HEADER OXIDOREDUCTASE 19-FEB-16 5I8Z TITLE CRYSTAL STRUCTURE OF B. PSEUDOMALLEI FABI IN COMPLEX WITH NAD AND PT12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]; COMPND 3 CHAIN: A; COMPND 4 EC: 1.3.1.9; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA PSEUDOMALLEI; SOURCE 3 ORGANISM_TAXID: 28450; SOURCE 4 GENE: FABI, FABI_2, ACT79_25590, AM256_11615, AM257_11635, SOURCE 5 AMS56_08605, DP46_2957, DP49_6839, ERS012314_03793, ERS012372_03823, SOURCE 6 SY87_14645, TR70_1075, VU09_13745; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ENOYL-ACP REDUCTASE, BURKHOLDERIA PSEUDOMALLEI, DIPHENYL ETHERS, KEYWDS 2 SLOW-BINDING INHIBITORS, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.W.HIRSCHBECK,S.ELTSCHKNER,P.J.TONGE,C.KISKER REVDAT 4 06-SEP-17 5I8Z 1 REMARK REVDAT 3 19-APR-17 5I8Z 1 JRNL REVDAT 2 08-MAR-17 5I8Z 1 JRNL REVDAT 1 22-FEB-17 5I8Z 0 JRNL AUTH C.NECKLES,S.ELTSCHKNER,J.E.CUMMINGS,M.HIRSCHBECK,F.DARYAEE, JRNL AUTH 2 G.R.BOMMINENI,Z.ZHANG,L.SPAGNUOLO,W.YU,S.DAVOODI, JRNL AUTH 3 R.A.SLAYDEN,C.KISKER,P.J.TONGE JRNL TITL RATIONALIZING THE BINDING KINETICS FOR THE INHIBITION OF THE JRNL TITL 2 BURKHOLDERIA PSEUDOMALLEI FABI1 ENOYL-ACP REDUCTASE. JRNL REF BIOCHEMISTRY V. 56 1865 2017 JRNL REFN ISSN 1520-4995 JRNL PMID 28225601 JRNL DOI 10.1021/ACS.BIOCHEM.6B01048 REMARK 2 REMARK 2 RESOLUTION. 1.62 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.9_1692 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.62 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 32000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.142 REMARK 3 R VALUE (WORKING SET) : 0.141 REMARK 3 FREE R VALUE : 0.163 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1633 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.9733 - 3.7134 0.96 2627 123 0.1316 0.1518 REMARK 3 2 3.7134 - 2.9484 0.97 2524 149 0.1386 0.1433 REMARK 3 3 2.9484 - 2.5759 0.97 2500 138 0.1406 0.1733 REMARK 3 4 2.5759 - 2.3405 0.98 2529 128 0.1463 0.1782 REMARK 3 5 2.3405 - 2.1728 0.98 2492 132 0.1403 0.1585 REMARK 3 6 2.1728 - 2.0448 0.99 2513 129 0.1441 0.1561 REMARK 3 7 2.0448 - 1.9424 0.99 2523 158 0.1410 0.1831 REMARK 3 8 1.9424 - 1.8578 0.99 2525 141 0.1443 0.1562 REMARK 3 9 1.8578 - 1.7863 1.00 2549 123 0.1412 0.1814 REMARK 3 10 1.7863 - 1.7247 1.00 2527 142 0.1380 0.1548 REMARK 3 11 1.7247 - 1.6708 1.00 2553 157 0.1546 0.1814 REMARK 3 12 1.6708 - 1.6230 1.00 2505 113 0.1880 0.2392 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : NULL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 14.850 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.020 2023 REMARK 3 ANGLE : 1.918 2744 REMARK 3 CHIRALITY : 0.107 313 REMARK 3 PLANARITY : 0.010 349 REMARK 3 DIHEDRAL : 16.027 729 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 2:41) REMARK 3 ORIGIN FOR THE GROUP (A): -26.8051 3.9474 -29.7691 REMARK 3 T TENSOR REMARK 3 T11: 0.0527 T22: 0.3137 REMARK 3 T33: 0.1319 T12: 0.0932 REMARK 3 T13: 0.0325 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 0.0867 L22: 0.4733 REMARK 3 L33: 0.4649 L12: -0.0757 REMARK 3 L13: 0.0037 L23: -0.0789 REMARK 3 S TENSOR REMARK 3 S11: 0.1647 S12: 0.1582 S13: 0.1970 REMARK 3 S21: 0.1308 S22: -0.0271 S23: 0.1143 REMARK 3 S31: -0.2850 S32: -0.7171 S33: 0.0998 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 42:67) REMARK 3 ORIGIN FOR THE GROUP (A): -26.4691 6.7694 -18.5225 REMARK 3 T TENSOR REMARK 3 T11: 0.1132 T22: 0.2817 REMARK 3 T33: 0.1261 T12: 0.0933 REMARK 3 T13: 0.0962 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.2818 L22: 0.4111 REMARK 3 L33: 0.0400 L12: 0.1546 REMARK 3 L13: -0.0292 L23: -0.0380 REMARK 3 S TENSOR REMARK 3 S11: 0.2082 S12: 0.0196 S13: 0.1894 REMARK 3 S21: 0.2157 S22: -0.1484 S23: -0.0350 REMARK 3 S31: -0.1958 S32: -0.3672 S33: 0.0201 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 68:109) REMARK 3 ORIGIN FOR THE GROUP (A): -13.4987 2.0236 -21.5091 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.1203 REMARK 3 T33: 0.1284 T12: 0.0031 REMARK 3 T13: 0.0050 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 0.2585 L22: 0.1604 REMARK 3 L33: 0.4124 L12: -0.0589 REMARK 3 L13: -0.0613 L23: 0.1180 REMARK 3 S TENSOR REMARK 3 S11: -0.0264 S12: -0.0432 S13: 0.0366 REMARK 3 S21: 0.0419 S22: 0.0453 S23: -0.0249 REMARK 3 S31: -0.0502 S32: -0.1860 S33: 0.0140 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 110:178) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9585 -0.3915 -28.4494 REMARK 3 T TENSOR REMARK 3 T11: 0.0804 T22: 0.0552 REMARK 3 T33: 0.0838 T12: -0.0023 REMARK 3 T13: 0.0071 T23: 0.0084 REMARK 3 L TENSOR REMARK 3 L11: 0.1491 L22: 0.0821 REMARK 3 L33: 0.4344 L12: -0.0206 REMARK 3 L13: -0.0769 L23: 0.0339 REMARK 3 S TENSOR REMARK 3 S11: 0.0014 S12: -0.0207 S13: 0.0228 REMARK 3 S21: 0.0221 S22: 0.0406 S23: -0.0034 REMARK 3 S31: -0.0162 S32: -0.0809 S33: 0.0596 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 179:242) REMARK 3 ORIGIN FOR THE GROUP (A): -15.2151 8.9435 -38.4305 REMARK 3 T TENSOR REMARK 3 T11: 0.1267 T22: 0.0969 REMARK 3 T33: 0.0829 T12: 0.0418 REMARK 3 T13: 0.0144 T23: 0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.2418 L22: 0.0321 REMARK 3 L33: 0.5026 L12: 0.0050 REMARK 3 L13: -0.0423 L23: 0.0146 REMARK 3 S TENSOR REMARK 3 S11: 0.0032 S12: -0.0533 S13: 0.0282 REMARK 3 S21: 0.0562 S22: 0.0649 S23: 0.0316 REMARK 3 S31: -0.1483 S32: -0.2326 S33: 0.0611 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 243:258) REMARK 3 ORIGIN FOR THE GROUP (A): -7.7313 9.6021 -45.0309 REMARK 3 T TENSOR REMARK 3 T11: 0.1195 T22: 0.0735 REMARK 3 T33: 0.1143 T12: 0.0093 REMARK 3 T13: 0.0120 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0488 REMARK 3 L33: 0.1255 L12: -0.0144 REMARK 3 L13: 0.0095 L23: 0.0131 REMARK 3 S TENSOR REMARK 3 S11: 0.0133 S12: -0.0246 S13: 0.0542 REMARK 3 S21: 0.0446 S22: 0.0813 S23: -0.0697 REMARK 3 S31: -0.1055 S32: -0.0655 S33: 0.0338 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 5I8Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 19-FEB-16. REMARK 100 THE DEPOSITION ID IS D_1000218444. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.542 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS HTC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : AIMLESS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32015 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.620 REMARK 200 RESOLUTION RANGE LOW (A) : 28.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.62 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.30 REMARK 200 R MERGE FOR SHELL (I) : 0.14700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 7.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3EK2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.09 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M BISTRIS, PH 6.5, 22% PEG 400, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.95500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 44.83500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.95500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 44.83500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 37.95500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 44.83500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.27500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 37.95500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 44.83500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30740 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 -89.67000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -89.67000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 259 REMARK 465 GLY A 260 REMARK 465 LEU A 261 REMARK 465 GLU A 262 REMARK 465 GLU A 263 REMARK 465 LYS A 264 REMARK 465 LEU A 265 REMARK 465 ALA A 266 REMARK 465 ALA A 267 REMARK 465 ALA A 268 REMARK 465 LEU A 269 REMARK 465 GLU A 270 REMARK 465 HIS A 271 REMARK 465 HIS A 272 REMARK 465 HIS A 273 REMARK 465 HIS A 274 REMARK 465 HIS A 275 REMARK 465 HIS A 276 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 525 O HOH A 615 1.89 REMARK 500 O HOH A 472 O HOH A 592 1.93 REMARK 500 O HOH A 579 O HOH A 590 1.97 REMARK 500 O HOH A 653 O HOH A 660 1.98 REMARK 500 NH2 ARG A 43 O HOH A 401 1.98 REMARK 500 O HOH A 536 O HOH A 622 2.02 REMARK 500 O HOH A 413 O HOH A 604 2.03 REMARK 500 O HOH A 612 O HOH A 673 2.03 REMARK 500 O HOH A 600 O HOH A 714 2.03 REMARK 500 O HOH A 663 O HOH A 666 2.04 REMARK 500 O HOH A 472 O HOH A 554 2.12 REMARK 500 O HOH A 558 O HOH A 710 2.18 REMARK 500 O HOH A 609 O HOH A 647 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 401 O HOH A 421 7454 2.04 REMARK 500 O HOH A 485 O HOH A 699 2555 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 151 NE - CZ - NH1 ANGL. DEV. = 3.5 DEGREES REMARK 500 ARG A 151 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 155 -24.15 75.25 REMARK 500 ASN A 157 -122.80 48.72 REMARK 500 ASP A 248 28.67 -153.46 REMARK 500 SER A 249 18.54 59.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 722 DISTANCE = 6.33 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue NAD A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: binding site for residue JA1 A 302 DBREF1 5I8Z A 1 263 UNP A0A069B9A4_BURPE DBREF2 5I8Z A A0A069B9A4 1 263 SEQADV 5I8Z LYS A 264 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z LEU A 265 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z ALA A 266 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z ALA A 267 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z ALA A 268 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z LEU A 269 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z GLU A 270 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z HIS A 271 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z HIS A 272 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z HIS A 273 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z HIS A 274 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z HIS A 275 UNP A0A069B9A EXPRESSION TAG SEQADV 5I8Z HIS A 276 UNP A0A069B9A EXPRESSION TAG SEQRES 1 A 276 MET GLY PHE LEU ASP GLY LYS ARG ILE LEU LEU THR GLY SEQRES 2 A 276 LEU LEU SER ASN ARG SER ILE ALA TYR GLY ILE ALA LYS SEQRES 3 A 276 ALA CYS LYS ARG GLU GLY ALA GLU LEU ALA PHE THR TYR SEQRES 4 A 276 VAL GLY ASP ARG PHE LYS ASP ARG ILE THR GLU PHE ALA SEQRES 5 A 276 ALA GLU PHE GLY SER GLU LEU VAL PHE PRO CYS ASP VAL SEQRES 6 A 276 ALA ASP ASP ALA GLN ILE ASP ALA LEU PHE ALA SER LEU SEQRES 7 A 276 LYS THR HIS TRP ASP SER LEU ASP GLY LEU VAL HIS SER SEQRES 8 A 276 ILE GLY PHE ALA PRO ARG GLU ALA ILE ALA GLY ASP PHE SEQRES 9 A 276 LEU ASP GLY LEU THR ARG GLU ASN PHE ARG ILE ALA HIS SEQRES 10 A 276 ASP ILE SER ALA TYR SER PHE PRO ALA LEU ALA LYS ALA SEQRES 11 A 276 ALA LEU PRO MET LEU SER ASP ASP ALA SER LEU LEU THR SEQRES 12 A 276 LEU SER TYR LEU GLY ALA GLU ARG ALA ILE PRO ASN TYR SEQRES 13 A 276 ASN THR MET GLY LEU ALA LYS ALA ALA LEU GLU ALA SER SEQRES 14 A 276 VAL ARG TYR LEU ALA VAL SER LEU GLY ALA LYS GLY VAL SEQRES 15 A 276 ARG VAL ASN ALA ILE SER ALA GLY PRO ILE LYS THR LEU SEQRES 16 A 276 ALA ALA SER GLY ILE LYS SER PHE GLY LYS ILE LEU ASP SEQRES 17 A 276 PHE VAL GLU SER ASN SER PRO LEU LYS ARG ASN VAL THR SEQRES 18 A 276 ILE GLU GLN VAL GLY ASN ALA GLY ALA PHE LEU LEU SER SEQRES 19 A 276 ASP LEU ALA SER GLY VAL THR ALA GLU VAL MET HIS VAL SEQRES 20 A 276 ASP SER GLY PHE ASN ALA VAL VAL GLY GLY MET ALA GLY SEQRES 21 A 276 LEU GLU GLU LYS LEU ALA ALA ALA LEU GLU HIS HIS HIS SEQRES 22 A 276 HIS HIS HIS HET NAD A 301 44 HET JA1 A 302 23 HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM JA1 5-HEXYL-2-(4-NITROPHENOXY)PHENOL FORMUL 2 NAD C21 H27 N7 O14 P2 FORMUL 3 JA1 C18 H21 N O4 FORMUL 4 HOH *322(H2 O) HELIX 1 AA1 SER A 19 GLU A 31 1 13 HELIX 2 AA2 GLY A 41 ARG A 43 5 3 HELIX 3 AA3 PHE A 44 PHE A 55 1 12 HELIX 4 AA4 ASP A 67 THR A 80 1 14 HELIX 5 AA5 PRO A 96 ALA A 101 5 6 HELIX 6 AA6 THR A 109 ALA A 121 1 13 HELIX 7 AA7 TYR A 122 LEU A 132 1 11 HELIX 8 AA8 TYR A 146 GLU A 150 5 5 HELIX 9 AA9 ASN A 157 ALA A 179 1 23 HELIX 10 AB1 THR A 194 GLY A 199 1 6 HELIX 11 AB2 SER A 202 SER A 214 1 13 HELIX 12 AB3 THR A 221 SER A 234 1 14 HELIX 13 AB4 ASP A 235 SER A 238 5 4 HELIX 14 AB5 GLY A 250 VAL A 254 5 5 SHEET 1 AA1 7 VAL A 60 PRO A 62 0 SHEET 2 AA1 7 GLU A 34 TYR A 39 1 N PHE A 37 O PHE A 61 SHEET 3 AA1 7 ARG A 8 LEU A 11 1 N LEU A 11 O ALA A 36 SHEET 4 AA1 7 LEU A 85 HIS A 90 1 O VAL A 89 N LEU A 10 SHEET 5 AA1 7 LEU A 135 SER A 145 1 O LEU A 142 N HIS A 90 SHEET 6 AA1 7 ARG A 183 ALA A 189 1 O ILE A 187 N SER A 145 SHEET 7 AA1 7 VAL A 244 VAL A 247 1 O MET A 245 N ALA A 186 SITE 1 AC1 29 GLY A 13 LEU A 15 SER A 19 ILE A 20 SITE 2 AC1 29 VAL A 40 CYS A 63 ASP A 64 VAL A 65 SITE 3 AC1 29 SER A 91 ILE A 92 GLY A 93 LEU A 144 SITE 4 AC1 29 SER A 145 LYS A 163 ALA A 189 GLY A 190 SITE 5 AC1 29 PRO A 191 ILE A 192 THR A 194 ALA A 196 SITE 6 AC1 29 JA1 A 302 HOH A 433 HOH A 493 HOH A 520 SITE 7 AC1 29 HOH A 523 HOH A 535 HOH A 553 HOH A 568 SITE 8 AC1 29 HOH A 600 SITE 1 AC2 9 GLY A 93 PHE A 94 ALA A 95 ILE A 100 SITE 2 AC2 9 TYR A 156 ALA A 196 ILE A 200 NAD A 301 SITE 3 AC2 9 HOH A 469 CRYST1 74.550 75.910 89.670 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013414 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011152 0.00000 MASTER 449 0 2 14 7 0 11 6 0 0 0 22 END