HEADER SPLICING 21-SEP-16 5TEE TITLE CRYSTAL STRUCTURE OF GEMIN5 WD40 REPEATS IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: GEM-ASSOCIATED PROTEIN 5; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GEMIN5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GEMIN5; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFBOH-LIC KEYWDS STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, SPLICING EXPDTA X-RAY DIFFRACTION AUTHOR X.CHAO,W.TEMPEL,C.BIAN,T.CEROVINA,H.HE,J.R.WALKER,A.SEITOVA, AUTHOR 2 C.BOUNTRA,C.H.ARROWSMITH,A.M.EDWARDS,J.MIN,STRUCTURAL GENOMICS AUTHOR 3 CONSORTIUM (SGC) REVDAT 3 10-MAY-17 5TEE 1 AUTHOR REVDAT 2 11-JAN-17 5TEE 1 JRNL REVDAT 1 19-OCT-16 5TEE 0 JRNL AUTH C.XU,H.ISHIKAWA,K.IZUMIKAWA,L.LI,H.HE,Y.NOBE,Y.YAMAUCHI, JRNL AUTH 2 H.M.SHAHJEE,X.H.WU,Y.T.YU,T.ISOBE,N.TAKAHASHI,J.MIN JRNL TITL STRUCTURAL INSIGHTS INTO GEMIN5-GUIDED SELECTION OF JRNL TITL 2 PRE-SNRNAS FOR SNRNP ASSEMBLY. JRNL REF GENES DEV. V. 30 2376 2016 JRNL REFN ISSN 1549-5477 JRNL PMID 27881600 JRNL DOI 10.1101/GAD.288340.116 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0155 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.47 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 88765 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4684 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 330 REMARK 3 BIN FREE R VALUE : 0.3040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5298 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 420 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : -0.60000 REMARK 3 B33 (A**2) : -0.33000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.63000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.084 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.085 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.064 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.992 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.952 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5706 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5214 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7834 ; 1.594 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12065 ; 0.972 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 752 ; 6.512 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;32.549 ;23.745 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 889 ;11.664 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 29 ;16.545 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 866 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6547 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1341 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2838 ; 2.266 ; 2.043 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2837 ; 2.244 ; 2.042 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3565 ; 3.331 ; 3.048 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 MOLECULAR REPLACEMENT SEARCH MODELS WERE BASED ON PDB ENTRIES 3OW8, REMARK 3 2HES, 3DM0 AND MODIFIED USING SCWRL AND THE FFAS03 SERVER. REMARK 3 PROGRAMS PHASER AND MOLREP WERE USED FOR MOLECULAR REPLACEMENT. REMARK 3 ARP/WARP WAS USED FOR MAP IMRPOVEMENT AND AUTOMATED MODEL BUILDING. REMARK 3 GEOMETRY RESTRAINTS FOR THE LIGAND WERE PREPARED WITH PRODRG BASED REMARK 3 ON GTG COORDINATES FROM PDB ENTRY 3HXI. REMARK 3 COOT WAS USED FOR INTERACTIVE MODEL BUILDING. REMARK 3 PHENIX.MOLPROBITY WAS USED FOR GEOMETRY VALIDATION. REMARK 4 REMARK 4 5TEE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000224036. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-AUG-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97918 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.5.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93484 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 48.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.09100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.68 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.80 REMARK 200 R MERGE FOR SHELL (I) : 1.01500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER, MOLREP REMARK 200 STARTING MODEL: FFAS03/SCWRL MODELS BASED ON PDB ENTRIES 3OW8, REMARK 200 2HES, 3DM0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.60 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG4000, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M SODIUM CITRATE, PH 5.5, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 62.20350 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS DID NOT PROVIDE A BIOLOGICAL ASSEMBLY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 980 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 SER A -8 REMARK 465 SER A -7 REMARK 465 GLY A -6 REMARK 465 LEU A -5 REMARK 465 VAL A -4 REMARK 465 PRO A -3 REMARK 465 ARG A -2 REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 GLY A 2 REMARK 465 SER A 213 REMARK 465 ILE A 214 REMARK 465 ASN A 215 REMARK 465 GLN A 216 REMARK 465 GLU A 217 REMARK 465 GLU A 218 REMARK 465 THR A 219 REMARK 465 SER A 220 REMARK 465 GLU A 221 REMARK 465 GLU A 222 REMARK 465 ALA A 223 REMARK 465 GLU A 224 REMARK 465 ILE A 225 REMARK 465 THR A 226 REMARK 465 ASN A 227 REMARK 465 GLY A 228 REMARK 465 ASN A 229 REMARK 465 ALA A 230 REMARK 465 VAL A 231 REMARK 465 ALA A 232 REMARK 465 GLN A 233 REMARK 465 ALA A 234 REMARK 465 PRO A 235 REMARK 465 VAL A 236 REMARK 465 THR A 237 REMARK 465 LYS A 238 REMARK 465 GLU A 490 REMARK 465 GLY A 491 REMARK 465 ASP A 492 REMARK 465 GLY A 723 REMARK 465 LYS A 724 REMARK 465 LYS A 725 REMARK 465 SER A 726 REMARK 465 ILE A 727 REMARK 465 GLU A 728 REMARK 465 LEU A 729 REMARK 465 GLU A 730 REMARK 465 LYS A 731 REMARK 465 LYS A 732 REMARK 465 ARG A 733 REMARK 465 LEU A 734 REMARK 465 SER A 735 REMARK 465 GLN A 736 REMARK 465 PRO A 737 REMARK 465 LYS A 738 REMARK 465 ALA A 739 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 N CB CG CD OE1 NE2 REMARK 470 ARG A 6 NE CZ NH1 NH2 REMARK 470 ARG A 120 NH1 NH2 REMARK 470 LYS A 184 CE NZ REMARK 470 LEU A 212 C O CB CG CD1 CD2 REMARK 470 SER A 257 OG REMARK 470 ARG A 258 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 260 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 271 CG CD CE NZ REMARK 470 ILE A 277 CG1 CG2 CD1 REMARK 470 LYS A 282 CG CD CE NZ REMARK 470 ARG A 284 CG CD NE CZ NH1 NH2 REMARK 470 SER A 316 C O CB OG REMARK 470 TRP A 317 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 317 CZ3 CH2 REMARK 470 ARG A 318 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 320 CD CE NZ REMARK 470 LYS A 349 CD CE NZ REMARK 470 LYS A 413 NZ REMARK 470 LYS A 419 CD CE NZ REMARK 470 LYS A 426 CD CE NZ REMARK 470 LYS A 438 CE NZ REMARK 470 LYS A 460 CE NZ REMARK 470 LYS A 470 CD CE NZ REMARK 470 GLY A 489 C O REMARK 470 ARG A 493 N CB CG CD NE CZ NH1 REMARK 470 ARG A 493 NH2 REMARK 470 LYS A 524 CD CE NZ REMARK 470 LYS A 569 CE NZ REMARK 470 GLN A 593 CD OE1 NE2 REMARK 470 GLU A 595 CG CD OE1 OE2 REMARK 470 LYS A 615 CE NZ REMARK 470 GLU A 623 CD OE1 OE2 REMARK 470 GLU A 630 CD OE1 OE2 REMARK 470 GLU A 673 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 190 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 33 -119.11 50.58 REMARK 500 ARG A 66 126.86 -35.49 REMARK 500 ILE A 149 -67.94 -98.30 REMARK 500 GLU A 197 132.14 -39.53 REMARK 500 GLN A 249 10.02 80.87 REMARK 500 VAL A 425 -74.92 -95.97 REMARK 500 VAL A 425 -81.26 -95.97 REMARK 500 LYS A 426 -58.77 71.85 REMARK 500 LYS A 514 59.50 -144.21 REMARK 500 GLN A 576 -51.26 -136.77 REMARK 500 SER A 604 -168.31 -129.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 839 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 106 O REMARK 620 2 HIS A 108 O 91.6 REMARK 620 3 HOH A1265 O 84.8 95.1 REMARK 620 4 HOH A1031 O 89.0 69.5 163.3 REMARK 620 5 HOH A1290 O 173.6 91.6 89.4 97.3 REMARK 620 6 HOH A1284 O 88.6 173.9 90.9 104.5 88.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 840 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ARG A 679 O REMARK 620 2 HIS A 681 O 85.3 REMARK 620 3 HOH A1066 O 90.1 84.8 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 839 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NA A 840 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5TEF RELATED DB: PDB DBREF 5TEE A 1 739 UNP Q8TEQ6 GEMI5_HUMAN 1 739 SEQADV 5TEE MET A -18 UNP Q8TEQ6 INITIATING METHIONINE SEQADV 5TEE GLY A -17 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE SER A -16 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE SER A -15 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE HIS A -14 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE HIS A -13 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE HIS A -12 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE HIS A -11 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE HIS A -10 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE HIS A -9 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE SER A -8 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE SER A -7 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE GLY A -6 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE LEU A -5 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE VAL A -4 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE PRO A -3 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE ARG A -2 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE GLY A -1 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE SER A 0 UNP Q8TEQ6 EXPRESSION TAG SEQADV 5TEE GLN A 682 UNP Q8TEQ6 ARG 682 NATURAL VARIANT SEQRES 1 A 758 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 758 LEU VAL PRO ARG GLY SER MET GLY GLN GLU PRO ARG THR SEQRES 3 A 758 LEU PRO PRO SER PRO ASN TRP TYR CYS ALA ARG CYS SER SEQRES 4 A 758 ASP ALA VAL PRO GLY GLY LEU PHE GLY PHE ALA ALA ARG SEQRES 5 A 758 THR SER VAL PHE LEU VAL ARG VAL GLY PRO GLY ALA GLY SEQRES 6 A 758 GLU SER PRO GLY THR PRO PRO PHE ARG VAL ILE GLY GLU SEQRES 7 A 758 LEU VAL GLY HIS THR GLU ARG VAL SER GLY PHE THR PHE SEQRES 8 A 758 SER HIS HIS PRO GLY GLN TYR ASN LEU CYS ALA THR SER SEQRES 9 A 758 SER ASP ASP GLY THR VAL LYS ILE TRP ASP VAL GLU THR SEQRES 10 A 758 LYS THR VAL VAL THR GLU HIS ALA LEU HIS GLN HIS THR SEQRES 11 A 758 ILE SER THR LEU HIS TRP SER PRO ARG VAL LYS ASP LEU SEQRES 12 A 758 ILE VAL SER GLY ASP GLU LYS GLY VAL VAL PHE CYS TYR SEQRES 13 A 758 TRP PHE ASN ARG ASN ASP SER GLN HIS LEU PHE ILE GLU SEQRES 14 A 758 PRO ARG THR ILE PHE CYS LEU THR CYS SER PRO HIS HIS SEQRES 15 A 758 GLU ASP LEU VAL ALA ILE GLY TYR LYS ASP GLY ILE VAL SEQRES 16 A 758 VAL ILE ILE ASP ILE SER LYS LYS GLY GLU VAL ILE HIS SEQRES 17 A 758 ARG LEU ARG GLY HIS ASP ASP GLU ILE HIS SER ILE ALA SEQRES 18 A 758 TRP CYS PRO LEU PRO GLY GLU ASP CYS LEU SER ILE ASN SEQRES 19 A 758 GLN GLU GLU THR SER GLU GLU ALA GLU ILE THR ASN GLY SEQRES 20 A 758 ASN ALA VAL ALA GLN ALA PRO VAL THR LYS GLY CYS TYR SEQRES 21 A 758 LEU ALA THR GLY SER LYS ASP GLN THR ILE ARG ILE TRP SEQRES 22 A 758 SER CYS SER ARG GLY ARG GLY VAL MET ILE LEU LYS LEU SEQRES 23 A 758 PRO PHE LEU LYS ARG ARG GLY GLY GLY ILE ASP PRO THR SEQRES 24 A 758 VAL LYS GLU ARG LEU TRP LEU THR LEU HIS TRP PRO SER SEQRES 25 A 758 ASN GLN PRO THR GLN LEU VAL SER SER CYS PHE GLY GLY SEQRES 26 A 758 GLU LEU LEU GLN TRP ASP LEU THR GLN SER TRP ARG ARG SEQRES 27 A 758 LYS TYR THR LEU PHE SER ALA SER SER GLU GLY GLN ASN SEQRES 28 A 758 HIS SER ARG ILE VAL PHE ASN LEU CYS PRO LEU GLN THR SEQRES 29 A 758 GLU ASP ASP LYS GLN LEU LEU LEU SER THR SER MET ASP SEQRES 30 A 758 ARG ASP VAL LYS CYS TRP ASP ILE ALA THR LEU GLU CYS SEQRES 31 A 758 SER TRP THR LEU PRO SER LEU GLY GLY PHE ALA TYR SER SEQRES 32 A 758 LEU ALA PHE SER SER VAL ASP ILE GLY SER LEU ALA ILE SEQRES 33 A 758 GLY VAL GLY ASP GLY MET ILE ARG VAL TRP ASN THR LEU SEQRES 34 A 758 SER ILE LYS ASN ASN TYR ASP VAL LYS ASN PHE TRP GLN SEQRES 35 A 758 GLY VAL LYS SER LYS VAL THR ALA LEU CYS TRP HIS PRO SEQRES 36 A 758 THR LYS GLU GLY CYS LEU ALA PHE GLY THR ASP ASP GLY SEQRES 37 A 758 LYS VAL GLY LEU TYR ASP THR TYR SER ASN LYS PRO PRO SEQRES 38 A 758 GLN ILE SER SER THR TYR HIS LYS LYS THR VAL TYR THR SEQRES 39 A 758 LEU ALA TRP GLY PRO PRO VAL PRO PRO MET SER LEU GLY SEQRES 40 A 758 GLY GLU GLY ASP ARG PRO SER LEU ALA LEU TYR SER CYS SEQRES 41 A 758 GLY GLY GLU GLY ILE VAL LEU GLN HIS ASN PRO TRP LYS SEQRES 42 A 758 LEU SER GLY GLU ALA PHE ASP ILE ASN LYS LEU ILE ARG SEQRES 43 A 758 ASP THR ASN SER ILE LYS TYR LYS LEU PRO VAL HIS THR SEQRES 44 A 758 GLU ILE SER TRP LYS ALA ASP GLY LYS ILE MET ALA LEU SEQRES 45 A 758 GLY ASN GLU ASP GLY SER ILE GLU ILE PHE GLN ILE PRO SEQRES 46 A 758 ASN LEU LYS LEU ILE CYS THR ILE GLN GLN HIS HIS LYS SEQRES 47 A 758 LEU VAL ASN THR ILE SER TRP HIS HIS GLU HIS GLY SER SEQRES 48 A 758 GLN PRO GLU LEU SER TYR LEU MET ALA SER GLY SER ASN SEQRES 49 A 758 ASN ALA VAL ILE TYR VAL HIS ASN LEU LYS THR VAL ILE SEQRES 50 A 758 GLU SER SER PRO GLU SER PRO VAL THR ILE THR GLU PRO SEQRES 51 A 758 TYR ARG THR LEU SER GLY HIS THR ALA LYS ILE THR SER SEQRES 52 A 758 VAL ALA TRP SER PRO HIS HIS ASP GLY ARG LEU VAL SER SEQRES 53 A 758 ALA SER TYR ASP GLY THR ALA GLN VAL TRP ASP ALA LEU SEQRES 54 A 758 ARG GLU GLU PRO LEU CYS ASN PHE ARG GLY HIS GLN GLY SEQRES 55 A 758 ARG LEU LEU CYS VAL ALA TRP SER PRO LEU ASP PRO ASP SEQRES 56 A 758 CYS ILE TYR SER GLY ALA ASP ASP PHE CYS VAL HIS LYS SEQRES 57 A 758 TRP LEU THR SER MET GLN ASP HIS SER ARG PRO PRO GLN SEQRES 58 A 758 GLY LYS LYS SER ILE GLU LEU GLU LYS LYS ARG LEU SER SEQRES 59 A 758 GLN PRO LYS ALA HET GOL A 801 6 HET GOL A 802 6 HET GOL A 803 6 HET UNX A 804 1 HET UNX A 805 1 HET UNX A 806 1 HET UNX A 807 1 HET UNX A 808 1 HET UNX A 809 1 HET UNX A 810 1 HET UNX A 811 1 HET UNX A 812 1 HET UNX A 813 1 HET UNX A 814 1 HET UNX A 815 1 HET UNX A 816 1 HET UNX A 817 1 HET UNX A 818 1 HET UNX A 819 1 HET UNX A 820 1 HET UNX A 821 1 HET UNX A 822 1 HET UNX A 823 1 HET UNX A 824 1 HET UNX A 825 1 HET UNX A 826 1 HET UNX A 827 1 HET UNX A 828 1 HET UNX A 829 1 HET UNX A 830 1 HET UNX A 831 1 HET UNX A 832 1 HET UNX A 833 1 HET UNX A 834 1 HET UNX A 835 1 HET UNX A 836 1 HET UNX A 837 1 HET UNX A 838 1 HET NA A 839 1 HET NA A 840 1 HETNAM GOL GLYCEROL HETNAM UNX UNKNOWN ATOM OR ION HETNAM NA SODIUM ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 GOL 3(C3 H8 O3) FORMUL 5 UNX 35(X) FORMUL 40 NA 2(NA 1+) FORMUL 42 HOH *420(H2 O) HELIX 1 AA1 PRO A 43 GLY A 46 5 4 HELIX 2 AA2 ASN A 140 ASN A 142 5 3 HELIX 3 AA3 SER A 182 LYS A 184 5 3 HELIX 4 AA4 PHE A 304 GLY A 306 5 3 HELIX 5 AA5 THR A 314 SER A 316 5 3 HELIX 6 AA6 PRO A 484 GLY A 488 5 5 HELIX 7 AA7 ILE A 522 SER A 531 1 10 HELIX 8 AA8 GLN A 593 SER A 597 5 5 HELIX 9 AA9 LEU A 614 SER A 621 1 8 HELIX 10 AB1 LEU A 670 GLU A 672 5 3 HELIX 11 AB2 SER A 713 GLN A 715 5 3 SHEET 1 AA1 4 ARG A 6 LEU A 8 0 SHEET 2 AA1 4 VAL A 707 LEU A 711 -1 O LYS A 709 N ARG A 6 SHEET 3 AA1 4 CYS A 697 ALA A 702 -1 N ILE A 698 O TRP A 710 SHEET 4 AA1 4 LEU A 685 TRP A 690 -1 N ALA A 689 O TYR A 699 SHEET 1 AA2 4 SER A 20 VAL A 23 0 SHEET 2 AA2 4 LEU A 27 ALA A 32 -1 O GLY A 29 N ASP A 21 SHEET 3 AA2 4 SER A 35 VAL A 41 -1 O VAL A 39 N PHE A 28 SHEET 4 AA2 4 PHE A 54 LEU A 60 -1 O GLY A 58 N LEU A 38 SHEET 1 AA3 4 VAL A 67 PHE A 72 0 SHEET 2 AA3 4 LEU A 81 SER A 86 -1 O ALA A 83 N THR A 71 SHEET 3 AA3 4 VAL A 91 ASP A 95 -1 O TRP A 94 N CYS A 82 SHEET 4 AA3 4 THR A 100 HIS A 105 -1 O VAL A 102 N ILE A 93 SHEET 1 AA4 4 ILE A 112 TRP A 117 0 SHEET 2 AA4 4 LEU A 124 ASP A 129 -1 O GLY A 128 N SER A 113 SHEET 3 AA4 4 VAL A 133 TRP A 138 -1 O TYR A 137 N ILE A 125 SHEET 4 AA4 4 ASP A 143 PHE A 148 -1 O LEU A 147 N VAL A 134 SHEET 1 AA5 4 ILE A 154 CYS A 159 0 SHEET 2 AA5 4 LEU A 166 TYR A 171 -1 O GLY A 170 N PHE A 155 SHEET 3 AA5 4 VAL A 176 ASP A 180 -1 O ILE A 179 N VAL A 167 SHEET 4 AA5 4 VAL A 187 LEU A 191 -1 O LEU A 191 N VAL A 176 SHEET 1 AA6 4 ILE A 198 TRP A 203 0 SHEET 2 AA6 4 TYR A 241 SER A 246 -1 O ALA A 243 N ALA A 202 SHEET 3 AA6 4 THR A 250 SER A 255 -1 O TRP A 254 N LEU A 242 SHEET 4 AA6 4 ARG A 260 LYS A 266 -1 O LEU A 265 N ILE A 251 SHEET 1 AA7 4 LEU A 289 HIS A 290 0 SHEET 2 AA7 4 GLN A 298 SER A 302 -1 O VAL A 300 N HIS A 290 SHEET 3 AA7 4 LEU A 308 ASP A 312 -1 O TRP A 311 N LEU A 299 SHEET 4 AA7 4 LYS A 320 LEU A 323 -1 O THR A 322 N GLN A 310 SHEET 1 AA8 4 VAL A 337 GLN A 344 0 SHEET 2 AA8 4 GLN A 350 SER A 356 -1 O LEU A 353 N CYS A 341 SHEET 3 AA8 4 ASP A 360 ASP A 365 -1 O TRP A 364 N LEU A 352 SHEET 4 AA8 4 CYS A 371 PRO A 376 -1 O LEU A 375 N VAL A 361 SHEET 1 AA9 4 ALA A 382 PHE A 387 0 SHEET 2 AA9 4 SER A 394 VAL A 399 -1 O ALA A 396 N ALA A 386 SHEET 3 AA9 4 ILE A 404 ASN A 408 -1 O TRP A 407 N LEU A 395 SHEET 4 AA9 4 VAL A 418 PHE A 421 -1 O PHE A 421 N ILE A 404 SHEET 1 AB1 4 VAL A 429 TRP A 434 0 SHEET 2 AB1 4 CYS A 441 THR A 446 -1 O ALA A 443 N CYS A 433 SHEET 3 AB1 4 VAL A 451 ASP A 455 -1 O TYR A 454 N LEU A 442 SHEET 4 AB1 4 GLN A 463 ILE A 464 -1 O GLN A 463 N LEU A 453 SHEET 1 AB2 4 VAL A 473 GLY A 479 0 SHEET 2 AB2 4 ALA A 497 GLY A 502 -1 O TYR A 499 N ALA A 477 SHEET 3 AB2 4 VAL A 507 HIS A 510 -1 O HIS A 510 N LEU A 498 SHEET 4 AB2 4 PHE A 520 ASP A 521 -1 O PHE A 520 N GLN A 509 SHEET 1 AB3 5 HIS A 539 TRP A 544 0 SHEET 2 AB3 5 ILE A 550 ASN A 555 -1 O GLY A 554 N THR A 540 SHEET 3 AB3 5 ILE A 560 GLN A 564 -1 O GLU A 561 N LEU A 553 SHEET 4 AB3 5 LYS A 569 ILE A 574 -1 O ILE A 574 N ILE A 560 SHEET 5 AB3 5 VAL A 626 ILE A 628 1 O ILE A 628 N THR A 573 SHEET 1 AB4 4 VAL A 581 TRP A 586 0 SHEET 2 AB4 4 LEU A 599 SER A 604 -1 O ALA A 601 N SER A 585 SHEET 3 AB4 4 ILE A 609 ASN A 613 -1 O HIS A 612 N MET A 600 SHEET 4 AB4 4 ARG A 633 LEU A 635 -1 O LEU A 635 N ILE A 609 SHEET 1 AB5 4 ILE A 642 TRP A 647 0 SHEET 2 AB5 4 ARG A 654 SER A 659 -1 O VAL A 656 N ALA A 646 SHEET 3 AB5 4 ALA A 664 ASP A 668 -1 O TRP A 667 N LEU A 655 SHEET 4 AB5 4 GLU A 673 PHE A 678 -1 O LEU A 675 N VAL A 666 SSBOND 1 CYS A 240 CYS A 256 1555 1555 2.02 LINK O ALA A 106 NA NA A 839 1555 1555 2.37 LINK O HIS A 108 NA NA A 839 1555 1555 2.53 LINK O ARG A 679 NA NA A 840 1555 1555 2.43 LINK O HIS A 681 NA NA A 840 1555 1555 2.52 LINK NA NA A 839 O HOH A1265 1555 1555 2.15 LINK NA NA A 839 O HOH A1031 1555 1555 2.46 LINK NA NA A 839 O HOH A1290 1555 1555 2.42 LINK NA NA A 839 O HOH A1284 1555 1555 2.27 LINK NA NA A 840 O HOH A1066 1555 1555 2.25 CISPEP 1 GLY A 25 GLY A 26 0 -4.61 CISPEP 2 PRO A 483 PRO A 484 0 6.70 CISPEP 3 ILE A 565 PRO A 566 0 0.69 SITE 1 AC1 6 PRO A 12 ASN A 13 TRP A 14 ARG A 359 SITE 2 AC1 6 HOH A 951 HOH A1023 SITE 1 AC2 9 TYR A 15 SER A 113 PHE A 155 TRP A 286 SITE 2 AC2 9 HOH A 907 HOH A 956 HOH A1039 HOH A1187 SITE 3 AC2 9 HOH A1229 SITE 1 AC3 6 PHE A 269 LEU A 270 ARG A 272 PHE A 304 SITE 2 AC3 6 ASP A 668 HOH A1058 SITE 1 AC4 6 ALA A 106 HIS A 108 HOH A1031 HOH A1265 SITE 2 AC4 6 HOH A1284 HOH A1290 SITE 1 AC5 3 ARG A 679 HIS A 681 HOH A1066 CRYST1 60.811 124.407 61.034 90.00 119.49 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016444 0.000000 0.009299 0.00000 SCALE2 0.000000 0.008038 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018822 0.00000 MASTER 447 0 40 11 57 0 10 6 0 0 0 59 END