HEADER HYDROLASE/DNA 07-SEP-16 5T8D TITLE ENGINEERED VARIANT OF I-ONUI MEGANUCLEASE TARGETING THE HIV INTEGRASE TITLE 2 GENE; HARBORS 47 POINT MUTATIONS RELATIVE TO WILD-TYPE I-ONUI COMPND MOL_ID: 1; COMPND 2 MOLECULE: I-ONUI_E-VHIVINT_V2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: DNA (26-MER); COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: DNA (26-MER); COMPND 11 CHAIN: C; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 3 ORGANISM_TAXID: 32630; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)RIL; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 10 ORGANISM_TAXID: 32630; SOURCE 11 MOL_ID: 3; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630 KEYWDS MEGANUCLEASE, ENGINEERED PROTEIN, DNA COMPLEX, HOMING ENDONUCLEASE, KEYWDS 2 HYDROLASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR B.L.STODDARD,R.WERTHER,A.R.LAMBERT REVDAT 4 18-MAR-20 5T8D 1 JRNL REVDAT 3 25-DEC-19 5T8D 1 REMARK REVDAT 2 27-SEP-17 5T8D 1 REMARK REVDAT 1 03-MAY-17 5T8D 0 JRNL AUTH N.NIYONZIMA,A.R.LAMBERT,R.WERTHER,H.DE SILVA FEELIXGE, JRNL AUTH 2 P.ROYCHOUDHURY,A.L.GRENINGER,D.STONE,B.L.STODDARD,K.R.JEROME JRNL TITL TUNING DNA BINDING AFFINITY AND CLEAVAGE SPECIFICITY OF AN JRNL TITL 2 ENGINEERED GENE-TARGETING NUCLEASE VIA SURFACE DISPLAY, FLOW JRNL TITL 3 CYTOMETRY AND CELLULAR ANALYSES. JRNL REF PROTEIN ENG.DES.SEL. V. 30 503 2017 JRNL REFN ESSN 1741-0134 JRNL PMID 28873986 JRNL DOI 10.1093/PROTEIN/GZX037 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10.1_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 27694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.182 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.3908 - 4.6298 1.00 2832 149 0.1523 0.1745 REMARK 3 2 4.6298 - 3.6754 1.00 2674 140 0.1405 0.1649 REMARK 3 3 3.6754 - 3.2109 0.99 2631 139 0.1742 0.2280 REMARK 3 4 3.2109 - 2.9174 1.00 2631 139 0.2170 0.2988 REMARK 3 5 2.9174 - 2.7083 1.00 2602 136 0.2203 0.3054 REMARK 3 6 2.7083 - 2.5487 1.00 2609 137 0.2234 0.3044 REMARK 3 7 2.5487 - 2.4210 1.00 2593 137 0.2194 0.2479 REMARK 3 8 2.4210 - 2.3157 1.00 2591 136 0.2236 0.2786 REMARK 3 9 2.3157 - 2.2265 1.00 2575 135 0.2190 0.2802 REMARK 3 10 2.2265 - 2.1497 0.99 2572 136 0.2364 0.3102 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 34.29 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3576 REMARK 3 ANGLE : 0.996 5051 REMARK 3 CHIRALITY : 0.058 565 REMARK 3 PLANARITY : 0.006 459 REMARK 3 DIHEDRAL : 21.249 1935 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5T8D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-SEP-16. REMARK 100 THE DEPOSITION ID IS D_1000223868. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 108 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27792 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.60 REMARK 200 R MERGE (I) : 0.09300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.15 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.23 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.6.0 REMARK 200 STARTING MODEL: 3QQY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M AMMONIUM SULFATE, 0.1 M HEPES PH REMARK 280 7.0, 22.5% W/V POLYETHYLENE GLYCOL 3,350, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.85050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.57900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.50350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 82.57900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.85050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.50350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -95.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 6 REMARK 465 ARG A 34 REMARK 465 GLY A 35 REMARK 465 ARG A 36 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 32 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 33 CG OD1 ND2 REMARK 470 ILE A 37 CG1 CG2 CD1 REMARK 470 LYS A 65 CG CD CE NZ REMARK 470 LYS A 96 CG CD CE NZ REMARK 470 LYS A 120 CG CD CE NZ REMARK 470 LYS A 124 CG CD CE NZ REMARK 470 GLU A 125 CG CD OE1 OE2 REMARK 470 ASN A 126 CG OD1 ND2 REMARK 470 LYS A 129 CG CD CE NZ REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 SER A 189 OG REMARK 470 SER A 192 OG REMARK 470 SER A 230 OG REMARK 470 GLU A 255 CG CD OE1 OE2 REMARK 470 LYS A 280 CG CD CE NZ REMARK 470 GLU A 284 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 626 O HOH A 637 2.01 REMARK 500 NH1 ARG A 156 O HOH A 501 2.08 REMARK 500 O HOH A 548 O HOH A 633 2.10 REMARK 500 O HOH C 128 O HOH C 147 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 2 O4' - C1' - N9 ANGL. DEV. = 1.8 DEGREES REMARK 500 DG B 3 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DG B 3 O4' - C1' - N9 ANGL. DEV. = 4.3 DEGREES REMARK 500 DC B 22 C3' - C2' - C1' ANGL. DEV. = -5.6 DEGREES REMARK 500 DC B 22 O4' - C1' - N1 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 119 23.15 -78.41 REMARK 500 LYS A 120 17.88 51.57 REMARK 500 ASN A 139 -120.04 42.43 REMARK 500 ASP A 208 42.62 -109.32 REMARK 500 LYS A 279 11.29 57.85 REMARK 500 ASN A 298 -122.35 51.30 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 21 O REMARK 620 2 GLU A 178 OE2 95.0 REMARK 620 3 DC B 16 OP1 173.7 78.7 REMARK 620 4 DA C 16 OP2 85.7 108.1 96.0 REMARK 620 5 HOH A 540 O 88.4 82.0 90.9 168.7 REMARK 620 6 HOH B 145 O 107.4 156.9 78.9 79.9 92.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 403 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE1 REMARK 620 2 GLU A 178 OE1 112.4 REMARK 620 3 DC B 16 O3' 160.2 85.8 REMARK 620 4 DA B 17 OP2 110.8 100.8 55.9 REMARK 620 5 DT C 15 O3' 77.9 152.3 89.2 98.8 REMARK 620 6 DA C 16 OP2 86.2 101.3 97.9 144.0 52.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 22 OE2 REMARK 620 2 GLY A 177 O 85.1 REMARK 620 3 DA B 17 OP2 100.6 74.9 REMARK 620 4 DT C 15 OP1 92.6 177.6 105.5 REMARK 620 5 HOH A 566 O 84.9 90.9 164.1 89.0 REMARK 620 6 HOH A 619 O 160.3 88.7 95.8 93.6 76.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue CA A 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5V0Q RELATED DB: PDB DBREF 5T8D A 6 301 PDB 5T8D 5T8D 6 301 DBREF 5T8D B 1 26 PDB 5T8D 5T8D 1 26 DBREF 5T8D C 1 26 PDB 5T8D 5T8D 1 26 SEQRES 1 A 296 MET ALA SER SER ILE ASN PRO TRP ILE LEU THR GLY PHE SEQRES 2 A 296 ALA ASP ALA GLU GLY SER PHE GLY LEU TYR ILE ILE ASN SEQRES 3 A 296 ARG ASN ARG GLY ARG ILE ARG TYR THR THR ARG LEU LYS SEQRES 4 A 296 PHE THR ILE THR LEU HIS ASN LYS ASP LYS SER ILE LEU SEQRES 5 A 296 GLU ASN ILE GLN SER THR TRP LYS VAL GLY ILE ILE ALA SEQRES 6 A 296 ASN ASN GLY ASP ASN ALA VAL SER LEU ILE VAL THR ARG SEQRES 7 A 296 PHE GLU ASP LEU LYS VAL ILE ILE ASP HIS PHE GLU LYS SEQRES 8 A 296 TYR PRO LEU ILE THR GLN LYS LEU GLY ASP TYR LYS LEU SEQRES 9 A 296 PHE LYS GLN ALA PHE SER VAL MET GLU ASN LYS GLU HIS SEQRES 10 A 296 LEU LYS GLU ASN GLY ILE LYS GLU LEU VAL ARG ILE LYS SEQRES 11 A 296 ALA LYS MET ASN TRP GLY LEU THR ASP GLU LEU LYS LYS SEQRES 12 A 296 ALA PHE PRO GLY ASN ILE SER ARG GLU ARG PRO LEU ILE SEQRES 13 A 296 ASN LYS ASN ILE PRO ASN PHE LYS TRP LEU ALA GLY PHE SEQRES 14 A 296 THR SER GLY GLU GLY HIS PHE GLY VAL GLU LEU ILE LYS SEQRES 15 A 296 ASN SER ARG ASN SER ARG VAL HIS VAL ARG LEU ARG PHE SEQRES 16 A 296 GLU ILE ALA GLN HIS VAL ARG ASP LYS ASN LEU MET ASN SEQRES 17 A 296 SER LEU ILE THR TYR LEU GLY CYS GLY TYR ILE TYR GLU SEQRES 18 A 296 GLN ASN TYR SER GLU ARG SER TRP LEU ARG PHE SER VAL SEQRES 19 A 296 SER LYS PHE SER ASP ILE ASN ASP LYS ILE ILE PRO VAL SEQRES 20 A 296 PHE GLN GLU ASN THR LEU ILE GLY VAL LYS LEU GLU ASP SEQRES 21 A 296 PHE GLU ASP TRP CYS LYS VAL ALA LYS LEU ILE GLU GLU SEQRES 22 A 296 LYS LYS HIS LEU THR GLU SER GLY LEU ASP GLU ILE LYS SEQRES 23 A 296 LYS ILE LYS LEU ASN MET ASN LYS GLY ARG SEQRES 1 B 26 DG DG DG DA DA DT DG DG DC DA DG DT DA SEQRES 2 B 26 DT DT DC DA DT DC DC DA DC DA DA DT DG SEQRES 1 C 26 DC DC DA DT DT DG DT DG DG DA DT DG DA SEQRES 2 C 26 DA DT DA DC DT DG DC DC DA DT DT DC DC HET CA A 401 1 HET CA A 402 1 HET CA A 403 1 HETNAM CA CALCIUM ION FORMUL 4 CA 3(CA 2+) FORMUL 7 HOH *259(H2 O) HELIX 1 AA1 ASN A 11 GLU A 22 1 12 HELIX 2 AA2 ASP A 53 LYS A 65 1 13 HELIX 3 AA3 ARG A 83 TYR A 97 1 15 HELIX 4 AA4 GLN A 102 ASN A 119 1 18 HELIX 5 AA5 LYS A 120 LEU A 123 5 4 HELIX 6 AA6 LYS A 124 MET A 138 1 15 HELIX 7 AA7 THR A 143 PHE A 150 1 8 HELIX 8 AA8 ASN A 167 GLU A 178 1 12 HELIX 9 AA9 ASP A 208 GLY A 220 1 13 HELIX 10 AB1 LYS A 241 ASN A 256 1 16 HELIX 11 AB2 VAL A 261 GLU A 278 1 18 HELIX 12 AB3 LYS A 279 LEU A 282 5 4 HELIX 13 AB4 THR A 283 ASN A 296 1 14 HELIX 14 AB5 MET A 297 ARG A 301 5 5 SHEET 1 AA1 4 GLY A 23 ASN A 31 0 SHEET 2 AA1 4 TYR A 39 HIS A 50 -1 O LYS A 44 N GLY A 26 SHEET 3 AA1 4 ALA A 76 VAL A 81 -1 O VAL A 77 N LEU A 49 SHEET 4 AA1 4 ILE A 68 ASN A 72 -1 N ILE A 68 O ILE A 80 SHEET 1 AA2 4 GLY A 179 ILE A 186 0 SHEET 2 AA2 4 HIS A 195 HIS A 205 -1 O HIS A 195 N ILE A 186 SHEET 3 AA2 4 TRP A 234 VAL A 239 -1 O LEU A 235 N GLN A 204 SHEET 4 AA2 4 TYR A 223 GLN A 227 -1 N TYR A 223 O SER A 238 LINK O ALA A 21 CA CA A 402 1555 1555 2.34 LINK OE1 GLU A 22 CA CA A 403 1555 1555 2.33 LINK OE2 GLU A 22 CA CA A 401 1555 1555 2.35 LINK O GLY A 177 CA CA A 401 1555 1555 2.42 LINK OE1 GLU A 178 CA CA A 403 1555 1555 2.33 LINK OE2 GLU A 178 CA CA A 402 1555 1555 2.34 LINK OP1 DC B 16 CA CA A 402 1555 1555 2.27 LINK O3' DC B 16 CA CA A 403 1555 1555 2.75 LINK OP2 DA B 17 CA CA A 401 1555 1555 2.27 LINK OP2 DA B 17 CA CA A 403 1555 1555 2.53 LINK OP1 DT C 15 CA CA A 401 1555 1555 2.26 LINK O3' DT C 15 CA CA A 403 1555 1555 2.94 LINK OP2 DA C 16 CA CA A 402 1555 1555 2.28 LINK OP2 DA C 16 CA CA A 403 1555 1555 2.43 LINK CA CA A 401 O HOH A 566 1555 1555 2.32 LINK CA CA A 401 O HOH A 619 1555 1555 2.54 LINK CA CA A 402 O HOH A 540 1555 1555 2.54 LINK CA CA A 402 O HOH B 145 1555 1555 2.51 CISPEP 1 TYR A 229 SER A 230 0 -12.49 SITE 1 AC1 6 GLU A 22 GLY A 177 HOH A 566 HOH A 619 SITE 2 AC1 6 DA B 17 DT C 15 SITE 1 AC2 6 ALA A 21 GLU A 178 HOH A 540 DC B 16 SITE 2 AC2 6 HOH B 145 DA C 16 SITE 1 AC3 7 GLU A 22 GLY A 177 GLU A 178 DC B 16 SITE 2 AC3 7 DA B 17 DT C 15 DA C 16 CRYST1 39.701 75.007 165.158 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025188 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013332 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006055 0.00000 MASTER 349 0 3 14 8 0 6 6 0 0 0 27 END