HEADER TRANSPORT PROTEIN 26-AUG-16 5T3U TITLE CRYSTAL STRUCTURE OF THE PTS IIA PROTEIN ASSOCIATED WITH THE FUCOSE TITLE 2 UTILIZATION OPERON FROM STREPTOCOCCUS PNEUMONIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PTS SYSTEM, IIA COMPONENT; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE SEROTYPE 4 (STRAIN SOURCE 3 ATCC BAA-334 / TIGR4); SOURCE 4 ORGANISM_TAXID: 170187; SOURCE 5 STRAIN: ATCC BAA-334 / TIGR4; SOURCE 6 GENE: SP_2164; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PTS, TRANSPORT, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.A.HIGGINS,A.B.BORASTON REVDAT 3 26-APR-17 5T3U 1 JRNL REVDAT 2 22-FEB-17 5T3U 1 JRNL REVDAT 1 26-OCT-16 5T3U 0 JRNL AUTH M.A.HIGGINS,A.M.HAMILTON,A.B.BORASTON JRNL TITL STRUCTURAL CHARACTERIZATION OF THE PTS IIA AND IIB PROTEINS JRNL TITL 2 ASSOCIATED WITH PNEUMOCOCCAL FUCOSE UTILIZATION. JRNL REF PROTEINS V. 85 963 2017 JRNL REFN ESSN 1097-0134 JRNL PMID 28168775 JRNL DOI 10.1002/PROT.25264 REMARK 2 REMARK 2 RESOLUTION. 2.15 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.15 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 24508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.206 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.253 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1286 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.15 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.21 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1788 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 96.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3120 REMARK 3 BIN FREE R VALUE SET COUNT : 79 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2079 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 285 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.181 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.117 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.450 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.925 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2135 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2885 ; 1.391 ; 1.962 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 267 ; 6.107 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;39.162 ;26.132 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 358 ;13.200 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;13.824 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 341 ; 0.102 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1596 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1331 ; 0.778 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2151 ; 1.476 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 804 ; 2.154 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 734 ; 3.708 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5T3U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000223649. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-JAN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 197784 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.150 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.2 REMARK 200 DATA REDUNDANCY : 7.670 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG3350, 0.2M AMMONIUM SULFATE, REMARK 280 0.1M CITRATE PH 5.8, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 50.10100 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 96.49300 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 48.24650 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 50.10100 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 144.73950 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 144.73950 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.10100 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 48.24650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 50.10100 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 96.49300 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 50.10100 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 96.49300 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 50.10100 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 144.73950 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 48.24650 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 50.10100 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 48.24650 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 144.73950 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 50.10100 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 50.10100 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 96.49300 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3880 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12320 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 100.20200 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 100.20200 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 200.40400 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 100.20200 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 445 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 378 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 HIS A 1 REMARK 465 VAL A 138 REMARK 465 GLU A 139 REMARK 465 GLU A 140 REMARK 465 GLU A 141 REMARK 465 GLU A 142 REMARK 465 ASP A 143 REMARK 465 LEU A 144 REMARK 465 CYS A 145 REMARK 465 LEU A 146 REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 ASN B 137 REMARK 465 VAL B 138 REMARK 465 GLU B 139 REMARK 465 GLU B 140 REMARK 465 GLU B 141 REMARK 465 GLU B 142 REMARK 465 ASP B 143 REMARK 465 LEU B 144 REMARK 465 CYS B 145 REMARK 465 LEU B 146 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 MET A 2 CG SD CE REMARK 470 TYR B 54 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 374 O HOH B 385 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 4 CB SER A 4 OG 0.100 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 484 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH A 485 DISTANCE = 6.19 ANGSTROMS REMARK 525 HOH A 486 DISTANCE = 6.37 ANGSTROMS REMARK 525 HOH A 487 DISTANCE = 6.82 ANGSTROMS REMARK 525 HOH B 398 DISTANCE = 6.01 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 15P A 201 REMARK 610 15P B 201 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AD2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residues 15P A 201 and 15P B REMARK 800 201 DBREF1 5T3U A 5 146 UNP A0A0H2US38_STRPN DBREF2 5T3U A A0A0H2US38 2 143 DBREF1 5T3U B 5 146 UNP A0A0H2US38_STRPN DBREF2 5T3U B A0A0H2US38 2 143 SEQADV 5T3U GLY A -1 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U SER A 0 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U HIS A 1 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U MET A 2 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U ALA A 3 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U SER A 4 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U GLY B -1 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U SER B 0 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U HIS B 1 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U MET B 2 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U ALA B 3 UNP A0A0H2US3 EXPRESSION TAG SEQADV 5T3U SER B 4 UNP A0A0H2US3 EXPRESSION TAG SEQRES 1 A 148 GLY SER HIS MET ALA SER PHE ASN ARG GLY ILE LEU VAL SEQRES 2 A 148 ALA SER HIS GLY ASN PHE ALA SER GLY ALA LEU MET THR SEQRES 3 A 148 ALA GLU MET PHE VAL GLY GLU THR THR ASN ASP ARG VAL SEQRES 4 A 148 ARG THR LEU GLY LEU MET PRO GLY GLU ASN ILE VAL GLU SEQRES 5 A 148 PHE GLU HIS TYR PHE LYS ASN GLN VAL ASP GLU LEU LEU SEQRES 6 A 148 ASP SER ASN GLN GLU VAL ILE VAL LEU THR ASP LEU ILE SEQRES 7 A 148 GLY GLY SER PRO ASN ASN VAL ALA LEU SER ARG PHE LEU SEQRES 8 A 148 ASN LEU ASP SER VAL ASP ILE VAL THR GLY PHE ASN ILE SEQRES 9 A 148 PRO LEU LEU VAL GLU LEU ILE SER SER TYR ASP SER LYS SEQRES 10 A 148 ILE ASN LEU GLU GLU ILE VAL HIS ASN ALA GLN ASN SER SEQRES 11 A 148 LEU PHE ASN VAL LYS GLN GLN LEU ASN VAL GLU GLU GLU SEQRES 12 A 148 GLU ASP LEU CYS LEU SEQRES 1 B 148 GLY SER HIS MET ALA SER PHE ASN ARG GLY ILE LEU VAL SEQRES 2 B 148 ALA SER HIS GLY ASN PHE ALA SER GLY ALA LEU MET THR SEQRES 3 B 148 ALA GLU MET PHE VAL GLY GLU THR THR ASN ASP ARG VAL SEQRES 4 B 148 ARG THR LEU GLY LEU MET PRO GLY GLU ASN ILE VAL GLU SEQRES 5 B 148 PHE GLU HIS TYR PHE LYS ASN GLN VAL ASP GLU LEU LEU SEQRES 6 B 148 ASP SER ASN GLN GLU VAL ILE VAL LEU THR ASP LEU ILE SEQRES 7 B 148 GLY GLY SER PRO ASN ASN VAL ALA LEU SER ARG PHE LEU SEQRES 8 B 148 ASN LEU ASP SER VAL ASP ILE VAL THR GLY PHE ASN ILE SEQRES 9 B 148 PRO LEU LEU VAL GLU LEU ILE SER SER TYR ASP SER LYS SEQRES 10 B 148 ILE ASN LEU GLU GLU ILE VAL HIS ASN ALA GLN ASN SER SEQRES 11 B 148 LEU PHE ASN VAL LYS GLN GLN LEU ASN VAL GLU GLU GLU SEQRES 12 B 148 GLU ASP LEU CYS LEU HET 15P A 201 16 HET 15P B 201 13 HETNAM 15P POLYETHYLENE GLYCOL (N=34) HETSYN 15P PEG 1500 FORMUL 3 15P 2(C69 H140 O35) FORMUL 5 HOH *285(H2 O) HELIX 1 AA1 ASN A 16 GLY A 30 1 15 HELIX 2 AA2 ASN A 47 ASP A 64 1 18 HELIX 3 AA3 GLY A 78 LEU A 89 1 12 HELIX 4 AA4 ASN A 101 SER A 111 1 11 HELIX 5 AA5 ASN A 117 SER A 128 1 12 HELIX 6 AA6 ASN A 131 ASN A 137 1 7 HELIX 7 AA7 ASN B 16 GLY B 30 1 15 HELIX 8 AA8 ASN B 47 ASN B 66 1 20 HELIX 9 AA9 GLY B 78 LEU B 89 1 12 HELIX 10 AB1 ASN B 101 SER B 111 1 11 HELIX 11 AB2 ASN B 117 SER B 128 1 12 SHEET 1 AA1 4 VAL A 37 LEU A 42 0 SHEET 2 AA1 4 PHE A 5 HIS A 14 1 N VAL A 11 O ARG A 38 SHEET 3 AA1 4 ASN A 66 THR A 73 1 O LEU A 72 N ALA A 12 SHEET 4 AA1 4 VAL A 94 THR A 98 1 O ASP A 95 N VAL A 71 SHEET 1 AA2 4 VAL B 37 LEU B 42 0 SHEET 2 AA2 4 GLY B 8 HIS B 14 1 N VAL B 11 O ARG B 38 SHEET 3 AA2 4 VAL B 69 THR B 73 1 O LEU B 72 N LEU B 10 SHEET 4 AA2 4 VAL B 94 THR B 98 1 O ASP B 95 N VAL B 71 LINK C4 15P A 201 C10 15P B 201 1555 10765 1.51 LINK C4 15P A 201 O5 15P B 201 1555 10765 1.28 LINK C5 15P A 201 C9 15P B 201 1555 10765 1.22 LINK C5 15P A 201 C8 15P B 201 1555 10765 1.64 LINK C6 15P A 201 O3 15P B 201 1555 10765 1.39 LINK C6 15P A 201 C7 15P B 201 1555 10765 1.18 LINK C6 15P A 201 C8 15P B 201 1555 10765 1.23 LINK C7 15P A 201 C6 15P B 201 1555 10765 1.36 LINK C7 15P A 201 O3 15P B 201 1555 10765 1.38 LINK C8 15P A 201 O2 15P B 201 1555 10765 1.16 LINK C10 15P A 201 C3 15P B 201 1555 10765 1.56 SITE 1 AC1 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC1 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC1 9 SER B 79 SITE 1 AC2 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC2 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC2 9 SER B 79 SITE 1 AC3 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC3 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC3 9 SER B 79 SITE 1 AC4 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC4 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC4 9 SER B 79 SITE 1 AC5 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC5 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC5 9 SER B 79 SITE 1 AC6 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC6 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC6 9 SER B 79 SITE 1 AC7 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC7 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC7 9 SER B 79 SITE 1 AC8 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC8 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC8 9 SER B 79 SITE 1 AC9 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AC9 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AC9 9 SER B 79 SITE 1 AD1 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AD1 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AD1 9 SER B 79 SITE 1 AD2 9 HIS A 14 PHE A 28 SER A 79 HOH A 356 SITE 2 AD2 9 HIS B 14 MET B 27 PHE B 28 GLY B 77 SITE 3 AD2 9 SER B 79 CRYST1 100.202 100.202 192.986 90.00 90.00 90.00 I 41 2 2 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009980 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009980 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005182 0.00000 MASTER 466 0 2 11 8 0 33 6 0 0 0 24 END