HEADER OXIDOREDUCTASE 27-SEP-16 5TFZ TITLE CRYSTAL STRUCTURE OF THE DIMETHYLSULFONIOPROPIONATE (DMSP) LYASE DDDK TITLE 2 COMPLEXED WITH NICKEL AND DIACRYLATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHYLSULFONIOPROPIONATE LYASE DDDK; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 OTHER_DETAILS: RESIDUES 1-20 IN THE SEQUENCE ARE FROM THE VECTOR FOR COMPND 6 A HIS-TAG. SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PELAGIBACTER UBIQUE (STRAIN HTCC1062); SOURCE 3 ORGANISM_TAXID: 335992; SOURCE 4 STRAIN: HTCC1062; SOURCE 5 GENE: SAR11_0394; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DMSP LYASE, CUPIN, NICKEL DEPENDENT, METAL BINDING, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.J.SCHNICKER,M.DEY REVDAT 2 21-JUN-17 5TFZ 1 JRNL REVDAT 1 14-JUN-17 5TFZ 0 JRNL AUTH N.J.SCHNICKER,S.M.DE SILVA,J.D.TODD,M.DEY JRNL TITL STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO JRNL TITL 2 DIMETHYLSULFONIOPROPIONATE CLEAVAGE BY COFACTOR-BOUND DDDK JRNL TITL 3 FROM THE PROLIFIC MARINE BACTERIUM PELAGIBACTER. JRNL REF BIOCHEMISTRY V. 56 2873 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28511016 JRNL DOI 10.1021/ACS.BIOCHEM.7B00099 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 59.17 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 27455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1371 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 59.1889 - 4.7393 1.00 2601 151 0.1794 0.2263 REMARK 3 2 4.7393 - 3.7619 1.00 2611 155 0.1400 0.1994 REMARK 3 3 3.7619 - 3.2864 1.00 2586 133 0.1501 0.2025 REMARK 3 4 3.2864 - 2.9860 1.00 2622 158 0.1662 0.2143 REMARK 3 5 2.9860 - 2.7720 1.00 2577 149 0.1803 0.2402 REMARK 3 6 2.7720 - 2.6085 1.00 2588 160 0.1813 0.1999 REMARK 3 7 2.6085 - 2.4779 1.00 2666 98 0.1932 0.2782 REMARK 3 8 2.4779 - 2.3700 1.00 2630 96 0.2026 0.2986 REMARK 3 9 2.3700 - 2.2788 1.00 2619 123 0.2048 0.2354 REMARK 3 10 2.2788 - 2.2001 0.98 2584 148 0.2177 0.2845 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.260 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.33 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 2085 REMARK 3 ANGLE : 1.081 2821 REMARK 3 CHIRALITY : 0.063 299 REMARK 3 PLANARITY : 0.006 363 REMARK 3 DIHEDRAL : 13.929 1188 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 0 THROUGH 30 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4350 -25.5602 3.0223 REMARK 3 T TENSOR REMARK 3 T11: 0.1571 T22: 0.2035 REMARK 3 T33: 0.2137 T12: -0.0162 REMARK 3 T13: 0.0330 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 0.7118 L22: 0.2965 REMARK 3 L33: 0.5144 L12: -0.3816 REMARK 3 L13: 0.4132 L23: -0.1170 REMARK 3 S TENSOR REMARK 3 S11: 0.0650 S12: -0.1262 S13: -0.0779 REMARK 3 S21: -0.2226 S22: -0.0057 S23: 0.1233 REMARK 3 S31: 0.1134 S32: -0.0219 S33: 0.0858 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 31 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4819 -27.4578 13.6878 REMARK 3 T TENSOR REMARK 3 T11: 0.1818 T22: 0.1425 REMARK 3 T33: 0.1591 T12: -0.0133 REMARK 3 T13: -0.0152 T23: 0.0195 REMARK 3 L TENSOR REMARK 3 L11: 0.5133 L22: 0.9479 REMARK 3 L33: 0.9640 L12: 0.0575 REMARK 3 L13: -0.4793 L23: -0.0877 REMARK 3 S TENSOR REMARK 3 S11: -0.0812 S12: 0.0938 S13: -0.1185 REMARK 3 S21: -0.1176 S22: 0.1065 S23: -0.0187 REMARK 3 S31: 0.3315 S32: -0.0641 S33: 0.0323 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 113 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5685 -32.0848 16.6248 REMARK 3 T TENSOR REMARK 3 T11: 0.2243 T22: 0.2520 REMARK 3 T33: 0.3569 T12: 0.0588 REMARK 3 T13: 0.0160 T23: 0.0344 REMARK 3 L TENSOR REMARK 3 L11: 2.8550 L22: 1.2136 REMARK 3 L33: 1.6794 L12: 1.6744 REMARK 3 L13: -0.0672 L23: 0.5792 REMARK 3 S TENSOR REMARK 3 S11: 0.0747 S12: -0.6098 S13: -0.5308 REMARK 3 S21: -0.0497 S22: -0.3741 S23: -0.6186 REMARK 3 S31: 0.4347 S32: 0.2299 S33: -0.0729 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID -4 THROUGH 10 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9796 -21.2095 25.6896 REMARK 3 T TENSOR REMARK 3 T11: 0.1546 T22: 0.2215 REMARK 3 T33: 0.2104 T12: 0.0417 REMARK 3 T13: 0.0448 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 0.3005 L22: 1.4084 REMARK 3 L33: 0.0854 L12: -0.2113 REMARK 3 L13: -0.0434 L23: 0.3451 REMARK 3 S TENSOR REMARK 3 S11: 0.1348 S12: -0.1061 S13: -0.1215 REMARK 3 S21: 0.3777 S22: -0.1312 S23: 0.3762 REMARK 3 S31: -0.0339 S32: 0.1422 S33: 0.0186 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 11 THROUGH 47 ) REMARK 3 ORIGIN FOR THE GROUP (A): -8.7838 -7.2215 21.8347 REMARK 3 T TENSOR REMARK 3 T11: 0.2203 T22: 0.1988 REMARK 3 T33: 0.1876 T12: 0.0043 REMARK 3 T13: 0.0008 T23: -0.0135 REMARK 3 L TENSOR REMARK 3 L11: 0.2504 L22: 0.3389 REMARK 3 L33: 0.5428 L12: 0.2312 REMARK 3 L13: 0.1033 L23: 0.3418 REMARK 3 S TENSOR REMARK 3 S11: 0.0199 S12: -0.1663 S13: 0.0682 REMARK 3 S21: 0.2586 S22: -0.0758 S23: 0.1294 REMARK 3 S31: -0.2278 S32: -0.0228 S33: -0.0005 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 48 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.4835 -5.2677 13.0646 REMARK 3 T TENSOR REMARK 3 T11: 0.2163 T22: 0.1241 REMARK 3 T33: 0.1952 T12: 0.0035 REMARK 3 T13: -0.0098 T23: -0.0278 REMARK 3 L TENSOR REMARK 3 L11: 0.1969 L22: 0.0831 REMARK 3 L33: 0.4419 L12: 0.1354 REMARK 3 L13: -0.2183 L23: -0.1550 REMARK 3 S TENSOR REMARK 3 S11: 0.0290 S12: -0.1212 S13: -0.0119 REMARK 3 S21: 0.0205 S22: -0.0300 S23: 0.0389 REMARK 3 S31: -0.0666 S32: 0.0973 S33: -0.0012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 69 THROUGH 99 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.9675 -6.1073 6.5576 REMARK 3 T TENSOR REMARK 3 T11: 0.1426 T22: 0.1757 REMARK 3 T33: 0.1476 T12: -0.0091 REMARK 3 T13: -0.0132 T23: -0.0083 REMARK 3 L TENSOR REMARK 3 L11: 0.1104 L22: 0.3214 REMARK 3 L33: 0.2959 L12: 0.1471 REMARK 3 L13: -0.1829 L23: -0.1797 REMARK 3 S TENSOR REMARK 3 S11: -0.0370 S12: 0.0804 S13: 0.0355 REMARK 3 S21: -0.1939 S22: -0.0606 S23: 0.1134 REMARK 3 S31: -0.0341 S32: 0.1017 S33: 0.0003 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 100 THROUGH 112 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.8431 -6.2734 10.4415 REMARK 3 T TENSOR REMARK 3 T11: 0.1942 T22: 0.1586 REMARK 3 T33: 0.2307 T12: 0.0110 REMARK 3 T13: -0.0366 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.1999 L22: 0.1987 REMARK 3 L33: 0.1380 L12: 0.0785 REMARK 3 L13: 0.1806 L23: 0.0628 REMARK 3 S TENSOR REMARK 3 S11: -0.1622 S12: -0.2578 S13: 0.0526 REMARK 3 S21: 0.2255 S22: 0.1787 S23: 0.0606 REMARK 3 S31: -0.2198 S32: -0.1684 S33: -0.0045 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 113 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 4.0337 -7.4002 24.0854 REMARK 3 T TENSOR REMARK 3 T11: 0.2712 T22: 0.2473 REMARK 3 T33: 0.2068 T12: -0.0107 REMARK 3 T13: -0.0361 T23: -0.0237 REMARK 3 L TENSOR REMARK 3 L11: 0.1445 L22: 0.1157 REMARK 3 L33: 0.1047 L12: 0.0024 REMARK 3 L13: 0.0386 L23: 0.1115 REMARK 3 S TENSOR REMARK 3 S11: 0.2265 S12: -0.1262 S13: -0.0322 REMARK 3 S21: 0.3092 S22: -0.1984 S23: -0.2130 REMARK 3 S31: -0.0744 S32: 0.2406 S33: -0.0010 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5TFZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224185. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-SEP-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CMOS REMARK 200 DETECTOR MANUFACTURER : RDI CMOS_8M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14946 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 59.170 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.600 REMARK 200 R MERGE (I) : 0.15000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 5.60 REMARK 200 R MERGE FOR SHELL (I) : 0.61700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.71 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M POTASSIUM THIOCYANATE, 30% PEG REMARK 280 MME 2000, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.67600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 59.16750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.33350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 59.16750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.67600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 27.33350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10860 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 GLN A 127 REMARK 465 LYS A 128 REMARK 465 SER A 129 REMARK 465 GLY A 130 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 GLN B 127 REMARK 465 LYS B 128 REMARK 465 SER B 129 REMARK 465 GLY B 130 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 19 CG CD OE1 OE2 REMARK 470 LYS A 20 CG CD CE NZ REMARK 470 LYS A 70 CD CE NZ REMARK 470 LYS A 78 CG CD CE NZ REMARK 470 LYS A 83 CE NZ REMARK 470 LYS A 99 CE NZ REMARK 470 LYS A 103 CD CE NZ REMARK 470 LYS A 126 CG CD CE NZ REMARK 470 GLU B 14 CD OE1 OE2 REMARK 470 LYS B 20 CG CD CE NZ REMARK 470 LYS B 70 CE NZ REMARK 470 LYS B 83 CE NZ REMARK 470 LYS B 103 CD CE NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OH TYR B 109 O4 PEG B 203 2.16 REMARK 500 O HOH A 321 O HOH A 361 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 75 79.84 -100.73 REMARK 500 LYS A 84 131.13 -38.37 REMARK 500 ASP B 31 130.56 -170.67 REMARK 500 PRO B 113 48.95 -76.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 201 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 56 NE2 REMARK 620 2 HIS A 58 NE2 112.4 REMARK 620 3 GLU A 62 OE2 174.7 71.3 REMARK 620 4 HIS A 96 NE2 86.3 104.2 89.1 REMARK 620 5 7BC A 202 O1 86.5 154.1 91.3 94.2 REMARK 620 6 7BC A 202 O 112.0 98.0 70.6 143.2 57.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 204 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 56 NE2 REMARK 620 2 HIS B 58 NE2 112.3 REMARK 620 3 GLU B 62 OE2 166.5 81.2 REMARK 620 4 HIS B 96 NE2 89.3 118.0 84.9 REMARK 620 5 7BC B 205 O1 95.5 90.3 83.0 147.0 REMARK 620 6 7BC B 205 O 87.2 146.5 80.4 87.9 59.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BC A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue PEG B 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 7BC B 205 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TG0 RELATED DB: PDB DBREF 5TFZ A 1 130 UNP Q4FNM4 Q4FNM4_PELUB 1 130 DBREF 5TFZ B 1 130 UNP Q4FNM4 Q4FNM4_PELUB 1 130 SEQADV 5TFZ MET A -19 UNP Q4FNM4 INITIATING METHIONINE SEQADV 5TFZ GLY A -18 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER A -17 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER A -16 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS A -15 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS A -14 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS A -13 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS A -12 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS A -11 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS A -10 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER A -9 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER A -8 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ GLY A -7 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ LEU A -6 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ VAL A -5 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ PRO A -4 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ ARG A -3 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ GLY A -2 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER A -1 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS A 0 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ MET B -19 UNP Q4FNM4 INITIATING METHIONINE SEQADV 5TFZ GLY B -18 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER B -17 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER B -16 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS B -15 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS B -14 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS B -13 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS B -12 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS B -11 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS B -10 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER B -9 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER B -8 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ GLY B -7 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ LEU B -6 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ VAL B -5 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ PRO B -4 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ ARG B -3 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ GLY B -2 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ SER B -1 UNP Q4FNM4 EXPRESSION TAG SEQADV 5TFZ HIS B 0 UNP Q4FNM4 EXPRESSION TAG SEQRES 1 A 150 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 150 LEU VAL PRO ARG GLY SER HIS MET ILE PHE VAL LYS ASN SEQRES 3 A 150 LEU ALA SER VAL LEU SER GLN GLU TRP SER SER THR GLU SEQRES 4 A 150 LYS TYR PRO GLY VAL ARG TRP LYS PHE LEU ILE ASP ALA SEQRES 5 A 150 ASP PHE ASP GLY SER SER GLY LEU SER LEU GLY PHE ALA SEQRES 6 A 150 GLU ILE ALA PRO GLY GLY ASP LEU THR LEU HIS TYR HIS SEQRES 7 A 150 SER PRO ALA GLU ILE TYR VAL VAL THR ASN GLY LYS GLY SEQRES 8 A 150 ILE LEU ASN LYS SER GLY LYS LEU GLU THR ILE LYS LYS SEQRES 9 A 150 GLY ASP VAL VAL TYR ILE ALA GLY ASN ALA GLU HIS ALA SEQRES 10 A 150 LEU LYS ASN ASN GLY LYS GLU THR LEU GLU PHE TYR TRP SEQRES 11 A 150 ILE PHE PRO THR ASP ARG PHE SER GLU VAL GLU TYR PHE SEQRES 12 A 150 PRO ALA LYS GLN LYS SER GLY SEQRES 1 B 150 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 150 LEU VAL PRO ARG GLY SER HIS MET ILE PHE VAL LYS ASN SEQRES 3 B 150 LEU ALA SER VAL LEU SER GLN GLU TRP SER SER THR GLU SEQRES 4 B 150 LYS TYR PRO GLY VAL ARG TRP LYS PHE LEU ILE ASP ALA SEQRES 5 B 150 ASP PHE ASP GLY SER SER GLY LEU SER LEU GLY PHE ALA SEQRES 6 B 150 GLU ILE ALA PRO GLY GLY ASP LEU THR LEU HIS TYR HIS SEQRES 7 B 150 SER PRO ALA GLU ILE TYR VAL VAL THR ASN GLY LYS GLY SEQRES 8 B 150 ILE LEU ASN LYS SER GLY LYS LEU GLU THR ILE LYS LYS SEQRES 9 B 150 GLY ASP VAL VAL TYR ILE ALA GLY ASN ALA GLU HIS ALA SEQRES 10 B 150 LEU LYS ASN ASN GLY LYS GLU THR LEU GLU PHE TYR TRP SEQRES 11 B 150 ILE PHE PRO THR ASP ARG PHE SER GLU VAL GLU TYR PHE SEQRES 12 B 150 PRO ALA LYS GLN LYS SER GLY HET NI A 201 1 HET 7BC A 202 10 HET PEG B 201 7 HET PEG B 202 7 HET PEG B 203 7 HET NI B 204 1 HET 7BC B 205 10 HETNAM NI NICKEL (II) ION HETNAM 7BC 3-(ACRYLOYLOXY)PROPANOIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER FORMUL 3 NI 2(NI 2+) FORMUL 4 7BC 2(C6 H8 O4) FORMUL 5 PEG 3(C4 H10 O3) FORMUL 10 HOH *137(H2 O) HELIX 1 AA1 ASN A 6 LEU A 11 5 6 HELIX 2 AA2 ASP A 31 GLY A 36 1 6 HELIX 3 AA3 ARG A 116 VAL A 120 5 5 HELIX 4 AA4 ASN B 6 LEU B 11 5 6 HELIX 5 AA5 ASP B 31 GLY B 36 1 6 HELIX 6 AA6 ARG B 116 VAL B 120 5 5 SHEET 1 AA1 7 ILE A 2 LYS A 5 0 SHEET 2 AA1 7 VAL B 87 ILE B 90 -1 O VAL B 87 N LYS A 5 SHEET 3 AA1 7 GLU B 62 ASN B 68 -1 N GLU B 62 O ILE B 90 SHEET 4 AA1 7 LEU B 106 PHE B 112 -1 O TYR B 109 N VAL B 65 SHEET 5 AA1 7 SER B 41 ILE B 47 -1 N ALA B 45 O PHE B 108 SHEET 6 AA1 7 VAL B 24 ILE B 30 -1 N ILE B 30 O LEU B 42 SHEET 7 AA1 7 SER B 16 SER B 17 -1 N SER B 16 O TRP B 26 SHEET 1 AA2 6 VAL A 24 ILE A 30 0 SHEET 2 AA2 6 SER A 41 ILE A 47 -1 O GLU A 46 N ARG A 25 SHEET 3 AA2 6 LEU A 106 PHE A 112 -1 O PHE A 108 N ALA A 45 SHEET 4 AA2 6 GLU A 62 ASN A 68 -1 N VAL A 65 O TYR A 109 SHEET 5 AA2 6 VAL A 87 ILE A 90 -1 O ILE A 90 N GLU A 62 SHEET 6 AA2 6 ILE B 2 LYS B 5 -1 O LYS B 5 N VAL A 87 SHEET 1 AA3 5 LYS A 78 LYS A 83 0 SHEET 2 AA3 5 LYS A 70 LYS A 75 -1 N LYS A 75 O LYS A 78 SHEET 3 AA3 5 HIS A 96 LYS A 99 -1 O ALA A 97 N ASN A 74 SHEET 4 AA3 5 ASP A 52 TYR A 57 -1 N LEU A 53 O LEU A 98 SHEET 5 AA3 5 PHE A 123 PRO A 124 -1 O PHE A 123 N TYR A 57 SHEET 1 AA4 5 LYS B 78 LYS B 83 0 SHEET 2 AA4 5 LYS B 70 LYS B 75 -1 N LYS B 75 O LYS B 78 SHEET 3 AA4 5 HIS B 96 LYS B 99 -1 O LYS B 99 N ILE B 72 SHEET 4 AA4 5 ASP B 52 TYR B 57 -1 N LEU B 53 O LEU B 98 SHEET 5 AA4 5 PHE B 123 PRO B 124 -1 O PHE B 123 N TYR B 57 LINK NE2 HIS A 56 NI NI A 201 1555 1555 2.69 LINK NE2 HIS A 58 NI NI A 201 1555 1555 2.21 LINK OE2 GLU A 62 NI NI A 201 1555 1555 2.70 LINK NE2 HIS A 96 NI NI A 201 1555 1555 2.35 LINK NE2 HIS B 56 NI NI B 204 1555 1555 2.38 LINK NE2 HIS B 58 NI NI B 204 1555 1555 2.13 LINK OE2 GLU B 62 NI NI B 204 1555 1555 2.71 LINK NE2 HIS B 96 NI NI B 204 1555 1555 2.08 LINK NI NI A 201 O1 7BC A 202 1555 1555 2.26 LINK NI NI A 201 O 7BC A 202 1555 1555 2.35 LINK NI NI B 204 O1 7BC B 205 1555 1555 2.32 LINK NI NI B 204 O 7BC B 205 1555 1555 2.10 SITE 1 AC1 5 HIS A 56 HIS A 58 GLU A 62 HIS A 96 SITE 2 AC1 5 7BC A 202 SITE 1 AC2 10 VAL A 24 TRP A 26 LEU A 53 HIS A 56 SITE 2 AC2 10 HIS A 58 GLU A 62 TYR A 64 HIS A 96 SITE 3 AC2 10 TYR A 122 NI A 201 SITE 1 AC3 7 ARG B -3 GLY B -2 SER B -1 TYR B 122 SITE 2 AC3 7 PHE B 123 PRO B 124 HOH B 310 SITE 1 AC4 6 ASP A 33 PHE A 34 GLY B 102 LYS B 103 SITE 2 AC4 6 HOH B 323 HOH B 331 SITE 1 AC5 7 VAL A 65 VAL A 66 LYS A 84 GLY A 85 SITE 2 AC5 7 THR B 67 LYS B 84 TYR B 109 SITE 1 AC6 5 HIS B 56 HIS B 58 GLU B 62 HIS B 96 SITE 2 AC6 5 7BC B 205 SITE 1 AC7 10 TYR B 21 TRP B 26 LEU B 53 HIS B 56 SITE 2 AC7 10 HIS B 58 GLU B 62 TYR B 64 HIS B 96 SITE 3 AC7 10 TYR B 122 NI B 204 CRYST1 43.352 54.667 118.335 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023067 0.000000 0.000000 0.00000 SCALE2 0.000000 0.018293 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008451 0.00000 MASTER 495 0 7 6 23 0 16 6 0 0 0 24 END