HEADER SIGALING PROTEIN 15-MAY-16 5JYT TITLE NMR STRUCTURE OF FOLDSWITCH-STABLIZED KAIB FROM THERMOSYNECHOCOCCUS TITLE 2 ELONGATUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CIRCADIAN CLOCK PROTEIN KAIB; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOSYNECHOCOCCUS ELONGATUS; SOURCE 3 ORGANISM_TAXID: 197221; SOURCE 4 STRAIN: BP-1; SOURCE 5 GENE: KAIB, TLR0482; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI 'BL21-GOLD(DE3)PLYSS AG'; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 866768; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS CIRCADIAN CLOCK, METAMORPHIC PROTEIN, SIGALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR R.D.TSENG,A.L.LIWANG REVDAT 3 25-DEC-19 5JYT 1 REMARK REVDAT 2 20-SEP-17 5JYT 1 REMARK REVDAT 1 29-MAR-17 5JYT 0 JRNL AUTH R.TSENG,N.F.GOULARTE,A.CHAVAN,J.LUU,S.E.COHEN,Y.G.CHANG, JRNL AUTH 2 J.HEISLER,S.LI,A.K.MICHAEL,S.TRIPATHI,S.S.GOLDEN,A.LIWANG, JRNL AUTH 3 C.L.PARTCH JRNL TITL STRUCTURAL BASIS OF THE DAY-NIGHT TRANSITION IN A BACTERIAL JRNL TITL 2 CIRCADIAN CLOCK. JRNL REF SCIENCE V. 355 1174 2017 JRNL REFN ESSN 1095-9203 JRNL PMID 28302851 JRNL DOI 10.1126/SCIENCE.AAG2516 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR NIH 2.39 REMARK 3 AUTHORS : SCHWIETERS, KUSZEWSKI, TJANDRA AND CLORE REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JYT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000220067. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 25 REMARK 210 PH : 7 REMARK 210 IONIC STRENGTH : 0.100 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 800 UM [U-99% 13C; U-99% 15N] REMARK 210 KAIB MUTANT IN FOLDSWITCHED REMARK 210 STATE, 95% H2O/5% D2O; 800 UM [U- REMARK 210 99% 13C; U-99% 15N] KAIB MUTANT REMARK 210 IN FOLDSWITCHED STATE, 99.96% REMARK 210 D2O; 300 UM [U-99% 13C; U-99% REMARK 210 15N] KAIB MUTANT IN FOLDSWITCHED REMARK 210 STATE, 90% H2O/10% D2O; 356 UM REMARK 210 [U-99% 13C; U-99% 15N] KAIB REMARK 210 MUTANT IN FOLDSWITCHED STATE, 90% REMARK 210 H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D HNCACB; 3D HN(COCA)CB; 3D REMARK 210 HNCO; 3D HN(CA)CO; 3D HBHA(CO)NH; REMARK 210 3D H(CCO)NH; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 3D HCCH-COSY; REMARK 210 3D HCAN; 3D HCA(CO)N; 3D IPAP- REMARK 210 HNCO(CA); 2D 1H-15N HSQC; 2D 1H- REMARK 210 13C HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XIPP, MARS, NMRPIPE, X-PLOR NIH REMARK 210 2.39 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 6 -70.75 70.60 REMARK 500 2 LYS A 34 -62.09 -131.15 REMARK 500 3 ARG A 5 -70.14 -106.07 REMARK 500 4 LYS A 34 -61.48 -120.99 REMARK 500 6 LYS A 6 -67.65 69.99 REMARK 500 6 LYS A 34 -61.96 -131.20 REMARK 500 7 LYS A 34 -61.76 -120.06 REMARK 500 7 ASP A 105 -170.11 64.59 REMARK 500 8 LYS A 34 -62.31 -132.05 REMARK 500 8 ASP A 105 -175.23 66.77 REMARK 500 9 LYS A 34 -64.09 -129.91 REMARK 500 9 ASP A 102 -51.28 -163.01 REMARK 500 10 LYS A 34 -62.04 -125.78 REMARK 500 11 ARG A 5 -131.12 57.55 REMARK 500 12 ARG A 5 -68.12 -125.14 REMARK 500 13 LYS A 34 -62.13 -128.94 REMARK 500 14 LYS A 34 -61.71 -122.26 REMARK 500 14 ASP A 105 -75.77 67.96 REMARK 500 15 LYS A 34 -61.88 -130.25 REMARK 500 15 ASP A 105 -65.85 69.79 REMARK 500 16 LYS A 6 -49.03 69.63 REMARK 500 19 LYS A 34 -62.21 -129.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 30091 RELATED DB: BMRB REMARK 900 RELATED ID: 5JYV RELATED DB: PDB REMARK 900 RELATED ID: 5JYU RELATED DB: PDB DBREF 5JYT A 1 99 UNP Q79V61 KAIB_THEEB 1 99 SEQADV 5JYT ALA A 8 UNP Q79V61 TYR 8 ENGINEERED MUTATION SEQADV 5JYT ALA A 29 UNP Q79V61 ASN 29 ENGINEERED MUTATION SEQADV 5JYT ALA A 89 UNP Q79V61 GLY 89 ENGINEERED MUTATION SEQADV 5JYT ARG A 91 UNP Q79V61 ASP 91 ENGINEERED MUTATION SEQADV 5JYT ALA A 94 UNP Q79V61 TYR 94 ENGINEERED MUTATION SEQADV 5JYT TYR A 100 UNP Q79V61 EXPRESSION TAG SEQADV 5JYT LYS A 101 UNP Q79V61 EXPRESSION TAG SEQADV 5JYT ASP A 102 UNP Q79V61 EXPRESSION TAG SEQADV 5JYT ASP A 103 UNP Q79V61 EXPRESSION TAG SEQADV 5JYT ASP A 104 UNP Q79V61 EXPRESSION TAG SEQADV 5JYT ASP A 105 UNP Q79V61 EXPRESSION TAG SEQADV 5JYT LYS A 106 UNP Q79V61 EXPRESSION TAG SEQRES 1 A 106 MET ALA PRO LEU ARG LYS THR ALA VAL LEU LYS LEU TYR SEQRES 2 A 106 VAL ALA GLY ASN THR PRO ASN SER VAL ARG ALA LEU LYS SEQRES 3 A 106 THR LEU ALA ASN ILE LEU GLU LYS GLU PHE LYS GLY VAL SEQRES 4 A 106 TYR ALA LEU LYS VAL ILE ASP VAL LEU LYS ASN PRO GLN SEQRES 5 A 106 LEU ALA GLU GLU ASP LYS ILE LEU ALA THR PRO THR LEU SEQRES 6 A 106 ALA LYS VAL LEU PRO PRO PRO VAL ARG ARG ILE ILE GLY SEQRES 7 A 106 ASP LEU SER ASN ARG GLU LYS VAL LEU ILE ALA LEU ARG SEQRES 8 A 106 LEU LEU ALA GLU GLU ILE GLY ASP TYR LYS ASP ASP ASP SEQRES 9 A 106 ASP LYS HELIX 1 AA1 THR A 18 GLU A 35 1 18 HELIX 2 AA2 ASN A 50 ASP A 57 1 8 HELIX 3 AA3 ASN A 82 TYR A 100 1 19 SHEET 1 AA1 4 TYR A 40 ASP A 46 0 SHEET 2 AA1 4 ALA A 8 VAL A 14 1 N ALA A 8 O ALA A 41 SHEET 3 AA1 4 THR A 64 LEU A 69 -1 O ALA A 66 N LYS A 11 SHEET 4 AA1 4 ARG A 74 ILE A 76 -1 O ILE A 76 N LEU A 65 CISPEP 1 THR A 62 PRO A 63 1 -1.96 CISPEP 2 LEU A 69 PRO A 70 1 -1.05 CISPEP 3 PRO A 71 PRO A 72 1 0.15 CISPEP 4 THR A 62 PRO A 63 2 -2.00 CISPEP 5 LEU A 69 PRO A 70 2 -2.13 CISPEP 6 PRO A 71 PRO A 72 2 0.37 CISPEP 7 THR A 62 PRO A 63 3 -1.67 CISPEP 8 LEU A 69 PRO A 70 3 -1.08 CISPEP 9 PRO A 71 PRO A 72 3 0.32 CISPEP 10 THR A 62 PRO A 63 4 -1.61 CISPEP 11 LEU A 69 PRO A 70 4 -1.19 CISPEP 12 PRO A 71 PRO A 72 4 -0.04 CISPEP 13 THR A 62 PRO A 63 5 -2.00 CISPEP 14 LEU A 69 PRO A 70 5 -2.01 CISPEP 15 PRO A 71 PRO A 72 5 0.17 CISPEP 16 THR A 62 PRO A 63 6 -1.81 CISPEP 17 LEU A 69 PRO A 70 6 -1.93 CISPEP 18 PRO A 71 PRO A 72 6 0.53 CISPEP 19 THR A 62 PRO A 63 7 -1.75 CISPEP 20 LEU A 69 PRO A 70 7 -1.46 CISPEP 21 PRO A 71 PRO A 72 7 0.14 CISPEP 22 THR A 62 PRO A 63 8 -1.53 CISPEP 23 LEU A 69 PRO A 70 8 -1.41 CISPEP 24 PRO A 71 PRO A 72 8 0.23 CISPEP 25 THR A 62 PRO A 63 9 -1.96 CISPEP 26 LEU A 69 PRO A 70 9 -1.47 CISPEP 27 PRO A 71 PRO A 72 9 0.23 CISPEP 28 THR A 62 PRO A 63 10 -2.08 CISPEP 29 LEU A 69 PRO A 70 10 -1.33 CISPEP 30 PRO A 71 PRO A 72 10 0.46 CISPEP 31 THR A 62 PRO A 63 11 -2.03 CISPEP 32 LEU A 69 PRO A 70 11 -1.27 CISPEP 33 PRO A 71 PRO A 72 11 0.22 CISPEP 34 THR A 62 PRO A 63 12 -1.80 CISPEP 35 LEU A 69 PRO A 70 12 -1.49 CISPEP 36 PRO A 71 PRO A 72 12 0.11 CISPEP 37 THR A 62 PRO A 63 13 -1.60 CISPEP 38 LEU A 69 PRO A 70 13 -1.21 CISPEP 39 PRO A 71 PRO A 72 13 0.28 CISPEP 40 THR A 62 PRO A 63 14 -1.98 CISPEP 41 LEU A 69 PRO A 70 14 -1.59 CISPEP 42 PRO A 71 PRO A 72 14 0.41 CISPEP 43 THR A 62 PRO A 63 15 -1.68 CISPEP 44 LEU A 69 PRO A 70 15 -1.49 CISPEP 45 PRO A 71 PRO A 72 15 0.33 CISPEP 46 THR A 62 PRO A 63 16 -1.65 CISPEP 47 LEU A 69 PRO A 70 16 -1.19 CISPEP 48 PRO A 71 PRO A 72 16 0.33 CISPEP 49 THR A 62 PRO A 63 17 -1.63 CISPEP 50 LEU A 69 PRO A 70 17 -1.20 CISPEP 51 PRO A 71 PRO A 72 17 0.26 CISPEP 52 THR A 62 PRO A 63 18 -1.91 CISPEP 53 LEU A 69 PRO A 70 18 -1.20 CISPEP 54 PRO A 71 PRO A 72 18 0.09 CISPEP 55 THR A 62 PRO A 63 19 -1.76 CISPEP 56 LEU A 69 PRO A 70 19 -1.80 CISPEP 57 PRO A 71 PRO A 72 19 0.41 CISPEP 58 THR A 62 PRO A 63 20 -1.76 CISPEP 59 LEU A 69 PRO A 70 20 -1.78 CISPEP 60 PRO A 71 PRO A 72 20 0.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL ENDMDL MASTER 134 0 0 3 4 0 0 6 0 0 0 9 END