HEADER STRUCTURAL PROTEIN 25-OCT-16 5M6S TITLE FOLDING INTERMEDIATE OF SPECTRIN R16 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SPECTRIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS SPECTRIN, R16, STRUCTURAL PROTEIN EXPDTA ELECTRON MICROSCOPY AUTHOR O.B.NILSSON,A.A.NICKSON,J.CLARKE REVDAT 5 02-AUG-17 5M6S 1 REVDAT 4 15-MAR-17 5M6S 1 JRNL REVDAT 3 01-FEB-17 5M6S 1 JRNL REVDAT 2 25-JAN-17 5M6S 1 JRNL REVDAT 1 11-JAN-17 5M6S 0 JRNL AUTH O.B.NILSSON,A.A.NICKSON,J.J.HOLLINS,S.WICKLES,A.STEWARD, JRNL AUTH 2 R.BECKMANN,G.VON HEIJNE,J.CLARKE JRNL TITL COTRANSLATIONAL FOLDING OF SPECTRIN DOMAINS VIA PARTIALLY JRNL TITL 2 STRUCTURED STATES. JRNL REF NAT. STRUCT. MOL. BIOL. V. 24 221 2017 JRNL REFN ESSN 1545-9985 JRNL PMID 28112730 JRNL DOI 10.1038/NSMB.3355 REMARK 2 REMARK 2 RESOLUTION. 4.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 SOFTWARE PACKAGES : EM-TOOLS, CTFFIND, SPIDER, SPIDER, REMARK 3 SPIDER, SPIDER REMARK 3 RECONSTRUCTION SCHEMA : NULL REMARK 3 REMARK 3 EM MAP-MODEL FITTING AND REFINEMENT REMARK 3 PDB ENTRY : NULL REMARK 3 REFINEMENT SPACE : NULL REMARK 3 REFINEMENT PROTOCOL : RIGID BODY FIT REMARK 3 REFINEMENT TARGET : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE : NULL REMARK 3 REMARK 3 FITTING PROCEDURE : NULL REMARK 3 REMARK 3 EM IMAGE RECONSTRUCTION STATISTICS REMARK 3 NOMINAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 ACTUAL PIXEL SIZE (ANGSTROMS) : NULL REMARK 3 EFFECTIVE RESOLUTION (ANGSTROMS) : 4.800 REMARK 3 NUMBER OF PARTICLES : 46067 REMARK 3 CTF CORRECTION METHOD : NONE REMARK 3 REMARK 3 EM RECONSTRUCTION MAGNIFICATION CALIBRATION: NULL REMARK 3 REMARK 3 OTHER DETAILS: TO EXCLUDE POTENTIAL OVERFITTING, THE DATA WERE REMARK 3 PROCESSED USING A FREQUENCY LIMITED REFINEMENT PROTOCOL BY REMARK 3 TRUNCATING HIGH FREQUENCIES (LOW-PASS FILTER AT 8 A) REMARK 4 REMARK 4 5M6S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 26-OCT-16. REMARK 100 THE DEPOSITION ID IS D_1200002033. REMARK 245 REMARK 245 EXPERIMENTAL DETAILS REMARK 245 RECONSTRUCTION METHOD : SINGLE PARTICLE REMARK 245 SPECIMEN TYPE : NULL REMARK 245 REMARK 245 ELECTRON MICROSCOPE SAMPLE REMARK 245 SAMPLE TYPE : PARTICLE REMARK 245 PARTICLE TYPE : POINT REMARK 245 NAME OF SAMPLE : SPECTRIN FOLDING INTERMEDIATE REMARK 245 BOUND TO 70S RIBOSOME REMARK 245 SAMPLE CONCENTRATION (MG ML-1) : NULL REMARK 245 SAMPLE SUPPORT DETAILS : NULL REMARK 245 SAMPLE VITRIFICATION DETAILS : NULL REMARK 245 SAMPLE BUFFER : NULL REMARK 245 PH : 7.40 REMARK 245 SAMPLE DETAILS : NULL REMARK 245 REMARK 245 DATA ACQUISITION REMARK 245 DATE OF EXPERIMENT : NULL REMARK 245 NUMBER OF MICROGRAPHS-IMAGES : NULL REMARK 245 TEMPERATURE (KELVIN) : NULL REMARK 245 MICROSCOPE MODEL : FEI TITAN KRIOS REMARK 245 DETECTOR TYPE : FEI FALCON II (4K X 4K) REMARK 245 MINIMUM DEFOCUS (NM) : NULL REMARK 245 MAXIMUM DEFOCUS (NM) : NULL REMARK 245 MINIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 MAXIMUM TILT ANGLE (DEGREES) : NULL REMARK 245 NOMINAL CS : NULL REMARK 245 IMAGING MODE : BRIGHT FIELD REMARK 245 ELECTRON DOSE (ELECTRONS NM**-2) : 2.40 REMARK 245 ILLUMINATION MODE : SPOT SCAN REMARK 245 NOMINAL MAGNIFICATION : NULL REMARK 245 CALIBRATED MAGNIFICATION : NULL REMARK 245 SOURCE : FIELD EMISSION GUN REMARK 245 ACCELERATION VOLTAGE (KV) : 300 REMARK 245 IMAGING DETAILS : NULL REMARK 247 REMARK 247 ELECTRON MICROSCOPY REMARK 247 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM ELECTRON REMARK 247 MICROSCOPY DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE REMARK 247 THAT CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES REMARK 247 ON THESE RECORDS ARE MEANINGLESS EXCEPT FOR THE CALCULATION REMARK 247 OF THE STRUCTURE FACTORS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 0 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A -25 REMARK 465 GLY A -24 REMARK 465 HIS A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 ASP A -15 REMARK 465 TYR A -14 REMARK 465 ASP A -13 REMARK 465 ILE A -12 REMARK 465 PRO A -11 REMARK 465 THR A -10 REMARK 465 THR A -9 REMARK 465 LEU A -8 REMARK 465 GLU A -7 REMARK 465 VAL A -6 REMARK 465 LEU A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 GLY A -2 REMARK 465 PRO A -1 REMARK 465 GLY A 0 REMARK 465 THR A 1 REMARK 465 LYS A 2 REMARK 465 LEU A 3 REMARK 465 ASN A 4 REMARK 465 GLU A 5 REMARK 465 SER A 6 REMARK 465 HIS A 7 REMARK 465 ARG A 8 REMARK 465 LEU A 9 REMARK 465 ARG A 108 REMARK 465 LEU A 109 REMARK 465 GLU A 110 REMARK 465 SER A 111 REMARK 465 GLY A 112 REMARK 465 SER A 113 REMARK 465 GLY A 114 REMARK 465 SER A 115 REMARK 465 GLY A 116 REMARK 465 SER A 117 REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 PRO A 120 REMARK 465 ASN A 121 REMARK 465 ILE A 122 REMARK 465 LEU A 123 REMARK 465 HIS A 124 REMARK 465 ILE A 125 REMARK 465 SER A 126 REMARK 465 VAL A 127 REMARK 465 THR A 128 REMARK 465 SER A 129 REMARK 465 LYS A 130 REMARK 465 TRP A 131 REMARK 465 PHE A 132 REMARK 465 ASN A 133 REMARK 465 ILE A 134 REMARK 465 ASP A 135 REMARK 465 ASN A 136 REMARK 465 LYS A 137 REMARK 465 ILE A 138 REMARK 465 VAL A 139 REMARK 465 ASP A 140 REMARK 465 HIS A 141 REMARK 465 ARG A 142 REMARK 465 PRO A 143 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 34 -45.66 -133.86 REMARK 500 ARG A 37 118.75 71.27 REMARK 500 ASN A 77 -59.01 -153.10 REMARK 500 THR A 78 -70.35 70.88 REMARK 500 ILE A 79 93.10 -57.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: EMD-3451 RELATED DB: EMDB DBREF 5M6S A -25 143 PDB 5M6S 5M6S -25 143 SEQRES 1 A 169 HIS GLY HIS HIS HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 169 ILE PRO THR THR LEU GLU VAL LEU PHE GLN GLY PRO GLY SEQRES 3 A 169 THR LYS LEU ASN GLU SER HIS ARG LEU HIS GLN PHE PHE SEQRES 4 A 169 ARG ASP MET ASP ASP GLU GLU SER TRP ILE LYS GLU LYS SEQRES 5 A 169 LYS LEU LEU VAL SER SER GLU ASP TYR GLY ARG ASP LEU SEQRES 6 A 169 THR GLY VAL GLN ASN LEU ARG LYS LYS HIS LYS ARG LEU SEQRES 7 A 169 GLU ALA GLU LEU ALA ALA HIS GLU PRO ALA ILE GLN GLY SEQRES 8 A 169 VAL LEU ASP THR GLY LYS LYS LEU SER ASP ASP ASN THR SEQRES 9 A 169 ILE GLY LYS GLU GLU ILE GLN GLN ARG LEU ALA GLN PHE SEQRES 10 A 169 VAL ASP HIS TRP LYS GLU LEU LYS GLN LEU ALA ALA ALA SEQRES 11 A 169 ARG GLY GLN ARG LEU GLU SER GLY SER GLY SER GLY SER SEQRES 12 A 169 GLY GLY PRO ASN ILE LEU HIS ILE SER VAL THR SER LYS SEQRES 13 A 169 TRP PHE ASN ILE ASP ASN LYS ILE VAL ASP HIS ARG PRO HELIX 1 AA1 HIS A 10 GLU A 33 1 24 HELIX 2 AA2 ARG A 37 ASN A 77 1 41 HELIX 3 AA3 GLY A 80 GLN A 107 1 28 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MASTER 203 0 0 3 0 0 0 6 0 0 0 13 END