HEADER TRANSCRIPTION REGULATOR/DNA 27-APR-16 5JLX TITLE ANTPHD WITH 15BP DNA DUPLEX S-MONOTHIOATED AT CYTIDINE-8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOTIC PROTEIN ANTENNAPEDIA; COMPND 3 CHAIN: A, D; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: DNA (5'-D(*AP*GP*AP*AP*AP*GP*CP*(C7S) COMPND 8 P*AP*TP*TP*AP*GP*AP*G)-3'); COMPND 9 CHAIN: B, E; COMPND 10 ENGINEERED: YES; COMPND 11 MOL_ID: 3; COMPND 12 MOLECULE: DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)- COMPND 13 3'); COMPND 14 CHAIN: C, F; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; SOURCE 3 ORGANISM_COMMON: FRUIT FLY; SOURCE 4 ORGANISM_TAXID: 7227; SOURCE 5 GENE: ANTP, CG1028; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 11 ORGANISM_TAXID: 32644; SOURCE 12 MOL_ID: 3; SOURCE 13 SYNTHETIC: YES; SOURCE 14 ORGANISM_SCIENTIFIC: UNIDENTIFIED; SOURCE 15 ORGANISM_TAXID: 32644 KEYWDS HOMEODOMAIN, DNA-BINDING PROTEIN, COMPLEX (HOMEODOMAIN-DNA), KEYWDS 2 TRANSCRIPTION-DNA COMPLEX, TRANSCRIPTION REGULATOR-DNA COMPLEX, KEYWDS 3 MONOTHIOLATED DNA EXPDTA X-RAY DIFFRACTION AUTHOR M.A.WHITE,L.ZANDARASHVILI,J.IWAHARA,D.NGUYEN REVDAT 5 25-DEC-19 5JLX 1 DBREF REVDAT 4 20-SEP-17 5JLX 1 REMARK REVDAT 3 14-SEP-16 5JLX 1 JRNL REVDAT 2 13-JUL-16 5JLX 1 TITLE REVDAT 1 22-JUN-16 5JLX 0 JRNL AUTH D.NGUYEN,L.ZANDARASHVILI,M.A.WHITE,J.IWAHARA JRNL TITL STEREOSPECIFIC EFFECTS OF OXYGEN-TO-SULFUR SUBSTITUTION IN JRNL TITL 2 DNA PHOSPHATE ON ION PAIR DYNAMICS AND PROTEIN-DNA AFFINITY. JRNL REF CHEMBIOCHEM V. 17 1636 2016 JRNL REFN ESSN 1439-7633 JRNL PMID 27271797 JRNL DOI 10.1002/CBIC.201600265 REMARK 2 REMARK 2 RESOLUTION. 2.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.10_2155 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 78.7 REMARK 3 NUMBER OF REFLECTIONS : 9098 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 455 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.6696 - 3.9622 0.99 3733 197 0.1785 0.2206 REMARK 3 2 3.9622 - 3.1455 0.82 2950 155 0.1959 0.2570 REMARK 3 3 3.1455 - 2.7480 0.55 1960 103 0.2753 0.3788 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.370 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 27.280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2434 REMARK 3 ANGLE : 0.786 3526 REMARK 3 CHIRALITY : 0.042 377 REMARK 3 PLANARITY : 0.004 241 REMARK 3 DIHEDRAL : 26.539 1236 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 33 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 1:13) REMARK 3 ORIGIN FOR THE GROUP (A): 24.4948 14.2377 1.7546 REMARK 3 T TENSOR REMARK 3 T11: 0.3417 T22: 0.4890 REMARK 3 T33: 0.3239 T12: 0.1361 REMARK 3 T13: 0.0326 T23: -0.1487 REMARK 3 L TENSOR REMARK 3 L11: 0.0793 L22: 0.2455 REMARK 3 L33: 0.1054 L12: 0.1070 REMARK 3 L13: 0.0156 L23: -0.0679 REMARK 3 S TENSOR REMARK 3 S11: -0.2524 S12: -0.2647 S13: -0.1306 REMARK 3 S21: -0.0528 S22: -0.0616 S23: -0.4342 REMARK 3 S31: 0.2151 S32: -0.0169 S33: -0.0771 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 14:17) REMARK 3 ORIGIN FOR THE GROUP (A): 17.1839 14.4656 7.5946 REMARK 3 T TENSOR REMARK 3 T11: 0.4905 T22: 0.4266 REMARK 3 T33: 0.3101 T12: 0.2273 REMARK 3 T13: -0.0478 T23: -0.0400 REMARK 3 L TENSOR REMARK 3 L11: 0.0348 L22: 0.0424 REMARK 3 L33: 0.0022 L12: 0.0373 REMARK 3 L13: -0.0010 L23: -0.0100 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.0217 S13: -0.1376 REMARK 3 S21: 0.0026 S22: 0.1135 S23: -0.0230 REMARK 3 S31: -0.0075 S32: -0.1128 S33: 0.0133 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 18:23) REMARK 3 ORIGIN FOR THE GROUP (A): 9.4784 14.8043 8.1004 REMARK 3 T TENSOR REMARK 3 T11: -0.2295 T22: 0.0489 REMARK 3 T33: -0.7503 T12: 0.5156 REMARK 3 T13: -0.7353 T23: 0.5270 REMARK 3 L TENSOR REMARK 3 L11: 0.1171 L22: 0.0097 REMARK 3 L33: 0.3549 L12: 0.0212 REMARK 3 L13: 0.0717 L23: 0.0802 REMARK 3 S TENSOR REMARK 3 S11: -0.0739 S12: -0.0416 S13: 0.0048 REMARK 3 S21: -0.1105 S22: 0.0433 S23: 0.2185 REMARK 3 S31: 0.2001 S32: 0.0820 S33: -0.1499 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN A AND RESID 24:28) REMARK 3 ORIGIN FOR THE GROUP (A): 5.7041 20.9937 2.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.7620 T22: 0.6677 REMARK 3 T33: 0.7980 T12: 0.2024 REMARK 3 T13: -0.2907 T23: -0.1549 REMARK 3 L TENSOR REMARK 3 L11: 0.0242 L22: 0.0160 REMARK 3 L33: 0.0123 L12: -0.0147 REMARK 3 L13: -0.0102 L23: 0.0059 REMARK 3 S TENSOR REMARK 3 S11: -0.0580 S12: 0.0844 S13: 0.1002 REMARK 3 S21: 0.2989 S22: -0.0775 S23: -0.0450 REMARK 3 S31: 0.3282 S32: -0.1658 S33: -0.0001 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN A AND RESID 29:33) REMARK 3 ORIGIN FOR THE GROUP (A): 12.3490 29.4020 4.3797 REMARK 3 T TENSOR REMARK 3 T11: 0.3459 T22: 0.6623 REMARK 3 T33: 0.4425 T12: 0.0777 REMARK 3 T13: -0.0548 T23: -0.1112 REMARK 3 L TENSOR REMARK 3 L11: 0.0483 L22: 0.0111 REMARK 3 L33: 0.0583 L12: 0.0249 REMARK 3 L13: -0.0503 L23: -0.0323 REMARK 3 S TENSOR REMARK 3 S11: -0.5358 S12: -0.1331 S13: -0.0480 REMARK 3 S21: -0.4036 S22: -0.4028 S23: 0.2530 REMARK 3 S31: -0.2264 S32: -0.1055 S33: -0.0025 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN A AND RESID 34:38) REMARK 3 ORIGIN FOR THE GROUP (A): 18.6958 26.1925 7.6725 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.5201 REMARK 3 T33: 0.5025 T12: -0.0000 REMARK 3 T13: 0.0133 T23: -0.0594 REMARK 3 L TENSOR REMARK 3 L11: 0.0309 L22: 0.0200 REMARK 3 L33: 0.0140 L12: 0.0086 REMARK 3 L13: 0.0202 L23: -0.0069 REMARK 3 S TENSOR REMARK 3 S11: 0.1273 S12: -0.2344 S13: -0.0206 REMARK 3 S21: 0.0245 S22: 0.0550 S23: -0.0291 REMARK 3 S31: -0.0167 S32: 0.0728 S33: -0.0012 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: (CHAIN A AND RESID 39:44) REMARK 3 ORIGIN FOR THE GROUP (A): 20.5436 24.4027 0.0930 REMARK 3 T TENSOR REMARK 3 T11: 0.5198 T22: 0.4830 REMARK 3 T33: 0.2870 T12: 0.1016 REMARK 3 T13: -0.0806 T23: 0.1069 REMARK 3 L TENSOR REMARK 3 L11: 0.1071 L22: 0.1297 REMARK 3 L33: 0.0055 L12: 0.1141 REMARK 3 L13: -0.0177 L23: -0.0145 REMARK 3 S TENSOR REMARK 3 S11: -0.2195 S12: 0.1762 S13: -0.1198 REMARK 3 S21: -0.1736 S22: -0.0637 S23: -0.1885 REMARK 3 S31: -0.2668 S32: -0.0204 S33: -0.0403 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: (CHAIN A AND RESID 45:52) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4053 19.0640 -2.9278 REMARK 3 T TENSOR REMARK 3 T11: 0.2296 T22: 0.3854 REMARK 3 T33: 0.4164 T12: 0.0268 REMARK 3 T13: -0.0410 T23: 0.0205 REMARK 3 L TENSOR REMARK 3 L11: 0.0071 L22: -0.0006 REMARK 3 L33: 0.0112 L12: 0.0038 REMARK 3 L13: -0.0216 L23: 0.0004 REMARK 3 S TENSOR REMARK 3 S11: -0.1916 S12: 0.3962 S13: 0.1119 REMARK 3 S21: -0.3588 S22: -0.2461 S23: 0.1467 REMARK 3 S31: 0.2752 S32: -0.1343 S33: 0.0004 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: (CHAIN A AND RESID 53:56) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9371 12.4765 -3.3529 REMARK 3 T TENSOR REMARK 3 T11: 0.5179 T22: 0.5536 REMARK 3 T33: 0.7258 T12: -0.0083 REMARK 3 T13: -0.2878 T23: -0.2131 REMARK 3 L TENSOR REMARK 3 L11: 0.1143 L22: 0.0095 REMARK 3 L33: 0.0051 L12: -0.0102 REMARK 3 L13: -0.0313 L23: -0.0038 REMARK 3 S TENSOR REMARK 3 S11: -0.0259 S12: 0.0753 S13: 0.0947 REMARK 3 S21: -0.1101 S22: 0.0650 S23: 0.1420 REMARK 3 S31: 0.1629 S32: -0.2139 S33: 0.1515 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: (CHAIN A AND RESID 57:61) REMARK 3 ORIGIN FOR THE GROUP (A): 3.7842 7.6896 -3.0351 REMARK 3 T TENSOR REMARK 3 T11: 1.3610 T22: 0.6906 REMARK 3 T33: 1.0038 T12: -0.1807 REMARK 3 T13: -0.0134 T23: -0.0836 REMARK 3 L TENSOR REMARK 3 L11: 0.0102 L22: 0.0066 REMARK 3 L33: 0.0074 L12: -0.0027 REMARK 3 L13: 0.0078 L23: 0.0028 REMARK 3 S TENSOR REMARK 3 S11: -0.2307 S12: 0.0159 S13: 0.0089 REMARK 3 S21: 0.0812 S22: 0.0342 S23: 0.0891 REMARK 3 S31: 0.0909 S32: -0.0247 S33: 0.0005 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: (CHAIN B AND RESID 1:5) REMARK 3 ORIGIN FOR THE GROUP (A): 6.4683 34.6891 -11.4677 REMARK 3 T TENSOR REMARK 3 T11: 0.8299 T22: 0.6010 REMARK 3 T33: 0.7696 T12: 0.2800 REMARK 3 T13: -0.1045 T23: 0.2331 REMARK 3 L TENSOR REMARK 3 L11: 0.0049 L22: 0.3152 REMARK 3 L33: 0.3079 L12: 0.0235 REMARK 3 L13: 0.0048 L23: -0.3184 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.1373 S13: 0.1834 REMARK 3 S21: 0.0166 S22: -0.2479 S23: -0.1137 REMARK 3 S31: -0.1044 S32: 0.2144 S33: -0.1170 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: (CHAIN B AND RESID 6:11) REMARK 3 ORIGIN FOR THE GROUP (A): 10.2022 15.5232 -13.7931 REMARK 3 T TENSOR REMARK 3 T11: 0.8249 T22: 0.7146 REMARK 3 T33: 0.6598 T12: 0.2632 REMARK 3 T13: -0.2900 T23: -0.1203 REMARK 3 L TENSOR REMARK 3 L11: 0.5672 L22: 0.8210 REMARK 3 L33: 0.5332 L12: 0.3722 REMARK 3 L13: -0.5381 L23: -0.1274 REMARK 3 S TENSOR REMARK 3 S11: 0.7934 S12: 0.5063 S13: -0.7285 REMARK 3 S21: 0.0129 S22: -0.3128 S23: 0.2813 REMARK 3 S31: 0.1217 S32: -0.1896 S33: 0.0791 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: (CHAIN B AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 27.2394 8.6331 -10.0784 REMARK 3 T TENSOR REMARK 3 T11: 0.7025 T22: 0.7169 REMARK 3 T33: 0.5803 T12: 0.1824 REMARK 3 T13: -0.1107 T23: 0.0296 REMARK 3 L TENSOR REMARK 3 L11: 0.0089 L22: 0.0214 REMARK 3 L33: 0.0054 L12: 0.0003 REMARK 3 L13: 0.0093 L23: -0.0033 REMARK 3 S TENSOR REMARK 3 S11: 0.1316 S12: 0.6109 S13: -0.4756 REMARK 3 S21: -0.1140 S22: -0.0589 S23: 0.2009 REMARK 3 S31: -0.1483 S32: 0.1414 S33: 0.0005 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: (CHAIN C AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 21.5851 5.7992 -8.6998 REMARK 3 T TENSOR REMARK 3 T11: 0.7536 T22: 0.4579 REMARK 3 T33: 0.5086 T12: 0.1452 REMARK 3 T13: -0.1826 T23: -0.1095 REMARK 3 L TENSOR REMARK 3 L11: 0.6457 L22: 0.6195 REMARK 3 L33: 0.2325 L12: -0.2842 REMARK 3 L13: -0.4040 L23: 0.2962 REMARK 3 S TENSOR REMARK 3 S11: 0.1071 S12: 0.5710 S13: -0.4445 REMARK 3 S21: 0.5922 S22: -0.3941 S23: -0.3873 REMARK 3 S31: -0.1511 S32: -0.7960 S33: -0.0406 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: (CHAIN C AND RESID 8:11) REMARK 3 ORIGIN FOR THE GROUP (A): 13.7452 21.4198 -17.6801 REMARK 3 T TENSOR REMARK 3 T11: 1.0585 T22: 1.0964 REMARK 3 T33: 0.7949 T12: 0.5720 REMARK 3 T13: -0.1820 T23: 0.1036 REMARK 3 L TENSOR REMARK 3 L11: 0.0075 L22: 0.1725 REMARK 3 L33: 0.0646 L12: -0.0277 REMARK 3 L13: 0.0123 L23: -0.1097 REMARK 3 S TENSOR REMARK 3 S11: -0.0203 S12: 0.6703 S13: 0.2777 REMARK 3 S21: 0.1362 S22: -0.1357 S23: 0.0089 REMARK 3 S31: -0.4098 S32: 0.0712 S33: 0.0053 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: (CHAIN C AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7971 27.7351 -11.6482 REMARK 3 T TENSOR REMARK 3 T11: 1.1111 T22: 0.5441 REMARK 3 T33: 0.7126 T12: 0.1329 REMARK 3 T13: -0.0855 T23: -0.1132 REMARK 3 L TENSOR REMARK 3 L11: 0.0316 L22: 0.0342 REMARK 3 L33: 0.0136 L12: 0.0377 REMARK 3 L13: -0.0108 L23: -0.0140 REMARK 3 S TENSOR REMARK 3 S11: 0.3358 S12: 0.0484 S13: 0.0725 REMARK 3 S21: -0.2966 S22: 0.0018 S23: 0.1416 REMARK 3 S31: 0.0484 S32: -0.1770 S33: 0.0003 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: (CHAIN D AND RESID 1:10) REMARK 3 ORIGIN FOR THE GROUP (A): 15.7136 30.8205 29.2569 REMARK 3 T TENSOR REMARK 3 T11: 0.6148 T22: 0.4527 REMARK 3 T33: 0.5847 T12: -0.0088 REMARK 3 T13: -0.1734 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.0035 L22: 0.0008 REMARK 3 L33: -0.0001 L12: 0.0086 REMARK 3 L13: -0.0006 L23: -0.0037 REMARK 3 S TENSOR REMARK 3 S11: -0.3702 S12: 0.2315 S13: 0.2096 REMARK 3 S21: 0.4746 S22: -0.2711 S23: -0.0447 REMARK 3 S31: -0.2847 S32: -0.0549 S33: 0.0006 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: (CHAIN D AND RESID 11:15) REMARK 3 ORIGIN FOR THE GROUP (A): 12.7097 26.8931 17.4892 REMARK 3 T TENSOR REMARK 3 T11: 0.3601 T22: 0.4782 REMARK 3 T33: 0.5761 T12: 0.0876 REMARK 3 T13: -0.0035 T23: 0.0294 REMARK 3 L TENSOR REMARK 3 L11: 0.0119 L22: 0.0193 REMARK 3 L33: 0.0134 L12: 0.0157 REMARK 3 L13: 0.0108 L23: -0.0045 REMARK 3 S TENSOR REMARK 3 S11: -0.4224 S12: 0.2121 S13: 0.0741 REMARK 3 S21: -0.1830 S22: -0.1974 S23: 0.1037 REMARK 3 S31: -0.3062 S32: 0.1314 S33: 0.0007 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: (CHAIN D AND RESID 16:21) REMARK 3 ORIGIN FOR THE GROUP (A): 11.9175 17.9452 18.5551 REMARK 3 T TENSOR REMARK 3 T11: -0.0767 T22: 0.1597 REMARK 3 T33: 0.1342 T12: 0.1320 REMARK 3 T13: -0.4472 T23: -0.0693 REMARK 3 L TENSOR REMARK 3 L11: 0.3147 L22: 0.0227 REMARK 3 L33: 0.2155 L12: -0.0366 REMARK 3 L13: -0.0007 L23: -0.0547 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: -0.1657 S13: -0.2230 REMARK 3 S21: -0.1106 S22: 0.2480 S23: 0.0175 REMARK 3 S31: 0.0641 S32: -0.2173 S33: 0.1943 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: (CHAIN D AND RESID 22:25) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0785 11.0571 19.0480 REMARK 3 T TENSOR REMARK 3 T11: 0.2952 T22: 0.2715 REMARK 3 T33: 0.5779 T12: -0.1056 REMARK 3 T13: 0.1867 T23: -0.0740 REMARK 3 L TENSOR REMARK 3 L11: 0.0385 L22: 0.0884 REMARK 3 L33: 0.1036 L12: -0.0470 REMARK 3 L13: 0.0627 L23: -0.0740 REMARK 3 S TENSOR REMARK 3 S11: -0.0210 S12: -0.1329 S13: 0.0263 REMARK 3 S21: -0.1601 S22: 0.0299 S23: 0.2980 REMARK 3 S31: 0.0613 S32: -0.2783 S33: -0.0321 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: (CHAIN D AND RESID 26:29) REMARK 3 ORIGIN FOR THE GROUP (A): 20.1889 10.2654 24.5741 REMARK 3 T TENSOR REMARK 3 T11: 0.4287 T22: 0.1611 REMARK 3 T33: 0.5419 T12: 0.2549 REMARK 3 T13: 0.2180 T23: 0.0854 REMARK 3 L TENSOR REMARK 3 L11: 0.1257 L22: 0.0170 REMARK 3 L33: 0.1676 L12: -0.0293 REMARK 3 L13: 0.0510 L23: -0.0019 REMARK 3 S TENSOR REMARK 3 S11: 0.1433 S12: -0.1942 S13: 0.0422 REMARK 3 S21: -0.2164 S22: -0.0323 S23: 0.2045 REMARK 3 S31: 0.0143 S32: 0.1864 S33: 0.0306 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: (CHAIN D AND RESID 30:34) REMARK 3 ORIGIN FOR THE GROUP (A): 24.1009 14.0720 19.6314 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.4077 REMARK 3 T33: 0.3386 T12: 0.0127 REMARK 3 T13: 0.1255 T23: -0.0904 REMARK 3 L TENSOR REMARK 3 L11: 0.0074 L22: 0.1612 REMARK 3 L33: 0.0152 L12: -0.0009 REMARK 3 L13: 0.0057 L23: 0.0185 REMARK 3 S TENSOR REMARK 3 S11: 0.0544 S12: 0.2895 S13: -0.0888 REMARK 3 S21: -0.2488 S22: 0.0845 S23: 0.1843 REMARK 3 S31: -0.0202 S32: 0.1086 S33: 0.0935 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: (CHAIN D AND RESID 35:39) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0013 21.8652 19.0714 REMARK 3 T TENSOR REMARK 3 T11: 0.2760 T22: 0.3708 REMARK 3 T33: 0.5096 T12: 0.0939 REMARK 3 T13: 0.0008 T23: 0.0895 REMARK 3 L TENSOR REMARK 3 L11: 0.0027 L22: 0.0180 REMARK 3 L33: 0.0093 L12: -0.0013 REMARK 3 L13: -0.0002 L23: 0.0023 REMARK 3 S TENSOR REMARK 3 S11: 0.0666 S12: 0.0140 S13: -0.1396 REMARK 3 S21: -0.0208 S22: 0.2774 S23: -0.4499 REMARK 3 S31: -0.1957 S32: -0.0577 S33: -0.0015 REMARK 3 TLS GROUP : 24 REMARK 3 SELECTION: (CHAIN D AND RESID 40:43) REMARK 3 ORIGIN FOR THE GROUP (A): 23.8536 22.7172 24.7137 REMARK 3 T TENSOR REMARK 3 T11: 0.5737 T22: 0.5749 REMARK 3 T33: 0.2314 T12: -0.1450 REMARK 3 T13: 0.0230 T23: 0.0892 REMARK 3 L TENSOR REMARK 3 L11: 0.0209 L22: 0.0368 REMARK 3 L33: 0.0185 L12: -0.0288 REMARK 3 L13: 0.0168 L23: -0.0182 REMARK 3 S TENSOR REMARK 3 S11: 0.0978 S12: -0.0768 S13: -0.1588 REMARK 3 S21: -0.0373 S22: -0.1125 S23: -0.0067 REMARK 3 S31: -0.1417 S32: -0.0651 S33: 0.0041 REMARK 3 TLS GROUP : 25 REMARK 3 SELECTION: (CHAIN D AND RESID 44:53) REMARK 3 ORIGIN FOR THE GROUP (A): 15.6669 18.6418 28.8672 REMARK 3 T TENSOR REMARK 3 T11: 0.2927 T22: 0.3310 REMARK 3 T33: 0.2660 T12: 0.0865 REMARK 3 T13: 0.0314 T23: 0.0404 REMARK 3 L TENSOR REMARK 3 L11: 0.1683 L22: 0.0280 REMARK 3 L33: 0.0339 L12: -0.0768 REMARK 3 L13: -0.0297 L23: 0.0149 REMARK 3 S TENSOR REMARK 3 S11: -0.3281 S12: -0.4105 S13: -0.2236 REMARK 3 S21: -0.1294 S22: -0.1476 S23: 0.2286 REMARK 3 S31: 0.0922 S32: -0.0366 S33: -0.1739 REMARK 3 TLS GROUP : 26 REMARK 3 SELECTION: (CHAIN D AND RESID 54:57) REMARK 3 ORIGIN FOR THE GROUP (A): 6.6946 13.8898 29.2731 REMARK 3 T TENSOR REMARK 3 T11: 0.3472 T22: 0.6646 REMARK 3 T33: 0.5902 T12: 0.0292 REMARK 3 T13: 0.1105 T23: 0.1573 REMARK 3 L TENSOR REMARK 3 L11: 0.0157 L22: 0.0075 REMARK 3 L33: 0.0107 L12: 0.0037 REMARK 3 L13: 0.0139 L23: 0.0100 REMARK 3 S TENSOR REMARK 3 S11: -0.1588 S12: 0.0475 S13: -0.2136 REMARK 3 S21: 0.2614 S22: 0.1340 S23: -0.1430 REMARK 3 S31: -0.0509 S32: -0.0370 S33: -0.0000 REMARK 3 TLS GROUP : 27 REMARK 3 SELECTION: (CHAIN D AND RESID 58:61) REMARK 3 ORIGIN FOR THE GROUP (A): 0.7246 13.0738 29.8959 REMARK 3 T TENSOR REMARK 3 T11: 0.6043 T22: 0.9450 REMARK 3 T33: 0.5597 T12: -0.1899 REMARK 3 T13: 0.0735 T23: -0.0782 REMARK 3 L TENSOR REMARK 3 L11: 0.0143 L22: 0.0032 REMARK 3 L33: 0.0069 L12: 0.0084 REMARK 3 L13: 0.0061 L23: -0.0002 REMARK 3 S TENSOR REMARK 3 S11: -0.0418 S12: 0.0424 S13: -0.0325 REMARK 3 S21: -0.1541 S22: -0.0503 S23: 0.0669 REMARK 3 S31: 0.0768 S32: -0.0117 S33: 0.0001 REMARK 3 TLS GROUP : 28 REMARK 3 SELECTION: (CHAIN E AND RESID 1:7) REMARK 3 ORIGIN FOR THE GROUP (A): 24.5399 7.7776 36.8248 REMARK 3 T TENSOR REMARK 3 T11: 0.3137 T22: 0.5031 REMARK 3 T33: 0.5145 T12: 0.0186 REMARK 3 T13: -0.0177 T23: 0.0797 REMARK 3 L TENSOR REMARK 3 L11: -0.0032 L22: -0.0111 REMARK 3 L33: 0.0876 L12: -0.0059 REMARK 3 L13: 0.0375 L23: -0.0288 REMARK 3 S TENSOR REMARK 3 S11: -0.2232 S12: 0.6175 S13: 0.2760 REMARK 3 S21: 0.4126 S22: 0.2246 S23: 0.2470 REMARK 3 S31: -0.3645 S32: -0.2014 S33: -0.0002 REMARK 3 TLS GROUP : 29 REMARK 3 SELECTION: (CHAIN E AND RESID 8:11) REMARK 3 ORIGIN FOR THE GROUP (A): 9.1333 18.8519 42.0381 REMARK 3 T TENSOR REMARK 3 T11: 0.6514 T22: 0.6029 REMARK 3 T33: 0.7095 T12: 0.1944 REMARK 3 T13: 0.3776 T23: 0.1888 REMARK 3 L TENSOR REMARK 3 L11: 0.2670 L22: 0.3611 REMARK 3 L33: 0.2437 L12: -0.1398 REMARK 3 L13: 0.2487 L23: -0.2087 REMARK 3 S TENSOR REMARK 3 S11: -0.1328 S12: 0.3715 S13: 0.1155 REMARK 3 S21: 0.4620 S22: -0.2300 S23: 0.2862 REMARK 3 S31: 0.1625 S32: -0.2325 S33: -0.5082 REMARK 3 TLS GROUP : 30 REMARK 3 SELECTION: (CHAIN E AND RESID 12:15) REMARK 3 ORIGIN FOR THE GROUP (A): 8.9124 33.9177 35.7797 REMARK 3 T TENSOR REMARK 3 T11: 0.6857 T22: 0.8501 REMARK 3 T33: 0.7820 T12: 0.2468 REMARK 3 T13: -0.2537 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.0314 L22: 0.0124 REMARK 3 L33: 0.0256 L12: 0.0220 REMARK 3 L13: 0.0465 L23: 0.0213 REMARK 3 S TENSOR REMARK 3 S11: 0.0304 S12: 0.2195 S13: 0.2136 REMARK 3 S21: 0.4654 S22: 0.0058 S23: 0.1735 REMARK 3 S31: -0.4142 S32: 0.4941 S33: 0.0001 REMARK 3 TLS GROUP : 31 REMARK 3 SELECTION: (CHAIN F AND RESID 1:4) REMARK 3 ORIGIN FOR THE GROUP (A): -1.2004 30.9169 35.8541 REMARK 3 T TENSOR REMARK 3 T11: 0.5934 T22: 0.5613 REMARK 3 T33: 1.0158 T12: 0.1234 REMARK 3 T13: 0.0783 T23: -0.2127 REMARK 3 L TENSOR REMARK 3 L11: 0.0039 L22: 0.0121 REMARK 3 L33: 0.0123 L12: -0.0079 REMARK 3 L13: -0.0097 L23: 0.0121 REMARK 3 S TENSOR REMARK 3 S11: -0.5227 S12: 0.1825 S13: 0.0365 REMARK 3 S21: 0.3384 S22: -0.3967 S23: -0.0314 REMARK 3 S31: 0.0303 S32: -0.2169 S33: 0.0021 REMARK 3 TLS GROUP : 32 REMARK 3 SELECTION: (CHAIN F AND RESID 5:8) REMARK 3 ORIGIN FOR THE GROUP (A): 13.3539 24.8608 34.2385 REMARK 3 T TENSOR REMARK 3 T11: 0.4510 T22: 0.6002 REMARK 3 T33: 0.6253 T12: 0.1889 REMARK 3 T13: -0.0124 T23: -0.1446 REMARK 3 L TENSOR REMARK 3 L11: 0.1177 L22: 0.1528 REMARK 3 L33: 0.1068 L12: 0.0906 REMARK 3 L13: -0.0166 L23: -0.0912 REMARK 3 S TENSOR REMARK 3 S11: -0.0422 S12: -0.0361 S13: 0.2468 REMARK 3 S21: 0.6040 S22: -0.2588 S23: 0.1596 REMARK 3 S31: -0.1513 S32: 0.0768 S33: -0.0019 REMARK 3 TLS GROUP : 33 REMARK 3 SELECTION: (CHAIN F AND RESID 9:15) REMARK 3 ORIGIN FOR THE GROUP (A): 19.4277 8.6440 41.0414 REMARK 3 T TENSOR REMARK 3 T11: 0.9787 T22: 0.6901 REMARK 3 T33: 0.7408 T12: 0.1810 REMARK 3 T13: -0.1712 T23: 0.0503 REMARK 3 L TENSOR REMARK 3 L11: 1.1370 L22: 0.9820 REMARK 3 L33: 0.7148 L12: -0.4762 REMARK 3 L13: -0.7904 L23: 0.6078 REMARK 3 S TENSOR REMARK 3 S11: -0.5542 S12: 0.2338 S13: -0.3188 REMARK 3 S21: 0.5403 S22: 0.0877 S23: -0.4156 REMARK 3 S31: -0.5182 S32: -0.3548 S33: -0.0582 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5JLX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220815. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAR-16 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 - 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97872 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11412 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.748 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.15200 REMARK 200 R SYM (I) : 0.06400 REMARK 200 FOR THE DATA SET : 4.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 6.20 REMARK 200 R MERGE FOR SHELL (I) : 1.30200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4XID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20MM BIS-TRIS PROPANE, 10MM NICL2, 4 REMARK 280 -6% 2-METHYL-2,4-PENTANEDIOL, PH 7.0, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 45.93800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 45.93800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE ARE TWO PROTEIN:DNA COMPLEXES IN THE A.U. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8670 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -23.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 106 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 ARG A 1 REMARK 465 LYS A 2 REMARK 465 ARG A 3 REMARK 465 MET D 0 REMARK 465 ARG D 1 REMARK 465 LYS D 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 58 NZ REMARK 470 ARG D 3 NE CZ NH1 NH2 REMARK 470 LYS D 58 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP2 DA E 5 O HOH E 201 1.85 REMARK 500 O HOH C 106 O HOH C 107 2.07 REMARK 500 O HOH C 104 O HOH C 107 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DG B 1 O3' DG B 1 C3' -0.036 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DG B 1 O4' - C1' - N9 ANGL. DEV. = 2.4 DEGREES REMARK 500 DA B 2 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DT F 5 O4' - C1' - N1 ANGL. DEV. = 1.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 21 NE2 REMARK 620 2 HIS D 21 NE2 88.0 REMARK 620 3 HOH D 103 O 76.8 68.2 REMARK 620 4 HOH A 203 O 78.2 82.1 141.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI E 101 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG E 2 N7 REMARK 620 2 HOH E 203 O 82.6 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI A 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI B 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NI E 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide DC E 7 and C7S E REMARK 800 8 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for Di-nucleotide C7S E 8 and DA E REMARK 800 9 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5JLW RELATED DB: PDB DBREF 5JLX A 1 60 UNP P02833 ANTP_DROME 297 356 DBREF 5JLX B 0 14 PDB 5JLX 5JLX 0 14 DBREF 5JLX C 0 14 PDB 5JLX 5JLX 0 14 DBREF 5JLX D 1 60 UNP P02833 ANTP_DROME 297 356 DBREF 5JLX E 1 15 PDB 5JLX 5JLX 1 15 DBREF 5JLX F 1 15 PDB 5JLX 5JLX 1 15 SEQADV 5JLX MET A 0 UNP P02833 EXPRESSION TAG SEQADV 5JLX SER A 39 UNP P02833 CYS 335 ENGINEERED MUTATION SEQADV 5JLX MET D 0 UNP P02833 EXPRESSION TAG SEQADV 5JLX SER D 39 UNP P02833 CYS 335 ENGINEERED MUTATION SEQRES 1 A 61 MET ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR GLN SEQRES 2 A 61 THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG TYR SEQRES 3 A 61 LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA LEU SEQRES 4 A 61 SER LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN ASN SEQRES 5 A 61 ARG ARG MET LYS TRP LYS LYS GLU ASN SEQRES 1 B 15 DA DG DA DA DA DG DC C7S DA DT DT DA DG SEQRES 2 B 15 DA DG SEQRES 1 C 15 DT DC DT DC DT DA DA DT DG DG DC DT DT SEQRES 2 C 15 DT DC SEQRES 1 D 61 MET ARG LYS ARG GLY ARG GLN THR TYR THR ARG TYR GLN SEQRES 2 D 61 THR LEU GLU LEU GLU LYS GLU PHE HIS PHE ASN ARG TYR SEQRES 3 D 61 LEU THR ARG ARG ARG ARG ILE GLU ILE ALA HIS ALA LEU SEQRES 4 D 61 SER LEU THR GLU ARG GLN ILE LYS ILE TRP PHE GLN ASN SEQRES 5 D 61 ARG ARG MET LYS TRP LYS LYS GLU ASN SEQRES 1 E 15 DA DG DA DA DA DG DC C7S DA DT DT DA DG SEQRES 2 E 15 DA DG SEQRES 1 F 15 DT DC DT DC DT DA DA DT DG DG DC DT DT SEQRES 2 F 15 DT DC HET C7S B 7 19 HET C7S E 8 19 HET NI A 101 1 HET NI B 101 1 HET NI E 101 1 HETNAM C7S 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE HETNAM NI NICKEL (II) ION HETSYN C7S 2'-DEOXY-5'-O-THIOPHOSPHONOCYTIDINE (THIOPHOSPHO HETSYN 2 C7S CONNECTION ISOFORM 2) FORMUL 2 C7S 2(C9 H14 N3 O6 P S) FORMUL 7 NI 3(NI 2+) FORMUL 10 HOH *29(H2 O) HELIX 1 AA1 THR A 9 HIS A 21 1 13 HELIX 2 AA2 THR A 27 LEU A 38 1 12 HELIX 3 AA3 THR A 41 ASN A 60 1 20 HELIX 4 AA4 THR D 9 ASN D 23 1 15 HELIX 5 AA5 THR D 27 LEU D 38 1 12 HELIX 6 AA6 THR D 41 ASN D 60 1 20 LINK NE2 HIS A 21 NI NI A 101 1555 1555 2.18 LINK N7 DG B 1 NI NI B 101 1555 1555 2.60 LINK O3' DC B 6 P C7S B 7 1555 1555 1.60 LINK O3' C7S B 7 P DA B 8 1555 1555 1.61 LINK NE2 HIS D 21 NI NI A 101 1555 1555 2.19 LINK N7 DG E 2 NI NI E 101 1555 1555 2.47 LINK O3' DC E 7 P C7S E 8 1555 1555 1.60 LINK O3' C7S E 8 P DA E 9 1555 1555 1.62 LINK NI NI A 101 O HOH D 103 1555 1555 2.22 LINK NI NI A 101 O HOH A 203 1555 1555 1.91 LINK NI NI E 101 O HOH E 203 1555 1555 1.94 SITE 1 AC1 6 HIS A 21 HOH A 203 HIS D 21 LYS D 58 SITE 2 AC1 6 ASN D 60 HOH D 103 SITE 1 AC2 1 DG B 1 SITE 1 AC3 2 DG E 2 HOH E 203 SITE 1 AC4 9 TYR D 25 GLN D 50 ARG D 53 MET D 54 SITE 2 AC4 9 LYS D 57 DG E 6 DA E 9 DG F 9 SITE 3 AC4 9 DG F 10 SITE 1 AC5 7 MET D 54 LYS D 57 DC E 7 DT E 10 SITE 2 AC5 7 DA F 7 DT F 8 DG F 9 CRYST1 60.864 75.581 91.876 90.00 90.00 90.00 P 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016430 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013231 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010884 0.00000 MASTER 832 0 5 6 0 0 9 6 0 0 0 18 END