 REMARK 3 T TENSOR REMARK 3 T11: 0.0790 T22: 0.3093 REMARK 3 T33: 0.1400 T12: 0.1235 REMARK 3 T13: 0.0012 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 5.0153 L22: 3.5132 REMARK 3 L33: 6.0993 L12: 0.1235 REMARK 3 L13: 1.5001 L23: -1.0390 REMARK 3 S TENSOR REMARK 3 S11: 0.0395 S12: -0.3092 S13: -0.5627 REMARK 3 S21: 0.1716 S22: 0.2539 S23: -0.3085 REMARK 3 S31: 0.3229 S32: 0.0911 S33: -0.2933 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : K 2 K 37 REMARK 3 ORIGIN FOR THE GROUP (A): 6.4847 23.5662 81.6251 REMARK 3 T TENSOR REMARK 3 T11: 0.0951 T22: 0.2249 REMARK 3 T33: 0.1551 T12: 0.0729 REMARK 3 T13: -0.0082 T23: 0.0790 REMARK 3 L TENSOR REMARK 3 L11: 3.0814 L22: 5.0178 REMARK 3 L33: 6.6566 L12: 0.4811 REMARK 3 L13: 0.5333 L23: 0.5335 REMARK 3 S TENSOR REMARK 3 S11: 0.1025 S12: -0.3195 S13: -0.5843 REMARK 3 S21: 0.2449 S22: 0.0282 S23: -0.3839 REMARK 3 S31: 0.5695 S32: 0.0572 S33: -0.1307 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5TGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 - 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9794 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NONIUS KAPPA CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53972 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 12.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.85100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 24 - 28% PEG1000, 100 MM TRISHCL, 5 MM REMARK 280 CACL2,, PH 8.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 28.52900 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, H, I, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 14030 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26170 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -74.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 13770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -86.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D, J, K REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THE DNA STRANDS ARE PARTIALLY CLEAVED, THUS THE ALTERNATE REMARK 400 CONFORMATIONS: A CONFORMER (CLEAVED) AND B CONFORMER (UNCLEAVED) REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 MSE B 1 REMARK 465 MSE C 1 REMARK 465 MSE D 1 REMARK 465 DG H 1 REMARK 465 DC I 1 REMARK 465 DC K 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 137 CG OD1 OD2 REMARK 470 ASP B 137 CG OD1 OD2 REMARK 470 ASP C 137 CG OD1 OD2 REMARK 470 ASN C 146 CG OD1 ND2 REMARK 470 ASP D 137 CG OD1 OD2 REMARK 470 DC I 2 P OP1 OP2 REMARK 470 DC K 2 P OP1 OP2 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 DA K 25 N6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N6 DA J 7 O4 DT K 32 2.18 REMARK 500 O THR D 34 O HOH D 401 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS B 212 O ASN C 146 2546 2.10 REMARK 500 OH TYR A 148 OE2 GLU B 205 1565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 39 CD GLU B 39 OE1 0.068 REMARK 500 ASP B 147 CB ASP B 147 CG 0.135 REMARK 500 ASP C 147 CB ASP C 147 CG 0.137 REMARK 500 GLU D 120 CD GLU D 120 OE1 0.081 REMARK 500 DT H 14 O3' DA H 25 P 0.126 REMARK 500 DT J 14 O3' DA J 25 P -0.197 REMARK 500 DT K 14 O3' DA K 25 P 0.136 REMARK 500 DA K 25 C6 DA K 25 N6 -0.248 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MSE A 84 CG - SE - CE ANGL. DEV. = -16.5 DEGREES REMARK 500 ASP A 93 CB - CG - OD1 ANGL. DEV. = 6.1 DEGREES REMARK 500 PRO B 28 C - N - CA ANGL. DEV. = -10.5 DEGREES REMARK 500 ASP B 93 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP B 213 CB - CG - OD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 ASP C 93 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 GLU C 120 CA - CB - CG ANGL. DEV. = 13.8 DEGREES REMARK 500 MSE D 84 CG - SE - CE ANGL. DEV. = -14.2 DEGREES REMARK 500 ASP D 93 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 DG H 9 O5' - P - OP2 ANGL. DEV. = -7.2 DEGREES REMARK 500 DT H 14 C3' - O3' - P ANGL. DEV. = -11.4 DEGREES REMARK 500 DA H 25 O3' - P - OP2 ANGL. DEV. = 22.6 DEGREES REMARK 500 DA H 25 O3' - P - OP1 ANGL. DEV. = -14.8 DEGREES REMARK 500 DA H 25 O5' - P - OP1 ANGL. DEV. = 12.4 DEGREES REMARK 500 DA H 25 O5' - P - OP1 ANGL. DEV. = -11.7 DEGREES REMARK 500 DA H 25 O5' - P - OP2 ANGL. DEV. = -15.8 DEGREES REMARK 500 DG I 9 O5' - P - OP2 ANGL. DEV. = -8.5 DEGREES REMARK 500 DT I 14 C3' - O3' - P ANGL. DEV. = 8.8 DEGREES REMARK 500 DA I 25 O3' - P - OP2 ANGL. DEV. = -27.0 DEGREES REMARK 500 DA I 25 O5' - P - OP1 ANGL. DEV. = 7.5 DEGREES REMARK 500 DA I 25 O5' - P - OP2 ANGL. DEV. = 8.4 DEGREES REMARK 500 DA I 25 O5' - P - OP2 ANGL. DEV. = -14.9 DEGREES REMARK 500 DA I 26 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DT I 28 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DG I 29 C3' - C2' - C1' ANGL. DEV. = -5.1 DEGREES REMARK 500 DG J 9 O5' - P - OP2 ANGL. DEV. = -7.1 DEGREES REMARK 500 DA J 11 O5' - P - OP2 ANGL. DEV. = -5.7 DEGREES REMARK 500 DA J 25 O3' - P - OP2 ANGL. DEV. = 7.5 DEGREES REMARK 500 DA J 25 O3' - P - OP1 ANGL. DEV. = -17.3 DEGREES REMARK 500 DT J 28 O5' - P - OP2 ANGL. DEV. = -6.2 DEGREES REMARK 500 DG K 9 O5' - P - OP2 ANGL. DEV. = -6.7 DEGREES REMARK 500 DA K 25 O5' - P - OP1 ANGL. DEV. = 12.3 DEGREES REMARK 500 DA K 25 O5' - P - OP1 ANGL. DEV. = -5.9 DEGREES REMARK 500 DA K 26 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG K 29 C3' - C2' - C1' ANGL. DEV. = -4.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 34 -167.62 -105.45 REMARK 500 PHE A 123 -38.79 -159.88 REMARK 500 ASP A 137 -0.87 78.34 REMARK 500 PHE A 161 139.69 -33.57 REMARK 500 ASN B 29 48.18 70.61 REMARK 500 PHE B 123 -34.49 -157.95 REMARK 500 PHE B 161 137.57 -32.85 REMARK 500 PHE C 123 -34.99 -160.46 REMARK 500 PHE C 161 137.85 -34.67 REMARK 500 ILE C 173 -38.60 -39.75 REMARK 500 PHE D 123 -35.01 -160.87 REMARK 500 PHE D 161 137.56 -32.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 DA I 26 0.06 SIDE CHAIN REMARK 500 DA K 25 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 76 OD2 REMARK 620 2 ASP A 93 OD1 86.6 REMARK 620 3 PHE A 94 O 87.6 82.8 REMARK 620 4 DA H 25 OP1 108.6 107.5 160.9 REMARK 620 5 HOH H 202 O 171.5 89.1 84.5 79.7 REMARK 620 6 HOH A 439 O 90.7 161.7 79.0 90.6 91.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 76 OD2 REMARK 620 2 ASP B 93 OD1 88.8 REMARK 620 3 PHE B 94 O 94.1 83.1 REMARK 620 4 DA I 25 OP1 101.7 103.9 162.7 REMARK 620 5 HOH B 407 O 170.1 82.7 79.9 85.3 REMARK 620 6 HOH B 408 O 87.2 173.2 91.7 82.3 100.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 76 OD2 REMARK 620 2 ASP C 93 OD1 88.3 REMARK 620 3 PHE C 94 O 89.5 79.7 REMARK 620 4 DA J 25 OP1 111.4 100.6 159.0 REMARK 620 5 DA J 25 OP2 91.8 120.7 159.6 27.6 REMARK 620 6 HOH C 409 O 167.6 83.6 79.8 79.4 100.4 REMARK 620 7 HOH C 413 O 86.5 167.0 88.4 92.3 71.4 99.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 76 OD2 REMARK 620 2 ASP D 93 OD1 89.1 REMARK 620 3 PHE D 94 O 90.1 85.1 REMARK 620 4 DA K 25 OP1 106.8 95.3 163.1 REMARK 620 5 HOH D 421 O 86.3 161.7 77.2 102.9 REMARK 620 6 HOH D 409 O 170.8 89.0 80.7 82.4 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ACT B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO D 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO H 101 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TGQ RELATED DB: PDB REMARK 900 RELATED ID: 5TH3 RELATED DB: PDB DBREF 5TGX A 1 226 PDB 5TGX 5TGX 1 226 DBREF 5TGX B 1 226 PDB 5TGX 5TGX 1 226 DBREF 5TGX C 1 226 PDB 5TGX 5TGX 1 226 DBREF 5TGX D 1 226 PDB 5TGX 5TGX 1 226 DBREF 5TGX H 1 37 PDB 5TGX 5TGX 1 37 DBREF 5TGX I 1 37 PDB 5TGX 5TGX 1 37 DBREF 5TGX J 1 37 PDB 5TGX 5TGX 1 37 DBREF 5TGX K 1 37 PDB 5TGX 5TGX 1 37 SEQRES 1 A 226 MSE ASN PHE LYS LYS TYR GLU GLU ASN LEU VAL ALA SER SEQRES 2 A 226 ILE GLU GLU VAL ILE GLN ARG ILE ILE ASP ASP LYS HIS SEQRES 3 A 226 ARG PRO ASN ILE ILE GLY LYS THR ARG VAL GLY ALA GLU SEQRES 4 A 226 VAL SER ASP TYR LEU GLU ASP GLU PHE VAL LYS TYR ILE SEQRES 5 A 226 SER SER GLY LYS SER SER SER LEU TYR ASP ALA GLN GLY SEQRES 6 A 226 ALA PRO LYS GLU LYS THR LYS ASN PRO TRP ASP ALA ARG SEQRES 7 A 226 CYS LYS PHE LYS PHE MSE ASP ARG GLU GLU GLU ILE TRP SEQRES 8 A 226 ILE ASP PHE LYS ALA PHE LYS ILE THR ASN MSE ASP SER SEQRES 9 A 226 ASN PRO ASP ILE GLY THR PRO ASN LYS ILE VAL LYS PHE SEQRES 10 A 226 ILE HIS GLU GLY ASN PHE TYR LEU VAL PHE VAL LEU VAL SEQRES 11 A 226 TYR TYR GLU SER LYS GLN ASP GLY VAL GLU PHE VAL LYS SEQRES 12 A 226 TYR ASN ASN ASP TYR LYS LYS VAL TYR LEU LEU LYS ASP SEQRES 13 A 226 VAL ASN GLU SER PHE ARG ILE ASN PRO LYS PRO GLN MSE SEQRES 14 A 226 GLN VAL ASN ILE ALA ALA GLU PRO THR TYR ARG THR ARG SEQRES 15 A 226 GLU GLU PHE ILE HIS PHE PHE VAL LYS LYS TRP LYS GLU SEQRES 16 A 226 SER PHE GLU ARG GLN ILE LYS SER LEU GLU LYS LYS GLU SEQRES 17 A 226 ILE MSE LEU LYS ASP LEU GLU ASP LYS LEU LYS ASN SER SEQRES 18 A 226 ASN ASP ASN SER ILE SEQRES 1 B 226 MSE ASN PHE LYS LYS TYR GLU GLU ASN LEU VAL ALA SER SEQRES 2 B 226 ILE GLU GLU VAL ILE GLN ARG ILE ILE ASP ASP LYS HIS SEQRES 3 B 226 ARG PRO ASN ILE ILE GLY LYS THR ARG VAL GLY ALA GLU SEQRES 4 B 226 VAL SER ASP TYR LEU GLU ASP GLU PHE VAL LYS TYR ILE SEQRES 5 B 226 SER SER GLY LYS SER SER SER LEU TYR ASP ALA GLN GLY SEQRES 6 B 226 ALA PRO LYS GLU LYS THR LYS ASN PRO TRP ASP ALA ARG SEQRES 7 B 226 CYS LYS PHE LYS PHE MSE ASP ARG GLU GLU GLU ILE TRP SEQRES 8 B 226 ILE ASP PHE LYS ALA PHE LYS ILE THR ASN MSE ASP SER SEQRES 9 B 226 ASN PRO ASP ILE GLY THR PRO ASN LYS ILE VAL LYS PHE SEQRES 10 B 226 ILE HIS GLU GLY ASN PHE TYR LEU VAL PHE VAL LEU VAL SEQRES 11 B 226 TYR TYR GLU SER LYS GLN ASP GLY VAL GLU PHE VAL LYS SEQRES 12 B 226 TYR ASN ASN ASP TYR LYS LYS VAL TYR LEU LEU LYS ASP SEQRES 13 B 226 VAL ASN GLU SER PHE ARG ILE ASN PRO LYS PRO GLN MSE SEQRES 14 B 226 GLN VAL ASN ILE ALA ALA GLU PRO THR TYR ARG THR ARG SEQRES 15 B 226 GLU GLU PHE ILE HIS PHE PHE VAL LYS LYS TRP LYS GLU SEQRES 16 B 226 SER PHE GLU ARG GLN ILE LYS SER LEU GLU LYS LYS GLU SEQRES 17 B 226 ILE MSE LEU LYS ASP LEU GLU ASP LYS LEU LYS ASN SER SEQRES 18 B 226 ASN ASP ASN SER ILE SEQRES 1 C 226 MSE ASN PHE LYS LYS TYR GLU GLU ASN LEU VAL ALA SER SEQRES 2 C 226 ILE GLU GLU VAL ILE GLN ARG ILE ILE ASP ASP LYS HIS SEQRES 3 C 226 ARG PRO ASN ILE ILE GLY LYS THR ARG VAL GLY ALA GLU SEQRES 4 C 226 VAL SER ASP TYR LEU GLU ASP GLU PHE VAL LYS TYR ILE SEQRES 5 C 226 SER SER GLY LYS SER SER SER LEU TYR ASP ALA GLN GLY SEQRES 6 C 226 ALA PRO LYS GLU LYS THR LYS ASN PRO TRP ASP ALA ARG SEQRES 7 C 226 CYS LYS PHE LYS PHE MSE ASP ARG GLU GLU GLU ILE TRP SEQRES 8 C 226 ILE ASP PHE LYS ALA PHE LYS ILE THR ASN MSE ASP SER SEQRES 9 C 226 ASN PRO ASP ILE GLY THR PRO ASN LYS ILE VAL LYS PHE SEQRES 10 C 226 ILE HIS GLU GLY ASN PHE TYR LEU VAL PHE VAL LEU VAL SEQRES 11 C 226 TYR TYR GLU SER LYS GLN ASP GLY VAL GLU PHE VAL LYS SEQRES 12 C 226 TYR ASN ASN ASP TYR LYS LYS VAL TYR LEU LEU LYS ASP SEQRES 13 C 226 VAL ASN GLU SER PHE ARG ILE ASN PRO LYS PRO GLN MSE SEQRES 14 C 226 GLN VAL ASN ILE ALA ALA GLU PRO THR TYR ARG THR ARG SEQRES 15 C 226 GLU GLU PHE ILE HIS PHE PHE VAL LYS LYS TRP LYS GLU SEQRES 16 C 226 SER PHE GLU ARG GLN ILE LYS SER LEU GLU LYS LYS GLU SEQRES 17 C 226 ILE MSE LEU LYS ASP LEU GLU ASP LYS LEU LYS ASN SER SEQRES 18 C 226 ASN ASP ASN SER ILE SEQRES 1 D 226 MSE ASN PHE LYS LYS TYR GLU GLU ASN LEU VAL ALA SER SEQRES 2 D 226 ILE GLU GLU VAL ILE GLN ARG ILE ILE ASP ASP LYS HIS SEQRES 3 D 226 ARG PRO ASN ILE ILE GLY LYS THR ARG VAL GLY ALA GLU SEQRES 4 D 226 VAL SER ASP TYR LEU GLU ASP GLU PHE VAL LYS TYR ILE SEQRES 5 D 226 SER SER GLY LYS SER SER SER LEU TYR ASP ALA GLN GLY SEQRES 6 D 226 ALA PRO LYS GLU LYS THR LYS ASN PRO TRP ASP ALA ARG SEQRES 7 D 226 CYS LYS PHE LYS PHE MSE ASP ARG GLU GLU GLU ILE TRP SEQRES 8 D 226 ILE ASP PHE LYS ALA PHE LYS ILE THR ASN MSE ASP SER SEQRES 9 D 226 ASN PRO ASP ILE GLY THR PRO ASN LYS ILE VAL LYS PHE SEQRES 10 D 226 ILE HIS GLU GLY ASN PHE TYR LEU VAL PHE VAL LEU VAL SEQRES 11 D 226 TYR TYR GLU SER LYS GLN ASP GLY VAL GLU PHE VAL LYS SEQRES 12 D 226 TYR ASN ASN ASP TYR LYS LYS VAL TYR LEU LEU LYS ASP SEQRES 13 D 226 VAL ASN GLU SER PHE ARG ILE ASN PRO LYS PRO GLN MSE SEQRES 14 D 226 GLN VAL ASN ILE ALA ALA GLU PRO THR TYR ARG THR ARG SEQRES 15 D 226 GLU GLU PHE ILE HIS PHE PHE VAL LYS LYS TRP LYS GLU SEQRES 16 D 226 SER PHE GLU ARG GLN ILE LYS SER LEU GLU LYS LYS GLU SEQRES 17 D 226 ILE MSE LEU LYS ASP LEU GLU ASP LYS LEU LYS ASN SER SEQRES 18 D 226 ASN ASP ASN SER ILE SEQRES 1 H 27 DG DG DG DC DG DG DA DG DG DC DA DT DT SEQRES 2 H 27 DT DA DA DA DT DG DC DC DG DC DG DC DG SEQRES 3 H 27 DG SEQRES 1 I 27 DC DC DC DG DC DG DC DG DG DC DA DT DT SEQRES 2 I 27 DT DA DA DA DT DG DC DC DT DC DC DG DC SEQRES 3 I 27 DC SEQRES 1 J 27 DG DG DG DC DG DG DA DG DG DC DA DT DT SEQRES 2 J 27 DT DA DA DA DT DG DC DC DG DC DG DC DG SEQRES 3 J 27 DG SEQRES 1 K 27 DC DC DC DG DC DG DC DG DG DC DA DT DT SEQRES 2 K 27 DT DA DA DA DT DG DC DC DT DC DC DG DC SEQRES 3 K 27 DC HET MSE A 84 8 HET MSE A 102 8 HET MSE A 169 8 HET MSE A 210 8 HET MSE B 84 8 HET MSE B 102 8 HET MSE B 169 8 HET MSE B 210 8 HET MSE C 84 8 HET MSE C 102 8 HET MSE C 169 8 HET MSE C 210 8 HET MSE D 84 8 HET MSE D 102 8 HET MSE D 169 8 HET MSE D 210 8 HET CA A 301 1 HET EDO A 302 4 HET EDO A 303 4 HET EDO A 304 4 HET EDO A 305 4 HET CA B 301 1 HET ACT B 302 4 HET CA C 301 1 HET CA D 301 1 HET EDO D 302 4 HET EDO H 101 4 HETNAM MSE SELENOMETHIONINE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM ACT ACETATE ION HETSYN EDO ETHYLENE GLYCOL FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 9 CA 4(CA 2+) FORMUL 10 EDO 6(C2 H6 O2) FORMUL 15 ACT C2 H3 O2 1- FORMUL 20 HOH *212(H2 O) HELIX 1 AA1 ASN A 2 LYS A 25 1 24 HELIX 2 AA2 VAL A 36 SER A 54 1 19 HELIX 3 AA3 PRO A 111 GLU A 120 1 10 HELIX 4 AA4 LYS A 155 VAL A 157 5 3 HELIX 5 AA5 THR A 181 ILE A 226 1 46 HELIX 6 AA6 PHE B 3 LYS B 25 1 23 HELIX 7 AA7 VAL B 36 SER B 54 1 19 HELIX 8 AA8 THR B 110 GLU B 120 1 11 HELIX 9 AA9 LYS B 155 VAL B 157 5 3 HELIX 10 AB1 THR B 181 ILE B 226 1 46 HELIX 11 AB2 PHE C 3 LYS C 25 1 23 HELIX 12 AB3 VAL C 36 SER C 54 1 19 HELIX 13 AB4 PRO C 111 GLU C 120 1 10 HELIX 14 AB5 LYS C 155 VAL C 157 5 3 HELIX 15 AB6 THR C 181 ILE C 226 1 46 HELIX 16 AB7 PHE D 3 LYS D 25 1 23 HELIX 17 AB8 VAL D 36 SER D 54 1 19 HELIX 18 AB9 THR D 110 GLU D 120 1 11 HELIX 19 AC1 LYS D 155 VAL D 157 5 3 HELIX 20 AC2 THR D 181 ILE D 226 1 46 SHEET 1 AA1 5 LEU A 60 GLY A 65 0 SHEET 2 AA1 5 ALA A 77 PHE A 83 -1 O LYS A 80 N TYR A 61 SHEET 3 AA1 5 ARG A 86 LYS A 98 -1 O ILE A 92 N ALA A 77 SHEET 4 AA1 5 TYR A 124 LYS A 135 1 O VAL A 126 N TRP A 91 SHEET 5 AA1 5 GLY A 138 PHE A 141 -1 O GLY A 138 N LYS A 135 SHEET 1 AA2 5 LEU A 60 GLY A 65 0 SHEET 2 AA2 5 ALA A 77 PHE A 83 -1 O LYS A 80 N TYR A 61 SHEET 3 AA2 5 ARG A 86 LYS A 98 -1 O ILE A 92 N ALA A 77 SHEET 4 AA2 5 TYR A 124 LYS A 135 1 O VAL A 126 N TRP A 91 SHEET 5 AA2 5 LYS A 149 LEU A 153 -1 O LYS A 150 N LEU A 129 SHEET 1 AA3 2 ARG A 162 ASN A 164 0 SHEET 2 AA3 2 GLN A 168 GLN A 170 -1 O GLN A 168 N ASN A 164 SHEET 1 AA4 5 LEU B 60 GLY B 65 0 SHEET 2 AA4 5 ALA B 77 PHE B 83 -1 O LYS B 80 N TYR B 61 SHEET 3 AA4 5 ARG B 86 LYS B 98 -1 O ILE B 92 N ALA B 77 SHEET 4 AA4 5 TYR B 124 LYS B 135 1 O VAL B 126 N TRP B 91 SHEET 5 AA4 5 GLY B 138 PHE B 141 -1 O GLY B 138 N LYS B 135 SHEET 1 AA5 5 LEU B 60 GLY B 65 0 SHEET 2 AA5 5 ALA B 77 PHE B 83 -1 O LYS B 80 N TYR B 61 SHEET 3 AA5 5 ARG B 86 LYS B 98 -1 O ILE B 92 N ALA B 77 SHEET 4 AA5 5 TYR B 124 LYS B 135 1 O VAL B 126 N TRP B 91 SHEET 5 AA5 5 LYS B 149 LEU B 153 -1 O TYR B 152 N PHE B 127 SHEET 1 AA6 2 ARG B 162 ASN B 164 0 SHEET 2 AA6 2 GLN B 168 GLN B 170 -1 O GLN B 168 N ASN B 164 SHEET 1 AA7 5 LEU C 60 GLY C 65 0 SHEET 2 AA7 5 ALA C 77 PHE C 83 -1 O LYS C 80 N TYR C 61 SHEET 3 AA7 5 ARG C 86 LYS C 98 -1 O ILE C 92 N ALA C 77 SHEET 4 AA7 5 LEU C 125 LYS C 135 1 O VAL C 126 N TRP C 91 SHEET 5 AA7 5 GLY C 138 PHE C 141 -1 O GLY C 138 N LYS C 135 SHEET 1 AA8 5 LEU C 60 GLY C 65 0 SHEET 2 AA8 5 ALA C 77 PHE C 83 -1 O LYS C 80 N TYR C 61 SHEET 3 AA8 5 ARG C 86 LYS C 98 -1 O ILE C 92 N ALA C 77 SHEET 4 AA8 5 LEU C 125 LYS C 135 1 O VAL C 126 N TRP C 91 SHEET 5 AA8 5 LYS C 149 LEU C 153 -1 O LYS C 150 N LEU C 129 SHEET 1 AA9 2 ARG C 162 ASN C 164 0 SHEET 2 AA9 2 GLN C 168 GLN C 170 -1 O GLN C 168 N ASN C 164 SHEET 1 AB1 5 LEU D 60 GLY D 65 0 SHEET 2 AB1 5 ALA D 77 PHE D 83 -1 O LYS D 80 N TYR D 61 SHEET 3 AB1 5 ARG D 86 LYS D 98 -1 O ILE D 92 N ALA D 77 SHEET 4 AB1 5 LEU D 125 LYS D 135 1 O VAL D 126 N TRP D 91 SHEET 5 AB1 5 GLY D 138 PHE D 141 -1 O GLY D 138 N LYS D 135 SHEET 1 AB2 5 LEU D 60 GLY D 65 0 SHEET 2 AB2 5 ALA D 77 PHE D 83 -1 O LYS D 80 N TYR D 61 SHEET 3 AB2 5 ARG D 86 LYS D 98 -1 O ILE D 92 N ALA D 77 SHEET 4 AB2 5 LEU D 125 LYS D 135 1 O VAL D 126 N TRP D 91 SHEET 5 AB2 5 LYS D 149 LEU D 153 -1 O LYS D 150 N LEU D 129 SHEET 1 AB3 2 ARG D 162 ASN D 164 0 SHEET 2 AB3 2 GLN D 168 GLN D 170 -1 O GLN D 168 N ASN D 164 LINK OD2 ASP A 76 CA CA A 301 1555 1555 2.58 LINK C PHE A 83 N MSE A 84 1555 1555 1.35 LINK C MSE A 84 N ASP A 85 1555 1555 1.35 LINK OD1 ASP A 93 CA CA A 301 1555 1555 2.21 LINK O PHE A 94 CA CA A 301 1555 1555 2.43 LINK C ASN A 101 N MSE A 102 1555 1555 1.32 LINK C MSE A 102 N ASP A 103 1555 1555 1.32 LINK C GLN A 168 N MSE A 169 1555 1555 1.31 LINK C MSE A 169 N GLN A 170 1555 1555 1.33 LINK C ILE A 209 N MSE A 210 1555 1555 1.32 LINK C MSE A 210 N LEU A 211 1555 1555 1.33 LINK OD2 ASP B 76 CA CA B 301 1555 1555 2.46 LINK C PHE B 83 N MSE B 84 1555 1555 1.35 LINK C MSE B 84 N ASP B 85 1555 1555 1.34 LINK OD1 ASP B 93 CA CA B 301 1555 1555 2.28 LINK O PHE B 94 CA CA B 301 1555 1555 2.33 LINK C ASN B 101 N MSE B 102 1555 1555 1.32 LINK C MSE B 102 N ASP B 103 1555 1555 1.34 LINK C GLN B 168 N MSE B 169 1555 1555 1.32 LINK C MSE B 169 N GLN B 170 1555 1555 1.32 LINK C ILE B 209 N MSE B 210 1555 1555 1.32 LINK C MSE B 210 N LEU B 211 1555 1555 1.32 LINK OD2 ASP C 76 CA CA C 301 1555 1555 2.48 LINK C PHE C 83 N MSE C 84 1555 1555 1.35 LINK C MSE C 84 N ASP C 85 1555 1555 1.33 LINK OD1 ASP C 93 CA CA C 301 1555 1555 2.27 LINK O PHE C 94 CA CA C 301 1555 1555 2.48 LINK C ASN C 101 N MSE C 102 1555 1555 1.33 LINK C MSE C 102 N ASP C 103 1555 1555 1.34 LINK C GLN C 168 N MSE C 169 1555 1555 1.34 LINK C MSE C 169 N GLN C 170 1555 1555 1.33 LINK C ILE C 209 N MSE C 210 1555 1555 1.32 LINK C MSE C 210 N LEU C 211 1555 1555 1.33 LINK OD2 ASP D 76 CA CA D 301 1555 1555 2.54 LINK C PHE D 83 N MSE D 84 1555 1555 1.35 LINK C MSE D 84 N ASP D 85 1555 1555 1.34 LINK OD1 ASP D 93 CA CA D 301 1555 1555 2.16 LINK O PHE D 94 CA CA D 301 1555 1555 2.37 LINK C ASN D 101 N MSE D 102 1555 1555 1.33 LINK C MSE D 102 N ASP D 103 1555 1555 1.33 LINK C GLN D 168 N MSE D 169 1555 1555 1.32 LINK C MSE D 169 N GLN D 170 1555 1555 1.32 LINK C ILE D 209 N MSE D 210 1555 1555 1.32 LINK C MSE D 210 N LEU D 211 1555 1555 1.32 LINK OP1A DA H 25 CA CA A 301 1555 1555 2.28 LINK OP1A DA I 25 CA CA B 301 1555 1555 2.40 LINK OP1A DA J 25 CA CA C 301 1555 1555 2.52 LINK OP2B DA J 25 CA CA C 301 1555 1555 3.05 LINK OP1A DA K 25 CA CA D 301 1555 1555 2.05 LINK CA CA A 301 O HOH H 202 1555 1555 2.50 LINK CA CA A 301 O HOH A 439 1555 1555 2.25 LINK CA CA B 301 O HOH B 407 1555 1555 2.52 LINK CA CA B 301 O HOH B 408 1555 1555 2.24 LINK CA CA C 301 O HOH C 409 1555 1555 2.44 LINK CA CA C 301 O HOH C 413 1555 1555 2.04 LINK CA CA D 301 O HOH D 421 1555 1555 2.08 LINK CA CA D 301 O HOH D 409 1555 1555 2.38 CISPEP 1 LYS A 166 PRO A 167 0 6.79 CISPEP 2 LYS B 166 PRO B 167 0 0.63 CISPEP 3 LYS C 166 PRO C 167 0 3.34 CISPEP 4 LYS D 166 PRO D 167 0 -6.94 SITE 1 AC1 6 ASP A 76 ASP A 93 PHE A 94 HOH A 439 SITE 2 AC1 6 DA H 25 HOH H 202 SITE 1 AC2 5 GLY A 65 ALA A 66 PRO A 67 TYR D 61 SITE 2 AC2 5 ASP D 62 SITE 1 AC3 4 GLU A 159 SER A 160 DG I 9 DC I 10 SITE 1 AC4 5 SER A 160 ARG A 162 HOH A 427 DG I 9 SITE 2 AC4 5 DC I 10 SITE 1 AC5 2 GLU A 69 LYS D 82 SITE 1 AC6 6 ASP B 76 ASP B 93 PHE B 94 HOH B 407 SITE 2 AC6 6 HOH B 408 DA I 25 SITE 1 AC7 1 PHE B 141 SITE 1 AC8 6 ASP C 76 ASP C 93 PHE C 94 HOH C 409 SITE 2 AC8 6 HOH C 413 DA J 25 SITE 1 AC9 6 ASP D 76 ASP D 93 PHE D 94 HOH D 409 SITE 2 AC9 6 HOH D 421 DA K 25 SITE 1 AD1 5 GLU D 159 SER D 160 LYS D 192 HOH D 414 SITE 2 AD1 5 DC J 10 SITE 1 AD2 5 LYS A 72 DA H 11 DT H 12 DG I 29 SITE 2 AD2 5 DC I 30 CRYST1 109.856 57.058 112.785 90.00 108.22 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009103 0.000000 0.002996 0.00000 SCALE2 0.000000 0.017526 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009334 0.00000 MASTER 701 0 27 20 48 0 19 6 0 0 0 84 END