HEADER OXIDOREDUCTASE 28-MAR-16 5J0F TITLE MONOMERIC HUMAN CU,ZN SUPEROXIDE DISMUTASE, LOOPS IV AND VII DELETED, TITLE 2 APO FORM, CIRCULAR PERMUTANT P4/5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SUPEROXIDE DISMUTASE [CU-ZN],OXIDOREDUCTASE,SUPEROXIDE COMPND 3 DISMUTASE [CU-ZN]; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: SUPEROXIDE DISMUTASE 1,HSOD1,SUPEROXIDE DISMUTASE 1,HSOD1; COMPND 6 EC: 1.15.1.1,1.15.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN, HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: SOD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI K-12; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 83333 KEYWDS SOD1, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR H.WANG,L.LANG,D.LOGAN,J.DANIELSSON,M.OLIVEBERG REVDAT 2 17-JAN-18 5J0F 1 REMARK REVDAT 1 01-FEB-17 5J0F 0 JRNL AUTH H.WANG,L.LANG,D.T.LOGAN,J.DANIELSSON,M.OLIVEBERG JRNL TITL TRICKING A PROTEIN TO SWAP STRANDS. JRNL REF J. AM. CHEM. SOC. V. 138 15571 2016 JRNL REFN ESSN 1520-5126 JRNL PMID 27783493 JRNL DOI 10.1021/JACS.6B05151 REMARK 2 REMARK 2 RESOLUTION. 1.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 53233 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.131 REMARK 3 R VALUE (WORKING SET) : 0.129 REMARK 3 FREE R VALUE : 0.170 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.25 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.28 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3955 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 237 REMARK 3 BIN FREE R VALUE : 0.2320 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 30 REMARK 3 SOLVENT ATOMS : 263 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.08000 REMARK 3 B22 (A**2) : 0.08000 REMARK 3 B33 (A**2) : -0.25000 REMARK 3 B12 (A**2) : 0.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.037 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.041 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.022 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.084 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1631 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1604 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2195 ; 2.004 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3690 ; 0.905 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 226 ; 7.959 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;45.017 ;25.714 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 252 ;11.732 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;22.320 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 257 ; 0.147 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1890 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 334 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 910 ; 4.548 ; 1.710 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 909 ; 4.544 ; 1.708 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1134 ; 5.463 ; 2.577 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 3235 ; 5.663 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 69 ;53.620 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 3414 ;24.168 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 5J0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 29-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000219763. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-NOV-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : MAX II REMARK 200 BEAMLINE : I911-3 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56396 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.250 REMARK 200 RESOLUTION RANGE LOW (A) : 46.360 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 29.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.29 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.56300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4BCZ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.32 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.17 M AMMONIUM SULFATE, 25.5 % W/V REMARK 280 PEG 4K, 15 % V/V GLYCEROL, EVAPORATION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.34000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.17000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 34.75500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.58500 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 57.92500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL B 202 O HOH B 301 1.58 REMARK 500 CD GLU A 85 O HOH A 303 1.93 REMARK 500 OE1 GLU A 85 O HOH A 301 2.05 REMARK 500 O HOH B 332 O HOH B 398 2.10 REMARK 500 O GLY B 64 O LYS B 87 2.13 REMARK 500 NZ LYS A 67 OE2 GLU A 85 2.15 REMARK 500 NE2 GLN A 60 O HOH A 302 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 436 O HOH B 341 6554 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 85 CD GLU A 85 OE2 -0.122 REMARK 500 TRP A 96 CD2 TRP A 96 CE3 -0.096 REMARK 500 SER A 98 CB SER A 98 OG -0.099 REMARK 500 GLU B 85 CD GLU B 85 OE1 -0.098 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLU A 85 OE1 - CD - OE2 ANGL. DEV. = -12.6 DEGREES REMARK 500 ASP B 16 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 61 -139.45 -136.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 48 SER B 49 -123.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 440 DISTANCE = 6.55 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue GOL B 202 DBREF 5J0F A 2 43 UNP P00441 SODC_HUMAN 83 124 DBREF 5J0F A 48 60 PDB 5J0F 5J0F 48 60 DBREF 5J0F A 65 112 UNP P00441 SODC_HUMAN 2 49 DBREF 5J0F B 2 43 UNP P00441 SODC_HUMAN 83 124 DBREF 5J0F B 48 60 PDB 5J0F 5J0F 48 60 DBREF 5J0F B 65 112 UNP P00441 SODC_HUMAN 2 49 SEQADV 5J0F ALA A 1 UNP P00441 EXPRESSION TAG SEQADV 5J0F SER A 31 UNP P00441 CYS 112 CONFLICT SEQADV 5J0F GLY A 44 UNP P00441 LINKER SEQADV 5J0F ALA A 45 UNP P00441 LINKER SEQADV 5J0F GLY A 46 UNP P00441 LINKER SEQADV 5J0F ALA A 47 UNP P00441 LINKER SEQADV 5J0F ALA A 61 UNP P00441 LINKER SEQADV 5J0F GLY A 62 UNP P00441 LINKER SEQADV 5J0F ALA A 63 UNP P00441 LINKER SEQADV 5J0F GLY A 64 UNP P00441 LINKER SEQADV 5J0F ALA A 70 UNP P00441 CYS 7 CONFLICT SEQADV 5J0F GLY A 113 UNP P00441 EXPRESSION TAG SEQADV 5J0F ALA A 114 UNP P00441 EXPRESSION TAG SEQADV 5J0F ALA B 1 UNP P00441 EXPRESSION TAG SEQADV 5J0F SER B 31 UNP P00441 CYS 112 CONFLICT SEQADV 5J0F GLY B 44 UNP P00441 LINKER SEQADV 5J0F ALA B 45 UNP P00441 LINKER SEQADV 5J0F GLY B 46 UNP P00441 LINKER SEQADV 5J0F ALA B 47 UNP P00441 LINKER SEQADV 5J0F ALA B 61 UNP P00441 LINKER SEQADV 5J0F GLY B 62 UNP P00441 LINKER SEQADV 5J0F ALA B 63 UNP P00441 LINKER SEQADV 5J0F GLY B 64 UNP P00441 LINKER SEQADV 5J0F ALA B 70 UNP P00441 CYS 7 CONFLICT SEQADV 5J0F GLY B 113 UNP P00441 EXPRESSION TAG SEQADV 5J0F ALA B 114 UNP P00441 EXPRESSION TAG SEQRES 1 A 114 ALA GLY ASP LEU GLY ASN VAL THR ALA ASP LYS ASP GLY SEQRES 2 A 114 VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SER LEU SEQRES 3 A 114 SER GLY ASP HIS SER ILE ILE GLY ARG THR LEU VAL VAL SEQRES 4 A 114 HIS GLU LYS ALA GLY ALA GLY ALA GLY SER ARG LEU ALA SEQRES 5 A 114 SER GLY VAL ILE GLY ILE ALA GLN ALA GLY ALA GLY ALA SEQRES 6 A 114 THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO VAL SEQRES 7 A 114 GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN GLY SEQRES 8 A 114 PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR GLU SEQRES 9 A 114 GLY LEU HIS GLY PHE HIS VAL HIS GLY ALA SEQRES 1 B 114 ALA GLY ASP LEU GLY ASN VAL THR ALA ASP LYS ASP GLY SEQRES 2 B 114 VAL ALA ASP VAL SER ILE GLU ASP SER VAL ILE SER LEU SEQRES 3 B 114 SER GLY ASP HIS SER ILE ILE GLY ARG THR LEU VAL VAL SEQRES 4 B 114 HIS GLU LYS ALA GLY ALA GLY ALA GLY SER ARG LEU ALA SEQRES 5 B 114 SER GLY VAL ILE GLY ILE ALA GLN ALA GLY ALA GLY ALA SEQRES 6 B 114 THR LYS ALA VAL ALA VAL LEU LYS GLY ASP GLY PRO VAL SEQRES 7 B 114 GLN GLY ILE ILE ASN PHE GLU GLN LYS GLU SER ASN GLY SEQRES 8 B 114 PRO VAL LYS VAL TRP GLY SER ILE LYS GLY LEU THR GLU SEQRES 9 B 114 GLY LEU HIS GLY PHE HIS VAL HIS GLY ALA HET GOL A 201 6 HET GOL A 202 6 HET GOL A 203 6 HET GOL B 201 6 HET GOL B 202 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 5(C3 H8 O3) FORMUL 8 HOH *263(H2 O) SHEET 1 AA1 8 ASP A 3 ALA A 9 0 SHEET 2 AA1 8 GLY A 105 HIS A 112 -1 O GLY A 105 N ALA A 9 SHEET 3 AA1 8 THR A 36 HIS A 40 -1 N THR A 36 O HIS A 112 SHEET 4 AA1 8 LEU A 51 ALA A 59 -1 O GLY A 54 N LEU A 37 SHEET 5 AA1 8 THR A 66 LYS A 73 -1 O VAL A 69 N GLY A 57 SHEET 6 AA1 8 GLN A 79 GLN A 86 -1 O ILE A 82 N ALA A 70 SHEET 7 AA1 8 VAL A 93 LYS A 100 -1 O TRP A 96 N ASN A 83 SHEET 8 AA1 8 ALA A 15 ASP A 21 -1 N ALA A 15 O ILE A 99 SHEET 1 AA2 9 ASP B 3 ALA B 9 0 SHEET 2 AA2 9 ALA B 15 ASP B 21 -1 O ASP B 16 N THR B 8 SHEET 3 AA2 9 VAL B 93 LYS B 100 -1 O VAL B 93 N ASP B 21 SHEET 4 AA2 9 GLN B 79 GLN B 86 -1 N ASN B 83 O TRP B 96 SHEET 5 AA2 9 ALA B 65 LYS B 73 -1 N ALA B 70 O ILE B 82 SHEET 6 AA2 9 LEU B 51 GLY B 62 -1 N GLY B 62 O ALA B 65 SHEET 7 AA2 9 THR B 36 HIS B 40 -1 N LEU B 37 O GLY B 54 SHEET 8 AA2 9 GLY B 105 VAL B 111 -1 O HIS B 110 N VAL B 38 SHEET 9 AA2 9 ASP B 3 ALA B 9 -1 N ALA B 9 O GLY B 105 CISPEP 1 ALA B 63 GLY B 64 0 7.51 SITE 1 AC1 9 THR A 8 ASP A 10 VAL A 14 ALA A 15 SITE 2 AC1 9 ASP A 16 HIS A 112 HOH A 329 PRO B 92 SITE 3 AC1 9 HOH B 308 SITE 1 AC2 7 GLY A 97 SER A 98 HOH A 310 HOH A 322 SITE 2 AC2 7 HOH A 359 HOH A 395 ALA B 59 SITE 1 AC3 7 VAL A 14 THR A 36 SER A 53 LYS A 100 SITE 2 AC3 7 HIS A 112 HOH A 354 HOH A 409 SITE 1 AC4 7 ILE A 58 ASP B 16 THR B 36 HIS B 112 SITE 2 AC4 7 GOL B 202 HOH B 306 HOH B 339 SITE 1 AC5 7 VAL A 69 HOH A 326 ILE B 81 GLY B 97 SITE 2 AC5 7 SER B 98 GOL B 201 HOH B 301 CRYST1 71.720 71.720 69.510 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013943 0.008050 0.000000 0.00000 SCALE2 0.000000 0.016100 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014386 0.00000 MASTER 389 0 5 0 17 0 11 6 0 0 0 18 END