HEADER ISOMERASE 13-MAY-16 5JY4 TITLE A HIGH MAGNESIUM STRUCTURE OF THE ISOCHORISMATE SYNTHASE, ENTC COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCHORISMATE SYNTHASE ENTC; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ISOCHORISMATE MUTASE; COMPND 5 EC: 5.4.4.2; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ISOCHORISMATE SYNTHASE ENTC; COMPND 9 CHAIN: B; COMPND 10 SYNONYM: ISOCHORISMATE MUTASE; COMPND 11 EC: 5.4.4.2; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 3 ORGANISM_TAXID: 83334; SOURCE 4 GENE: ENTC, Z0735, ECS0632; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI O157:H7; SOURCE 10 ORGANISM_TAXID: 83334; SOURCE 11 GENE: ENTC, Z0735, ECS0632; SOURCE 12 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 14 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) KEYWDS ISOCHORISMATE, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.M.MENEELY,J.A.SUNDLOV,A.M.GULICK,A.L.LAMB REVDAT 4 11-DEC-19 5JY4 1 REMARK REVDAT 3 27-SEP-17 5JY4 1 REMARK REVDAT 2 10-AUG-16 5JY4 1 JRNL REVDAT 1 20-JUL-16 5JY4 0 JRNL AUTH K.M.MENEELY,J.A.SUNDLOV,A.M.GULICK,G.R.MORAN,A.L.LAMB JRNL TITL AN OPEN AND SHUT CASE: THE INTERACTION OF MAGNESIUM WITH MST JRNL TITL 2 ENZYMES. JRNL REF J.AM.CHEM.SOC. V. 138 9277 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27373320 JRNL DOI 10.1021/JACS.6B05134 REMARK 2 REMARK 2 RESOLUTION. 2.11 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (1.10_2155) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.11 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.90 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 51881 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.850 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.9046 - 5.0754 0.99 3868 155 0.2023 0.2456 REMARK 3 2 5.0754 - 4.0299 0.99 3645 147 0.1696 0.2034 REMARK 3 3 4.0299 - 3.5209 1.00 3614 144 0.1837 0.2325 REMARK 3 4 3.5209 - 3.1991 1.00 3602 144 0.2007 0.2340 REMARK 3 5 3.1991 - 2.9699 1.00 3554 143 0.2017 0.2461 REMARK 3 6 2.9699 - 2.7948 1.00 3536 142 0.2099 0.2335 REMARK 3 7 2.7948 - 2.6549 1.00 3556 142 0.2080 0.3397 REMARK 3 8 2.6549 - 2.5394 1.00 3520 142 0.2197 0.3053 REMARK 3 9 2.5394 - 2.4416 1.00 3526 141 0.2224 0.2877 REMARK 3 10 2.4416 - 2.3574 1.00 3526 141 0.2263 0.2717 REMARK 3 11 2.3574 - 2.2837 1.00 3505 141 0.2339 0.2951 REMARK 3 12 2.2837 - 2.2184 1.00 3494 139 0.2479 0.3129 REMARK 3 13 2.2184 - 2.1600 1.00 3511 141 0.2575 0.3399 REMARK 3 14 2.1600 - 2.1073 0.98 3424 138 0.2590 0.3108 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5953 REMARK 3 ANGLE : 1.273 8094 REMARK 3 CHIRALITY : 0.065 905 REMARK 3 PLANARITY : 0.009 1077 REMARK 3 DIHEDRAL : 12.349 3619 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JY4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000221406. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : LIQUID NITROGEN-COOLED DOUBLE REMARK 200 CRYSTAL SI(111) REMARK 200 OPTICS : MIRROR: RH COATED REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51991 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.110 REMARK 200 RESOLUTION RANGE LOW (A) : 38.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07400 REMARK 200 FOR THE DATA SET : 14.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.11 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : 7.50 REMARK 200 R MERGE FOR SHELL (I) : 1.03100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (1.10_2155) REMARK 200 STARTING MODEL: 3HWO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.28 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.52 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES PH 6.2, 50% PEG 200, 0.05 M REMARK 280 AMMONIUM CHLORIDE, MICROBATCH, TEMPERATURE 298.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 132.61550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 40.45350 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 66.30775 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 40.45350 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 198.92325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 40.45350 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 66.30775 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 40.45350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 40.45350 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 198.92325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 132.61550 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 THR A 3 REMARK 465 SER A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 GLU A 7 REMARK 465 GLU A 8 REMARK 465 VAL A 9 REMARK 465 GLN A 10 REMARK 465 GLN A 11 REMARK 465 THR A 12 REMARK 465 MET A 13 REMARK 465 ALA A 14 REMARK 465 LEU A 390 REMARK 465 HIS A 391 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 THR B 3 REMARK 465 SER B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 6 REMARK 465 GLU B 7 REMARK 465 GLU B 8 REMARK 465 VAL B 9 REMARK 465 GLN B 10 REMARK 465 GLN B 11 REMARK 465 THR B 12 REMARK 465 MET B 13 REMARK 465 ALA B 14 REMARK 465 ARG B 108 REMARK 465 PHE B 109 REMARK 465 THR B 110 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 383 O HOH A 501 1.54 REMARK 500 HD22 ASN A 116 OD2 ASP A 159 1.56 REMARK 500 HE ARG A 120 O HOH A 502 1.60 REMARK 500 O HOH A 571 O HOH A 582 1.83 REMARK 500 O HOH B 546 O HOH B 553 1.99 REMARK 500 O HOH A 582 O HOH A 583 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 575 O HOH B 547 1565 1.71 REMARK 500 O HOH A 568 O HOH B 509 7555 1.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 27 -83.27 -85.17 REMARK 500 SER A 87 69.68 -110.95 REMARK 500 ARG A 111 170.12 -53.60 REMARK 500 ALA A 213 140.66 -177.63 REMARK 500 ASN A 286 -14.32 -49.09 REMARK 500 SER A 287 167.16 61.43 REMARK 500 SER A 305 -68.79 -103.88 REMARK 500 PRO A 321 47.03 -89.06 REMARK 500 GLU A 325 -116.79 50.33 REMARK 500 GLU A 353 -113.39 49.93 REMARK 500 TYR B 27 -75.76 -84.00 REMARK 500 ALA B 37 128.23 -176.73 REMARK 500 PRO B 82 2.77 -69.06 REMARK 500 SER B 87 63.36 -117.18 REMARK 500 ALA B 106 76.08 -48.65 REMARK 500 ALA B 213 132.88 -174.38 REMARK 500 GLU B 255 5.05 -69.01 REMARK 500 GLU B 259 143.20 -177.86 REMARK 500 LEU B 260 110.24 -165.44 REMARK 500 SER B 305 -71.29 -102.46 REMARK 500 PRO B 321 43.84 -85.56 REMARK 500 GLU B 325 -111.76 53.95 REMARK 500 GLU B 353 -114.21 51.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 287 GLN A 288 -138.57 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 241 OE2 REMARK 620 2 GLU A 376 OE2 175.5 REMARK 620 3 HOH A 515 O 96.3 86.4 REMARK 620 4 ISC A 402 O1 88.6 89.7 164.6 REMARK 620 5 ISC A 402 O2 91.6 91.4 100.5 64.7 REMARK 620 6 HOH A 522 O 91.4 84.9 91.7 102.8 167.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 241 OE1 REMARK 620 2 GLU B 241 OE2 48.1 REMARK 620 3 GLU B 376 OE2 153.9 157.0 REMARK 620 4 ISC B 402 O1 126.5 78.9 79.6 REMARK 620 5 ISC B 402 O2 113.1 83.9 78.0 58.1 REMARK 620 6 HOH B 504 O 82.7 97.0 94.6 100.2 157.9 REMARK 620 7 HOH B 507 O 70.2 106.1 87.4 145.3 87.8 113.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ISC A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue MG B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ISC B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JY9 RELATED DB: PDB REMARK 900 RELATED ID: 5JY8 RELATED DB: PDB REMARK 900 RELATED ID: 5JXZ RELATED DB: PDB DBREF 5JY4 A 1 391 UNP P0AEJ3 ENTC_ECO57 1 391 DBREF 5JY4 B 1 391 UNP P0AEJ3 ENTC_ECO57 1 391 SEQRES 1 A 391 MET ASP THR SER LEU ALA GLU GLU VAL GLN GLN THR MET SEQRES 2 A 391 ALA THR LEU ALA PRO ASN ARG PHE PHE PHE MET SER PRO SEQRES 3 A 391 TYR ARG SER PHE THR THR SER GLY CSO PHE ALA ARG PHE SEQRES 4 A 391 ASP GLU PRO ALA VAL ASN GLY ASP SER PRO ASP SER PRO SEQRES 5 A 391 PHE GLN GLN LYS LEU ALA ALA LEU PHE ALA ASP ALA LYS SEQRES 6 A 391 ALA GLN GLY ILE LYS ASN PRO VAL MET VAL GLY ALA ILE SEQRES 7 A 391 PRO PHE ASP PRO ARG GLN PRO SER SER LEU TYR ILE PRO SEQRES 8 A 391 GLU SER TRP GLN SER PHE SER ARG GLN GLU LYS GLN ALA SEQRES 9 A 391 SER ALA ARG ARG PHE THR ARG SER GLN SER LEU ASN VAL SEQRES 10 A 391 VAL GLU ARG GLN ALA ILE PRO GLU GLN THR THR PHE GLU SEQRES 11 A 391 GLN MET VAL ALA ARG ALA ALA ALA LEU THR ALA THR PRO SEQRES 12 A 391 GLN VAL ASP LYS VAL VAL LEU SER ARG LEU ILE ASP ILE SEQRES 13 A 391 THR THR ASP ALA ALA ILE ASP SER GLY VAL LEU LEU GLU SEQRES 14 A 391 ARG LEU ILE ALA GLN ASN PRO VAL SER TYR ASN PHE HIS SEQRES 15 A 391 VAL PRO LEU ALA ASP GLY GLY VAL LEU LEU GLY ALA SER SEQRES 16 A 391 PRO GLU LEU LEU LEU ARG LYS ASP GLY GLU ARG PHE SER SEQRES 17 A 391 SER ILE PRO LEU ALA GLY SER ALA ARG ARG GLN PRO ASP SEQRES 18 A 391 GLU VAL LEU ASP ARG GLU ALA GLY ASN ARG LEU LEU ALA SEQRES 19 A 391 SER GLU LYS ASP ARG HIS GLU HIS GLU LEU VAL THR GLN SEQRES 20 A 391 ALA MET LYS GLU VAL LEU ARG GLU ARG SER SER GLU LEU SEQRES 21 A 391 HIS VAL PRO SER SER PRO GLN LEU ILE THR THR PRO THR SEQRES 22 A 391 LEU TRP HIS LEU ALA THR PRO PHE GLU GLY LYS ALA ASN SEQRES 23 A 391 SER GLN GLU ASN ALA LEU THR LEU ALA CYS LEU LEU HIS SEQRES 24 A 391 PRO THR PRO ALA LEU SER GLY PHE PRO HIS GLN ALA ALA SEQRES 25 A 391 THR GLN VAL ILE ALA GLU LEU GLU PRO PHE ASP ARG GLU SEQRES 26 A 391 LEU PHE GLY GLY ILE VAL GLY TRP CYS ASP SER GLU GLY SEQRES 27 A 391 ASN GLY GLU TRP VAL VAL THR ILE ARG CYS ALA LYS LEU SEQRES 28 A 391 ARG GLU ASN GLN VAL ARG LEU PHE ALA GLY ALA GLY ILE SEQRES 29 A 391 VAL PRO ALA SER SER PRO LEU GLY GLU TRP ARG GLU THR SEQRES 30 A 391 GLY VAL LYS LEU SER THR MET LEU ASN VAL PHE GLY LEU SEQRES 31 A 391 HIS SEQRES 1 B 391 MET ASP THR SER LEU ALA GLU GLU VAL GLN GLN THR MET SEQRES 2 B 391 ALA THR LEU ALA PRO ASN ARG PHE PHE PHE MET SER PRO SEQRES 3 B 391 TYR ARG SER PHE THR THR SER GLY CYS PHE ALA ARG PHE SEQRES 4 B 391 ASP GLU PRO ALA VAL ASN GLY ASP SER PRO ASP SER PRO SEQRES 5 B 391 PHE GLN GLN LYS LEU ALA ALA LEU PHE ALA ASP ALA LYS SEQRES 6 B 391 ALA GLN GLY ILE LYS ASN PRO VAL MET VAL GLY ALA ILE SEQRES 7 B 391 PRO PHE ASP PRO ARG GLN PRO SER SER LEU TYR ILE PRO SEQRES 8 B 391 GLU SER TRP GLN SER PHE SER ARG GLN GLU LYS GLN ALA SEQRES 9 B 391 SER ALA ARG ARG PHE THR ARG SER GLN SER LEU ASN VAL SEQRES 10 B 391 VAL GLU ARG GLN ALA ILE PRO GLU GLN THR THR PHE GLU SEQRES 11 B 391 GLN MET VAL ALA ARG ALA ALA ALA LEU THR ALA THR PRO SEQRES 12 B 391 GLN VAL ASP LYS VAL VAL LEU SER ARG LEU ILE ASP ILE SEQRES 13 B 391 THR THR ASP ALA ALA ILE ASP SER GLY VAL LEU LEU GLU SEQRES 14 B 391 ARG LEU ILE ALA GLN ASN PRO VAL SER TYR ASN PHE HIS SEQRES 15 B 391 VAL PRO LEU ALA ASP GLY GLY VAL LEU LEU GLY ALA SER SEQRES 16 B 391 PRO GLU LEU LEU LEU ARG LYS ASP GLY GLU ARG PHE SER SEQRES 17 B 391 SER ILE PRO LEU ALA GLY SER ALA ARG ARG GLN PRO ASP SEQRES 18 B 391 GLU VAL LEU ASP ARG GLU ALA GLY ASN ARG LEU LEU ALA SEQRES 19 B 391 SER GLU LYS ASP ARG HIS GLU HIS GLU LEU VAL THR GLN SEQRES 20 B 391 ALA MET LYS GLU VAL LEU ARG GLU ARG SER SER GLU LEU SEQRES 21 B 391 HIS VAL PRO SER SER PRO GLN LEU ILE THR THR PRO THR SEQRES 22 B 391 LEU TRP HIS LEU ALA THR PRO PHE GLU GLY LYS ALA ASN SEQRES 23 B 391 SER GLN GLU ASN ALA LEU THR LEU ALA CYS LEU LEU HIS SEQRES 24 B 391 PRO THR PRO ALA LEU SER GLY PHE PRO HIS GLN ALA ALA SEQRES 25 B 391 THR GLN VAL ILE ALA GLU LEU GLU PRO PHE ASP ARG GLU SEQRES 26 B 391 LEU PHE GLY GLY ILE VAL GLY TRP CYS ASP SER GLU GLY SEQRES 27 B 391 ASN GLY GLU TRP VAL VAL THR ILE ARG CYS ALA LYS LEU SEQRES 28 B 391 ARG GLU ASN GLN VAL ARG LEU PHE ALA GLY ALA GLY ILE SEQRES 29 B 391 VAL PRO ALA SER SER PRO LEU GLY GLU TRP ARG GLU THR SEQRES 30 B 391 GLY VAL LYS LEU SER THR MET LEU ASN VAL PHE GLY LEU SEQRES 31 B 391 HIS MODRES 5JY4 CSO A 35 CYS MODIFIED RESIDUE HET CSO A 35 11 HET MG A 401 1 HET ISC A 402 24 HET MG B 401 1 HET ISC B 402 24 HETNAM CSO S-HYDROXYCYSTEINE HETNAM MG MAGNESIUM ION HETNAM ISC (5S,6S)-5-[(1-CARBOXYETHENYL)OXY]-6-HYDROXYCYCLOHEXA-1, HETNAM 2 ISC 3-DIENE-1-CARBOXYLIC ACID HETSYN ISC ISOCHORISMIC ACID FORMUL 1 CSO C3 H7 N O3 S FORMUL 3 MG 2(MG 2+) FORMUL 4 ISC 2(C10 H10 O6) FORMUL 7 HOH *140(H2 O) HELIX 1 AA1 SER A 51 GLN A 67 1 17 HELIX 2 AA2 SER A 98 ALA A 106 1 9 HELIX 3 AA3 GLU A 125 ALA A 141 1 17 HELIX 4 AA4 ASP A 163 ASN A 175 1 13 HELIX 5 AA5 ASP A 221 ALA A 234 1 14 HELIX 6 AA6 SER A 235 GLU A 255 1 21 HELIX 7 AA7 ASN A 290 HIS A 299 1 10 HELIX 8 AA8 PRO A 308 GLU A 320 1 13 HELIX 9 AA9 SER A 369 GLY A 389 1 21 HELIX 10 AB1 SER B 51 GLN B 67 1 17 HELIX 11 AB2 SER B 98 ALA B 106 1 9 HELIX 12 AB3 GLU B 125 ALA B 141 1 17 HELIX 13 AB4 ASP B 163 ASN B 175 1 13 HELIX 14 AB5 ASP B 221 SER B 235 1 15 HELIX 15 AB6 SER B 235 GLU B 255 1 21 HELIX 16 AB7 ASN B 290 HIS B 299 1 10 HELIX 17 AB8 PRO B 308 GLU B 320 1 13 HELIX 18 AB9 SER B 369 PHE B 388 1 20 SHEET 1 AA1 9 SER A 93 SER A 96 0 SHEET 2 AA1 9 PHE A 30 SER A 33 -1 N THR A 31 O GLN A 95 SHEET 3 AA1 9 PHE A 22 MET A 24 -1 N PHE A 23 O PHE A 30 SHEET 4 AA1 9 TYR A 179 PRO A 184 -1 O ASN A 180 N MET A 24 SHEET 5 AA1 9 VAL A 190 SER A 195 -1 O SER A 195 N TYR A 179 SHEET 6 AA1 9 CYS A 348 ARG A 352 -1 O LEU A 351 N VAL A 190 SHEET 7 AA1 9 GLN A 355 ILE A 364 -1 O GLN A 355 N ARG A 352 SHEET 8 AA1 9 LYS A 147 THR A 158 -1 N ILE A 156 O VAL A 356 SHEET 9 AA1 9 VAL A 117 ILE A 123 -1 N GLN A 121 O ASP A 155 SHEET 1 AA2 9 SER A 93 SER A 96 0 SHEET 2 AA2 9 PHE A 30 SER A 33 -1 N THR A 31 O GLN A 95 SHEET 3 AA2 9 PHE A 22 MET A 24 -1 N PHE A 23 O PHE A 30 SHEET 4 AA2 9 TYR A 179 PRO A 184 -1 O ASN A 180 N MET A 24 SHEET 5 AA2 9 VAL A 190 SER A 195 -1 O SER A 195 N TYR A 179 SHEET 6 AA2 9 CYS A 348 ARG A 352 -1 O LEU A 351 N VAL A 190 SHEET 7 AA2 9 GLN A 355 ILE A 364 -1 O GLN A 355 N ARG A 352 SHEET 8 AA2 9 LYS A 147 THR A 158 -1 N ILE A 156 O VAL A 356 SHEET 9 AA2 9 GLY A 306 PHE A 307 -1 O PHE A 307 N LYS A 147 SHEET 1 AA3 9 ALA A 37 PHE A 39 0 SHEET 2 AA3 9 SER A 87 ILE A 90 -1 O LEU A 88 N PHE A 39 SHEET 3 AA3 9 VAL A 73 ILE A 78 -1 N ALA A 77 O SER A 87 SHEET 4 AA3 9 ILE A 330 ASP A 335 -1 O CYS A 334 N MET A 74 SHEET 5 AA3 9 GLY A 340 VAL A 344 -1 O VAL A 343 N VAL A 331 SHEET 6 AA3 9 LEU A 198 ASP A 203 -1 N LEU A 200 O TRP A 342 SHEET 7 AA3 9 ARG A 206 ILE A 210 -1 O ARG A 206 N ASP A 203 SHEET 8 AA3 9 PHE A 281 ALA A 285 -1 O PHE A 281 N SER A 209 SHEET 9 AA3 9 SER A 257 HIS A 261 -1 N HIS A 261 O GLU A 282 SHEET 1 AA4 3 LEU A 212 ARG A 217 0 SHEET 2 AA4 3 LEU A 274 ALA A 278 -1 O TRP A 275 N ALA A 216 SHEET 3 AA4 3 GLN A 267 THR A 270 -1 N GLN A 267 O ALA A 278 SHEET 1 AA5 9 SER B 93 SER B 96 0 SHEET 2 AA5 9 PHE B 30 SER B 33 -1 N THR B 31 O GLN B 95 SHEET 3 AA5 9 PHE B 22 MET B 24 -1 N PHE B 23 O PHE B 30 SHEET 4 AA5 9 TYR B 179 PRO B 184 -1 O ASN B 180 N MET B 24 SHEET 5 AA5 9 VAL B 190 SER B 195 -1 O LEU B 191 N VAL B 183 SHEET 6 AA5 9 CYS B 348 ARG B 352 -1 O ALA B 349 N LEU B 192 SHEET 7 AA5 9 GLN B 355 ILE B 364 -1 O GLN B 355 N ARG B 352 SHEET 8 AA5 9 LYS B 147 THR B 158 -1 N VAL B 148 O ILE B 364 SHEET 9 AA5 9 VAL B 117 ILE B 123 -1 N ILE B 123 O LEU B 153 SHEET 1 AA6 9 SER B 93 SER B 96 0 SHEET 2 AA6 9 PHE B 30 SER B 33 -1 N THR B 31 O GLN B 95 SHEET 3 AA6 9 PHE B 22 MET B 24 -1 N PHE B 23 O PHE B 30 SHEET 4 AA6 9 TYR B 179 PRO B 184 -1 O ASN B 180 N MET B 24 SHEET 5 AA6 9 VAL B 190 SER B 195 -1 O LEU B 191 N VAL B 183 SHEET 6 AA6 9 CYS B 348 ARG B 352 -1 O ALA B 349 N LEU B 192 SHEET 7 AA6 9 GLN B 355 ILE B 364 -1 O GLN B 355 N ARG B 352 SHEET 8 AA6 9 LYS B 147 THR B 158 -1 N VAL B 148 O ILE B 364 SHEET 9 AA6 9 GLY B 306 PHE B 307 -1 O PHE B 307 N LYS B 147 SHEET 1 AA7 9 ALA B 37 PHE B 39 0 SHEET 2 AA7 9 SER B 87 ILE B 90 -1 O LEU B 88 N PHE B 39 SHEET 3 AA7 9 VAL B 73 ILE B 78 -1 N VAL B 75 O TYR B 89 SHEET 4 AA7 9 ILE B 330 ASP B 335 -1 O ILE B 330 N ILE B 78 SHEET 5 AA7 9 GLY B 340 VAL B 344 -1 O VAL B 343 N VAL B 331 SHEET 6 AA7 9 LEU B 198 ASP B 203 -1 N LYS B 202 O GLY B 340 SHEET 7 AA7 9 ARG B 206 SER B 209 -1 O SER B 208 N ARG B 201 SHEET 8 AA7 9 PHE B 281 ALA B 285 -1 O PHE B 281 N SER B 209 SHEET 9 AA7 9 SER B 257 HIS B 261 -1 N HIS B 261 O GLU B 282 SHEET 1 AA8 3 LEU B 212 ARG B 217 0 SHEET 2 AA8 3 LEU B 274 ALA B 278 -1 O TRP B 275 N ALA B 216 SHEET 3 AA8 3 GLN B 267 THR B 270 -1 N GLN B 267 O ALA B 278 LINK C GLY A 34 N CSO A 35 1555 1555 1.32 LINK C CSO A 35 N PHE A 36 1555 1555 1.33 LINK OE2 GLU A 241 MG MG A 401 1555 1555 2.07 LINK OE2 GLU A 376 MG MG A 401 1555 1555 2.07 LINK OE1 GLU B 241 MG MG B 401 1555 1555 2.95 LINK OE2 GLU B 241 MG MG B 401 1555 1555 1.99 LINK OE2 GLU B 376 MG MG B 401 1555 1555 2.19 LINK MG MG A 401 O HOH A 515 1555 1555 2.18 LINK MG MG A 401 O1 ISC A 402 1555 1555 2.17 LINK MG MG A 401 O2 ISC A 402 1555 1555 1.99 LINK MG MG A 401 O HOH A 522 1555 1555 1.99 LINK MG MG B 401 O1 ISC B 402 1555 1555 2.23 LINK MG MG B 401 O2 ISC B 402 1555 1555 2.31 LINK MG MG B 401 O HOH B 504 1555 1555 1.88 LINK MG MG B 401 O HOH B 507 1555 1555 2.00 CISPEP 1 ILE A 123 PRO A 124 0 -14.51 CISPEP 2 HIS A 299 PRO A 300 0 -4.95 CISPEP 3 PHE A 307 PRO A 308 0 -5.55 CISPEP 4 ILE B 123 PRO B 124 0 -5.94 CISPEP 5 HIS B 299 PRO B 300 0 -8.97 CISPEP 6 PHE B 307 PRO B 308 0 -9.05 SITE 1 AC1 5 GLU A 241 GLU A 376 ISC A 402 HOH A 515 SITE 2 AC1 5 HOH A 522 SITE 1 AC2 17 GLU A 197 LEU A 212 ALA A 213 GLY A 214 SITE 2 AC2 17 SER A 215 GLU A 241 ALA A 303 ILE A 346 SITE 3 AC2 17 ARG A 347 ALA A 360 GLY A 361 ALA A 362 SITE 4 AC2 17 GLY A 363 GLU A 376 LYS A 380 MG A 401 SITE 5 AC2 17 HOH A 536 SITE 1 AC3 5 GLU B 241 GLU B 376 ISC B 402 HOH B 504 SITE 2 AC3 5 HOH B 507 SITE 1 AC4 18 GLU B 197 GLY B 214 SER B 215 GLU B 241 SITE 2 AC4 18 HIS B 276 ALA B 303 LEU B 304 ILE B 346 SITE 3 AC4 18 ARG B 347 ALA B 360 GLY B 361 ALA B 362 SITE 4 AC4 18 GLY B 363 GLU B 376 LYS B 380 MG B 401 SITE 5 AC4 18 HOH B 503 HOH B 507 CRYST1 80.907 80.907 265.231 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012360 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012360 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003770 0.00000 MASTER 404 0 5 18 60 0 14 6 0 0 0 62 END