HEADER HYDROLASE 08-DEC-16 5MM9 TITLE VIM-2_2B. METALLO-BETA-LACTAMASE INHIBITORS BY BIOISOSTERIC TITLE 2 REPLACEMENT: PREPARATION, ACTIVITY AND BINDING COMPND MOL_ID: 1; COMPND 2 MOLECULE: METALLO-BETA-LACTAMASE VIM-17; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: VERONA INTEGRON-ENCODED METALLO-BETA-LACTAMASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: BLAVIM-17; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: STAR PLYSS KEYWDS INHIBITION PROPERTIES, BIOISOSTERS, THIOLS, METALLO-BETA-LACTAMASE KEYWDS 2 INHIBITOR, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.SKAGSETH,S.AKHTER,M.H.PAULSEN,O.SAMUELSEN,Z.MUHAMMAD,H.-K.S.LEIROS, AUTHOR 2 A.BAYER REVDAT 2 10-MAY-17 5MM9 1 JRNL REVDAT 1 29-MAR-17 5MM9 0 JRNL AUTH S.SKAGSETH,S.AKHTER,M.H.PAULSEN,Z.MUHAMMAD,S.LAUKSUND, JRNL AUTH 2 H.S.LEIROS,A.BAYER JRNL TITL METALLO-BETA-LACTAMASE INHIBITORS BY BIOISOSTERIC JRNL TITL 2 REPLACEMENT: PREPARATION, ACTIVITY AND BINDING. JRNL REF EUR J MED CHEM V. 135 159 2017 JRNL REFN ISSN 1768-3254 JRNL PMID 28445786 JRNL DOI 10.1016/J.EJMECH.2017.04.035 REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.4_1496 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 3 NUMBER OF REFLECTIONS : 54923 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.157 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.610 REMARK 3 FREE R VALUE TEST SET COUNT : 1982 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 24.9449 - 3.7319 0.92 3794 146 0.1453 0.1907 REMARK 3 2 3.7319 - 2.9636 0.93 3776 144 0.1367 0.1669 REMARK 3 3 2.9636 - 2.5895 0.96 3880 142 0.1486 0.2052 REMARK 3 4 2.5895 - 2.3529 0.93 3777 146 0.1464 0.2042 REMARK 3 5 2.3529 - 2.1844 0.95 3860 143 0.1483 0.1991 REMARK 3 6 2.1844 - 2.0556 0.96 3859 144 0.1496 0.1768 REMARK 3 7 2.0556 - 1.9527 0.93 3749 138 0.1514 0.1936 REMARK 3 8 1.9527 - 1.8678 0.93 3741 136 0.1693 0.2255 REMARK 3 9 1.8678 - 1.7959 0.95 3816 141 0.1677 0.2046 REMARK 3 10 1.7959 - 1.7339 0.95 3790 148 0.1791 0.2519 REMARK 3 11 1.7339 - 1.6797 0.94 3760 148 0.1893 0.2283 REMARK 3 12 1.6797 - 1.6317 0.90 3650 129 0.2197 0.2586 REMARK 3 13 1.6317 - 1.5888 0.93 3758 145 0.2272 0.2667 REMARK 3 14 1.5888 - 1.5500 0.93 3731 132 0.2512 0.2815 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.640 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 3705 REMARK 3 ANGLE : 1.276 5078 REMARK 3 CHIRALITY : 0.052 575 REMARK 3 PLANARITY : 0.008 670 REMARK 3 DIHEDRAL : 15.363 1319 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5MM9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-DEC-16. REMARK 100 THE DEPOSITION ID IS D_1200002665. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-MAY-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97625 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 S 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54949 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.61 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.5 REMARK 200 DATA REDUNDANCY IN SHELL : 1.90 REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.910 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5LSC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.01 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22-27 PERCENT POLYETHYLENE GLYCOL PEG REMARK 280 3350 0.2 M MAGNESIUM FORMATE, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 50.55450 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 50.55450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.53500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 529 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 761 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 24 REMARK 465 VAL A 25 REMARK 465 ASP A 26 REMARK 465 SER A 27 REMARK 465 SER A 28 REMARK 465 GLY A 29 REMARK 465 VAL A 298 REMARK 465 VAL A 299 REMARK 465 GLU A 300 REMARK 465 GLY B 24 REMARK 465 VAL B 25 REMARK 465 ASP B 26 REMARK 465 SER B 27 REMARK 465 SER B 28 REMARK 465 GLY B 29 REMARK 465 SER B 297 REMARK 465 VAL B 298 REMARK 465 VAL B 299 REMARK 465 GLU B 300 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 78 CG REMARK 470 SER A 297 CB OG REMARK 470 ASP B 78 CG REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 100 CD REMARK 480 GLN A 251 CG REMARK 480 VAL B 34 CG2 REMARK 480 ASP B 50 CG REMARK 480 PHE B 61 CE2 REMARK 480 TYR B 67 CE2 REMARK 480 GLU B 173 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ASP A 281 N LEU A 283 1.36 REMARK 500 HE22 GLN B 103 O HOH B 514 1.55 REMARK 500 O HOH B 554 O HOH B 729 1.93 REMARK 500 OD1 ASN A 165 O HOH A 501 1.95 REMARK 500 O HOH B 523 O HOH B 729 1.96 REMARK 500 O HOH B 638 O HOH B 648 2.01 REMARK 500 O HOH B 671 O HOH B 724 2.01 REMARK 500 O HOH A 638 O HOH A 733 2.05 REMARK 500 O HOH A 501 O HOH A 586 2.06 REMARK 500 OG SER B 35 O HOH B 501 2.08 REMARK 500 O HOH B 513 O HOH B 677 2.09 REMARK 500 O HOH A 608 O HOH A 717 2.11 REMARK 500 O HOH A 641 O HOH A 718 2.11 REMARK 500 O LEU A 283 N HIS A 285 2.12 REMARK 500 O HOH B 645 O HOH B 726 2.12 REMARK 500 O HOH A 501 O HOH A 614 2.12 REMARK 500 O HOH B 505 O HOH B 696 2.14 REMARK 500 O HOH A 501 O HOH A 641 2.16 REMARK 500 OD1 ASP A 119 O HOH A 501 2.16 REMARK 500 O HOH B 675 O HOH B 702 2.16 REMARK 500 O HOH A 646 O HOH A 709 2.16 REMARK 500 ND2 ASN A 288 O HOH A 502 2.17 REMARK 500 O HOH B 531 O HOH B 724 2.17 REMARK 500 O HOH B 513 O HOH B 590 2.17 REMARK 500 OD2 ASP B 281 O HOH B 502 2.17 REMARK 500 OE2 GLU B 36 O HOH B 503 2.18 REMARK 500 O HOH B 752 O HOH B 779 2.18 REMARK 500 OE2 GLU B 30 O HOH B 504 2.19 REMARK 500 O HOH B 516 O HOH B 578 2.19 REMARK 500 O HOH B 767 O HOH B 773 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 736 O HOH B 582 2554 2.10 REMARK 500 NH2 ARG A 183 OD1 ASN B 165 4545 2.15 REMARK 500 O HOH A 669 O HOH B 772 3546 2.16 REMARK 500 O HOH A 669 O HOH B 696 3546 2.17 REMARK 500 O HOH A 522 O HOH B 505 3546 2.17 REMARK 500 O HOH A 755 O HOH A 759 4545 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 129 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG B 129 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 84 150.09 73.12 REMARK 500 TRP A 87 68.99 71.03 REMARK 500 ALA A 195 -106.59 -153.21 REMARK 500 LYS A 284 -40.00 4.93 REMARK 500 ARG A 296 125.98 -37.46 REMARK 500 ASP B 84 148.50 73.18 REMARK 500 ALA B 86 30.70 -99.60 REMARK 500 TRP B 87 66.98 68.21 REMARK 500 ALA B 195 -107.07 -153.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP A 281 12.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 116 NE2 REMARK 620 2 HIS A 118 ND1 98.8 REMARK 620 3 HIS A 196 NE2 101.9 107.4 REMARK 620 4 8SH A 404 SAK 127.2 120.5 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 120 OD2 REMARK 620 2 CYS A 221 SG 112.9 REMARK 620 3 HIS A 263 NE2 87.3 106.1 REMARK 620 4 8SH A 404 SAK 105.7 121.3 118.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 285 ND1 REMARK 620 2 HOH A 703 O 98.7 REMARK 620 3 HOH A 517 O 117.0 107.4 REMARK 620 4 HIS A 170 NE2 13.6 110.4 105.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 403 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR B 115 OG1 REMARK 620 2 HOH B 577 O 111.1 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 116 NE2 REMARK 620 2 HIS B 118 ND1 101.6 REMARK 620 3 HIS B 196 NE2 99.4 106.1 REMARK 620 4 8SH B 405 SAK 129.6 117.7 98.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 120 OD2 REMARK 620 2 CYS B 221 SG 113.6 REMARK 620 3 HIS B 263 NE2 91.2 106.1 REMARK 620 4 8SH B 405 SAK 107.0 117.3 118.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 285 ND1 REMARK 620 2 HOH B 708 O 99.5 REMARK 620 3 HOH B 701 O 120.2 113.1 REMARK 620 4 HIS B 170 NE2 15.5 106.9 104.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8SH A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 8SH B 405 DBREF 5MM9 A 25 300 UNP B5KVR9 B5KVR9_PSEAI 27 266 DBREF 5MM9 B 25 300 UNP B5KVR9 B5KVR9_PSEAI 27 266 SEQADV 5MM9 GLY A 24 UNP B5KVR9 EXPRESSION TAG SEQADV 5MM9 GLY B 24 UNP B5KVR9 EXPRESSION TAG SEQRES 1 A 241 GLY VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU SEQRES 2 A 241 ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP SEQRES 3 A 241 GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY SEQRES 4 A 241 ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY SEQRES 5 A 241 ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS SEQRES 6 A 241 ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE SEQRES 7 A 241 GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS SEQRES 8 A 241 ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA SEQRES 9 A 241 GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU SEQRES 10 A 241 ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU SEQRES 11 A 241 GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY SEQRES 12 A 241 PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR SEQRES 13 A 241 ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU SEQRES 14 A 241 TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER SEQRES 15 A 241 ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO SEQRES 16 A 241 THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA SEQRES 17 A 241 GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU SEQRES 18 A 241 ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS SEQRES 19 A 241 THR ASN ARG SER VAL VAL GLU SEQRES 1 B 241 GLY VAL ASP SER SER GLY GLU TYR PRO THR VAL SER GLU SEQRES 2 B 241 ILE PRO VAL GLY GLU VAL ARG LEU TYR GLN ILE ALA ASP SEQRES 3 B 241 GLY VAL TRP SER HIS ILE ALA THR GLN SER PHE ASP GLY SEQRES 4 B 241 ALA VAL TYR PRO SER ASN GLY LEU ILE VAL ARG ASP GLY SEQRES 5 B 241 ASP GLU LEU LEU LEU ILE ASP THR ALA TRP GLY ALA LYS SEQRES 6 B 241 ASN THR ALA ALA LEU LEU ALA GLU ILE GLU LYS GLN ILE SEQRES 7 B 241 GLY LEU PRO VAL THR ARG ALA VAL SER THR HIS PHE HIS SEQRES 8 B 241 ASP ASP ARG VAL GLY GLY VAL ASP VAL LEU ARG ALA ALA SEQRES 9 B 241 GLY VAL ALA THR TYR ALA SER PRO SER THR ARG ARG LEU SEQRES 10 B 241 ALA GLU VAL GLU GLY ASN GLU ILE PRO THR HIS SER LEU SEQRES 11 B 241 GLU GLY LEU SER SER SER GLY ASP ALA VAL ARG PHE GLY SEQRES 12 B 241 PRO VAL GLU LEU PHE TYR PRO GLY ALA ALA HIS SER THR SEQRES 13 B 241 ASP ASN LEU VAL VAL TYR VAL PRO SER ALA SER VAL LEU SEQRES 14 B 241 TYR GLY GLY CYS ALA ILE TYR GLU LEU SER ARG THR SER SEQRES 15 B 241 ALA GLY ASN VAL ALA ASP ALA ASP LEU ALA GLU TRP PRO SEQRES 16 B 241 THR SER ILE GLU ARG ILE GLN GLN HIS TYR PRO GLU ALA SEQRES 17 B 241 GLN PHE VAL ILE PRO GLY HIS GLY LEU PRO GLY GLY LEU SEQRES 18 B 241 ASP LEU LEU LYS HIS THR THR ASN VAL VAL LYS ALA HIS SEQRES 19 B 241 THR ASN ARG SER VAL VAL GLU HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET 8SH A 404 45 HET ZN B 401 1 HET ZN B 402 1 HET MG B 403 1 HET ZN B 404 1 HET 8SH B 405 45 HETNAM ZN ZINC ION HETNAM 8SH (2~{R})-2-DIETHOXYPHOSPHORYL-5-PHENYL-PENTANE-1-THIOL HETNAM MG MAGNESIUM ION FORMUL 3 ZN 6(ZN 2+) FORMUL 6 8SH 2(C15 H25 O3 P S) FORMUL 9 MG MG 2+ FORMUL 12 HOH *553(H2 O) HELIX 1 AA1 THR A 33 ILE A 37 5 5 HELIX 2 AA2 GLY A 88 ILE A 104 1 16 HELIX 3 AA3 HIS A 118 GLY A 123 1 6 HELIX 4 AA4 GLY A 124 ALA A 131 1 8 HELIX 5 AA5 SER A 139 GLY A 150 1 12 HELIX 6 AA6 CYS A 221 ILE A 223 5 3 HELIX 7 AA7 GLU A 241 TYR A 253 1 13 HELIX 8 AA8 LEU A 280 ASN A 295 1 16 HELIX 9 AA9 THR B 33 ILE B 37 5 5 HELIX 10 AB1 GLY B 88 ILE B 104 1 16 HELIX 11 AB2 HIS B 118 GLY B 123 1 6 HELIX 12 AB3 GLY B 124 ALA B 131 1 8 HELIX 13 AB4 SER B 139 GLY B 150 1 12 HELIX 14 AB5 CYS B 221 ILE B 223 5 3 HELIX 15 AB6 GLU B 241 TYR B 253 1 13 HELIX 16 AB7 LEU B 280 ASN B 295 1 16 SHEET 1 AA1 7 ARG A 43 ALA A 49 0 SHEET 2 AA1 7 VAL A 52 PHE A 61 -1 O ILE A 56 N ARG A 43 SHEET 3 AA1 7 ALA A 64 ASP A 76 -1 O ALA A 64 N PHE A 61 SHEET 4 AA1 7 GLU A 79 ILE A 83 -1 O ILE A 83 N LEU A 72 SHEET 5 AA1 7 VAL A 109 VAL A 113 1 O VAL A 113 N LEU A 82 SHEET 6 AA1 7 ALA A 135 ALA A 138 1 O ALA A 135 N ALA A 112 SHEET 7 AA1 7 HIS A 170 SER A 171 1 O HIS A 170 N THR A 136 SHEET 1 AA2 5 ASP A 180 PHE A 184 0 SHEET 2 AA2 5 VAL A 187 TYR A 191 -1 O LEU A 189 N VAL A 182 SHEET 3 AA2 5 VAL A 202 VAL A 205 -1 O VAL A 202 N PHE A 190 SHEET 4 AA2 5 VAL A 216 GLY A 220 -1 O TYR A 218 N VAL A 203 SHEET 5 AA2 5 PHE A 258 PRO A 261 1 O PHE A 258 N LEU A 217 SHEET 1 AA3 7 ARG B 43 ALA B 49 0 SHEET 2 AA3 7 VAL B 52 PHE B 61 -1 O ILE B 56 N ARG B 43 SHEET 3 AA3 7 ALA B 64 ASP B 76 -1 O ALA B 64 N PHE B 61 SHEET 4 AA3 7 GLU B 79 ILE B 83 -1 O ILE B 83 N LEU B 72 SHEET 5 AA3 7 VAL B 109 VAL B 113 1 O ARG B 111 N LEU B 82 SHEET 6 AA3 7 ALA B 135 ALA B 138 1 O ALA B 135 N ALA B 112 SHEET 7 AA3 7 HIS B 170 SER B 171 1 O HIS B 170 N THR B 136 SHEET 1 AA4 5 ASP B 180 PHE B 184 0 SHEET 2 AA4 5 VAL B 187 TYR B 191 -1 O LEU B 189 N VAL B 182 SHEET 3 AA4 5 VAL B 202 VAL B 205 -1 O TYR B 204 N GLU B 188 SHEET 4 AA4 5 VAL B 216 GLY B 220 -1 O TYR B 218 N VAL B 203 SHEET 5 AA4 5 PHE B 258 PRO B 261 1 O PHE B 258 N LEU B 217 LINK NE2 HIS A 116 ZN ZN A 401 1555 1555 2.09 LINK ND1 HIS A 118 ZN ZN A 401 1555 1555 1.97 LINK OD2 ASP A 120 ZN ZN A 402 1555 1555 1.99 LINK NE2 HIS A 196 ZN ZN A 401 1555 1555 2.00 LINK SG CYS A 221 ZN ZN A 402 1555 1555 2.20 LINK NE2 HIS A 263 ZN ZN A 402 1555 1555 2.11 LINK ND1 HIS A 285 ZN ZN A 403 1555 1555 2.11 LINK OG1 THR B 115 MG MG B 403 1555 1555 2.72 LINK NE2 HIS B 116 ZN ZN B 401 1555 1555 2.06 LINK ND1 HIS B 118 ZN ZN B 401 1555 1555 1.91 LINK OD2 ASP B 120 ZN ZN B 402 1555 1555 1.97 LINK NE2 HIS B 196 ZN ZN B 401 1555 1555 2.07 LINK SG CYS B 221 ZN ZN B 402 1555 1555 2.24 LINK NE2 HIS B 263 ZN ZN B 402 1555 1555 2.08 LINK ND1 HIS B 285 ZN ZN B 404 1555 1555 2.06 LINK ZN ZN A 401 SAK 8SH A 404 1555 1555 2.34 LINK ZN ZN A 402 SAK 8SH A 404 1555 1555 2.10 LINK ZN ZN A 403 O HOH A 703 1555 1555 2.26 LINK ZN ZN A 403 O HOH A 517 1555 1555 2.41 LINK ZN ZN B 401 SAK 8SH B 405 1555 1555 2.30 LINK ZN ZN B 402 SAK 8SH B 405 1555 1555 2.31 LINK MG MG B 403 O HOH B 577 1555 1555 2.70 LINK ZN ZN B 404 O HOH B 708 1555 1555 2.26 LINK ZN ZN B 404 O HOH B 701 1555 1555 2.28 LINK NE2 HIS A 170 ZN ZN A 403 1555 4545 2.28 LINK NE2 HIS B 170 ZN ZN B 404 1555 4554 1.97 SITE 1 AC1 5 HIS A 116 HIS A 118 HIS A 196 ZN A 402 SITE 2 AC1 5 8SH A 404 SITE 1 AC2 5 ASP A 120 CYS A 221 HIS A 263 ZN A 401 SITE 2 AC2 5 8SH A 404 SITE 1 AC3 4 HIS A 170 HIS A 285 HOH A 517 HOH A 703 SITE 1 AC4 12 PHE A 61 TYR A 67 TRP A 87 HIS A 118 SITE 2 AC4 12 ASP A 120 HIS A 196 ARG A 228 ASN A 233 SITE 3 AC4 12 HIS A 263 ZN A 401 ZN A 402 HOH A 640 SITE 1 AC5 4 HIS B 116 HIS B 118 HIS B 196 8SH B 405 SITE 1 AC6 5 ASP B 120 ARG B 121 CYS B 221 HIS B 263 SITE 2 AC6 5 8SH B 405 SITE 1 AC7 5 THR B 115 HIS B 116 GLY B 220 CYS B 221 SITE 2 AC7 5 HOH B 577 SITE 1 AC8 4 HIS B 170 HIS B 285 HOH B 701 HOH B 708 SITE 1 AC9 13 ASP A 62 PHE B 61 TYR B 67 TRP B 87 SITE 2 AC9 13 HIS B 118 ASP B 119 ASP B 120 HIS B 196 SITE 3 AC9 13 ARG B 228 ASN B 233 HIS B 263 ZN B 401 SITE 4 AC9 13 ZN B 402 CRYST1 101.109 79.070 67.471 90.00 130.26 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009890 0.000000 0.008375 0.00000 SCALE2 0.000000 0.012647 0.000000 0.00000 SCALE3 0.000000 0.000000 0.019422 0.00000 MASTER 491 0 9 16 24 0 18 6 0 0 0 38 END