HEADER OXIDOREDUCTASE/OXIDOREDUCTASE INHIBITOR 28-APR-16 5JM5 TITLE CRYSTAL STRUCTURE OF AKR1C3 COMPLEXED WITH A PRO-DRUG COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 17-BETA-HYDROXYSTEROID DEHYDROGENASE TYPE 5,17-BETA-HSD 5,3- COMPND 5 ALPHA-HSD TYPE II,BRAIN,3-ALPHA-HYDROXYSTEROID DEHYDROGENASE TYPE 2, COMPND 6 3-ALPHA-HSD TYPE 2,CHLORDECONE REDUCTASE HOMOLOG HAKRB,DIHYDRODIOL COMPND 7 DEHYDROGENASE 3,DD3,DIHYDRODIOL DEHYDROGENASE TYPE I,HA1753,INDANOL COMPND 8 DEHYDROGENASE,PROSTAGLANDIN F SYNTHASE,PGFS,TESTOSTERONE 17-BETA- COMPND 9 DEHYDROGENASE 5,TRANS-1,2-DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE; COMPND 10 EC: 1.-.-.-,1.1.1.357,1.1.1.112,1.1.1.188,1.1.1.239,1.1.1.64, COMPND 11 1.3.1.20; COMPND 12 ENGINEERED: YES; COMPND 13 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C3, DDH1, HSD17B5, KIAA0119, PGFS; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PRO-DRUG, INHIBITOR, LIVER CANCER, AKR1C3, OXIDOREDUCTASE- KEYWDS 2 OXIDOREDUCTASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR C.WANG,C.WANG,Q.LI,Z.WANG,W.XIE REVDAT 1 03-MAY-17 5JM5 0 JRNL AUTH P.HE,C.WANG,C.ZHOU,Y.WANG,C.WANG,G.QU,H.LI,D.CAO,J.LI, JRNL AUTH 2 R.KONNBERG,W.XIE,Q.LI,Z.WANG JRNL TITL AN AKR1C3 BASED PRO-DRUG TH3424 HAS POTENT ANTI-TUMOR JRNL TITL 2 ACTIVITY AGAINST LIVER CANCER JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.32 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 50059 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.245 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 2541 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 25.3251 - 5.2125 0.98 2669 147 0.1531 0.1708 REMARK 3 2 5.2125 - 4.1432 0.99 2648 152 0.1324 0.1679 REMARK 3 3 4.1432 - 3.6211 1.00 2675 140 0.1633 0.2082 REMARK 3 4 3.6211 - 3.2908 1.00 2669 137 0.1739 0.2147 REMARK 3 5 3.2908 - 3.0554 1.00 2683 134 0.1857 0.2254 REMARK 3 6 3.0554 - 2.8755 1.00 2656 151 0.1903 0.2621 REMARK 3 7 2.8755 - 2.7317 1.00 2658 139 0.1940 0.2585 REMARK 3 8 2.7317 - 2.6129 1.00 2676 147 0.1964 0.2373 REMARK 3 9 2.6129 - 2.5124 1.00 2642 154 0.2004 0.2830 REMARK 3 10 2.5124 - 2.4258 1.00 2661 139 0.2039 0.2564 REMARK 3 11 2.4258 - 2.3500 1.00 2663 139 0.2078 0.2521 REMARK 3 12 2.3500 - 2.2828 1.00 2710 123 0.2302 0.2559 REMARK 3 13 2.2828 - 2.2228 0.96 2536 120 0.3666 0.5119 REMARK 3 14 2.2228 - 2.1686 0.98 2606 137 0.2648 0.3475 REMARK 3 15 2.1686 - 2.1193 1.00 2651 150 0.2248 0.3102 REMARK 3 16 2.1193 - 2.0742 1.00 2640 147 0.2212 0.2835 REMARK 3 17 2.0742 - 2.0328 1.00 2619 150 0.2635 0.3046 REMARK 3 18 2.0328 - 1.9944 0.90 2456 135 0.2414 0.3146 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.270 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.390 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 5349 REMARK 3 ANGLE : 1.208 7279 REMARK 3 CHIRALITY : 0.046 783 REMARK 3 PLANARITY : 0.005 920 REMARK 3 DIHEDRAL : 14.621 2000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 11-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000219331. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-15 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : CU FINE FOCUS REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : OXFORD ONYX CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSALISPRO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 50262 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 25.323 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.800 REMARK 200 R MERGE (I) : 0.12900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.2 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.51700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3UWE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MES PH 6.0, 0.14M NACL, 20% REMARK 280 PEG8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.21150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASP A 2 REMARK 465 SER A 3 REMARK 465 GLU A 322 REMARK 465 TYR A 323 REMARK 465 TYR A 324 REMARK 465 LEU A 325 REMARK 465 GLU A 326 REMARK 465 HIS A 327 REMARK 465 HIS A 328 REMARK 465 HIS A 329 REMARK 465 HIS A 330 REMARK 465 HIS A 331 REMARK 465 HIS A 332 REMARK 465 MET B 1 REMARK 465 ASP B 2 REMARK 465 SER B 3 REMARK 465 ASP B 132 REMARK 465 GLU B 133 REMARK 465 ASN B 134 REMARK 465 GLY B 135 REMARK 465 SER B 320 REMARK 465 ASP B 321 REMARK 465 GLU B 322 REMARK 465 TYR B 323 REMARK 465 TYR B 324 REMARK 465 LEU B 325 REMARK 465 GLU B 326 REMARK 465 HIS B 327 REMARK 465 HIS B 328 REMARK 465 HIS B 329 REMARK 465 HIS B 330 REMARK 465 HIS B 331 REMARK 465 HIS B 332 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 4 CG CD CE NZ REMARK 470 LYS A 104 CG CD CE NZ REMARK 470 GLU A 126 CG CD OE1 OE2 REMARK 470 GLU A 127 CG CD OE1 OE2 REMARK 470 GLU A 133 CG CD OE1 OE2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 294 CG CD CE NZ REMARK 470 ASP A 321 CG OD1 OD2 REMARK 470 GLU B 127 CG CD OE1 OE2 REMARK 470 VAL B 137 CG1 CG2 REMARK 470 ILE B 138 CG1 CG2 CD1 REMARK 470 LYS B 225 CG CD CE NZ REMARK 470 LYS B 249 CG CD CE NZ REMARK 470 PHE B 306 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 308 OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 586 O HOH A 685 2.04 REMARK 500 O HOH B 703 O HOH B 704 2.15 REMARK 500 O HOH B 649 O HOH B 691 2.15 REMARK 500 O HOH B 680 O HOH B 731 2.16 REMARK 500 O HOH B 644 O HOH B 673 2.18 REMARK 500 O HOH B 595 O HOH B 693 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 732 O HOH B 686 2646 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 CYS A 193 119.96 -165.65 REMARK 500 PHE A 197 74.50 -160.39 REMARK 500 SER A 221 168.83 74.96 REMARK 500 ARG A 250 -151.49 -122.92 REMARK 500 SER A 308 113.10 -160.21 REMARK 500 SER A 320 7.61 -57.52 REMARK 500 PHE B 197 71.42 -165.35 REMARK 500 SER B 221 167.81 67.18 REMARK 500 ARG B 250 -147.80 -122.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS B 4 GLN B 5 -145.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 775 DISTANCE = 5.86 ANGSTROMS REMARK 525 HOH A 776 DISTANCE = 6.15 ANGSTROMS REMARK 525 HOH A 777 DISTANCE = 7.26 ANGSTROMS REMARK 525 HOH B 755 DISTANCE = 6.64 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LG A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6NY A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LG B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue 6LG B 403 DBREF 5JM5 A 1 323 UNP P42330 AK1C3_HUMAN 1 323 DBREF 5JM5 B 1 323 UNP P42330 AK1C3_HUMAN 1 323 SEQADV 5JM5 GLN A 5 UNP P42330 HIS 5 ENGINEERED MUTATION SEQADV 5JM5 TYR A 324 UNP P42330 EXPRESSION TAG SEQADV 5JM5 LEU A 325 UNP P42330 EXPRESSION TAG SEQADV 5JM5 GLU A 326 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS A 327 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS A 328 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS A 329 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS A 330 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS A 331 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS A 332 UNP P42330 EXPRESSION TAG SEQADV 5JM5 GLN B 5 UNP P42330 HIS 5 ENGINEERED MUTATION SEQADV 5JM5 TYR B 324 UNP P42330 EXPRESSION TAG SEQADV 5JM5 LEU B 325 UNP P42330 EXPRESSION TAG SEQADV 5JM5 GLU B 326 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS B 327 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS B 328 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS B 329 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS B 330 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS B 331 UNP P42330 EXPRESSION TAG SEQADV 5JM5 HIS B 332 UNP P42330 EXPRESSION TAG SEQRES 1 A 332 MET ASP SER LYS GLN GLN CYS VAL LYS LEU ASN ASP GLY SEQRES 2 A 332 HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR ALA PRO SEQRES 3 A 332 PRO GLU VAL PRO ARG SER LYS ALA LEU GLU VAL THR LYS SEQRES 4 A 332 LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE ASP SER ALA SEQRES 5 A 332 HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU ALA ILE SEQRES 6 A 332 ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG GLU ASP SEQRES 7 A 332 ILE PHE TYR THR SER LYS LEU TRP SER THR PHE HIS ARG SEQRES 8 A 332 PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SER LEU LYS SEQRES 9 A 332 LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR LEU ILE HIS SEQRES 10 A 332 SER PRO MET SER LEU LYS PRO GLY GLU GLU LEU SER PRO SEQRES 11 A 332 THR ASP GLU ASN GLY LYS VAL ILE PHE ASP ILE VAL ASP SEQRES 12 A 332 LEU CYS THR THR TRP GLU ALA MET GLU LYS CYS LYS ASP SEQRES 13 A 332 ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN PHE ASN SEQRES 14 A 332 ARG ARG GLN LEU GLU MET ILE LEU ASN LYS PRO GLY LEU SEQRES 15 A 332 LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS HIS PRO SEQRES 16 A 332 TYR PHE ASN ARG SER LYS LEU LEU ASP PHE CYS LYS SER SEQRES 17 A 332 LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU GLY SER SEQRES 18 A 332 GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SER PRO VAL SEQRES 19 A 332 LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA LYS LYS SEQRES 20 A 332 HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG TYR GLN SEQRES 21 A 332 LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER TYR ASN SEQRES 22 A 332 GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE GLU PHE SEQRES 23 A 332 GLN LEU THR ALA GLU ASP MET LYS ALA ILE ASP GLY LEU SEQRES 24 A 332 ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SER PHE ALA SEQRES 25 A 332 SER HIS PRO ASN TYR PRO TYR SER ASP GLU TYR TYR LEU SEQRES 26 A 332 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 332 MET ASP SER LYS GLN GLN CYS VAL LYS LEU ASN ASP GLY SEQRES 2 B 332 HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR ALA PRO SEQRES 3 B 332 PRO GLU VAL PRO ARG SER LYS ALA LEU GLU VAL THR LYS SEQRES 4 B 332 LEU ALA ILE GLU ALA GLY PHE ARG HIS ILE ASP SER ALA SEQRES 5 B 332 HIS LEU TYR ASN ASN GLU GLU GLN VAL GLY LEU ALA ILE SEQRES 6 B 332 ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG GLU ASP SEQRES 7 B 332 ILE PHE TYR THR SER LYS LEU TRP SER THR PHE HIS ARG SEQRES 8 B 332 PRO GLU LEU VAL ARG PRO ALA LEU GLU ASN SER LEU LYS SEQRES 9 B 332 LYS ALA GLN LEU ASP TYR VAL ASP LEU TYR LEU ILE HIS SEQRES 10 B 332 SER PRO MET SER LEU LYS PRO GLY GLU GLU LEU SER PRO SEQRES 11 B 332 THR ASP GLU ASN GLY LYS VAL ILE PHE ASP ILE VAL ASP SEQRES 12 B 332 LEU CYS THR THR TRP GLU ALA MET GLU LYS CYS LYS ASP SEQRES 13 B 332 ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN PHE ASN SEQRES 14 B 332 ARG ARG GLN LEU GLU MET ILE LEU ASN LYS PRO GLY LEU SEQRES 15 B 332 LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS HIS PRO SEQRES 16 B 332 TYR PHE ASN ARG SER LYS LEU LEU ASP PHE CYS LYS SER SEQRES 17 B 332 LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU GLY SER SEQRES 18 B 332 GLN ARG ASP LYS ARG TRP VAL ASP PRO ASN SER PRO VAL SEQRES 19 B 332 LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA LYS LYS SEQRES 20 B 332 HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG TYR GLN SEQRES 21 B 332 LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER TYR ASN SEQRES 22 B 332 GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE GLU PHE SEQRES 23 B 332 GLN LEU THR ALA GLU ASP MET LYS ALA ILE ASP GLY LEU SEQRES 24 B 332 ASP ARG ASN LEU HIS TYR PHE ASN SER ASP SER PHE ALA SEQRES 25 B 332 SER HIS PRO ASN TYR PRO TYR SER ASP GLU TYR TYR LEU SEQRES 26 B 332 GLU HIS HIS HIS HIS HIS HIS HET NAP A 401 48 HET 6LG A 402 32 HET 6NY A 403 23 HET NAP B 401 48 HET 6LG B 402 32 HET 6LG B 403 32 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM 6LG (1R)-1-{3-[3-(DIMETHYLCARBAMOYL)PHENOXY]-4- HETNAM 2 6LG NITROPHENYL}ETHYL BIS[(AZIRIDIN-1-YL)]PHOSPHINATE HETNAM 6NY 3-{2-(HYDROXYAMINO)-5-[(1S)-1-HYDROXYETHYL]PHENOXY}-N, HETNAM 2 6NY N-DIMETHYLBENZAMIDE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 6LG 3(C21 H25 N4 O6 P) FORMUL 5 6NY C17 H20 N2 O4 FORMUL 9 HOH *532(H2 O) HELIX 1 AA1 ARG A 31 GLY A 45 1 15 HELIX 2 AA2 ALA A 52 ASN A 56 5 5 HELIX 3 AA3 ASN A 57 ASP A 71 1 15 HELIX 4 AA4 LYS A 75 ILE A 79 5 5 HELIX 5 AA5 TRP A 86 HIS A 90 5 5 HELIX 6 AA6 ARG A 91 GLN A 107 1 17 HELIX 7 AA7 ASP A 143 ALA A 157 1 15 HELIX 8 AA8 ASN A 169 ASN A 178 1 10 HELIX 9 AA9 ARG A 199 LYS A 209 1 11 HELIX 10 AB1 VAL A 234 GLU A 237 5 4 HELIX 11 AB2 ASP A 238 HIS A 248 1 11 HELIX 12 AB3 THR A 251 ARG A 263 1 13 HELIX 13 AB4 ASN A 273 VAL A 281 1 9 HELIX 14 AB5 GLN A 282 PHE A 286 5 5 HELIX 15 AB6 THR A 289 GLY A 298 1 10 HELIX 16 AB7 SER A 308 SER A 313 1 6 HELIX 17 AB8 ARG B 31 GLY B 45 1 15 HELIX 18 AB9 ALA B 52 ASN B 56 5 5 HELIX 19 AC1 ASN B 57 ASP B 71 1 15 HELIX 20 AC2 LYS B 75 ILE B 79 5 5 HELIX 21 AC3 TRP B 86 HIS B 90 5 5 HELIX 22 AC4 ARG B 91 GLU B 93 5 3 HELIX 23 AC5 LEU B 94 GLN B 107 1 14 HELIX 24 AC6 ASP B 143 ALA B 157 1 15 HELIX 25 AC7 ASN B 169 ASN B 178 1 10 HELIX 26 AC8 ARG B 199 LYS B 209 1 11 HELIX 27 AC9 VAL B 234 GLU B 237 5 4 HELIX 28 AD1 ASP B 238 LYS B 249 1 12 HELIX 29 AD2 THR B 251 ARG B 263 1 13 HELIX 30 AD3 ASN B 273 VAL B 281 1 9 HELIX 31 AD4 GLN B 282 PHE B 286 5 5 HELIX 32 AD5 THR B 289 GLY B 298 1 10 SHEET 1 AA1 2 CYS A 7 LYS A 9 0 SHEET 2 AA1 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 AA2 9 LEU A 19 GLY A 22 0 SHEET 2 AA2 9 HIS A 48 ASP A 50 1 O HIS A 48 N PHE A 21 SHEET 3 AA2 9 PHE A 80 LEU A 85 1 O PHE A 80 N ILE A 49 SHEET 4 AA2 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 AA2 9 ALA A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 AA2 9 CYS A 188 GLU A 192 1 O CYS A 188 N VAL A 165 SHEET 7 AA2 9 VAL A 212 TYR A 216 1 O VAL A 212 N ASN A 189 SHEET 8 AA2 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 AA2 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 SHEET 1 AA3 2 CYS B 7 LYS B 9 0 SHEET 2 AA3 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 AA4 9 LEU B 19 GLY B 22 0 SHEET 2 AA4 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 AA4 9 PHE B 80 LEU B 85 1 O PHE B 80 N ILE B 49 SHEET 4 AA4 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 AA4 9 ALA B 160 SER B 166 1 O GLY B 164 N TYR B 114 SHEET 6 AA4 9 CYS B 188 GLU B 192 1 O CYS B 188 N VAL B 165 SHEET 7 AA4 9 VAL B 212 TYR B 216 1 O TYR B 216 N VAL B 191 SHEET 8 AA4 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 AA4 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 SITE 1 AC1 33 GLY A 22 THR A 23 TYR A 24 ASP A 50 SITE 2 AC1 33 TYR A 55 HIS A 117 SER A 166 ASN A 167 SITE 3 AC1 33 GLN A 190 TYR A 216 SER A 217 ALA A 218 SITE 4 AC1 33 LEU A 219 GLY A 220 SER A 221 GLN A 222 SITE 5 AC1 33 ALA A 253 LEU A 268 ALA A 269 LYS A 270 SITE 6 AC1 33 SER A 271 TYR A 272 ARG A 276 GLN A 279 SITE 7 AC1 33 ASN A 280 6LG A 402 HOH A 536 HOH A 552 SITE 8 AC1 33 HOH A 585 HOH A 598 HOH A 613 HOH A 668 SITE 9 AC1 33 HOH A 696 SITE 1 AC2 15 TYR A 24 TYR A 55 TRP A 86 HIS A 117 SITE 2 AC2 15 SER A 118 MET A 120 SER A 129 ASN A 167 SITE 3 AC2 15 TYR A 216 TRP A 227 PHE A 306 PHE A 311 SITE 4 AC2 15 PRO A 318 NAP A 401 HOH A 630 SITE 1 AC3 10 GLN A 6 CYS A 7 VAL A 18 ARG A 258 SITE 2 AC3 10 LEU A 261 GLN A 262 GLY A 264 VAL A 265 SITE 3 AC3 10 PHE A 284 HOH A 702 SITE 1 AC4 30 GLY B 22 THR B 23 TYR B 24 ASP B 50 SITE 2 AC4 30 TYR B 55 HIS B 117 SER B 166 ASN B 167 SITE 3 AC4 30 GLN B 190 TYR B 216 SER B 217 ALA B 218 SITE 4 AC4 30 LEU B 219 SER B 221 GLN B 222 ALA B 253 SITE 5 AC4 30 LEU B 268 ALA B 269 LYS B 270 SER B 271 SITE 6 AC4 30 TYR B 272 ARG B 276 GLN B 279 ASN B 280 SITE 7 AC4 30 6LG B 402 HOH B 556 HOH B 577 HOH B 608 SITE 8 AC4 30 HOH B 626 HOH B 636 SITE 1 AC5 13 TYR B 24 TYR B 55 TRP B 86 HIS B 117 SITE 2 AC5 13 SER B 118 MET B 120 SER B 129 ASN B 167 SITE 3 AC5 13 ARG B 226 TRP B 227 PHE B 311 PRO B 318 SITE 4 AC5 13 NAP B 401 SITE 1 AC6 13 GLN B 6 CYS B 7 VAL B 8 VAL B 18 SITE 2 AC6 13 ARG B 258 LEU B 261 GLN B 262 GLY B 264 SITE 3 AC6 13 VAL B 265 PHE B 284 HOH B 528 HOH B 639 SITE 4 AC6 13 HOH B 675 CRYST1 48.771 106.423 74.944 90.00 103.60 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020504 0.000000 0.004959 0.00000 SCALE2 0.000000 0.009396 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013728 0.00000 MASTER 376 0 6 32 22 0 32 6 0 0 0 52 END