HEADER OXIDOREDUCTASE 08-JUL-16 5LGX TITLE STRUCTURE OF OXIDISED PENTAERYTHRITOL TETRANITRATE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PENTAERYTHRITOL TETRANITRATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTER CLOACAE; SOURCE 3 ORGANISM_TAXID: 550; SOURCE 4 GENE: ONR; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PETNR, PETN REDUCTASE, FMN, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.KWON,O.M.SMITH,P.C.E.MOODY REVDAT 2 01-MAR-17 5LGX 1 JRNL REVDAT 1 15-FEB-17 5LGX 0 JRNL AUTH H.KWON,O.SMITH,E.L.RAVEN,P.C.MOODY JRNL TITL COMBINING X-RAY AND NEUTRON CRYSTALLOGRAPHY WITH JRNL TITL 2 SPECTROSCOPY. JRNL REF ACTA CRYSTALLOGR D STRUCT V. 73 141 2017 JRNL REF 2 BIOL JRNL REFN ISSN 2059-7983 JRNL PMID 28177310 JRNL DOI 10.1107/S2059798316016314 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 50507 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2715 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.53 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3118 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.19 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 163 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2769 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.64 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.27000 REMARK 3 B22 (A**2) : 0.29000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.076 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.083 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.553 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3048 ; 0.020 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2892 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4167 ; 2.082 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6648 ; 1.123 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 6.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 142 ;41.563 ;23.732 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 488 ;14.033 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;15.734 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 453 ; 0.133 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3601 ; 0.014 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 706 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1541 ; 1.052 ; 0.837 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1540 ; 1.046 ; 0.836 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1954 ; 1.599 ; 1.256 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1955 ; 1.598 ; 1.256 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1507 ; 1.631 ; 0.973 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1508 ; 1.631 ; 0.975 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2211 ; 2.484 ; 1.401 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4268 ; 5.584 ; 9.275 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4269 ; 5.584 ; 9.280 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5LGX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-JUL-16. REMARK 100 THE DEPOSITION ID IS D_1200000713. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 53305 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.490 REMARK 200 RESOLUTION RANGE LOW (A) : 20.820 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.13000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.49 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.52 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.44000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 1H50 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25 % PEG 3000, 0.1 M SODIUM CITRATE, REMARK 280 0.1 M CACODYLATE PH 6.2, 17 % ISOPROPANOL, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 28.38000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 44.28700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.29350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 44.28700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 28.38000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.29350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 15.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 279 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 832 O HOH A 850 1.29 REMARK 500 O HOH A 606 O HOH A 795 1.32 REMARK 500 O HOH A 858 O HOH A 899 1.63 REMARK 500 O HOH A 603 O HOH A 748 1.68 REMARK 500 O HOH A 560 O HOH A 597 1.71 REMARK 500 O HOH A 516 O HOH A 883 1.72 REMARK 500 O HOH A 609 O HOH A 830 1.83 REMARK 500 OE2 GLU A 43 O HOH A 501 1.84 REMARK 500 NZ LYS A 85 O HOH A 502 1.84 REMARK 500 O HOH A 597 O HOH A 843 1.86 REMARK 500 O HOH A 788 O HOH A 932 1.86 REMARK 500 ND2 ASN A 242 O HOH A 503 1.87 REMARK 500 O HOH A 949 O HOH A 1089 1.98 REMARK 500 O HOH A 701 O HOH A 824 1.99 REMARK 500 OE1 GLN A 337 O HOH A 504 2.07 REMARK 500 O HOH A 515 O HOH A 899 2.07 REMARK 500 O HOH A 984 O HOH A 1101 2.10 REMARK 500 O HOH A 794 O HOH A 886 2.12 REMARK 500 O HOH A 1081 O HOH A 1099 2.13 REMARK 500 O HOH A 740 O HOH A 855 2.16 REMARK 500 OD2 ASP A 94 O HOH A 505 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 795 O HOH A 974 3555 1.78 REMARK 500 O HOH A 740 O HOH A 788 3545 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 19 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 ASP A 94 CB - CG - OD1 ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 130 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ASP A 135 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 210 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG A 210 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ASP A 228 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 292 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 225 -106.59 -113.16 REMARK 500 VAL A 243 157.64 173.95 REMARK 500 VAL A 243 129.88 174.63 REMARK 500 ASP A 331 47.00 -105.22 REMARK 500 TYR A 358 -62.50 -130.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 2 GLU A 3 -145.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1116 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A1117 DISTANCE = 7.02 ANGSTROMS REMARK 525 HOH A1118 DISTANCE = 7.05 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue FMN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue IPA A 405 DBREF 5LGX A 2 364 UNP P71278 P71278_ENTCL 3 365 SEQRES 1 A 363 ALA GLU LYS LEU PHE THR PRO LEU LYS VAL GLY ALA VAL SEQRES 2 A 363 THR ALA PRO ASN ARG VAL PHE MET ALA PRO LEU THR ARG SEQRES 3 A 363 LEU ARG SER ILE GLU PRO GLY ASP ILE PRO THR PRO LEU SEQRES 4 A 363 MET GLY GLU TYR TYR ARG GLN ARG ALA SER ALA GLY LEU SEQRES 5 A 363 ILE ILE SER GLU ALA THR GLN ILE SER ALA GLN ALA LYS SEQRES 6 A 363 GLY TYR ALA GLY ALA PRO GLY LEU HIS SER PRO GLU GLN SEQRES 7 A 363 ILE ALA ALA TRP LYS LYS ILE THR ALA GLY VAL HIS ALA SEQRES 8 A 363 GLU ASP GLY ARG ILE ALA VAL GLN LEU TRP HIS THR GLY SEQRES 9 A 363 ARG ILE SER HIS SER SER ILE GLN PRO GLY GLY GLN ALA SEQRES 10 A 363 PRO VAL SER ALA SER ALA LEU ASN ALA ASN THR ARG THR SEQRES 11 A 363 SER LEU ARG ASP GLU ASN GLY ASN ALA ILE ARG VAL ASP SEQRES 12 A 363 THR THR THR PRO ARG ALA LEU GLU LEU ASP GLU ILE PRO SEQRES 13 A 363 GLY ILE VAL ASN ASP PHE ARG GLN ALA VAL ALA ASN ALA SEQRES 14 A 363 ARG GLU ALA GLY PHE ASP LEU VAL GLU LEU HIS SER ALA SEQRES 15 A 363 HIS GLY TYR LEU LEU HIS GLN PHE LEU SER PRO SER SER SEQRES 16 A 363 ASN GLN ARG THR ASP GLN TYR GLY GLY SER VAL GLU ASN SEQRES 17 A 363 ARG ALA ARG LEU VAL LEU GLU VAL VAL ASP ALA VAL CYS SEQRES 18 A 363 ASN GLU TRP SER ALA ASP ARG ILE GLY ILE ARG VAL SER SEQRES 19 A 363 PRO ILE GLY THR PHE GLN ASN VAL ASP ASN GLY PRO ASN SEQRES 20 A 363 GLU GLU ALA ASP ALA LEU TYR LEU ILE GLU GLU LEU ALA SEQRES 21 A 363 LYS ARG GLY ILE ALA TYR LEU HIS MET SER GLU THR ASP SEQRES 22 A 363 LEU ALA GLY GLY LYS PRO TYR SER GLU ALA PHE ARG GLN SEQRES 23 A 363 LYS VAL ARG GLU ARG PHE HIS GLY VAL ILE ILE GLY ALA SEQRES 24 A 363 GLY ALA TYR THR ALA GLU LYS ALA GLU ASP LEU ILE GLY SEQRES 25 A 363 LYS GLY LEU ILE ASP ALA VAL ALA PHE GLY ARG ASP TYR SEQRES 26 A 363 ILE ALA ASN PRO ASP LEU VAL ALA ARG LEU GLN LYS LYS SEQRES 27 A 363 ALA GLU LEU ASN PRO GLN ARG PRO GLU SER PHE TYR GLY SEQRES 28 A 363 GLY GLY ALA GLU GLY TYR THR ASP TYR PRO SER LEU HET FMN A 401 31 HET IPA A 402 4 HET IPA A 403 4 HET IPA A 404 4 HET IPA A 405 4 HETNAM FMN FLAVIN MONONUCLEOTIDE HETNAM IPA ISOPROPYL ALCOHOL HETSYN FMN RIBOFLAVIN MONOPHOSPHATE HETSYN IPA 2-PROPANOL FORMUL 2 FMN C17 H21 N4 O9 P FORMUL 3 IPA 4(C3 H8 O) FORMUL 7 HOH *618(H2 O) HELIX 1 AA1 THR A 38 ARG A 48 1 11 HELIX 2 AA2 SER A 76 GLU A 93 1 18 HELIX 3 AA3 HIS A 109 GLN A 117 5 9 HELIX 4 AA4 GLU A 152 ASP A 154 5 3 HELIX 5 AA5 GLU A 155 ALA A 173 1 19 HELIX 6 AA6 TYR A 186 SER A 193 1 8 HELIX 7 AA7 SER A 206 ALA A 211 1 6 HELIX 8 AA8 ALA A 211 TRP A 225 1 15 HELIX 9 AA9 SER A 226 ASP A 228 5 3 HELIX 10 AB1 ASN A 248 ARG A 263 1 16 HELIX 11 AB2 SER A 282 PHE A 293 1 12 HELIX 12 AB3 THR A 304 LYS A 314 1 11 HELIX 13 AB4 GLY A 323 ASN A 329 1 7 HELIX 14 AB5 ASP A 331 LYS A 339 1 9 HELIX 15 AB6 ARG A 346 PHE A 350 5 5 SHEET 1 AA1 2 LEU A 9 VAL A 11 0 SHEET 2 AA1 2 VAL A 14 ALA A 16 -1 O VAL A 14 N VAL A 11 SHEET 1 AA2 9 VAL A 20 MET A 22 0 SHEET 2 AA2 9 ILE A 54 GLN A 60 1 O ILE A 55 N MET A 22 SHEET 3 AA2 9 ILE A 97 TRP A 102 1 O ALA A 98 N SER A 56 SHEET 4 AA2 9 LEU A 177 SER A 182 1 O GLU A 179 N VAL A 99 SHEET 5 AA2 9 ILE A 230 VAL A 234 1 O GLY A 231 N VAL A 178 SHEET 6 AA2 9 TYR A 267 SER A 271 1 O HIS A 269 N ILE A 232 SHEET 7 AA2 9 VAL A 296 ALA A 300 1 O ILE A 298 N MET A 270 SHEET 8 AA2 9 ALA A 319 PHE A 322 1 O ALA A 319 N GLY A 299 SHEET 9 AA2 9 VAL A 20 MET A 22 1 N PHE A 21 O VAL A 320 SHEET 1 AA3 2 VAL A 120 SER A 121 0 SHEET 2 AA3 2 ARG A 149 ALA A 150 1 O ARG A 149 N SER A 121 SHEET 1 AA4 2 ARG A 130 ARG A 134 0 SHEET 2 AA4 2 ALA A 140 ASP A 144 -1 O VAL A 143 N THR A 131 SHEET 1 AA5 2 THR A 239 PHE A 240 0 SHEET 2 AA5 2 VAL A 243 ASP A 244 -1 O VAL A 243 N PHE A 240 CISPEP 1 GLU A 32 PRO A 33 0 -0.36 SITE 1 AC1 20 ALA A 23 PRO A 24 LEU A 25 THR A 26 SITE 2 AC1 20 ALA A 58 GLN A 100 HIS A 181 HIS A 184 SITE 3 AC1 20 ARG A 233 LEU A 275 ALA A 302 GLY A 323 SITE 4 AC1 20 ARG A 324 TYR A 351 IPA A 402 IPA A 405 SITE 5 AC1 20 HOH A 563 HOH A 640 HOH A 697 HOH A 757 SITE 1 AC2 6 HIS A 184 THR A 273 ASP A 274 LEU A 275 SITE 2 AC2 6 FMN A 401 HOH A 719 SITE 1 AC3 6 TYR A 255 GLU A 258 GLU A 259 HOH A 544 SITE 2 AC3 6 HOH A 662 HOH A 928 SITE 1 AC4 4 ARG A 130 HOH A 967 HOH A1002 HOH A1087 SITE 1 AC5 8 THR A 26 TYR A 68 TYR A 186 TYR A 351 SITE 2 AC5 8 FMN A 401 HOH A 508 HOH A 520 HOH A 879 CRYST1 56.760 68.587 88.574 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017618 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014580 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011290 0.00000 MASTER 392 0 5 15 17 0 12 6 0 0 0 28 END