HEADER TRANSCRIPTION/DNA 23-JUN-16 5KL5 TITLE WILMS TUMOR PROTEIN (WT1) ZNF2-4 Q369H IN COMPLEX WITH CARBOXYLATED TITLE 2 DNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: WILMS TUMOR PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 333-420; COMPND 5 SYNONYM: WT33; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: DNA (5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*(1CC)P*GP*T)-3'); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*CP*GP*C)-3'); COMPND 14 CHAIN: C; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: WT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL CODON PLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PGEX-6P-1; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PXC1305; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 MOL_ID: 3; SOURCE 16 SYNTHETIC: YES; SOURCE 17 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 18 ORGANISM_TAXID: 32630 KEYWDS WILMS TUMOR PROTEIN, WT1, ZINC FINGER, 5-CARBOXYL CYTOSINE, KEYWDS 2 TRANSCRIPTION-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.HASHIMOTO,X.CHENG REVDAT 6 24-JUN-20 5KL5 1 ATOM REVDAT 5 25-DEC-19 5KL5 1 REMARK REVDAT 4 27-SEP-17 5KL5 1 REMARK REVDAT 3 14-DEC-16 5KL5 1 JRNL REVDAT 2 21-SEP-16 5KL5 1 JRNL REVDAT 1 14-SEP-16 5KL5 0 JRNL AUTH H.HASHIMOTO,X.ZHANG,Y.ZHENG,G.G.WILSON,X.CHENG JRNL TITL DENYS-DRASH SYNDROME ASSOCIATED WT1 GLUTAMINE 369 MUTANTS JRNL TITL 2 HAVE ALTERED SEQUENCE-PREFERENCES AND ALTERED RESPONSES TO JRNL TITL 3 EPIGENETIC MODIFICATIONS. JRNL REF NUCLEIC ACIDS RES. V. 44 10165 2016 JRNL REFN ESSN 1362-4962 JRNL PMID 27596598 JRNL DOI 10.1093/NAR/GKW766 REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (DEV_2400: ???) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.8 REMARK 3 NUMBER OF REFLECTIONS : 8708 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 437 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.2654 - 3.3004 1.00 2897 153 0.1766 0.2230 REMARK 3 2 3.3004 - 2.6202 1.00 2791 148 0.2118 0.2859 REMARK 3 3 2.6202 - 2.2891 0.94 2583 136 0.2199 0.2652 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 1297 REMARK 3 ANGLE : 0.659 1814 REMARK 3 CHIRALITY : 0.036 182 REMARK 3 PLANARITY : 0.003 160 REMARK 3 DIHEDRAL : 20.619 700 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 349:377) REMARK 3 ORIGIN FOR THE GROUP (A): 266.3451 -46.2075-100.7870 REMARK 3 T TENSOR REMARK 3 T11: 0.3114 T22: 0.3258 REMARK 3 T33: 0.3042 T12: -0.0020 REMARK 3 T13: 0.0375 T23: -0.0058 REMARK 3 L TENSOR REMARK 3 L11: 2.1475 L22: 1.8638 REMARK 3 L33: 2.1112 L12: -1.3983 REMARK 3 L13: -0.2155 L23: 0.5685 REMARK 3 S TENSOR REMARK 3 S11: 0.1615 S12: 0.1001 S13: 0.3904 REMARK 3 S21: -0.3336 S22: 0.0434 S23: -0.2012 REMARK 3 S31: -0.1330 S32: 0.1849 S33: -0.1876 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 378:436) REMARK 3 ORIGIN FOR THE GROUP (A): 270.7054 -67.0127 -85.9231 REMARK 3 T TENSOR REMARK 3 T11: 0.2120 T22: 0.2619 REMARK 3 T33: 0.2636 T12: 0.0091 REMARK 3 T13: 0.0283 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 1.4874 L22: 1.1540 REMARK 3 L33: 1.1610 L12: 0.5392 REMARK 3 L13: 0.5090 L23: -0.5395 REMARK 3 S TENSOR REMARK 3 S11: -0.0164 S12: 0.0538 S13: -0.1721 REMARK 3 S21: -0.0050 S22: -0.0039 S23: -0.0693 REMARK 3 S31: 0.0519 S32: -0.0174 S33: 0.0049 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN B AND RESID 1:6) REMARK 3 ORIGIN FOR THE GROUP (A): 267.6298 -60.1865 -83.0661 REMARK 3 T TENSOR REMARK 3 T11: 0.3359 T22: 0.2767 REMARK 3 T33: 0.2698 T12: -0.0127 REMARK 3 T13: 0.0160 T23: 0.0134 REMARK 3 L TENSOR REMARK 3 L11: 2.4436 L22: 1.3611 REMARK 3 L33: 2.2800 L12: -0.8839 REMARK 3 L13: 1.3189 L23: 0.0220 REMARK 3 S TENSOR REMARK 3 S11: -0.3609 S12: -0.1983 S13: -0.1891 REMARK 3 S21: 0.1558 S22: 0.3315 S23: -0.1168 REMARK 3 S31: -0.4302 S32: -0.3605 S33: 0.0412 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 7:11) REMARK 3 ORIGIN FOR THE GROUP (A): 275.6654 -55.5626 -99.7465 REMARK 3 T TENSOR REMARK 3 T11: 0.4277 T22: 0.5312 REMARK 3 T33: 0.3516 T12: -0.0626 REMARK 3 T13: 0.0314 T23: -0.0638 REMARK 3 L TENSOR REMARK 3 L11: 0.4410 L22: 4.0093 REMARK 3 L33: 3.7374 L12: 0.2635 REMARK 3 L13: -0.0388 L23: 2.7011 REMARK 3 S TENSOR REMARK 3 S11: 0.1384 S12: -0.0564 S13: 0.4117 REMARK 3 S21: -0.9319 S22: 0.8646 S23: -0.7806 REMARK 3 S31: -0.3671 S32: 0.8074 S33: -0.7932 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN C AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): 267.8707 -62.7306-104.4707 REMARK 3 T TENSOR REMARK 3 T11: 0.5739 T22: 0.4064 REMARK 3 T33: 0.3396 T12: -0.0599 REMARK 3 T13: -0.0457 T23: 0.0599 REMARK 3 L TENSOR REMARK 3 L11: 6.0343 L22: 1.7785 REMARK 3 L33: 4.8002 L12: 1.1225 REMARK 3 L13: 1.0574 L23: -0.8774 REMARK 3 S TENSOR REMARK 3 S11: 1.2963 S12: -0.9844 S13: -0.4151 REMARK 3 S21: 0.9460 S22: -0.0017 S23: 0.3574 REMARK 3 S31: 0.1438 S32: -0.5404 S33: -0.7569 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN C AND RESID 5:11) REMARK 3 ORIGIN FOR THE GROUP (A): 273.5944 -56.5289 -86.1999 REMARK 3 T TENSOR REMARK 3 T11: 0.3824 T22: 0.3458 REMARK 3 T33: 0.2936 T12: 0.0172 REMARK 3 T13: -0.0169 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 2.5407 L22: 2.5267 REMARK 3 L33: 4.9712 L12: -0.3705 REMARK 3 L13: -1.4862 L23: 2.2281 REMARK 3 S TENSOR REMARK 3 S11: 0.0197 S12: -0.3877 S13: 0.1122 REMARK 3 S21: -0.0458 S22: 0.5387 S23: -0.0169 REMARK 3 S31: -0.2721 S32: 0.7463 S33: -0.4785 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5KL5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-16. REMARK 100 THE DEPOSITION ID IS D_1000222056. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : SI (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.289 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 10.60 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.29 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4R2R REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% (W/V) POLYETHYLENE GLYCOL 3350, REMARK 280 0.2 M AMMONIUM ACETATE, AND 0.1 M BISTRIS-HCL, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 33.74650 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.60550 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.74650 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 38.60550 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4910 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -7.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 601 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 345 REMARK 465 PRO A 346 REMARK 465 LEU A 347 REMARK 465 GLY A 348 REMARK 465 ARG A 437 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DT B 5 O4' - C1' - N1 ANGL. DEV. = 2.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 418 -79.00 -129.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 355 SG REMARK 620 2 CYS A 360 SG 115.5 REMARK 620 3 HIS A 373 NE2 107.6 106.4 REMARK 620 4 HIS A 377 NE2 115.8 111.3 98.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 385 SG REMARK 620 2 CYS A 388 SG 114.8 REMARK 620 3 HIS A 401 NE2 106.3 105.3 REMARK 620 4 HIS A 405 NE2 112.6 114.9 101.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 413 SG REMARK 620 2 CYS A 418 SG 114.3 REMARK 620 3 HIS A 431 NE2 109.2 108.2 REMARK 620 4 HIS A 435 NE2 108.2 124.5 89.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue EDO A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5KL2 RELATED DB: PDB REMARK 900 RELATED ID: 5KL3 RELATED DB: PDB REMARK 900 RELATED ID: 5KL4 RELATED DB: PDB REMARK 900 RELATED ID: 5KL6 RELATED DB: PDB REMARK 900 RELATED ID: 5KL7 RELATED DB: PDB DBREF 5KL5 A 350 437 UNP P19544 WT1_HUMAN 333 420 DBREF 5KL5 B 1 11 PDB 5KL5 5KL5 1 11 DBREF 5KL5 C 1 11 PDB 5KL5 5KL5 1 11 SEQADV 5KL5 GLY A 345 UNP P19544 EXPRESSION TAG SEQADV 5KL5 PRO A 346 UNP P19544 EXPRESSION TAG SEQADV 5KL5 LEU A 347 UNP P19544 EXPRESSION TAG SEQADV 5KL5 GLY A 348 UNP P19544 EXPRESSION TAG SEQADV 5KL5 SER A 349 UNP P19544 EXPRESSION TAG SEQADV 5KL5 HIS A 369 UNP P19544 GLN 352 ENGINEERED MUTATION SEQRES 1 A 93 GLY PRO LEU GLY SER GLU LYS PRO TYR GLN CYS ASP PHE SEQRES 2 A 93 LYS ASP CYS GLU ARG ARG PHE SER ARG SER ASP HIS LEU SEQRES 3 A 93 LYS ARG HIS GLN ARG ARG HIS THR GLY VAL LYS PRO PHE SEQRES 4 A 93 GLN CYS LYS THR CYS GLN ARG LYS PHE SER ARG SER ASP SEQRES 5 A 93 HIS LEU LYS THR HIS THR ARG THR HIS THR GLY GLU LYS SEQRES 6 A 93 PRO PHE SER CYS ARG TRP PRO SER CYS GLN LYS LYS PHE SEQRES 7 A 93 ALA ARG SER ASP GLU LEU VAL ARG HIS HIS ASN MET HIS SEQRES 8 A 93 GLN ARG SEQRES 1 B 11 DA DG DC DG DT DG DG DG 1CC DG DT SEQRES 1 C 11 DT DA 5CM DG DC DC DC DA DC DG DC HET 1CC B 9 32 HET 5CM C 3 33 HET ZN A 501 1 HET ZN A 502 1 HET ZN A 503 1 HET EDO A 504 10 HETNAM 1CC 5-CARBOXY-2'-DEOXYCYTIDINE MONOPHOSPHATE HETNAM 5CM 5-METHYL-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE HETNAM ZN ZINC ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 1CC C10 H14 N3 O9 P FORMUL 3 5CM C10 H16 N3 O7 P FORMUL 4 ZN 3(ZN 2+) FORMUL 7 EDO C2 H6 O2 FORMUL 8 HOH *86(H2 O) HELIX 1 AA1 ARG A 366 GLY A 379 1 14 HELIX 2 AA2 ARG A 394 GLY A 407 1 14 HELIX 3 AA3 ARG A 424 HIS A 435 1 12 SHEET 1 AA1 2 TYR A 353 GLN A 354 0 SHEET 2 AA1 2 ARG A 363 PHE A 364 -1 O PHE A 364 N TYR A 353 SHEET 1 AA2 2 PHE A 383 GLN A 384 0 SHEET 2 AA2 2 LYS A 391 PHE A 392 -1 O PHE A 392 N PHE A 383 SHEET 1 AA3 2 PHE A 411 SER A 412 0 SHEET 2 AA3 2 LYS A 421 PHE A 422 -1 O PHE A 422 N PHE A 411 LINK SG CYS A 355 ZN ZN A 501 1555 1555 2.30 LINK SG CYS A 360 ZN ZN A 501 1555 1555 2.29 LINK NE2 HIS A 373 ZN ZN A 501 1555 1555 2.03 LINK NE2 HIS A 377 ZN ZN A 501 1555 1555 2.06 LINK SG CYS A 385 ZN ZN A 502 1555 1555 2.29 LINK SG CYS A 388 ZN ZN A 502 1555 1555 2.27 LINK NE2 HIS A 401 ZN ZN A 502 1555 1555 2.05 LINK NE2 HIS A 405 ZN ZN A 502 1555 1555 2.01 LINK SG CYS A 413 ZN ZN A 503 1555 1555 2.28 LINK SG CYS A 418 ZN ZN A 503 1555 1555 2.29 LINK NE2 HIS A 431 ZN ZN A 503 1555 1555 2.03 LINK NE2 HIS A 435 ZN ZN A 503 1555 1555 2.04 LINK O3' DG B 8 P 1CC B 9 1555 1555 1.61 LINK O3' 1CC B 9 P DG B 10 1555 1555 1.61 LINK O3' DA C 2 P 5CM C 3 1555 1555 1.61 LINK O3' 5CM C 3 P DG C 4 1555 1555 1.61 SITE 1 AC1 4 CYS A 355 CYS A 360 HIS A 373 HIS A 377 SITE 1 AC2 4 CYS A 385 CYS A 388 HIS A 401 HIS A 405 SITE 1 AC3 4 CYS A 413 CYS A 418 HIS A 431 HIS A 435 SITE 1 AC4 5 ARG A 372 SER A 393 ARG A 394 DG B 6 SITE 2 AC4 5 HOH B 114 CRYST1 67.493 77.211 35.794 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014816 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012952 0.000000 0.00000 SCALE3 0.000000 0.000000 0.027938 0.00000 MASTER 397 0 6 3 6 0 5 6 0 0 0 10 END