HEADER IMMUNE SYSTEM 13-APR-16 5JBJ TITLE CRYSTAL STRUCTURE OF CHICKEN LGP2 WITH 5'P 12-MER DSRNA AT 3.6 A TITLE 2 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: LGP2; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: RNA (5'-R(P*GP*GP*UP*AP*GP*CP*GP*CP*UP*AP*CP*C)-3'); COMPND 8 CHAIN: X, Y; COMPND 9 ENGINEERED: YES; COMPND 10 OTHER_DETAILS: SYNTHETIC RNA 5 PRIME MONO PHOSPHATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 3 ORGANISM_COMMON: CHICKEN; SOURCE 4 ORGANISM_TAXID: 9031; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: ROSETTA 2; SOURCE 8 MOL_ID: 2; SOURCE 9 SYNTHETIC: YES; SOURCE 10 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 11 ORGANISM_TAXID: 32630 KEYWDS INNATE IMMUNE PATTERN RECOGNITION RECEPTOR, RIG-I LIKE HELICASE, KEYWDS 2 DSRNA DEPENDENT ATPASE, ZINC-CONTAINING CTD DOMAIN, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR S.CUSACK,E.UCHIKAWA,M.LETHIER REVDAT 1 01-JUN-16 5JBJ 0 JRNL AUTH E.UCHIKAWA,M.LETHIER,H.MALET,J.BRUNEL,D.GERLIER,S.CUSACK JRNL TITL STRUCTURAL ANALYSIS OF DSRNA BINDING TO ANTI-VIRAL PATTERN JRNL TITL 2 RECOGNITION RECEPTORS LGP2 AND MDA5. JRNL REF MOL.CELL V. 62 586 2016 JRNL REFN ISSN 1097-2765 JRNL PMID 27203181 JRNL DOI 10.1016/J.MOLCEL.2016.04.021 REMARK 2 REMARK 2 RESOLUTION. 3.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.8.0135 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 78.02 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 10121 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.256 REMARK 3 R VALUE (WORKING SET) : 0.253 REMARK 3 FREE R VALUE : 0.319 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 542 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.58 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 738 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.11 REMARK 3 BIN R VALUE (WORKING SET) : 0.3590 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.3460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5007 REMARK 3 NUCLEIC ACID ATOMS : 512 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 202.3 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -1.40000 REMARK 3 B12 (A**2) : 0.22000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.860 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.855 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 59.059 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.935 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5694 ; 0.006 ; 0.018 REMARK 3 BOND LENGTHS OTHERS (A): 5152 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7799 ; 0.954 ; 1.869 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11823 ; 0.857 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 628 ; 5.159 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;33.078 ;23.566 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 916 ;11.876 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 48 ;11.038 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 860 ; 0.055 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6138 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1384 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2518 ; 4.585 ;20.666 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2517 ; 4.585 ;20.665 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3144 ; 7.897 ;30.989 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3145 ; 7.896 ;30.990 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3174 ; 3.612 ;20.234 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 3173 ; 3.608 ;20.235 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 4653 ; 6.344 ;30.213 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 6310 ;11.442 ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 6311 ;11.441 ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 5JBJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-APR-16. REMARK 100 THE DEPOSITION ID IS D_1000220307. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-FEB-14 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS3 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10663 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.580 REMARK 200 RESOLUTION RANGE LOW (A) : 78.020 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 78.0 REMARK 200 DATA REDUNDANCY : 11.51 REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.7400 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.32 REMARK 200 R MERGE FOR SHELL (I) : 1.18000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 5JB2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.57 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CHLGP2, DIRECTLY AFTER SIZE EXCLUSION REMARK 280 CHROMATOGRAPHY, WAS MIXED WITH DSRNA IN A 1:1 RATIO AND REMARK 280 INCUBATED FOR 30 MINUTES ON ICE. THE COMPLEX WAS CONCENTRATED REMARK 280 WITH AN AMICON ULTRA CONCENTRATOR TO AROUND 10 MG/ML AND THEN 2 REMARK 280 MM ADP:ALF4 AND 2 MM MGCL2 WERE ADDED. CHLGP2:12BP DSRNA:ADP: REMARK 280 ALF4 COMPLEX WAS MIXED WITH RESERVOIR BUFFER (0.1 M BIS-TRIS REMARK 280 PROPANE PH 6.5, 0.05-0.1 M MAGNESIUM FORMATE) IN A 2:1 RATIO, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 64 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+1/3 REMARK 290 6555 X-Y,X,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.57667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.15333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 65.57667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 131.15333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33110 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -56.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, X, Y REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -5 REMARK 465 ALA A -4 REMARK 465 MET A -3 REMARK 465 GLY A -2 REMARK 465 GLY A -1 REMARK 465 GLY A 0 REMARK 465 GLN A 201 REMARK 465 GLU A 202 REMARK 465 HIS A 203 REMARK 465 ALA A 204 REMARK 465 GLN A 205 REMARK 465 HIS A 206 REMARK 465 LEU A 207 REMARK 465 GLN A 208 REMARK 465 SER A 209 REMARK 465 HIS A 210 REMARK 465 VAL A 211 REMARK 465 PRO A 212 REMARK 465 GLN A 213 REMARK 465 PRO A 214 REMARK 465 THR A 215 REMARK 465 LYS A 216 REMARK 465 GLN A 217 REMARK 465 TYR A 218 REMARK 465 ASP A 219 REMARK 465 LEU A 220 REMARK 465 CYS A 221 REMARK 465 GLN A 222 REMARK 465 GLU A 223 REMARK 465 ARG A 314 REMARK 465 ASP A 315 REMARK 465 THR A 316 REMARK 465 LYS A 317 REMARK 465 GLU A 345 REMARK 465 SER A 485 REMARK 465 ARG A 486 REMARK 465 GLU A 487 REMARK 465 VAL A 488 REMARK 465 TYR A 489 REMARK 465 ARG A 490 REMARK 465 GLU A 491 REMARK 465 GLN A 492 REMARK 465 LEU A 493 REMARK 465 ASN A 494 REMARK 465 GLU A 495 REMARK 465 SER A 496 REMARK 465 LEU A 497 REMARK 465 VAL A 498 REMARK 465 GLY A 499 REMARK 465 ASP A 671 REMARK 465 GLU A 672 REMARK 465 SER A 673 REMARK 465 LEU A 674 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 1 CB OG REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 67 -67.09 -121.99 REMARK 500 LEU A 127 105.01 -163.32 REMARK 500 THR A 136 80.47 -65.16 REMARK 500 LYS A 138 -136.44 56.28 REMARK 500 GLU A 139 41.96 -108.19 REMARK 500 GLU A 245 68.03 61.86 REMARK 500 GLN A 251 53.29 -114.51 REMARK 500 PHE A 273 71.98 64.11 REMARK 500 PHE A 273 71.84 64.11 REMARK 500 VAL A 297 -148.69 -119.05 REMARK 500 PHE A 360 47.56 -100.22 REMARK 500 ASP A 387 57.71 -105.20 REMARK 500 MET A 413 -152.19 -89.94 REMARK 500 MET A 457 64.87 -152.15 REMARK 500 ASN A 474 76.81 -101.41 REMARK 500 MET A 573 -62.24 -151.37 REMARK 500 SER A 589 -75.83 -79.74 REMARK 500 ARG A 624 -84.41 54.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 701 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 554 SG REMARK 620 2 CYS A 557 SG 104.2 REMARK 620 3 CYS A 610 SG 107.2 118.2 REMARK 620 4 CYS A 613 SG 107.2 109.7 109.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue ZN A 701 DBREF 5JBJ A 2 674 UNP G0YYQ5 G0YYQ5_CHICK 2 674 DBREF 5JBJ X 1 12 PDB 5JBJ 5JBJ 1 12 DBREF 5JBJ Y 13 24 PDB 5JBJ 5JBJ 13 24 SEQADV 5JBJ GLY A -5 UNP G0YYQ5 EXPRESSION TAG SEQADV 5JBJ ALA A -4 UNP G0YYQ5 EXPRESSION TAG SEQADV 5JBJ MET A -3 UNP G0YYQ5 EXPRESSION TAG SEQADV 5JBJ GLY A -2 UNP G0YYQ5 EXPRESSION TAG SEQADV 5JBJ GLY A -1 UNP G0YYQ5 EXPRESSION TAG SEQADV 5JBJ GLY A 0 UNP G0YYQ5 EXPRESSION TAG SEQADV 5JBJ SER A 1 UNP G0YYQ5 EXPRESSION TAG SEQRES 1 A 680 GLY ALA MET GLY GLY GLY SER GLU LEU HIS GLY TYR GLN SEQRES 2 A 680 LEU GLU ALA VAL ALA PRO ALA LEU ARG GLY ARG ASN SER SEQRES 3 A 680 ILE VAL TRP LEU PRO THR GLY ALA GLY LYS THR ARG ALA SEQRES 4 A 680 ALA VAL HIS VAL CYS ARG ARG HIS LEU GLU GLY ARG ARG SEQRES 5 A 680 GLY GLY ARG VAL ALA VAL LEU VAL ASN LYS VAL HIS LEU SEQRES 6 A 680 VAL GLN GLN HIS LEU GLU LYS GLU PHE HIS VAL LEU ARG SEQRES 7 A 680 ASP ALA PHE LYS VAL THR ALA VAL SER GLY ASP SER SER SEQRES 8 A 680 HIS LYS CYS PHE PHE GLY GLN LEU ALA LYS GLY SER ASP SEQRES 9 A 680 VAL VAL ILE CYS THR ALA GLN ILE LEU GLN ASN ALA LEU SEQRES 10 A 680 LEU SER GLY GLU GLU GLU ALA ARG VAL GLU LEU THR ASP SEQRES 11 A 680 PHE SER LEU LEU VAL ILE ASP GLU CYS HIS HIS THR GLN SEQRES 12 A 680 LYS GLU ALA VAL TYR ASN LYS ILE MET LEU SER TYR LEU SEQRES 13 A 680 GLN LYS LYS LEU SER GLY GLN ARG ASP LEU PRO GLN ILE SEQRES 14 A 680 LEU GLY LEU THR ALA SER PRO GLY THR GLY GLY GLU THR SEQRES 15 A 680 SER PHE GLU GLY ALA VAL GLU HIS ILE LEU GLN ILE CYS SEQRES 16 A 680 ALA ASN LEU ASP THR GLU VAL ILE ALA SER ALA GLN GLU SEQRES 17 A 680 HIS ALA GLN HIS LEU GLN SER HIS VAL PRO GLN PRO THR SEQRES 18 A 680 LYS GLN TYR ASP LEU CYS GLN GLU ARG GLU GLN ASP PRO SEQRES 19 A 680 PHE GLY GLN ARG LEU LYS LYS ILE MET ALA GLN ILE GLN SEQRES 20 A 680 GLU HIS MET GLU MET PRO GLU LEU PRO GLN ASN PHE GLY SEQRES 21 A 680 THR GLN VAL TYR GLU GLN ARG ILE VAL GLU LEU GLU ASN SEQRES 22 A 680 ARG ALA ALA GLU ARG PHE CYS ARG LYS THR ARG VAL CYS SEQRES 23 A 680 ALA LEU HIS LEU ARG ARG TYR ASN ASP ALA LEU LEU ILE SEQRES 24 A 680 ASN ASP THR VAL ARG MET MET ASP ALA PHE GLN CYS LEU SEQRES 25 A 680 GLN GLN PHE TYR ALA ASP LYS ARG ASP THR LYS ASP PRO SEQRES 26 A 680 THR GLU ARG PHE LEU ALA THR THR PHE GLU GLU ASN ARG SEQRES 27 A 680 ALA THR LEU GLN ALA LEU ALA GLY ASP GLN ARG TYR GLU SEQRES 28 A 680 ASN PRO ARG LEU SER LYS LEU GLU GLU ILE LEU GLN GLU SEQRES 29 A 680 HIS PHE GLN PRO PRO GLY SER SER ARG GLY ILE VAL PHE SEQRES 30 A 680 THR LYS THR ARG GLN SER ALA HIS SER LEU LEU SER TRP SEQRES 31 A 680 LEU GLN ASP THR ALA GLY LEU CYS GLY GLN HIS ILE ARG SEQRES 32 A 680 ALA ALA VAL LEU THR GLY SER GLY HIS SER ASN GLN ALA SEQRES 33 A 680 LYS GLY MET THR GLN ASN GLU GLN GLN ASP VAL ILE THR SEQRES 34 A 680 LEU PHE ARG TYR GLY GLU LEU ASN LEU LEU PHE SER THR SEQRES 35 A 680 SER VAL ALA GLU GLU GLY LEU ASP ILE PRO GLU CYS ASN SEQRES 36 A 680 ILE VAL VAL ARG TYR GLY LEU MET THR ASN GLU ILE ALA SEQRES 37 A 680 MET VAL GLN ALA GLN GLY ARG ALA ARG ALA GLN ASN SER SEQRES 38 A 680 MET TYR SER VAL LEU ALA LYS ALA ASN SER ARG GLU VAL SEQRES 39 A 680 TYR ARG GLU GLN LEU ASN GLU SER LEU VAL GLY LEU MET SEQRES 40 A 680 GLU ARG ALA ILE ARG ALA VAL GLN ALA MET PRO GLU ARG SEQRES 41 A 680 LYS TYR ARG LEU LYS ILE VAL GLU LEU GLN ARG ASN ALA SEQRES 42 A 680 VAL LEU SER TRP GLN VAL LYS GLU ALA ARG SER SER GLU SEQRES 43 A 680 ARG ARG GLN LEU HIS ASP PRO ASP ASP VAL TYR PHE HIS SEQRES 44 A 680 CYS VAL ASN CYS ASN VAL ALA VAL CYS ARG GLY SER ASP SEQRES 45 A 680 ILE ARG THR VAL GLU ALA MET HIS HIS VAL ASN ILE ASN SEQRES 46 A 680 PRO ASN PHE ARG PHE TYR TYR THR VAL SER SER GLY LYS SEQRES 47 A 680 ILE HIS PHE GLU ARG THR PHE ARG ASP TRP GLU PRO GLY SEQRES 48 A 680 CYS ARG ILE VAL CYS SER GLU CYS ARG GLN GLU TRP GLY SEQRES 49 A 680 MET GLU MET ILE TYR ARG ASN VAL THR LEU PRO ILE LEU SEQRES 50 A 680 SER ILE LYS ASN PHE VAL VAL VAL THR PRO ASP GLU LYS SEQRES 51 A 680 LYS LYS TYR LYS LYS TRP SER THR VAL THR PHE PRO ILE SEQRES 52 A 680 GLU GLU PHE SER TYR LEU GLU TYR CYS SER SER THR GLN SEQRES 53 A 680 ASP GLU SER LEU SEQRES 1 X 12 G G U A G C G C U A C C SEQRES 1 Y 12 G G U A G C G C U A C C HET ZN A 701 1 HETNAM ZN ZINC ION FORMUL 4 ZN ZN 2+ HELIX 1 AA1 HIS A 4 ARG A 16 1 13 HELIX 2 AA2 GLY A 29 GLY A 44 1 16 HELIX 3 AA3 VAL A 57 GLU A 67 1 11 HELIX 4 AA4 PHE A 68 ALA A 74 5 7 HELIX 5 AA5 PHE A 89 SER A 97 1 9 HELIX 6 AA6 ALA A 104 SER A 113 1 10 HELIX 7 AA7 CYS A 133 THR A 136 5 4 HELIX 8 AA8 ALA A 140 SER A 155 1 16 HELIX 9 AA9 SER A 177 LEU A 192 1 16 HELIX 10 AB1 ASP A 227 GLU A 245 1 19 HELIX 11 AB2 THR A 255 PHE A 273 1 19 HELIX 12 AB3 CYS A 274 VAL A 297 1 24 HELIX 13 AB4 ARG A 298 ASP A 312 1 15 HELIX 14 AB5 PRO A 319 ASP A 341 1 23 HELIX 15 AB6 PRO A 347 PHE A 360 1 14 HELIX 16 AB7 THR A 374 ASP A 387 1 14 HELIX 17 AB8 THR A 414 TYR A 427 1 14 HELIX 18 AB9 ASN A 459 GLY A 468 1 10 HELIX 19 AC1 MET A 501 ALA A 510 1 10 HELIX 20 AC2 PRO A 512 GLN A 543 1 32 HELIX 21 AC3 ASN A 579 PHE A 584 5 6 HELIX 22 AC4 SER A 661 GLN A 670 1 10 SHEET 1 AA1 7 VAL A 77 VAL A 80 0 SHEET 2 AA1 7 VAL A 99 THR A 103 1 O ILE A 101 N VAL A 80 SHEET 3 AA1 7 VAL A 50 VAL A 54 1 N VAL A 52 O VAL A 100 SHEET 4 AA1 7 LEU A 127 ASP A 131 1 O VAL A 129 N ALA A 51 SHEET 5 AA1 7 GLN A 162 THR A 167 1 O GLN A 162 N LEU A 128 SHEET 6 AA1 7 SER A 20 TRP A 23 1 N VAL A 22 O GLY A 165 SHEET 7 AA1 7 VAL A 196 ALA A 198 1 O ALA A 198 N TRP A 23 SHEET 1 AA2 4 ALA A 398 LEU A 401 0 SHEET 2 AA2 4 LEU A 432 SER A 435 1 O PHE A 434 N ALA A 399 SHEET 3 AA2 4 GLY A 368 PHE A 371 1 N VAL A 370 O LEU A 433 SHEET 4 AA2 4 ILE A 450 ARG A 453 1 O VAL A 452 N ILE A 369 SHEET 1 AA3 4 ALA A 560 ARG A 563 0 SHEET 2 AA3 4 TYR A 551 CYS A 554 -1 N PHE A 552 O CYS A 562 SHEET 3 AA3 4 PHE A 636 VAL A 639 -1 O VAL A 639 N TYR A 551 SHEET 4 AA3 4 LYS A 644 LYS A 645 -1 O LYS A 645 N VAL A 638 SHEET 1 AA4 6 ILE A 567 VAL A 570 0 SHEET 2 AA4 6 HIS A 574 ASN A 577 -1 O HIS A 574 N VAL A 570 SHEET 3 AA4 6 VAL A 626 LEU A 631 -1 O LEU A 631 N HIS A 575 SHEET 4 AA4 6 GLU A 616 TYR A 623 -1 N MET A 619 O ILE A 630 SHEET 5 AA4 6 PRO A 604 CYS A 610 -1 N ILE A 608 O TRP A 617 SHEET 6 AA4 6 TYR A 586 LYS A 592 -1 N THR A 587 O VAL A 609 LINK SG CYS A 554 ZN ZN A 701 1555 1555 2.35 LINK SG CYS A 557 ZN ZN A 701 1555 1555 2.34 LINK SG CYS A 610 ZN ZN A 701 1555 1555 2.35 LINK SG CYS A 613 ZN ZN A 701 1555 1555 2.34 CISPEP 1 GLN A 361 PRO A 362 0 11.62 SITE 1 AC1 4 CYS A 554 CYS A 557 CYS A 610 CYS A 613 CRYST1 90.090 90.090 196.730 90.00 90.00 120.00 P 64 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011100 0.006409 0.000000 0.00000 SCALE2 0.000000 0.012817 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005083 0.00000 MASTER 372 0 1 22 21 0 1 6 0 0 0 55 END